Query 017730
Match_columns 367
No_of_seqs 39 out of 41
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 02:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05667 DUF812: Protein of un 76.3 22 0.00048 38.3 10.5 169 123-344 409-587 (594)
2 PF11855 DUF3375: Protein of u 62.1 2.1E+02 0.0045 29.9 14.0 227 99-350 67-339 (478)
3 PF02520 DUF148: Domain of unk 59.6 1E+02 0.0022 25.5 9.0 83 250-335 2-106 (113)
4 PF02520 DUF148: Domain of unk 57.7 1.1E+02 0.0024 25.3 10.9 47 244-290 59-107 (113)
5 COG0143 MetG Methionyl-tRNA sy 57.2 2.8E+02 0.006 30.2 13.8 179 164-367 347-542 (558)
6 cd07316 terB_like_DjlA N-termi 55.7 1E+02 0.0022 24.3 8.1 55 145-199 11-65 (106)
7 PF03705 CheR_N: CheR methyltr 50.0 44 0.00095 24.0 4.8 54 129-187 3-56 (57)
8 TIGR03042 PS_II_psbQ_bact phot 42.2 1.4E+02 0.0031 27.1 7.7 91 152-258 32-130 (142)
9 TIGR02284 conserved hypothetic 41.9 1.8E+02 0.004 25.3 8.2 106 223-329 4-118 (139)
10 PF08900 DUF1845: Domain of un 41.0 87 0.0019 29.5 6.4 91 136-245 40-135 (217)
11 COG4660 RnfE Predicted NADH:ub 38.5 8.5 0.00018 36.9 -0.6 42 313-354 52-93 (212)
12 TIGR02284 conserved hypothetic 37.2 2.8E+02 0.0061 24.2 9.6 35 136-173 16-50 (139)
13 COG1392 Phosphate transport re 35.9 3.9E+02 0.0084 25.4 12.4 154 156-345 27-207 (217)
14 PF09537 DUF2383: Domain of un 35.1 51 0.0011 26.7 3.5 81 222-303 4-86 (111)
15 PF06552 TOM20_plant: Plant sp 33.6 1.1E+02 0.0023 29.2 5.7 57 203-260 5-63 (186)
16 PF01213 CAP_N: Adenylate cycl 33.5 40 0.00086 33.7 3.1 56 155-215 85-140 (312)
17 KOG4559 Uncharacterized conser 32.9 81 0.0018 28.0 4.5 23 234-256 94-116 (120)
18 KOG0804 Cytoplasmic Zn-finger 32.5 2.3E+02 0.0049 30.6 8.5 55 129-183 347-402 (493)
19 PF05478 Prominin: Prominin; 32.3 4.1E+02 0.0089 29.5 10.7 134 128-297 212-346 (806)
20 PF04124 Dor1: Dor1-like famil 31.2 3.5E+02 0.0077 26.6 9.2 111 221-339 66-188 (338)
21 PF15565 Imm16: Immunity prote 31.1 3.5E+02 0.0077 23.5 9.1 90 166-270 9-104 (106)
22 TIGR02425 decarb_PcaC 4-carbox 30.3 3.6E+02 0.0078 23.3 8.8 21 294-314 81-101 (123)
23 PRK04778 septation ring format 30.0 2.6E+02 0.0057 29.6 8.5 88 127-214 69-158 (569)
24 cd07177 terB_like tellurium re 29.7 2.5E+02 0.0054 21.3 7.2 84 146-229 12-102 (104)
25 TIGR02531 yecD_yerC TrpR-relat 29.7 48 0.001 27.5 2.5 29 327-355 5-33 (88)
26 PF05099 TerB: Tellurite resis 29.1 2.2E+02 0.0048 23.4 6.4 87 145-231 35-128 (140)
27 KOG3030 Lipid phosphate phosph 28.8 12 0.00027 37.4 -1.2 17 132-148 134-150 (317)
28 PF05757 PsbQ: Oxygen evolving 27.9 1.3E+02 0.0029 28.6 5.4 51 207-259 141-191 (202)
29 PF10112 Halogen_Hydrol: 5-bro 27.6 4.6E+02 0.01 23.7 8.8 43 139-191 84-126 (199)
30 KOG0240 Kinesin (SMY1 subfamil 27.5 4.3E+02 0.0093 29.4 9.6 125 154-281 419-548 (607)
31 PF05227 CHASE3: CHASE3 domain 26.7 3.4E+02 0.0074 21.8 8.7 99 176-274 16-124 (138)
32 PF04391 DUF533: Protein of un 26.5 2.5E+02 0.0055 26.3 6.9 81 144-231 90-173 (188)
33 PF09537 DUF2383: Domain of un 26.4 98 0.0021 25.0 3.8 37 137-176 18-54 (111)
34 PF06160 EzrA: Septation ring 26.4 5E+02 0.011 27.7 9.8 88 127-214 65-154 (560)
35 TIGR00634 recN DNA repair prot 25.8 8E+02 0.017 25.9 15.9 126 155-293 174-311 (563)
36 PF10508 Proteasom_PSMB: Prote 25.4 7.9E+02 0.017 25.6 12.6 138 137-276 202-363 (503)
37 PRK13441 F0F1 ATP synthase sub 23.8 1.6E+02 0.0036 26.2 5.0 45 241-285 27-75 (180)
38 PF09371 Tex_N: Tex-like prote 23.6 87 0.0019 29.3 3.3 25 268-292 62-86 (193)
39 PRK08055 chorismate mutase; Pr 23.4 5E+02 0.011 24.3 8.2 50 220-271 120-169 (181)
40 PF05266 DUF724: Protein of un 22.5 4.8E+02 0.01 24.4 7.9 89 154-262 101-189 (190)
41 cd07313 terB_like_2 tellurium 22.1 4E+02 0.0087 21.0 8.7 85 145-229 11-102 (104)
42 KOG0841 Multifunctional chaper 21.9 2.8E+02 0.006 27.6 6.4 56 201-269 124-192 (247)
43 PF10643 Cytochrome-c551: Phot 21.0 1.7E+02 0.0036 28.9 4.7 62 247-313 168-230 (233)
44 KOG0796 Spliceosome subunit [R 20.5 4.3E+02 0.0094 27.2 7.7 125 198-344 78-205 (319)
45 PF04625 DEC-1_N: DEC-1 protei 20.0 1.1E+02 0.0023 31.9 3.4 30 293-322 375-404 (407)
No 1
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.35 E-value=22 Score=38.31 Aligned_cols=169 Identities=22% Similarity=0.375 Sum_probs=101.6
Q ss_pred hhhcchhhhhhhhHhH---HHHHHhhhhh-ccCh-HHHHHHHHHHHHhhhhcHHHHH----HHHHHHHHhcCCcchhHHH
Q 017730 123 KYLVFREDWNKYRESF---YNRCRTRADE-ESEP-TMKEKLISLARKVKKIDDEMES----HYELLKEIQDSPTDINAVV 193 (367)
Q Consensus 123 kLLaFs~EW~~iRp~F---f~Rcq~RAd~-E~DP-~~K~kL~~L~RkLK~iDeev~~----hneLL~~i~e~p~di~aIV 193 (367)
++.....+|..+|.-. |++.+...+. +.+. .+.+.+-.+.++++++-++++. |..|..+++..|.+++
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~--- 485 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN--- 485 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---
Confidence 5667889999999877 4555554442 2222 3456777888899998888866 4455556777788753
Q ss_pred hhhccCCchhHHHHHHHHhhhcCChhh-HHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCcChHHHHHHHH
Q 017730 194 ARRRKDFTGEFFRYLSLVSETHDSLED-CDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIK 272 (367)
Q Consensus 194 A~rRkDFT~EFF~hL~~l~ea~d~~~~-rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnspSld~ac~KId 272 (367)
|.-||.- +.|-..+-.. +++|.|+-. =...+|.= |.
T Consensus 486 ---Rs~Yt~R-------IlEIv~NI~KQk~eI~KIl~---------------------DTr~lQke------------iN 522 (594)
T PF05667_consen 486 ---RSAYTRR-------ILEIVKNIRKQKEEIEKILS---------------------DTRELQKE------------IN 522 (594)
T ss_pred ---HHHHHHH-------HHHHHHhHHHHHHHHHHHHH---------------------HHHHHHHH------------HH
Confidence 4444433 2232222222 234433322 11122222 22
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhhhcCchhHHHHHHHhccCChHHHH
Q 017730 273 SLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMYCLYKATKSSLRGIAPKEIKLLKYLLNIIDPEERF 344 (367)
Q Consensus 273 ~LA~~~eLDsaLvLlisKAwaaAKES~~~kdEvKDIM~hLY~tak~~l~r~~PKEiRILKyLLsIeDPeER~ 344 (367)
.+ .|+||-++..+--.-|.-|| |||+.-=+|.+..++.+++..++=.---.=+..-.|.|-+++.
