Query 017730
Match_columns 367
No_of_seqs 39 out of 41
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 04:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0pa_ a.192.1.1 (A:) N-termi 48.1 5.9 0.00043 33.3 3.3 56 155-215 41-96 (176)
2 d3bzka3 a.294.1.1 (A:1-324) Tr 41.0 15 0.0011 32.5 5.0 31 270-308 77-107 (324)
3 d2ffja1 e.50.1.1 (A:7-288) Hyp 35.7 27 0.0019 30.3 5.8 54 287-340 5-64 (282)
4 d1hcia4 a.7.1.1 (A:633-746) al 34.5 11 0.00082 27.2 2.6 57 133-189 5-70 (114)
5 d1xl3c1 a.243.1.1 (C:2-92) Tye 30.3 34 0.0025 26.1 4.9 37 202-254 41-82 (91)
6 d1nzea_ a.24.18.1 (A:) Oxygen- 29.0 49 0.0035 25.1 5.7 50 208-259 52-101 (112)
7 d2pv4a1 a.286.1.1 (A:1-144) Un 28.0 1.3E+02 0.0092 24.5 8.4 111 166-310 27-143 (144)
8 d1af7a1 a.58.1.1 (A:11-91) Che 27.6 22 0.0016 24.8 3.1 62 128-194 14-77 (81)
9 d1mmsa1 a.4.7.1 (A:71-140) Rib 26.5 27 0.002 25.2 3.5 28 247-275 35-62 (70)
10 d1h3ob_ a.22.1.3 (B:) TAF(II)- 25.0 20 0.0014 26.3 2.5 54 258-314 3-68 (74)
11 d1hc8a_ a.4.7.1 (A:) Ribosomal 22.5 47 0.0034 24.1 4.2 29 247-276 39-67 (74)
12 d1ku9a_ a.4.5.36 (A:) DNA-bind 21.0 49 0.0036 24.3 4.2 83 98-180 56-148 (151)
No 1
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=48.06 E-value=5.9 Score=33.26 Aligned_cols=56 Identities=29% Similarity=0.466 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhHHHHHHHHhhhc
Q 017730 155 KEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH 215 (367)
Q Consensus 155 K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di~aIVA~rRkDFT~EFF~hL~~l~ea~ 215 (367)
...++.++-+-|+=|+ +...+||.-+.+.=..|.++=.++| +..||.||..++|+.
T Consensus 41 qr~~L~~a~~~kKP~~--~~~~~ll~pl~~~i~~i~~~re~nR---~s~~fNHLsavsEgi 96 (176)
T d1s0pa_ 41 EKALINTASQSKKPSQ--ETLLELIKPLNNFAAEVGKIRDSNR---SSKFFNNLSAISESI 96 (176)
T ss_dssp HHHHHHHHHHEECCCH--HHHHHHTHHHHHHHHHHHHHHHTCT---TCTTHHHHHHHHTSG
T ss_pred HHHHHHHHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHHHhcC---CCchhHHHHHHHHhc
Confidence 3456677777777763 4455666666655555556655666 457999999999985
No 2
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=40.96 E-value=15 Score=32.46 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=23.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhhccchhhhHHHH
Q 017730 270 KIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDI 308 (367)
Q Consensus 270 KId~LA~~~eLDsaLvLlisKAwaaAKES~~~kdEvKDI 308 (367)
=|+.+.+.|+|++.|.--|.+| .+.+|+.||
T Consensus 77 il~~i~~~~~Lt~~L~~~i~~a--------~t~~eLEdl 107 (324)
T d3bzka3 77 ILASIEEQGKLTPELARDIKLA--------DTKTRLEDL 107 (324)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHC--------CSHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHcC--------CCHHHHHHH
Confidence 3567788999999987766654 346788887
No 3
>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.73 E-value=27 Score=30.34 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhhh-cCchhH-----HHHHHHhccCCh
Q 017730 287 LINGAWASAKASQTMKNEVKDIMYCLYKATKSSLRG-IAPKEI-----KLLKYLLNIIDP 340 (367)
Q Consensus 287 lisKAwaaAKES~~~kdEvKDIM~hLY~tak~~l~r-~~PKEi-----RILKyLLsIeDP 340 (367)
+++++...++-.+.-.+..+.+|.+........+.. ..|+++ |+++-++..+||
T Consensus 5 ~~~q~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~i~~~i~~~~g~~DP 64 (282)
T d2ffja1 5 LLGRVYYEAKLVTDDEDLISQCVDESLKILAENYSSRPINAHLATRIHRRVYEILGVEDP 64 (282)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTCSCT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHhCCCCc
Confidence 568888899999988899999999999888776655 456643 778888999999
No 4
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.51 E-value=11 Score=27.25 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=39.5
Q ss_pred hhhHhHHHHHHhh---------hhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcch
Q 017730 133 KYRESFYNRCRTR---------ADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDI 189 (367)
Q Consensus 133 ~iRp~Ff~Rcq~R---------Ad~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~di 189 (367)
.+|..|+..|.+. .-+..++..-..+-.+.++.+.+..+|..|..-+..|.+.+..|
T Consensus 5 ~L~~~F~~~a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L 70 (114)
