BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017730
         (367 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q84WN0|Y4920_ARATH Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis
           thaliana GN=At4g37920 PE=1 SV=2
          Length = 427

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/309 (72%), Positives = 261/309 (84%), Gaps = 7/309 (2%)

Query: 59  SFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV 118
           +F T+T++ +  TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+V
Sbjct: 49  TFATDTVTYNGTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKV 101

Query: 119 KQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYEL 178
           KQW+ YLV R++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID EME H +L
Sbjct: 102 KQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDL 161

Query: 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAY 238
           LKEIQ++PTDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAY
Sbjct: 162 LKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSETLDGLEDRDAVARLATRCLSAVSAY 221

Query: 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKAS 298
           D TLE VETLD+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN A+A+AK S
Sbjct: 222 DNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLINSAYAAAKES 281

Query: 299 QTMKNEVKDIMYCLYKATKSSLRGIAPKEIKLLKYLLNIIDPEERFSALATAFSPGSEHE 358
           QT+ NE KDIMY LYKATKSSLR I PKEIKLLKYLLNI DPEERFSALATAFSPG +HE
Sbjct: 282 QTVTNEAKDIMYHLYKATKSSLRSITPKEIKLLKYLLNITDPEERFSALATAFSPGDDHE 341

Query: 359 SKNPKALYT 367
           +K+PKALYT
Sbjct: 342 AKDPKALYT 350


>sp|Q2YXX0|SBCC_STAAB Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain bovine
           RF122 / ET3-1) GN=sbcC PE=3 SV=2
          Length = 1009

 Score = 34.7 bits (78), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 6/68 (8%)

Query: 126 VFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEM---ESHYELLKEI 182
           V   D NKY++S+ N  R R + E    + ++L +L + ++K++D +   ES YE + E+
Sbjct: 380 VLFNDINKYQQSYLNIERLRTEGEQ---LGDELNNLIKGLEKVEDSIGNNESDYEKIIEL 436

Query: 183 QDSPTDIN 190
            ++ T+IN
Sbjct: 437 NNAITNIN 444


>sp|Q6GH60|SBCC_STAAR Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain MRSA252)
           GN=sbcC PE=3 SV=1
          Length = 1009

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 126 VFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEM---ESHYELLKEI 182
           V   D NKY++S+ N  R R + E    + ++L +L   ++K++D +   ES YE + E+
Sbjct: 380 VLFNDINKYQQSYLNIERLRTEGEQ---LADELNNLIEGLEKVEDSIGNNESDYEKIIEL 436

Query: 183 QDSPTDIN 190
            ++ T+IN
Sbjct: 437 NNAITNIN 444


>sp|Q6CM12|BRO1_KLULA Vacuolar protein-sorting protein BRO1 OS=Kluyveromyces lactis
           (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
           NRRL Y-1140 / WM37) GN=BRO1 PE=3 SV=1
          Length = 813

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 245 VETLDSAQAKFD----DILNSPSVDVACEK---IKSLAKAKELDSSLILLINGAWASAKA 297
           +  L  A A FD    + LNSPS+D A E    + +L  A+  +  L+ LING  AS +A
Sbjct: 144 IPYLSKAMACFDYMSNNFLNSPSIDCAAENTSFLSTLLHAEAQEMFLMTLINGPDASKRA 203

Query: 298 S 298
           S
Sbjct: 204 S 204


>sp|P13542|MYH8_MOUSE Myosin-8 OS=Mus musculus GN=Myh8 PE=1 SV=2
          Length = 1937

 Score = 33.1 bits (74), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 143  RTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTG 202
            R +A EE    +  K  SL +  +++ +E+E   +L+ +++ +     A + +++++F  
Sbjct: 1399 RLQAAEEHVEAVNAKCASLEKTKQRLQNEVE---DLMIDVERTNAAC-AALDKKQRNFDK 1454

Query: 203  EFFRYLSLVSETHDSLEDCDAVAR-LATRCLSAVSAYDKTLEHVETL 248
                +     ET   LE C   +R L+T      +AY+++L+H+ETL
Sbjct: 1455 VLSEWRQKYEETQAELESCQKESRTLSTELFKVKNAYEESLDHLETL 1501


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.127    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,951,632
Number of Sequences: 539616
Number of extensions: 4506970
Number of successful extensions: 17776
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 17683
Number of HSP's gapped (non-prelim): 215
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)