T Consensus 523 ~l--~gkL~RtF~v~dElifrdAK-----kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI 587 (594)
T PF05667_consen 523 SL--TGKLDRTFTVTDELIFRDAK-----KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQI 587 (594)
T ss_pred HH--HHHHHhHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 46788888888888899888 8898889999999999998876543222222333344444443
No 2
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=62.08 E-value=2.1e+02 Score=29.93 Aligned_cols=227 Identities=20% Similarity=0.237 Sum_probs=127.1
Q ss_pred chHHhhHHHHH---hHhcCCCCcc----------cchhhhcchhhhhhhh--------HhHHHHHHhhhhhccChHHHHH
Q 017730 99 TLTQFCDKIID---VFLNEKPRVK----------QWRKYLVFREDWNKYR--------ESFYNRCRTRADEESEPTMKEK 157 (367)
Q Consensus 99 tm~~vCDKLId---VFl~~Kp~~~----------dWrkLLaFs~EW~~iR--------p~Ff~Rcq~RAd~E~DP~~K~k 157 (367)
+=...|+..+. =||.+.+.+. .=.+-|.|=..|.+=+ ...|...+ +.....||+-..+
T Consensus 67 ~a~~yl~~W~~~~~GwL~r~~~~~~~e~~y~lT~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~-~la~~~~~Dp~~R 145 (478)
T PF11855_consen 67 SARAYLRDWVRADKGWLRRRYDEGSDEEHYELTPAAEKALRFLERLEERRFVGTESRLNTVFDALR-QLAEGTDPDPERR 145 (478)
T ss_pred cHHHHHHHHHHHhhhHHHhccCCCCCCeeEEeCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHH-HHHHhcCCCHHHH
Confidence 34557777776 4555543222 1234445555553211 12344443 3445666676778
Q ss_pred HHHHHHHhhhhcHHHHH-----------------HHHHHHHHhcCCcchhHHHhhhccCCchhHHHHHHHHh-hhcCChh
Q 017730 158 LISLARKVKKIDDEMES-----------------HYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVS-ETHDSLE 219 (367)
Q Consensus 158 L~~L~RkLK~iDeev~~-----------------hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~hL~~l~-ea~d~~~ 219 (367)
+-.|-++-.+||.|+++ +.+++...++=|.|+-.+- +-|+.|+--+ +..-+.+
T Consensus 146 i~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~V~---------~~~r~l~r~lr~~i~~~~ 216 (478)
T PF11855_consen 146 IAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFRRVE---------DNFRELDRALRERIIDWD 216 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhcc
Confidence 88899999999998865 2222222222233221111 1122222211 1111100
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCc-ChHHHHHHHHHHHH---hccCChHHH---HHHHHHH
Q 017730 220 DCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSP-SVDVACEKIKSLAK---AKELDSSLI---LLINGAW 292 (367)
Q Consensus 220 ~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnsp-Sld~ac~KId~LA~---~~eLDsaLv---LlisKAw 292 (367)
..-|..+-.....||...++-+ =.+=.-|.++|.+| ..++..+-|+.... ...|++..- --+-.-|
T Consensus 217 -----~~~G~vL~~~~~~~d~l~~Sdq--GrsF~aF~~~L~d~~~~~~l~~~l~~Vl~~~~~~~L~~~~r~~Lr~l~~~l 289 (478)
T PF11855_consen 217 -----GSRGEVLDEYFDGYDALAESDQ--GRSFRAFWDFLLDPERQAELDELLDQVLARPFARDLDPDQRRFLRRLHRRL 289 (478)
T ss_pred -----ccHHHHHHHHHHhHHHHhcCCC--CCcHHHHHHHHcCHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHH
Confidence 0124444455666666333322 11223477888888 56777777777775 889998765 2233333
Q ss_pred HhhhhccchhhhHHHHHHHHHHHHHhhhhhcCchhHHHHHHHhccCChHHHHHHHHhc
Q 017730 293 ASAKASQTMKNEVKDIMYCLYKATKSSLRGIAPKEIKLLKYLLNIIDPEERFSALATA 350 (367)
Q Consensus 293 aaAKES~~~kdEvKDIM~hLY~tak~~l~r~~PKEiRILKyLLsIeDPeER~~aL~~A 350 (367)
..+ -++|-++|.++....+.-++.+.+.|-|-+..||+ +=+....++.++
T Consensus 290 ~~~------~~~V~~~~~~~s~~Lrrfv~~~~~~e~R~v~~lL~--~~~~~A~~l~~~ 339 (478)
T PF11855_consen 290 LEA------GEEVQRTRRRLSRSLRRFVRSQAWLENRRVRRLLR--EIEAAALALRDA 339 (478)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--HHHHHHHHHHhh
Confidence 332 24899999999999999999999999999999986 233334444344
No 3
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=59.63 E-value=1e+02 Score=25.55 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=49.3
Q ss_pred HHHHhhhhhhCCc--ChHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhccchhhhHHHHHHHHHH-------------
Q 017730 250 SAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMYCLYK------------- 314 (367)
Q Consensus 250 ~A~~kf~DILnsp--Sld~ac~KId~LA~~~eLDsaLvLlisKAwaaAKES~~~kdEvKDIM~hLY~------------- 314 (367)
.|+..|.+|++.+ |..+...+|+.+|++.-+-.. +--....+.+.+ ..++..|..|+..|=.
T Consensus 2 ea~~ef~~I~~n~~lt~~e~~~~l~~Wa~~~~v~~~-~~~f~~~~~~~~--~~~~~~~~~vi~~L~~a~~~l~~I~~n~~ 78 (113)
T PF02520_consen 2 EARKEFFQIFQNPNLTKAEIEEQLDEWAEKYGVQDQ-YNEFKAQVQAQK--EEVRKNVTAVISNLSSAFAKLSAILDNKS 78 (113)
T ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHCCcHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 5788999999998 577888999999998773332 222222222222 1233345555544431
Q ss_pred -------HHHhhhhhcCchhHHHHHHHh
Q 017730 315 -------ATKSSLRGIAPKEIKLLKYLL 335 (367)
Q Consensus 315 -------tak~~l~r~~PKEiRILKyLL 335 (367)
.+-..|..+.|+|++.|.|+.