T d1hcia4 5 RLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLI 70 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777776553 11223333344567788999999999999999999988776664
No 5
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=30.31 E-value=34 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=24.7
Q ss_pred hhHHHHHHHHh-----hhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHh
Q 017730 202 GEFFRYLSLVS-----ETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAK 254 (367)
Q Consensus 202 ~EFF~hL~~l~-----ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~k 254 (367)
.-||+-|+.++ +.|++++.|. +.|.+| |++||.|-.+
T Consensus 41 I~F~~El~~l~R~iP~~~f~d~e~R~-------~lL~a~---------Q~ALD~aI~~ 82 (91)
T d1xl3c1 41 VRFYQDLKRMFRLFPLGVFSDEEQRQ-------NLLQMC---------QNAIDMAIES 82 (91)
T ss_dssp HHHHHHHHHHHHTSCGGGSSCHHHHH-------HHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHhcCCHHHHH-------HHHHHH---------HHHHHHHHHh
Confidence 34666666555 4578889887 456677 6777777655
No 6
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=29.04 E-value=49 Score=25.15 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhh
Q 017730 208 LSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDIL 259 (367)
Q Consensus 208 L~~l~ea~d~~~~rd~LarL~~~clsav~ayD~a~e~~~~Ld~A~~kf~DIL 259 (367)
|+.++.+ -.+++|..+.+|++.....++.-|.+..... ...|+..|.+.+
T Consensus 52 l~~li~~-~~~~~k~~~~~la~~lf~~le~LD~Aar~kd-~~~a~~~Y~~t~ 101 (112)
T d1nzea_ 52 LKTVISA-KPKDEKKSLQELTSKLFSSIDNLDHAAKIKS-PTEAEKYYGQTV 101 (112)
T ss_dssp HHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHh-CCHhhhHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 3444444 4677788889999999999999999887766 556666655543
No 7
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=28.02 E-value=1.3e+02 Score=24.50 Aligned_cols=111 Identities=12% Similarity=0.191 Sum_probs=69.5
Q ss_pred hhhcHHH-HHHHHHHHHHhcCCcc-----hhHHHhhhccCCchhHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHhhh
Q 017730 166 KKIDDEM-ESHYELLKEIQDSPTD-----INAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYD 239 (367)
Q Consensus 166 K~iDeev-~~hneLL~~i~e~p~d-----i~aIVA~rRkDFT~EFF~hL~~l~ea~d~~~~rd~LarL~~~clsav~ayD 239 (367)
-+|-|+| +.|..|+.+|-+.... |++.=+.-+.=++.+=|.-+..+.+++.+..--.+++.++ .-|
T Consensus 27 d~vPe~l~eay~nm~~el~e~~e~~~~eaW~sLPaSAqnll~~eqFH~~~~anq~~~~~~v~qe~~~~a--------~~~ 98 (144)
T d2pv4a1 27 DRLPESLLTAYRSLCDELLADRDGRFTRAWDQLPDSASSLFERCVFHGFYLANAWIQLSIVARDISELQ--------DTD 98 (144)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHSCHHHHTSSCHHHHHHHHHHHHHHHHHHHCCCHHHHH--------HTT
T ss_pred hhCcHHHHHHHHHHHHHHHHhhHHHHHHHHHhCcHHHHhhchHHHHHHHHHHHHHHHHHHHHHhccccc--------cCc
Confidence 4555666 5577777777755433 7888899999999999999988888875544333333321 111
Q ss_pred hhhhhHHhHHHHHHhhhhhhCCcChHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhccchhhhHHHHHH
Q 017730 240 KTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLINGAWASAKASQTMKNEVKDIMY 310 (367)
Q Consensus 240 ~a~e~~~~Ld~A~~kf~DILnspSld~ac~KId~LA~~~eLDsaLvLlisKAwaaAKES~~~kdEvKDIM~ 310 (367)
...... .=..-|..++.. |+.++++||+ .|+--..|+++.|+||.
T Consensus 99 ee~~e~----e~~~~~~rl~~~-~lKd~~KqLK---------------------KAR~D~~m~~sfk~V~~ 143 (144)
T d2pv4a1 99 EAIAEQ----EYSGLYVRVAEA-ALKESVKKLK---------------------KARTDRSMYNSMREVMG 143 (144)
T ss_dssp TTSCHH----HHHHHHHHHHHT-HHHHHHHHHH---------------------HHTTCHHHHHHHHHHHT
T ss_pred HHHHHH----HHHHHHHHHHHH-HHHHHHHHHH---------------------HHccCHHHHHHHHHHHc
Confidence 111111 111223333333 4788888876 36777788999999984
No 8
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=27.56 E-value=22 Score=24.83 Aligned_cols=62 Identities=11% Similarity=0.281 Sum_probs=39.9
Q ss_pred hhhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCc--chhHHHh
Q 017730 128 REDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPT--DINAVVA 194 (367)
Q Consensus 128 s~EW~~iRp~Ff~Rcq~RAd~E~DP~~K~kL~~L~RkLK~iDeev~~hneLL~~i~e~p~--di~aIVA 194 (367)
.+++..++.-++++|--.-+..-..-.+.+|.+..+.+. + +.++.|.++| +.+|. .++.+|.
