Query 017730
Match_columns 367
No_of_seqs 39 out of 41
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 04:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etr_A Putative uncharacterize 65.4 20 0.00068 29.9 7.3 127 220-350 12-151 (153)
2 4etr_A Putative uncharacterize 44.2 31 0.0011 28.7 5.1 31 134-167 25-55 (153)
3 2d1l_A Metastasis suppressor p 39.9 1.6E+02 0.0055 27.4 9.6 24 118-141 115-143 (253)
4 2l81_A Enhancer of filamentati 38.6 83 0.0028 28.4 7.1 78 120-197 47-149 (176)
5 1vyk_A Oxygen-evolving enhance 37.5 54 0.0018 28.5 5.6 51 207-259 88-138 (149)
6 1s0p_A CAP, adenylyl cyclase-a 36.9 24 0.00082 31.4 3.3 55 156-215 42-96 (176)
7 3u1f_A Methionyl-tRNA syntheta 33.4 3.4E+02 0.012 26.3 12.1 147 165-339 338-501 (542)
8 1i84_S Smooth muscle myosin he 32.1 64 0.0022 35.2 6.3 15 120-135 801-815 (1184)
9 3zsu_A TLL2057 protein, cyanoq 29.4 1.7E+02 0.0059 25.0 7.3 75 171-246 22-104 (130)
10 2pv4_A Uncharacterized protein 27.7 83 0.0028 27.7 5.1 34 175-208 42-76 (145)
11 2yfa_A MCPS, methyl-accepting 26.5 2.9E+02 0.01 23.3 11.5 70 207-278 64-133 (258)
12 3ls0_A SLL1638 protein, PSBQ; 25.3 1.7E+02 0.0058 25.2 6.5 82 151-246 18-107 (133)
13 2gyq_A YCFI, putative structur 22.0 3.9E+02 0.013 23.2 10.5 120 141-277 34-162 (173)
14 3uzd_A 14-3-3 protein gamma; s 21.2 69 0.0024 29.9 3.6 13 255-269 183-195 (248)
15 2gs4_A Protein YCIF; stress pr 20.7 4.1E+02 0.014 22.9 11.5 120 141-277 27-156 (166)
No 1
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=65.36 E-value=20 Score=29.91 Aligned_cols=127 Identities=19% Similarity=0.219 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCc--ChHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhh
Q 017730 220 DCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLINGAWASAKA 297 (367)
Q Consensus 220 ~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnsp--Sld~ac~KId~LA~~~eLDsaLvLlisKAwaaAKE 297 (367)
--+.|-.|=..|..++++|..+.+..+.- .-...|..+.+.- ..++....|..|-..=.-.+++.-.+.++|...|-
T Consensus 12 ~i~~Ln~Li~~~~D~~~gY~~aae~~~d~-~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~~hr~~~~lks 90 (153)
T 4etr_A 12 TLDVLNDLLQTSKDGEAGFHACAEDLRDP-QLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKS 90 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 34566777788999999999998877532 3344566555433 23444444444443444677888899999998775
Q ss_pred ccchh------hhH---HHHHHHHHHHHHhhhhhcCchhHH--HHHHHhccCChHHHHHHHHhc
Q 017730 298 SQTMK------NEV---KDIMYCLYKATKSSLRGIAPKEIK--LLKYLLNIIDPEERFSALATA 350 (367)
Q Consensus 298 S~~~k------dEv---KDIM~hLY~tak~~l~r~~PKEiR--ILKyLLsIeDPeER~~aL~~A 350 (367)
.=... +++ -|....-|..+ ++.-.|+++| |-+.+-.|..=-+++..|.+|
T Consensus 91 ~~~~~~~~~iL~~~~~gE~~~~~~Y~~a---l~~~lp~~~r~ll~~q~~~~~~~~d~~~~Lr~~ 151 (153)
T 4etr_A 91 LVTGKDEEAVLNECERGEDVAKHRYQAA---LEKSLPAEIHQVIERQYQGVLRHHDRVRALRDA 151 (153)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 43222 222 23334445544 4455888886 446666777777777777664
No 2
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=44.23 E-value=31 Score=28.69 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=20.9
Q ss_pred hhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhh
Q 017730 134 YRESFYNRCRTRADEESEPTMKEKLISLARKVKK 167 (367)
Q Consensus 134 iRp~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~ 167 (367)
-.-.+|+++-+.+ .||..|.-|...+..-+.