T Consensus 79 lT~~q~~~~I~~l~~~~~~e~~~l~~i~ 106 (113)
T PF02520_consen 79 LTRQQQQEAIDALRKQYPEEVDTLFFIR 106 (113)
T ss_pred cCHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 123455566677777666654
No 4
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=57.73 E-value=1.1e+02 Score=25.34 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=35.1
Q ss_pred hHHhHHHHHHhhhhhhCCc--ChHHHHHHHHHHHHhccCChHHHHHHHH
Q 017730 244 HVETLDSAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLING 290 (367)
Q Consensus 244 ~~~~Ld~A~~kf~DILnsp--Sld~ac~KId~LA~~~eLDsaLvLlisK 290 (367)
-+..|-.|-.++.+|++.. |..+..++|++|.+.--.+..-+.-|.+
T Consensus 59 vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~~l~~i~~ 107 (113)
T PF02520_consen 59 VISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVDTLFFIRK 107 (113)
T ss_pred HHHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3455668899999999987 6899999999999877666444444433
No 5
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.19 E-value=2.8e+02 Score=30.15 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=96.9
Q ss_pred HhhhhcHHHHHHHHHHHHHhcCCcc--hhHHHhhhccCCchhHHHHHHHHhh---hc-CC--hhhH----HHHHHHHHHH
Q 017730 164 KVKKIDDEMESHYELLKEIQDSPTD--INAVVARRRKDFTGEFFRYLSLVSE---TH-DS--LEDC----DAVARLATRC 231 (367)
Q Consensus 164 kLK~iDeev~~hneLL~~i~e~p~d--i~aIVA~rRkDFT~EFF~hL~~l~e---a~-d~--~~~r----d~LarL~~~c 231 (367)
-+....-|+=||.=+.+.=...+.| ++++|+|...|+-+.+=.+++-.+- .+ ++ +... +.-..+-
T Consensus 347 ~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~--- 423 (558)
T COG0143 347 LLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELL--- 423 (558)
T ss_pred HHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHH---
Confidence 3445677777777555444444555 5888888888877776555554442 11 11 0000 0001111
Q ss_pred HHHHHhhhhhhhhHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHhccCChHHHHHHHHH--HHhhhhccchhhhHHHHH
Q 017730 232 LSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGA--WASAKASQTMKNEVKDIM 309 (367)
Q Consensus 232 lsav~ayD~a~e~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~~eLDsaLvLlisKA--waaAKES~~~kdEvKDIM 309 (367)
+.+++|...+.+-++.-.+..|.+.|=+|+..+- -.++.. |..+|+ -..+++..||
T Consensus 424 --------------~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N------~Yi~~~~PW~l~k~--~~~~~~~~vl 481 (558)
T COG0143 424 --------------ALAREALEAVAEAMEKYEFRKALEEIMALASRAN------KYIDEQAPWKLAKE--DKRERLATVL 481 (558)
T ss_pred --------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHhhcCCCchhhcc--CcHHHHHHHH
Confidence 1122223333333333346666666666665431 223333 999999 4578999999
Q ss_pred HHHHHHHHhhh---hhcCchhHHHHHHHhccCChHHHHHHHHhccCCCCccccCCCCCcCC
Q 017730 310 YCLYKATKSSL---RGIAPKEIKLLKYLLNIIDPEERFSALATAFSPGSEHESKNPKALYT 367 (367)
Q Consensus 310 ~hLY~tak~~l---~r~~PKEiRILKyLLsIeDPeER~~aL~~AFtPG~ElE~~d~D~LyT 367 (367)
|+++...+.-. +=.+|.=-.=+-..|+++....-+.-......+++.+....+..||+
T Consensus 482 ~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lF~ 542 (558)
T COG0143 482 YLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGARQPLLPGHKLGPPEPLFP 542 (558)
T ss_pred HHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhhhhccccCCCcccCCcccCcc
Confidence 99998877654 44555444444556676644433434444445555566555555553
No 6
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=55.75 E-value=1e+02 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=40.3
Q ss_pred hhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccC
Q 017730 145 RADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKD 199 (367)
Q Consensus 145 RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkD 199 (367)
+||-.-++..++.+.++.+++...+.+.+.--+++...+..+.++..+...-+..
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRA 65 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 5777889999999999999987655577777777777777777765555544443
No 7
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=49.98 E-value=44 Score=24.03 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=35.9
Q ss_pred hhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCc
Q 017730 129 EDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPT 187 (367)
Q Consensus 129 ~EW~~iRp~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~ 187 (367)
.+|..++..++++|--.-..--...++.+|.++.+... +..+.+.+..|+.+|.
T Consensus 3 ~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~~-----~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 3 AEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRALG-----LPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHT--------HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHhCCC
Confidence 57888999999999888888888888888877777766 6677778887877765
No 8
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=42.25 E-value=1.4e+02 Score=27.12 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhH--------HHHHHHHhhhcCChhhHHH
Q 017730 152 PTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEF--------FRYLSLVSETHDSLEDCDA 223 (367)
Q Consensus 152 P~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EF--------F~hL~~l~ea~d~~~~rd~ 223 (367)
|.+..++-+-++.+++.-|+| .++...|.++-=-|+.-| =+-|+.+..+. -+++|.+
T Consensus 32 p~~l~~i~~~~~~i~~~~~r~--------------~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl-~p~dqk~ 96 (142)
T TIGR03042 32 PAQLAQIQRQAEGIEAAKDRL--------------PELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSL-LPKDQKE 96 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHcc-CHHhHHH
Confidence 555555555555554444444 344444444433333332 23355555555 3888999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhh
Q 017730 224 VARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDI 258 (367)
Q Consensus 224 LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DI 258 (367)
+-+|+......++.-|.|....+ --.|+..|+.+
T Consensus 97 a~~L~~~Lf~~L~~LD~AA~~kd-~~~a~k~Y~~a 130 (142)
T TIGR03042 97 ALALAKELKDDLEKLDEAARLQD-GPQAQKAYQKA 130 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 99999999999999998888776 34444444443
No 9
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=41.89 E-value=1.8e+02 Score=25.28 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCc--ChHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhccc
Q 017730 223 AVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQT 300 (367)
Q Consensus 223 ~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnsp--Sld~ac~KId~LA~~~eLDsaLvLlisKAwaaAKES~~ 300 (367)
.|-.|=..|..++++|+.+.++.+.- .-...|+++-.-- ...+....|..|-..-+=+++++-.+.++|...|-.-.
T Consensus 4 ~Ln~Lie~~~D~~~gY~~aae~v~~~-~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~lks~~~ 82 (139)
T TIGR02284 4 SLNDLIEISIDGKDGFEESAEEVKDP-ELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGKIRATLT 82 (139)
T ss_pred HHHHHHHHcccHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHc
Confidence 45566677888999999999988643 2245555554433 24444555555554555688999999999997776543
Q ss_pred -h-----hhhHHHHHHHHHHHHHhhhhhc-CchhHH
Q 017730 301 -M-----KNEVKDIMYCLYKATKSSLRGI-APKEIK 329 (367)
Q Consensus 301 -~-----kdEvKDIM~hLY~tak~~l~r~-~PKEiR 329 (367)
. =+++..-=-+.-.+.++.|..- .|+++|
T Consensus 83 ~~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r 118 (139)
T TIGR02284 83 PNDDYVVLEEAERGEDRAKKAYDETLADQDTPAAAR 118 (139)
T ss_pred CCChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHH
Confidence 1 1222222234444555556554 777765
No 10
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=40.96 E-value=87 Score=29.54 Aligned_cols=91 Identities=20% Similarity=0.323 Sum_probs=65.3
Q ss_pred HhHHHHHH--hhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcC-Ccch--hHHHhhhccCCchhHHHHHHH
Q 017730 136 ESFYNRCR--TRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDS-PTDI--NAVVARRRKDFTGEFFRYLSL 210 (367)
Q Consensus 136 p~Ff~Rcq--~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~-p~di--~aIVA~rRkDFT~EFF~hL~~ 210 (367)
|+|+.++. .++...+||=--..|+++-.++.++.++|+...+-|+.+-.. |..+ ..+-..+=.++..-|
T Consensus 40 ~~~~~~~~~i~~~a~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l~~~l~~~p~~i~i~~~~s~~P~~~~l~~------ 113 (217)
T PF08900_consen 40 PGFASRLNRIWRDARQDDPYADWWLLRIEEKINEARQELQELIARLDALLAELPKGISISEIQSVQPVDVPLFF------ 113 (217)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCccccccccCCCccceeEe------
Confidence 56777776 466778999999999999999999999999999988886655 5554 333332222222221
Q ss_pred HhhhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhH
Q 017730 211 VSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHV 245 (367)
Q Consensus 211 l~ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~ 245 (367)
-..+|-+|+-++..||...--+
T Consensus 114 -------------~splGy~~v~LL~~yD~L~~~v 135 (217)
T PF08900_consen 114 -------------RSPLGYRCVYLLVDYDQLARKV 135 (217)
T ss_pred -------------cCHHHHHHHHHHHHHHHHHHHH
Confidence 2357889999999998765443
No 11
>COG4660 RnfE Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Energy production and conversion]
Probab=38.48 E-value=8.5 Score=36.87 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=35.1
Q ss_pred HHHHHhhhhhcCchhHHHHHHHhccCChHHHHHHHHhccCCC
Q 017730 313 YKATKSSLRGIAPKEIKLLKYLLNIIDPEERFSALATAFSPG 354 (367)
Q Consensus 313 Y~tak~~l~r~~PKEiRILKyLLsIeDPeER~~aL~~AFtPG 354 (367)
-+++.+.+++.+|+|+||=-|..=|.-----...|-+|||||
T Consensus 52 sN~~iSl~Rk~iP~eiRiPi~vmIIAs~VT~V~mlm~Ayt~~ 93 (212)
T COG4660 52 SNTTISLFRKWIPKEIRIPIYVMIIASVVTAVQMLMNAYTYD 93 (212)
T ss_pred hhHHHHHHHHhCcccceeeeEeehHHHHHHHHHHHHHHhhhH
Confidence 356889999999999999888777777777778888899886
No 12
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=37.25 E-value=2.8e+02 Score=24.15 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=22.2
Q ss_pred HhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHH
Q 017730 136 ESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEME 173 (367)
Q Consensus 136 p~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~ 173 (367)
-.+|++|-+++ .||..|.-+.+.+..=...-.+++
T Consensus 16 ~~gY~~aae~v---~~~~lk~~f~~~~~~~~~~~~eL~ 50 (139)
T TIGR02284 16 KDGFEESAEEV---KDPELATLFRRIAGEKSAIVSELQ 50 (139)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788887776 678888776666654444433333
No 13
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=35.94 E-value=3.9e+02 Score=25.39 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhhhc-HHHHHHHHHHHHHhcCCcch-hHHHhhhccCCchhHHHH-HHHHhhhc-----------------
Q 017730 156 EKLISLARKVKKID-DEMESHYELLKEIQDSPTDI-NAVVARRRKDFTGEFFRY-LSLVSETH----------------- 215 (367)
Q Consensus 156 ~kL~~L~RkLK~iD-eev~~hneLL~~i~e~p~di-~aIVA~rRkDFT~EFF~h-L~~l~ea~----------------- 215 (367)
..+..+.+.++.-+ ++++.|......+..-...| ..|.-.-.+-|=.+|++. +--+++..