T Consensus 14 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~~RL~~rm~~~g-~-~s~~~Y~~~L---~~~~~~~e~~~li~ 77 (81)
T d1af7a1 14 DAHFRRICQLIYQRAGIVLADHKRDMVYNRLVRRLRALG-L-DDFGRYLSML---EANQNSAEWQAFIN 77 (81)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHT-C-CCHHHHHHHH---HHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHhC-C-CCHHHHHHHH---HhCCCHHHHHHHHH
Confidence 467889999999998888777777777777666666664 1 2344444444 44443 3555553
No 9
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.48 E-value=27 Score=25.19 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.6
Q ss_pred hHHHHHHhhhhhhCCcChHHHHHHHHHHH
Q 017730 247 TLDSAQAKFDDILNSPSVDVACEKIKSLA 275 (367)
Q Consensus 247 ~Ld~A~~kf~DILnspSld~ac~KId~LA 275 (367)
..+-|+.|.+| ||.-++++||+-|-.=|
T Consensus 35 v~eIAk~K~~d-l~~~~l~~a~k~v~GtA 62 (70)
T d1mmsa1 35 IEEIAKTKMPD-LNANSLEAAMKIIEGTA 62 (70)
T ss_dssp HHHHHHHHGGG-CCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cCCCCHHHHHHHHHHhH
Confidence 45678999999 78888999999886544
No 10
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.98 E-value=20 Score=26.35 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=34.4
Q ss_pred hhCCcChHHHHHHHHHHHHhccCChHH---HH---------HHHHHHHhhhhccchhhhHHHHHHHHHH
Q 017730 258 ILNSPSVDVACEKIKSLAKAKELDSSL---IL---------LINGAWASAKASQTMKNEVKDIMYCLYK 314 (367)
Q Consensus 258 ILnspSld~ac~KId~LA~~~eLDsaL---vL---------lisKAwaaAKES~~~kdEvKDIM~hLY~ 314 (367)
||+-..+++..++|| ...+|||.- +| ..+.|-..||.-..-+=|+|||.+||=+
T Consensus 3 il~K~~L~eLv~~id---p~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~LeR 68 (74)
T d1h3ob_ 3 VLTKKKLQDLVREVD---PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 68 (74)
T ss_dssp SSCHHHHHHHHHHHC---SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Confidence 444455555555554 345566542 22 3456778888777666699999999854
No 11
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.50 E-value=47 Score=24.12 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=23.6
Q ss_pred hHHHHHHhhhhhhCCcChHHHHHHHHHHHH
Q 017730 247 TLDSAQAKFDDILNSPSVDVACEKIKSLAK 276 (367)
Q Consensus 247 ~Ld~A~~kf~DILnspSld~ac~KId~LA~ 276 (367)
..+-|+.|..| ||..+++.||+-|-.=|.
T Consensus 39 i~eIAk~K~~D-l~~~~l~~a~k~v~GtAr 67 (74)
T d1hc8a_ 39 VREIAELKMPD-LNAASIEAAMRMIEGTAR 67 (74)
T ss_dssp HHHHHHHSGGG-CCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-cCCCCHHHHHHHHHhhHh
Confidence 35679999999 788899999998865443
No 12
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.99 E-value=49 Score=24.27 Aligned_cols=83 Identities=10% Similarity=0.070 Sum_probs=45.4
Q ss_pred CchHHhhHHHHHhHhcC-CCCcccchhhhc-ch--hhhhhhhHhH---HHHHH---hhhhhccChHHHHHHHHHHHHhhh
Q 017730 98 YTLTQFCDKIIDVFLNE-KPRVKQWRKYLV-FR--EDWNKYRESF---YNRCR---TRADEESEPTMKEKLISLARKVKK 167 (367)
Q Consensus 98 ~tm~~vCDKLIdVFl~~-Kp~~~dWrkLLa-Fs--~EW~~iRp~F---f~Rcq---~RAd~E~DP~~K~kL~~L~RkLK~ 167 (367)
.++.+++++|.+.=++. .+.+.|=|.+.. .. ++|..+...+ +++.. ..+....++..+..+....+++.+
T Consensus 56 ~~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~t~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 135 (151)
T d1ku9a_ 56 GNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEKEFIKQKIKGIER 135 (151)
T ss_dssp HHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHTH
T ss_pred chHHHHHHHHHHCCCEEEEEcCCCCceeEEeCCHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 47789999999987775 344566554333 22 3343333222 22222 122233334446666667777776
Q ss_pred hcHHHHHHHHHHH
Q 017730 168 IDDEMESHYELLK 180 (367)
Q Consensus 168 iDeev~~hneLL~ 180 (367)
+.+.+++..+.|.
T Consensus 136 ~~~~~e~~~~~l~ 148 (151)
T d1ku9a_ 136 MKKISEKILEALN 148 (151)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
Done!