T Consensus 25 D~~~gY~~aae~~---~d~~lk~~f~~~a~~~~~ 55 (153)
T 4etr_A 25 DGEAGFHACAEDL---RDPQLKAAMLEQSRDCAA 55 (153)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHH
Confidence 3456788876665 689888887666655443
No 3
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=39.91 E-value=1.6e+02 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.531 Sum_probs=17.5
Q ss_pred cccchhhhc-----chhhhhhhhHhHHHH
Q 017730 118 VKQWRKYLV-----FREDWNKYRESFYNR 141 (367)
Q Consensus 118 ~~dWrkLLa-----Fs~EW~~iRp~Ff~R 141 (367)
.+.|.|++. |.+++.++|...-++
T Consensus 115 ~e~d~k~~~~~~K~~~~~~k~~r~elkk~ 143 (253)
T 2d1l_A 115 MEEWKKVANQLDKDHAKEYKKARQEIKKK 143 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 689999998 556777777665443
No 4
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=38.60 E-value=83 Score=28.35 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=56.9
Q ss_pred cchhhhcchhhhhhhhHh----------HHHH---HHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHh---
Q 017730 120 QWRKYLVFREDWNKYRES----------FYNR---CRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQ--- 183 (367)
Q Consensus 120 dWrkLLaFs~EW~~iRp~----------Ff~R---cq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~--- 183 (367)
+||.+=.-...|+.||.. |... .-.-|..-.|+..-.||.++..+|.....-+.+|.+-|....
T Consensus 47 ~WR~~~~le~~i~~I~~a~~~v~~Sl~efL~FArga~~nA~~~~d~~L~~kl~rqLq~l~ds~qiL~~~~~~Ld~~~Wsl 126 (176)
T 2l81_A 47 DWRCYGYMERHINEIRTAVDKVELFLKEYLHFVKGAVANAACLPELILHNKMKRELQRVEDSHQILSQTSHDLNECSWSL 126 (176)
T ss_dssp CTTCHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcH
Confidence 899976668889998873 3333 333445567888899999999999999999999988887653
Q ss_pred ---------cCCcchhHHHhhhc
Q 017730 184 ---------DSPTDINAVVARRR 197 (367)
Q Consensus 184 ---------e~p~di~aIVA~rR 197 (367)
..|.|++.+|+--|
T Consensus 127 ~~La~~~~~~~~DdLDrfVmvaR 149 (176)
T 2l81_A 127 NILAINKPQNKCDDLDRFVMVAK 149 (176)
T ss_dssp HHHTTCCSSCTTCHHHHHHHHHT
T ss_pred HHHccCCCCCCcchHHHHHHhhc
Confidence 34566666666554
No 5
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=37.55 E-value=54 Score=28.54 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhh
Q 017730 207 YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDIL 259 (367)
Q Consensus 207 hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DIL 259 (367)
-|+.++.+. .+++|.++.+|++.....++.-|.+..... ...|+..|++..
T Consensus 88 Dl~~li~sl-p~~~kk~l~~La~~Lf~~le~LD~AAr~kd-~~~a~~~Y~~t~ 138 (149)
T 1vyk_A 88 DLKTVISAK-PKDEKKSLQELTSKLFSSIDNLDHAAKIKS-PTEAEKYYGQTV 138 (149)
T ss_dssp HHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 355666666 478899999999999999999999887766 555666665543
No 6
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=36.87 E-value=24 Score=31.44 Aligned_cols=55 Identities=29% Similarity=0.455 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHHHHHHHHhhhc
Q 017730 156 EKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH 215 (367)
Q Consensus 156 ~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~hL~~l~ea~ 215 (367)
.+++.++-+-|+=|..- ...||+-|.+.=..+.++=.++| ..+||.||..++|+.