T Consensus 27 ~~~~~~f~~~~~g~~~~~e~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~ 106 (217)
T COG1392 27 KLLAPAFEALRRGDYEDAEELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKLLLLR 106 (217)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666777787776 88888888888887777666 666666555554444332 11111111
Q ss_pred C--Ch-hhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHhccCChHHHHHHHHHH
Q 017730 216 D--SL-EDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAW 292 (367)
Q Consensus 216 d--~~-~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~~eLDsaLvLlisKAw 292 (367)
. =| +=++.+.+++..++.+++.+-.+.+..+ ++.+. ..+..
T Consensus 107 ~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~--------------------------~~~e~----------~~~~~ 150 (217)
T COG1392 107 KPFIPEELDEEFLRLVDLSLKAAELLAEAIELLE--------------------------DLLES----------ADRLL 150 (217)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHh----------HHHHH
Confidence 0 12 3345555555555555544433333322 11111 44556
Q ss_pred HhhhhccchhhhHHHHHHHHHHHHHhhhhhcCchhH----HHHHHHhccCChHHHHH
Q 017730 293 ASAKASQTMKNEVKDIMYCLYKATKSSLRGIAPKEI----KLLKYLLNIIDPEERFS 345 (367)
Q Consensus 293 aaAKES~~~kdEvKDIM~hLY~tak~~l~r~~PKEi----RILKyLLsIeDPeER~~ 345 (367)
.-++|-....+|+-+|...|++..-+.=...=|.++ .|+.++-+|-|-.|+.+
T Consensus 151 ~i~~eI~~~E~e~D~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~IaD~~edva 207 (217)
T COG1392 151 EIIKEIEALEHECDDIQRELLKKLFSLETEINPIDVIILKEIIEKIEDIADRAEDVA 207 (217)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888888877777776554444436665 45567777877777654
No 14
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=35.14 E-value=51 Score=26.66 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCc--ChHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhcc
Q 017730 222 DAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQ 299 (367)
Q Consensus 222 d~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnsp--Sld~ac~KId~LA~~~eLDsaLvLlisKAwaaAKES~ 299 (367)
+.|-.|-..|..++++|+.+.+..+. ..-...|+++.+.- -.++....|..|-..-.=++++.-.+.++|...|.+-
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~~~ 82 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKAED-PELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKSAL 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHHHh
Confidence 46777888899999999999998874 34445566665543 1333344444444444445589999999999988765
Q ss_pred chhh
Q 017730 300 TMKN 303 (367)
Q Consensus 300 ~~kd 303 (367)
...+
T Consensus 83 ~~~d 86 (111)
T PF09537_consen 83 GGDD 86 (111)
T ss_dssp ----
T ss_pred cCCC
Confidence 5543
No 15
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.64 E-value=1.1e+02 Score=29.18 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=43.4
Q ss_pred hHHHHHHHHhhh-c-CChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhC
Q 017730 203 EFFRYLSLVSET-H-DSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILN 260 (367)
Q Consensus 203 EFF~hL~~l~ea-~-d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILn 260 (367)
=||+|.+-.+++ | .+|.+-+.|.+-|-.++-.-+. -...+...-++.|..||+..|.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf-k~g~es~~miedAisK~eeAL~ 63 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF-KQGPESKKMIEDAISKFEEALK 63 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHh
Confidence 389999999988 5 6899999999999888877653 3444666788999999888765
No 16
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=33.46 E-value=40 Score=33.73 Aligned_cols=56 Identities=34% Similarity=0.444 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHHHHHHHHhhhc
Q 017730 155 KEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH 215 (367)
Q Consensus 155 K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~hL~~l~ea~ 215 (367)
..+++.++-+-|+=|.. ...+||.-|.+.=..|.++=.++|+ ..||.||..++|+.
T Consensus 85 qr~~L~~as~~kKP~~~--~~~~lL~Pl~~~i~~i~~~ke~nR~---s~~fNHLsavsEgi 140 (312)
T PF01213_consen 85 QRKFLLVASKCKKPDQS--ELQELLKPLSEAIQKIQEFKEKNRG---SKFFNHLSAVSEGI 140 (312)
T ss_dssp HHHHHHHHHHBE---HH--HHHHHCHHHHHHHHHHHHHHHTTTT---STTHHHHHHHHCGG
T ss_pred HHHHHHHHHccCCCChh--hHHHHHHHHHHHHHHHHHHHhccCC---CchHHHHHHHHHhh
Confidence 45678888888888776 5666666666555555555555554 67999999999985
No 17
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=81 Score=27.97 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=15.7
Q ss_pred HHHhhhhhhhhHHhHHHHHHhhh
Q 017730 234 AVSAYDKTLEHVETLDSAQAKFD 256 (367)
Q Consensus 234 av~ayD~a~e~~~~Ld~A~~kf~ 256 (367)
-++--|...++.+.|++|..+++
T Consensus 94 ~lqQIDaiddst~kLEaAa~~Ld 116 (120)
T KOG4559|consen 94 MLQQIDAIDDSTDKLEAAAAKLD 116 (120)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555666777777888877765
No 18
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.52 E-value=2.3e+02 Score=30.63 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=31.8
Q ss_pred hhhhhhhHhHHHHHHhhhhhccChHHHHHHHH-HHHHhhhhcHHHHHHHHHHHHHh
Q 017730 129 EDWNKYRESFYNRCRTRADEESEPTMKEKLIS-LARKVKKIDDEMESHYELLKEIQ 183 (367)
Q Consensus 129 ~EW~~iRp~Ff~Rcq~RAd~E~DP~~K~kL~~-L~RkLK~iDeev~~hneLL~~i~ 183 (367)
.+|.+.|.+|=.+.++--..+.+........+ +-||+++.++.+.+-.+=|..++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999888876554555554444332 33444444444444444444333
No 19
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=32.33 E-value=4.1e+02 Score=29.51 Aligned_cols=134 Identities=15% Similarity=0.284 Sum_probs=90.1
Q ss_pred hhhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHHHH
Q 017730 128 REDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRY 207 (367)
Q Consensus 128 s~EW~~iRp~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~h 207 (367)
...-+++-++.+.+++++.....+|.. ..+..++..++++.+.|+.=+..+.++++..+.++.-+...|.+-+.-
T Consensus 212 ~~~L~~~~~~lg~~i~~~l~~~~~~~L-~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~---- 286 (806)
T PF05478_consen 212 SSDLDNIGSLLGGDIQDQLGSNVYPAL-DSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNT---- 286 (806)
T ss_pred HHHHHhccchhhHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 566778889999999999999999985 788899999999999999999999999999988876666655443221
Q ss_pred HHHHhhh-cCChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHhccCChHHHH
Q 017730 208 LSLVSET-HDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLIL 286 (367)
Q Consensus 208 L~~l~ea-~d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~~eLDsaLvL 286 (367)
... +.+. .|.+.-..++ +..++ . +.=+-|+++.--+.|+++-+. -+.-
T Consensus 287 ----l~~~C~~~-----------~C~~i~~~~~-----~l~l~---~---~~~qLP~v~~~l~~l~~v~~~-----nl~~ 335 (806)
T PF05478_consen 287 ----LQDLCTNR-----------ECNSILSSLD-----ILQLD---A---DFSQLPNVTSQLNNLEEVIKT-----NLSS 335 (806)
T ss_pred ----HHhhCCCh-----------hhHHHHHhcc-----ccccC---C---CcccCCChHHHHHHHHHHHhc-----cHHH
Confidence 111 2111 3443332221 11222 2 233567777777777766554 3555
Q ss_pred HHHHHHHhhhh
Q 017730 287 LINGAWASAKA 297 (367)
Q Consensus 287 lisKAwaaAKE 297 (367)
++.++++.-.+
T Consensus 336 ~v~~~~~~~~~ 346 (806)
T PF05478_consen 336 IVQEGNSRFND 346 (806)
T ss_pred HHHHHHHHHHH
Confidence 66677665543
No 20
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=31.25 E-value=3.5e+02 Score=26.58 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHhHHHH---HHhhhhhhCCcChHHHHHHHHHHHHhccCChHHHHHHH-----HHH
Q 017730 221 CDAVARLATRCLSAVSAYDKTLEHVETLDSA---QAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLIN-----GAW 292 (367)
Q Consensus 221 rd~LarL~~~clsav~ayD~a~e~~~~Ld~A---~~kf~DILnspSld~ac~KId~LA~~~eLDsaLvLlis-----KAw 292 (367)
.+.|-.|...|......++...++......+ ..++-|||.-|.+=+.|-+ +|.-+.||-|..- +-|
T Consensus 66 ~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~------~g~y~eALel~~~~~~L~~~~ 139 (338)
T PF04124_consen 66 LDSLPELDEACQRFSSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIR------NGNYSEALELSAHVRRLQSRF 139 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh------cccHhhHHHHHHHHHHHHHhc
Confidence 4678888999999999888887776554444 3567789999988887765 4444444444322 222
Q ss_pred Hhhhhccc----hhhhHHHHHHHHHHHHHhhhhhcCchhHHHHHHHhccCC
Q 017730 293 ASAKASQT----MKNEVKDIMYCLYKATKSSLRGIAPKEIKLLKYLLNIID 339 (367)
Q Consensus 293 aaAKES~~----~kdEvKDIM~hLY~tak~~l~r~~PKEiRILKyLLsIeD 339 (367)
....--.. +...++..+.+|-...+++ -++|.=+|++-||=.+..
