BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017730
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 145 RADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQD-------SPTDINAVVA--- 194
+A E+ ++++L+SL +K+K +DE++ + E LK+ Q+ TD A VA
Sbjct: 30 KAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLN 89
Query: 195 RRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSA 237
RR + F E R ++ LE+ + A + R + + +
Sbjct: 90 RRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIES 132
>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
Length = 284
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 145 RADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQD-------SPTDINAVVARRR 197
+A E+ ++++L+SL +K+K +DE++ + E LK+ Q+ TD A VA
Sbjct: 30 KAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVAS-- 87
Query: 198 KDFTGEFFRYLSLVSETHDSLEDCDAVARLAT 229
R + LV E D A RLAT
Sbjct: 88 ------LNRRIQLVEEELDR-----AQERLAT 108
>pdb|1VSY|4 Chain 4, Proteasome Activator Complex
pdb|1VSY|7 Chain 7, Proteasome Activator Complex
pdb|3L5Q|5 Chain 5, Proteasome Activator Complex
pdb|3L5Q|7 Chain 7, Proteasome Activator Complex
Length = 799
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 81 ANAEMEEDQSEKEVAEGYTLTQFC-DKIIDVFLN 113
+ EED + V G LT FC ++I+++FLN
Sbjct: 309 GRVKYEEDICARGVTNGICLTSFCHEEIVEIFLN 342
>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 277
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 145 RADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQD-------SPTDINAVVARRR 197
+A E+ ++++L+SL +K+K +DE++ + E LK+ Q+ TD A VA
Sbjct: 23 KAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVAS-- 80
Query: 198 KDFTGEFFRYLSLVSETHDSLEDCDAVARLAT 229
R + LV E D A RLAT
Sbjct: 81 ------LNRRIQLVEEELDR-----AQERLAT 101
>pdb|1VHD|A Chain A, Crystal Structure Of An Iron Containing Alcohol
Dehydrogenase
pdb|1VHD|B Chain B, Crystal Structure Of An Iron Containing Alcohol
Dehydrogenase
Length = 371
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 165 VKKIDDEMESHYELLKEIQDSPT--DINAVVARRRKD 199
+KK+ DE E YE+ E++++P+ ++ V R R D
Sbjct: 51 LKKLLDETEISYEIFDEVEENPSFDNVXKAVERYRND 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,452,531
Number of Sequences: 62578
Number of extensions: 347285
Number of successful extensions: 1321
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1314
Number of HSP's gapped (non-prelim): 18
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)