T Consensus 42 r~~L~~as~~kKP~~~~--~~~lL~pl~~~i~~i~~~re~nR---~s~~fNHLsavsEgi 96 (176)
T 1s0p_A 42 KALINTASQSKKPSQET--LLELIKPLNNFAAEVGKIRDSNR---SSKFFNNLSAISESI 96 (176)
T ss_dssp HHHHHHHHHEECCCHHH--HHHHTHHHHHHHHHHHHHHHTCT---TCTTHHHHHHHHTSG
T ss_pred HHHHHHHHhcCCCCchh--HHHHHHHHHHHHHHHHHHHHccC---CCchhhHHHHHHHhh
Confidence 35666677776666322 34566666555444555555555 567999999999985
No 7
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=33.39 E-value=3.4e+02 Score=26.28 Aligned_cols=147 Identities=11% Similarity=0.163 Sum_probs=76.6
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCcc--hhHHHhhhccCCchhHHHHHHHHhhhc---C---------ChhhHHHHHHHHHH
Q 017730 165 VKKIDDEMESHYELLKEIQDSPTD--INAVVARRRKDFTGEFFRYLSLVSETH---D---------SLEDCDAVARLATR 230 (367)
Q Consensus 165 LK~iDeev~~hneLL~~i~e~p~d--i~aIVA~rRkDFT~EFF~hL~~l~ea~---d---------~~~~rd~LarL~~~ 230 (367)
+++..-|.=|+.-+-..-...+.+ .+.++++.+.+|-.-+...++.+.... + .+.++.-+.++..
T Consensus 338 i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~- 416 (542)
T 3u1f_A 338 AEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKD- 416 (542)
T ss_dssp HHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHH-
T ss_pred HhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHhhh-
Confidence 444556666664332222234444 378888888888877766666554332 1 1223433333332
Q ss_pred HHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhccchhhhHHHHHH
Q 017730 231 CLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMY 310 (367)
Q Consensus 231 clsav~ayD~a~e~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~~eLDsaLvLlisKAwaaAKES~~~kdEvKDIM~ 310 (367)
+++.++.+.++.+ ...|.+.|-+++... .--+-..|-|.-+|+. ++++..|+|
T Consensus 417 ---~~~~~~~~~~~~~-----------------~~~a~~~i~~~~~~~----n~Y~~~~~pw~l~k~d---~~~~~~~l~ 469 (542)
T 3u1f_A 417 ---LPGTADHYYLIPD-----------------IQKAIIAVFDVLRAI----NAYVTDMAPWKLVKTD---PERLRTVLY 469 (542)
T ss_dssp ---HHHHHHHHHHTTC-----------------HHHHHHHHHHHHHHH----HHHHHHHCHHHHHHHC---HHHHHHHHH
T ss_pred ---hHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH----HHHHHhcCchhhhcCC---HHHHHHHHH
Confidence 3333333333332 333344444443210 1122344557666653 467888999
Q ss_pred HHHHHHHhh---hhhcCchhHHHHHHHhccCC
Q 017730 311 CLYKATKSS---LRGIAPKEIKLLKYLLNIID 339 (367)
Q Consensus 311 hLY~tak~~---l~r~~PKEiRILKyLLsIeD 339 (367)
.++...+.- |.=.+|-=-.=|-..|++..
T Consensus 470 ~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~ 501 (542)
T 3u1f_A 470 ITLEGVRVTTLLLSPILPRKSVVIFDMLGVPE 501 (542)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCC
Confidence 888776653 44556655555566677754
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.14 E-value=64 Score=35.19 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=8.3
Q ss_pred cchhhhcchhhhhhhh
Q 017730 120 QWRKYLVFREDWNKYR 135 (367)
Q Consensus 120 dWrkLLaFs~EW~~iR 135 (367)
-||++++ ++.|.++|
T Consensus 801 ~~Rg~l~-R~~~~k~~ 815 (1184)
T 1i84_S 801 QCRGYLA-RKAFAKRQ 815 (1184)
T ss_dssp HHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHH
Confidence 3666665 55555543
No 9
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=29.43 E-value=1.7e+02 Score=25.04 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHHH--------HHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhhhh
Q 017730 171 EMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFR--------YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTL 242 (367)
Q Consensus 171 ev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~--------hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD~a~ 242 (367)
.+|+|-+=+.+.++.=.++.+.|.++-=-|+.-|-+ -|+.+.... -+.+|.+..+|+......++--|.|.