T Consensus 140 ~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~--l~l~~~ik~v~~Lrrl~~ 188 (338)
T PF04124_consen 140 PNIPLVKSIAQEVEAALQQMLSQLINQLRTP--LKLPACIKTVGYLRRLPV 188 (338)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHhcc
Confidence 21111111 1234455556666666666 568999999999977743
No 21
>PF15565 Imm16: Immunity protein 16
Probab=31.14 E-value=3.5e+02 Score=23.45 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=53.4
Q ss_pred hhhcHHHHHHHHHHHHHhcCCcc--h---hHHHhhhccCCchhHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhh
Q 017730 166 KKIDDEMESHYELLKEIQDSPTD--I---NAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDK 240 (367)
Q Consensus 166 K~iDeev~~hneLL~~i~e~p~d--i---~aIVA~rRkDFT~EFF~hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD~ 240 (367)
.+-.+|++..+++|+++...+++ | ..+.... .|+ +=-|.-+|++- ..+.++.|.+++...=..+
T Consensus 9 l~~e~e~e~Fe~~L~~l~~~~d~~~I~~L~~~F~D~-~d~-eVmf~lvh~lE----~~~~~~~l~~l~~~~p~m~----- 77 (106)
T PF15565_consen 9 LENEEECEEFEEALNELAKYPDNDVIDDLCLIFDDE-TDH-EVMFSLVHFLE----HFDMEEYLPALAEAIPQMM----- 77 (106)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCHhHHHHHHHHhcCc-cch-HHHHHHHHHHH----HccHHHHHHHHHHHHHHHH-----
Confidence 34558899999999999988765 3 4444444 555 33344444443 2344555555554333322
Q ss_pred hhhhHHhH-HHHHHhhhhhhCCcChHHHHHH
Q 017730 241 TLEHVETL-DSAQAKFDDILNSPSVDVACEK 270 (367)
Q Consensus 241 a~e~~~~L-d~A~~kf~DILnspSld~ac~K 270 (367)
..+- +=|+.-+.-||||++..-.-+|
T Consensus 78 ----~~A~keWa~il~~RilNs~~~~~~y~~ 104 (106)
T PF15565_consen 78 ----INAPKEWAKILHYRILNSDDARKAYAK 104 (106)
T ss_pred ----HhhHHHHHHHHHHHHHcChHHHHHHHH
Confidence 2222 4566778899999976554444
No 22
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=30.26 E-value=3.6e+02 Score=23.29 Aligned_cols=21 Identities=5% Similarity=0.289 Sum_probs=16.6
Q ss_pred hhhhccchhhhHHHHHHHHHH
Q 017730 294 SAKASQTMKNEVKDIMYCLYK 314 (367)
Q Consensus 294 aAKES~~~kdEvKDIM~hLY~ 314 (367)
+|...-.+++|+++|++|+..
T Consensus 81 ~Al~~G~T~~ei~Evl~q~~~ 101 (123)
T TIGR02425 81 ATANTGVTEDDIKEVLLHVAI 101 (123)
T ss_pred HHHHcCCCHHHHHHHHHHHHH
Confidence 444567999999999999864
No 23
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.02 E-value=2.6e+02 Score=29.59 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=70.3
Q ss_pred chhhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCc--hhH
Q 017730 127 FREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFT--GEF 204 (367)
Q Consensus 127 Fs~EW~~iRp~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT--~EF 204 (367)
++++|+.+-.+-|+.|.+..-.-++-..+-++.+-.+.+..+++.|+...+-+..|+..=.+|-..-.++|...+ ++=
T Consensus 69 w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~ 148 (569)
T PRK04778 69 WRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDL 148 (569)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999988889999999999999999999998888888877766666555566666554 456
Q ss_pred HHHHHHHhhh
Q 017730 205 FRYLSLVSET 214 (367)
Q Consensus 205 F~hL~~l~ea 214 (367)
|+.++--+-+
T Consensus 149 y~~~rk~ll~ 158 (569)
T PRK04778 149 YRELRKSLLA 158 (569)
T ss_pred HHHHHHHHHh
Confidence 6677655544
No 24
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=29.70 E-value=2.5e+02 Score=21.29 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=52.1
Q ss_pred hhhccChHHHHHHHHHHHHhhhh-cHHHHHHHHHHHHHhc---CCcchhHHHhhhcc-CCchhHHHHHHHHhhhcC--Ch
Q 017730 146 ADEESEPTMKEKLISLARKVKKI-DDEMESHYELLKEIQD---SPTDINAVVARRRK-DFTGEFFRYLSLVSETHD--SL 218 (367)
Q Consensus 146 Ad~E~DP~~K~kL~~L~RkLK~i-Deev~~hneLL~~i~e---~p~di~aIVA~rRk-DFT~EFF~hL~~l~ea~d--~~ 218 (367)
||-+-++..+..+..+.+.+-.. +.+.++-.+++..... .+..+..+...... +=-..+++.+..++.+-. ++
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~aDG~~~~ 91 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAEAGDLAALAALLKELPDAELREALLAALWEVALADGELDP 91 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCCH
Confidence 68889999999999888887653 2345555555555554 34444444433322 233467777777776643 45
Q ss_pred hhHHHHHHHHH
Q 017730 219 EDCDAVARLAT 229 (367)
Q Consensus 219 ~~rd~LarL~~ 229 (367)
.++.-|.+++.
T Consensus 92 ~E~~~l~~l~~ 102 (104)
T cd07177 92 EERALLRRLAD 102 (104)
T ss_pred HHHHHHHHHHh
Confidence 67777777764
No 25
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=29.67 E-value=48 Score=27.47 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=25.3
Q ss_pred hHHHHHHHhccCChHHHHHHHHhccCCCC
Q 017730 327 EIKLLKYLLNIIDPEERFSALATAFSPGS 355 (367)
Q Consensus 327 EiRILKyLLsIeDPeER~~aL~~AFtPG~ 355 (367)
---++..||++.||+|-..-|++-|||-+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~t~~e 33 (88)
T TIGR02531 5 LDELFDAILTLKNREECYRFFDDIATINE 33 (88)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCHHH
Confidence 34578899999999999999999999954
No 26
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=29.07 E-value=2.2e+02 Score=23.44 Aligned_cols=87 Identities=24% Similarity=0.315 Sum_probs=56.1
Q ss_pred hhhhccChHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhH----HHHHHHHhhhc--CC
Q 017730 145 RADEESEPTMKEKLISLARKVKK-IDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEF----FRYLSLVSETH--DS 217 (367)
Q Consensus 145 RAd~E~DP~~K~kL~~L~RkLK~-iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EF----F~hL~~l~ea~--d~ 217 (367)
.||-.-+|..+..+..+.+..-. -+++++...+.+......+.++..++..-+..|+.+. ++.+..++.|= =+
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG~~~ 114 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYADGEIS 114 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTTC-S
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCC
Confidence 47888889999998888754444 4677788888888888888888888888888776543 33333333331 13
Q ss_pred hhhHHHHHHHHHHH
Q 017730 218 LEDCDAVARLATRC 231 (367)
Q Consensus 218 ~~~rd~LarL~~~c 231 (367)
+.+++-|.+++..+
T Consensus 115 ~~E~~~l~~ia~~L 128 (140)
T PF05099_consen 115 PEEQEFLRRIAEAL 128 (140)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc
Confidence 66677777766543
No 27
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=28.85 E-value=12 Score=37.36 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=14.9
Q ss_pred hhhhHhHHHHHHhhhhh
Q 017730 132 NKYRESFYNRCRTRADE 148 (367)
Q Consensus 132 ~~iRp~Ff~Rcq~RAd~ 148 (367)
-++|||||.|||=....
T Consensus 134 GRlRP~Fl~vC~P~~~~ 150 (317)
T KOG3030|consen 134 GRLRPHFLDVCQPDGTD 150 (317)
T ss_pred cCCCCCeeccccCCccC
Confidence 46899999999988876
No 28
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=27.86 E-value=1.3e+02 Score=28.60 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhh
Q 017730 207 YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDIL 259 (367)
Q Consensus 207 hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DIL 259 (367)
-|+.++.+.. .++|.++.+|++.....++..|.+..+-. ..+|+.-|.+.+
T Consensus 141 DL~~liss~p-~~~kk~l~~La~~lf~~ie~LD~Aar~K~-~~~a~~~Y~~t~ 191 (202)
T PF05757_consen 141 DLNTLISSKP-KDEKKALTDLANKLFDNIEELDYAARSKD-VPEAEKYYADTV 191 (202)
T ss_dssp HHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 3566666653 78899999999999999999999988776 566666666654
No 29
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=27.61 E-value=4.6e+02 Score=23.67 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhH
Q 017730 139 YNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINA 191 (367)
Q Consensus 139 f~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~a 191 (367)
..+.+.-...-.|+.+..++.++.+-.+ +++..++++|.++..
T Consensus 84 i~~i~~~~~~i~~~~~~~~~~~~~~~~~----------~I~~~v~~~P~~l~~ 126 (199)
T PF10112_consen 84 IRRIEKAIKRIRDLEMIEKVSRIEKIAR----------RIFKYVEKDPERLTQ 126 (199)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHHHHHHHCHHhHHH
Confidence 3444555555556665555555555554 456777788887643
No 30
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=27.46 E-value=4.3e+02 Score=29.38 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHHHHHHHHhhhcCChhhHHHHHHHHHHHHH
Q 017730 154 MKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLS 233 (367)
Q Consensus 154 ~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~hL~~l~ea~d~~~~rd~LarL~~~cls 233 (367)
....+-+|.+.+-.-|++|..-..|.++|+..-.+=++..+.-|++.+.- |+++..+.+ + .....+.....-+..-.
T Consensus 419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~-q~e~~~~Q~-~-~e~~~~e~~e~~~al~e 495 (607)
T KOG0240|consen 419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDI-QQELSEIQE-E-NEAAKDEVKEVLTALEE 495 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHH-H-HHHHHHHHHHHHHHHHH
Confidence 45566778888888999999999999999987777666666666665544 455666655 2 22223336666666777
Q ss_pred HHHhhhhhhhhHH---h--HHHHHHhhhhhhCCcChHHHHHHHHHHHHhccCC
Q 017730 234 AVSAYDKTLEHVE---T--LDSAQAKFDDILNSPSVDVACEKIKSLAKAKELD 281 (367)
Q Consensus 234 av~ayD~a~e~~~---~--Ld~A~~kf~DILnspSld~ac~KId~LA~~~eLD 281 (367)
.+.+||..++.++ . +..+-..++...++++.-...--+..+...|++-
T Consensus 496 l~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~ 548 (607)
T KOG0240|consen 496 LAVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRKDLGEIG 548 (607)
T ss_pred HHHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHhhhcccc
Confidence 8889999988876 2 4556667778888887666666666666666654
No 31
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=26.68 E-value=3.4e+02 Score=21.83 Aligned_cols=99 Identities=9% Similarity=0.109 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCcchhHHHhhhccCCchhHHHHHHHHhhhc--------CChhhHHHHHHHHHHHHHHHHhhhhhhhhHHh
Q 017730 176 YELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH--------DSLEDCDAVARLATRCLSAVSAYDKTLEHVET 247 (367)
Q Consensus 176 neLL~~i~e~p~di~aIVA~rRkDFT~EFF~hL~~l~ea~--------d~~~~rd~LarL~~~clsav~ayD~a~e~~~~ 247 (367)
+.+...+.+....+-+.+-..-..|-..|.+....+.... ++|+.+..|..|....-.-++..|....-...
T Consensus 16 ~~l~~~l~~~e~~~RgYlltgd~~~l~~y~~~~~~~~~~l~~L~~l~~~~p~q~~~l~~l~~~~~~~~~~~~~~i~~~~~ 95 (138)
T PF05227_consen 16 EQLESALLDQESALRGYLLTGDPEFLEPYQEARARLEKALAQLRQLVQDNPEQQERLDQLEELIDQWRELLEPQIALRKS 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-GG
T ss_pred HHHHHHHHHHHHHhhHHHHcCCHhhhchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555566677777777777766666544444332 78888988888888877777777766655544
Q ss_pred --HHHHHHhhhhhhCCcChHHHHHHHHHH
Q 017730 248 --LDSAQAKFDDILNSPSVDVACEKIKSL 274 (367)
Q Consensus 248 --Ld~A~~kf~DILnspSld~ac~KId~L 274 (367)
.++|...+...-...-++.....|+.+
T Consensus 96 ~~~~~a~~~~~~~~~~~~~~~i~~~~~~~ 124 (138)
T PF05227_consen 96 GGMEAARALVNSGEGKQLMDQIRQLLEQI 124 (138)
T ss_dssp -GHHHHHHHHHHHGGG-HHHHHHHHHHHH
T ss_pred cChHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 566666666555444455555555544
No 32
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=26.52 E-value=2.5e+02 Score=26.28 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=51.2
Q ss_pred hhhhhccChHHHHHHHHHHHHhhh--hcHHHHHHHHHHHHHhcCCcchhHHHhhhc-cCCchhHHHHHHHHhhhcCChhh
Q 017730 144 TRADEESEPTMKEKLISLARKVKK--IDDEMESHYELLKEIQDSPTDINAVVARRR-KDFTGEFFRYLSLVSETHDSLED 220 (367)
Q Consensus 144 ~RAd~E~DP~~K~kL~~L~RkLK~--iDeev~~hneLL~~i~e~p~di~aIVA~rR-kDFT~EFF~hL~~l~ea~d~~~~ 220 (367)
.+||-.-|...+++ +..+|.+ +|.|.+ . +|..--..|.|+++|++.-+ .+---|+|.--..+++ -|++.+
T Consensus 90 AkADG~ID~~Er~~---I~~~l~~~g~d~e~~--~-~l~~eL~~P~d~~~la~~v~~~e~A~evY~aS~laid-~d~~~E 162 (188)
T PF04391_consen 90 AKADGHIDEEERQR---IEGALQELGLDAEER--A-WLQAELAAPLDPDALAAAVTDPEQAAEVYLASLLAID-VDTFAE 162 (188)