T Consensus 22 ~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~L-lp~dqk~A~~lak~l~~~L~~LD~AA 100 (130)
T 3zsu_A 22 RIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNL-LAKDQPTPTALTRALTDDFLKIDQGA 100 (130)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTS-CGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhc-CHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666566666666665555555432 244444444 26777777777777777777777766
Q ss_pred hhHH
Q 017730 243 EHVE 246 (367)
Q Consensus 243 e~~~ 246 (367)
....
T Consensus 101 ~~~n 104 (130)
T 3zsu_A 101 DLDS 104 (130)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 6554
No 10
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=27.74 E-value=83 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCc-chhHHHhhhccCCchhHHHHH
Q 017730 175 HYELLKEIQDSPT-DINAVVARRRKDFTGEFFRYL 208 (367)
Q Consensus 175 hneLL~~i~e~p~-di~aIVA~rRkDFT~EFF~hL 208 (367)
|||||+.-.+.-. -|++.=+.-|.=++.|=|.-+
T Consensus 42 ~~elled~e~~f~~aWdaLPaSAqnlld~eqFHgf 76 (145)
T 2pv4_A 42 CDELLADRDGRFTRAWDQLPDSASSLFERCVFHGF 76 (145)
T ss_dssp HHHHHHTTTCHHHHHHHHSCHHHHTSSCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHhCcHHHHhcccHHHhHHH
Confidence 6777765444422 378888899998888877665
No 11
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=26.49 E-value=2.9e+02 Score=23.32 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHhc
Q 017730 207 YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAK 278 (367)
Q Consensus 207 hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~~ 278 (367)
+|..+.....+++.+..|..+....-.--++|+.....++..+.+...+... .+.+.....+|.+.+..+
T Consensus 64 ~l~~~~~~~~~~~~~~~l~~i~~~~~~Y~~~f~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~~l~~~~~~~ 133 (258)
T 2yfa_A 64 QQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSS--AIRADQAMDALSQEVMAR 133 (258)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 3333334446677787777766665555555555555555555543333221 445555555555544443
No 12
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=25.31 E-value=1.7e+02 Score=25.22 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHH--------HHHHHHhhhcCChhhHH
Q 017730 151 EPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFF--------RYLSLVSETHDSLEDCD 222 (367)
Q Consensus 151 DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF--------~hL~~l~ea~d~~~~rd 222 (367)
.|....++.+.++.+.+.-++|.. -+.+.|+++-=-|+.-|- +-|+.+.... -+.+|.
T Consensus 18 sp~~i~~Iq~y~~~i~~ar~Rl~e-------------~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~L-lp~dqk 83 (133)
T 3ls0_A 18 SPEKIAQLQVYVNPIAVARDGMEK-------------RLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSL-LPKDQD 83 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-------------THHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHS-CHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHH-------------HHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhc-ChhhhH
Confidence 355555555555555555555532 044444443333333322 2255555554 266777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHH
Q 017730 223 AVARLATRCLSAVSAYDKTLEHVE 246 (367)
Q Consensus 223 ~LarL~~~clsav~ayD~a~e~~~ 246 (367)
+..+|+......++--|.|.....
T Consensus 84 ~A~~lak~l~~~L~~LD~AA~~~n 107 (133)
T 3ls0_A 84 KAKTLAKEVFGHLERLDAAAKDRN 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777777777776666665544
No 13
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=21.96 E-value=3.9e+02 Score=23.16 Aligned_cols=120 Identities=11% Similarity=0.171 Sum_probs=67.8
Q ss_pred HHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcch-----hHHHhhhccCCchhHHHHHHHHhhhc
Q 017730 141 RCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDI-----NAVVARRRKDFTGEFFRYLSLVSETH 215 (367)
Q Consensus 141 Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di-----~aIVA~rRkDFT~EFF~hL~~l~ea~ 215 (367)
-....+..-.||..|.+ |.+-+.++...++|=.++|+.+-..|..+ .++|+.- .-+.+..