T ss_pred HHcCCCCCHHHHHH---HHHHHHHhCCCHHHH--H-HHHHHHhCCCCHHHHHHhCCCHHHHHHHHHHHHHHhC-CCCHHH
Confidence 46788889999998 4555555 455443 3 33444458999999998772 2333344433333333 377888
Q ss_pred HHHHHHHHHHH
Q 017730 221 CDAVARLATRC 231 (367)
Q Consensus 221 rd~LarL~~~c 231 (367)
|.-|..|+..+
T Consensus 163 r~YL~~LA~aL 173 (188)
T PF04391_consen 163 RAYLDELAQAL 173 (188)
T ss_pred HHHHHHHHHHh
Confidence 88888887654
No 33
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=26.43 E-value=98 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.414 Sum_probs=22.2
Q ss_pred hHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHH
Q 017730 137 SFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHY 176 (367)
Q Consensus 137 ~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hn 176 (367)
..|++.-+++. ||..|.-|.+++..-+..-++++.+-
T Consensus 18 ~~Y~~a~~~~~---~~~lk~~f~~~~~~~~~~~~~L~~~i 54 (111)
T PF09537_consen 18 EGYEKAAEKAE---DPELKSLFQEFAQERQQHAEELQAEI 54 (111)
T ss_dssp HHHHHHHHH-----SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554 78888887777766665555555443
No 34
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.36 E-value=5e+02 Score=27.66 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred chhhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCc--hhH
Q 017730 127 FREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFT--GEF 204 (367)
Q Consensus 127 Fs~EW~~iRp~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT--~EF 204 (367)
.+.+|..|=..=|.-|.+....-++-..+.++.+-...++.+++.++...+-+..|...=.++-..=.++|...+ .+=
T Consensus 65 w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~ 144 (560)
T PF06160_consen 65 WRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEK 144 (560)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999888999999998888888999999999999999999998888888888766666666666666654 355
Q ss_pred HHHHHHHhhh
Q 017730 205 FRYLSLVSET 214 (367)
Q Consensus 205 F~hL~~l~ea 214 (367)
|+.++--+.+
T Consensus 145 y~~lrk~ll~ 154 (560)
T PF06160_consen 145 YRELRKELLA 154 (560)
T ss_pred HHHHHHHHHH
Confidence 6666554433
No 35
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=25.85 E-value=8e+02 Score=25.87 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHHHHHhcC---CcchhHHHhhhccCCchhHHHHHHHHh-hhc---CChh---hHHHH
Q 017730 155 KEKLISLARKVKKIDDEMESHYELLKEIQDS---PTDINAVVARRRKDFTGEFFRYLSLVS-ETH---DSLE---DCDAV 224 (367)
Q Consensus 155 K~kL~~L~RkLK~iDeev~~hneLL~~i~e~---p~di~aIVA~rRkDFT~EFF~hL~~l~-ea~---d~~~---~rd~L 224 (367)
+.+|.++.+.-++...+++....-+++|.+. |.+.+.+-+.+++==..+ .+...+ .++ ++.+ ....+
T Consensus 174 ~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e---~i~~~~~~~~~~L~~~~~~~~~~~~ 250 (563)
T TIGR00634 174 RQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLE---KLRELSQNALAALRGDVDVQEGSLL 250 (563)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHH---HHHHHHHHHHHHHhCCccccccCHH
Confidence 4455566666667777777777778888754 444566665554321111 111111 111 1110 00244
Q ss_pred HHHHHHHHHHHHh-hhhhhhhH-HhHHHHHHhhhhhhCCcChHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 017730 225 ARLATRCLSAVSA-YDKTLEHV-ETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWA 293 (367)
Q Consensus 225 arL~~~clsav~a-yD~a~e~~-~~Ld~A~~kf~DILnspSld~ac~KId~LA~~~eLDsaLvLlisKAwa 293 (367)
..|+... ..++. ||..++.. +.++.|... ++++...+.+.+..=++||.-+--+..-+.
T Consensus 251 ~~l~~~~-~~l~~~~d~~~~~~~~~l~~~~~~---------l~d~~~~l~~~~~~l~~dp~~L~ele~RL~ 311 (563)
T TIGR00634 251 EGLGEAQ-LALASVIDGSLRELAEQVGNALTE---------VEEATRELQNYLDELEFDPERLNEIEERLA 311 (563)
T ss_pred HHHHHHH-HHHHHhhhHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4554322 22222 66555444 445555554 667777788887777888876655544443
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=25.40 E-value=7.9e+02 Score=25.64 Aligned_cols=138 Identities=13% Similarity=0.174 Sum_probs=80.1
Q ss_pred hHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHH------HHHHHHHHH---hcCC--cc--hhHHH------hh-h
Q 017730 137 SFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEME------SHYELLKEI---QDSP--TD--INAVV------AR-R 196 (367)
Q Consensus 137 ~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~------~hneLL~~i---~e~p--~d--i~aIV------A~-r 196 (367)
|+|..+-..-+. +|.-.+.+.+.+.-.|-+-..-.+ -...|...+ .++| .. +-+++ +. .
T Consensus 202 gll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~ 280 (503)
T PF10508_consen 202 GLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS 280 (503)
T ss_pred cHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence 678877777777 777777777776666654222111 112233333 3445 11 13332 22 1
Q ss_pred ccCCchhHHHHHHHHh---hhcCChhhHHHHHHHHHHHHHHHHhhhhh-hhhHHhHHHHHHhhhhhhCCcChHHHHHHHH
Q 017730 197 RKDFTGEFFRYLSLVS---ETHDSLEDCDAVARLATRCLSAVSAYDKT-LEHVETLDSAQAKFDDILNSPSVDVACEKIK 272 (367)
Q Consensus 197 RkDFT~EFF~hL~~l~---ea~d~~~~rd~LarL~~~clsav~ayD~a-~e~~~~Ld~A~~kf~DILnspSld~ac~KId 272 (367)
-..+...|-..+..+- ++-|....--++..+|.-| +.++...-. .....++..+=..+-+...+++.|--.+-++
T Consensus 281 ~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig-st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 281 PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG-STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh-CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 1222222222222222 2223334456777888777 777888887 6777788888888888888888888888887
Q ss_pred HHHH
Q 017730 273 SLAK 276 (367)
Q Consensus 273 ~LA~ 276 (367)
.|+.
T Consensus 360 al~~ 363 (503)
T PF10508_consen 360 ALAS 363 (503)
T ss_pred HHHH
Confidence 7764
No 37
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=23.84 E-value=1.6e+02 Score=26.18 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=29.7
Q ss_pred hhhhHHhHHHHHHhhhhhhCCcChHHHHHH--HHHHHH--hccCChHHH
Q 017730 241 TLEHVETLDSAQAKFDDILNSPSVDVACEK--IKSLAK--AKELDSSLI 285 (367)
Q Consensus 241 a~e~~~~Ld~A~~kf~DILnspSld~ac~K--Id~LA~--~~eLDsaLv 285 (367)
..++...+..+-.++.++|.+|++....++ |+++.+ .+.+|+.++
T Consensus 27 v~~~l~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~ 75 (180)
T PRK13441 27 YGEFLDLVCQIYESAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFE 75 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHH
Confidence 334444444444456789999998877776 888765 456886553
No 38
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=23.62 E-value=87 Score=29.27 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=13.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHH
Q 017730 268 CEKIKSLAKAKELDSSLILLINGAW 292 (367)
Q Consensus 268 c~KId~LA~~~eLDsaLvLlisKAw 292 (367)
..=|+.+.+.|.|++.|---|.+|.
T Consensus 62 ~~il~~i~eqgkLt~eL~~~I~~a~ 86 (193)
T PF09371_consen 62 ESILKSIEEQGKLTPELKQAIENAT 86 (193)
T ss_dssp HHHHHHHHHTT---HHHHHHHHH--
T ss_pred HHHHHHHHHcccCCHHHHHHHHhcC
Confidence 3446677788888887666555553
No 39
>PRK08055 chorismate mutase; Provisional
Probab=23.38 E-value=5e+02 Score=24.29 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCcChHHHHHHH
Q 017730 220 DCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKI 271 (367)
Q Consensus 220 ~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnspSld~ac~KI 271 (367)
-|..|.+|++.+|.++..|..+-+... ..-...|-..++.|.|-+++++.
T Consensus 120 vRp~l~~L~~~il~~ia~~l~~~g~~~--~~~~~~f~~~i~~~~ls~~dk~~ 169 (181)
T PRK08055 120 VRQRIRQLDTQILIQIAQRLKVCGPFS--HGDMAWFRSTINQPNLSEADKSA 169 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC--cchHHHHHHHHhcccCCHHHHHH
Confidence 489999999999999998887622222 12267899999999999988764
No 40
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.51 E-value=4.8e+02 Score=24.41 Aligned_cols=89 Identities=18% Similarity=0.324 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHHHHHHHHhhhcCChhhHHHHHHHHHHHHH
Q 017730 154 MKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLS 233 (367)
Q Consensus 154 ~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~hL~~l~ea~d~~~~rd~LarL~~~cls 233 (367)
.|....++....+..+.++.+|..++.++.+.=.+++.-+-.-+ ++...+..- ......+++++-+.|-+
T Consensus 101 lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~--------~~~~~~~~~--ke~~~~ei~~lks~~~~ 170 (190)
T PF05266_consen 101 LKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQ--------RQAAKLKEK--KEAKDKEISRLKSEAEA 170 (190)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------HHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34444455666677777777775444444433333322222111 111111100 11112445555444333
Q ss_pred HHHhhhhhhhhHHhHHHHHHhhhhhhCCc
Q 017730 234 AVSAYDKTLEHVETLDSAQAKFDDILNSP 262 (367)
Q Consensus 234 av~ayD~a~e~~~~Ld~A~~kf~DILnsp 262 (367)
+ .+.+..++..|++++..|
T Consensus 171 l----------~~~~~~~e~~F~~~~aaP 189 (190)
T PF05266_consen 171 L----------KEEIENAELEFQSVAAAP 189 (190)
T ss_pred H----------HHHHHHHHHHHHHHhcCC
Confidence 3 356899999999999887
No 41
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=22.08 E-value=4e+02 Score=21.03 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=56.6
Q ss_pred hhhhccChHHHHHHHHHHHHhhhhc-HHHHHHHHHHHHHhcCCcchhHHHhhhccCCch----hHHHHHHHHhhhc--CC
Q 017730 145 RADEESEPTMKEKLISLARKVKKID-DEMESHYELLKEIQDSPTDINAVVARRRKDFTG----EFFRYLSLVSETH--DS 217 (367)
Q Consensus 145 RAd~E~DP~~K~kL~~L~RkLK~iD-eev~~hneLL~~i~e~p~di~aIVA~rRkDFT~----EFF~hL~~l~ea~--d~ 217 (367)
+||-.-++..+..+..+.+..-.++ ++..+--+......+.+.++..++..-+..|+. .|.+.|-.++-+= =+
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~ADG~~~ 90 (104)
T cd07313 11 RADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYADGELD 90 (104)
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 5788889999999998888864555 566666666777777888898888887777743 2333333333332 23
Q ss_pred hhhHHHHHHHHH
Q 017730 218 LEDCDAVARLAT 229 (367)
Q Consensus 218 ~~~rd~LarL~~ 229 (367)
+.+.+-|.+++.
T Consensus 91 ~~E~~~l~~ia~ 102 (104)
T cd07313 91 EYEEHLIRRVAD 102 (104)
T ss_pred HHHHHHHHHHHh
Confidence 566666666654
No 42
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=2.8e+02 Score=27.63 Aligned_cols=56 Identities=29% Similarity=0.608 Sum_probs=30.4
Q ss_pred chhHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhHH-------------hHHHHHHhhhhhhCCcChHHH
Q 017730 201 TGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVE-------------TLDSAQAKFDDILNSPSVDVA 267 (367)
Q Consensus 201 T~EFF~hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~~-------------~Ld~A~~kf~DILnspSld~a 267 (367)
.|++|+||-.+. .+ ++|.+.+. +..+||-++++-.. +|+-+ .-|.+|+|+| +.|
T Consensus 124 Kgdy~rylae~~---sg-~erke~~~------~sl~aYk~a~~ia~~~l~PthPirLgLaLnfS-vf~yeilnsP--e~a 190 (247)
T KOG0841|consen 124 KGDYYRYLAEFA---SG-DERKEAAD------QSLEAYKEASEIAKAELQPTHPIRLGLALNFS-VFYYEILNSP--ERA 190 (247)
T ss_pred cchhHHHHHHhc---ch-hHHHHHHH------HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-HHHHHHHcCh--HHH
Confidence 367777776666 23 33333222 24455655555444 23333 3448999999 355
Q ss_pred HH
Q 017730 268 CE 269 (367)
Q Consensus 268 c~ 269 (367)
|.
T Consensus 191 c~ 192 (247)
T KOG0841|consen 191 CS 192 (247)
T ss_pred HH
Confidence 54
No 43
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=21.03 E-value=1.7e+02 Score=28.86 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=39.3
Q ss_pred hHHHHHHhhhhhhC-CcChHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhccchhhhHHHHHHHHH
Q 017730 247 TLDSAQAKFDDILN-SPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMYCLY 313 (367)
Q Consensus 247 ~Ld~A~~kf~DILn-spSld~ac~KId~LA~~~eLDsaLvLlisKAwaaAKES~~~kdEvKDIM~hLY 313 (367)
.+++|+..|+.=-| +-+++.-..+++...++||+|-..- --.+.=.|..++++|..||-+|=
T Consensus 168 df~AAk~L~~~KCNkCHTl~SVed~lrkYkKkGkid~iVk-----rMqa~PnSgIt~eDa~~I~~YLn 230 (233)
T PF10643_consen 168 DFAAAKALFDRKCNKCHTLKSVEDALRKYKKKGKIDKIVK-----RMQAVPNSGITDEDAPQIMMYLN 230 (233)
T ss_dssp -HHHHHHHHHHHTTSSS-SHHHHHHHHHTTTTT-HHHHHH-----HHHHSTT----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccccccHHHHHHHHHHHHhcCCHHHHHH-----HHHhCCCCCCCHHHHHHHHHHHH
Confidence 35666666665444 3477777788888899999986432 23456789999999999998874
No 44
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=20.50 E-value=4.3e+02 Score=27.17 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=63.8
Q ss_pred cCCchhHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCC-cChHHHHHHHHHHHH
Q 017730 198 KDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNS-PSVDVACEKIKSLAK 276 (367)
Q Consensus 198 kDFT~EFF~hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILns-pSld~ac~KId~LA~ 276 (367)
--|--+|++||..+++.++.-- +-+-.+|+.. +| +..+.++.+-+.|..- ..+...-++|..|.+
T Consensus 78 ~~~E~d~~~~l~~~v~d~~rri-~~~kerL~e~----~e---------e~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~ 143 (319)
T KOG0796|consen 78 YGYEWDALEILERFVADVDRRI-EKAKERLAET----VE---------ERSEEAARKAEKVHELEEKIGKLLEKAEELGE 143 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhh----hh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456678888888777765431 1222333333 21 2233333332222111 135667788999999
Q ss_pred hccCChHHHHHHHHHHHhhhhccchhh-hHHHHHHHHHHHHHhhhhhcCchhH-HHHHHHhccCChHHHH
Q 017730 277 AKELDSSLILLINGAWASAKASQTMKN-EVKDIMYCLYKATKSSLRGIAPKEI-KLLKYLLNIIDPEERF 344 (367)
Q Consensus 277 ~~eLDsaLvLlisKAwaaAKES~~~kd-EvKDIM~hLY~tak~~l~r~~PKEi-RILKyLLsIeDPeER~ 344 (367)
.|.+|-|--++. +...-+. |-.++.-.-+.++-++...+++=+| -|----|++.|-..|+
T Consensus 144 eG~Veeaq~~~~--------e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d~Rl 205 (319)
T KOG0796|consen 144 EGNVEEAQKAMK--------EVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDADRRL 205 (319)
T ss_pred cCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccchHHHH
Confidence 999998754432 2222222 3333333334445555444444333 3445567777777665
No 45
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=20.04 E-value=1.1e+02 Score=31.92 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.7
Q ss_pred HhhhhccchhhhHHHHHHHHHHHHHhhhhh
Q 017730 293 ASAKASQTMKNEVKDIMYCLYKATKSSLRG 322 (367)
Q Consensus 293 aaAKES~~~kdEvKDIM~hLY~tak~~l~r 322 (367)
+-..+.++.|||+..||++.|+-|-+++.+
T Consensus 375 ~~~q~q~lsKedIvkiMAYayRmA~Eq~e~ 404 (407)
T PF04625_consen 375 AMSQDQSLSKEDIVKIMAYAYRMANEQMES 404 (407)
T ss_pred hhhhhcccCHHHHHHHHHHHHHHHHHhhhh
Confidence 445578999999999999999999988754
Done!