T Consensus 34 aL~~~~~~a~~p~Lk~~---l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~am~gli~e~------------~~~~~~~ 98 (173)
T 2gyq_A 34 ALPKMIEQATNRDLSQG---LTSHLEETQKQIERLDQVFKKLGQKPSGVNCPAIDGLIKEA------------DETAGEI 98 (173)
T ss_dssp HHHHHHHHCCSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTCCSCSCCCHHHHHHHHHH------------HHHHHTB
T ss_pred HHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHH------------HHHHhcc
Confidence 34455666677999998 77888888899999999999998877553 4555432 2234445
Q ss_pred CChhhHHHHHHHHHHH--HHHHHhhhhhhh--hHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHh
Q 017730 216 DSLEDCDAVARLATRC--LSAVSAYDKTLE--HVETLDSAQAKFDDILNSPSVDVACEKIKSLAKA 277 (367)
Q Consensus 216 d~~~~rd~LarL~~~c--lsav~ayD~a~e--~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~ 277 (367)
.+.+-+|+.---++.- -=-|.+|..... .+--...+...|+.+|.- -.++++++..+|+.
T Consensus 99 ~~~~v~da~li~aaq~~EhyEIA~YgtL~a~A~~lG~~e~~~lL~~~L~E--E~~~d~~L~~la~~ 162 (173)
T 2gyq_A 99 ADKTVLDAAIVANAQAVEHYEIARYGTLIAWAEELGHDDIVRFLTTNLNE--EKAANTKLNTVALR 162 (173)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 5544444322001000 001223333322 232334455555555543 35677777777754
No 14
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.16 E-value=69 Score=29.89 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=9.5
Q ss_pred hhhhhCCcChHHHHH
Q 017730 255 FDDILNSPSVDVACE 269 (367)
Q Consensus 255 f~DILnspSld~ac~ 269 (367)
|.+|+|+| +.||.
T Consensus 183 yYEIln~~--~~Ac~ 195 (248)
T 3uzd_A 183 YYEIQNAP--EQACH 195 (248)
T ss_dssp HHHTSCCH--HHHHH
T ss_pred HHHHcCCH--HHHHH
Confidence 57899976 66664
No 15
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=20.72 E-value=4.1e+02 Score=22.86 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=67.5
Q ss_pred HHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHH-HhcCCcch-----hHHHhhhccCCchhHHHHHHHHhhh
Q 017730 141 RCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKE-IQDSPTDI-----NAVVARRRKDFTGEFFRYLSLVSET 214 (367)
Q Consensus 141 Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~-i~e~p~di-----~aIVA~rRkDFT~EFF~hL~~l~ea 214 (367)
-....+..-.||..|.+ |.+-+.++...++|=..+|+. +-..|..+ .++++.- .-+.+.
T Consensus 27 al~~~~~~a~~p~Lk~~---l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~am~gli~e~------------~~~~~~ 91 (166)
T 2gs4_A 27 ALAKLARATSNEKLSQA---FHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEA------------NEVIES 91 (166)
T ss_dssp HHHHHHHSCSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHHHHH------------HHHHTS
T ss_pred HHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHH------------HHHHhc
Confidence 34455666778999998 777888888888888888888 87776553 4444432 223344
Q ss_pred cCChhhHHHHHHHHHHH--HHHHHhhhhhhh--hHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHh
Q 017730 215 HDSLEDCDAVARLATRC--LSAVSAYDKTLE--HVETLDSAQAKFDDILNSPSVDVACEKIKSLAKA 277 (367)
Q Consensus 215 ~d~~~~rd~LarL~~~c--lsav~ayD~a~e--~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~ 277 (367)
..+.+-+|+.---++.- -=-|.+|..... .+--...+...|+.+|.- -.++++++..+|+.
T Consensus 92 ~~~~~vlda~li~aaq~~EhyEIA~YgtL~a~A~~lG~~~~~~lL~~~L~E--E~~~d~~L~~la~~ 156 (166)
T 2gs4_A 92 TEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEE--EKATDIKLTDLAIN 156 (166)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 44444444321001000 001223333322 233334455556665543 36778888888865
Done!