BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017731
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 102/242 (42%), Gaps = 24/242 (9%)
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIAC 142
AG FDNRG+G + +TT+ M D AL++ L A V G SMGA IA
Sbjct: 69 AAGYRCITFDNRGIGATE---NAEGFTTQTMVADTAALIETLDIAPARVVGVSMGAFIAQ 125
Query: 143 KLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFF-RAKTPEKRAAVDLDTHYS 201
+L + PE V S L+ G +LD A +FF +A+ + V L Y
Sbjct: 126 ELMVVAPELVSSAVLMATRG-------RLDR-----ARQFFNKAEAELYDSGVQLPPTYD 173
Query: 202 --QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRS 259
LE + + + +++ S ++S G Q+ T + + R+
Sbjct: 174 ARARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCA---PQTNR-LPAYRN 229
Query: 260 AGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLP-GGHLVSHERTEEVNQALIDLI 318
V VI DV+ R +A+ L P R + +P GHL ER E VN A++
Sbjct: 230 IAAPVLVIGFADDVVTPPYLGREVADAL-PNGRYLQIPDAGHLGFFERPEAVNTAMLKFF 288
Query: 319 KA 320
+
Sbjct: 289 AS 290
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 25 IKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGA 84
+++ + G GP V L G + +W Q+ LA A
Sbjct: 29 VRLHFVELGSGPA-VCLCHGFPESWYSWRYQIPALAQ----------------------A 65
Query: 85 GIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
G V A D +G G SS P + EY +++ K+++ +D LG QA GH G M+ +
Sbjct: 66 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYM 125
Query: 145 AAMVPERVLSLALLN 159
A PERV ++A LN
Sbjct: 126 ALFYPERVRAVASLN 140
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 25 IKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGA 84
+++ + G GP V L G + +W Q+ LA A
Sbjct: 44 VRLHFVELGSGPA-VCLCHGFPESWYSWRYQIPALAQ----------------------A 80
Query: 85 GIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
G V A D +G G SS P + EY +++ K+++ +D LG QA GH G M+ +
Sbjct: 81 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYM 140
Query: 145 AAMVPERVLSLALLN 159
A PERV ++A LN
Sbjct: 141 ALFYPERVRAVASLN 155
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 25 IKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGA 84
+++ + G GP V L G + +W Q+ LA A
Sbjct: 248 VRLHFVELGSGPA-VCLCHGFPESWYSWRYQIPALAQ----------------------A 284
Query: 85 GIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
G V A D +G G SS P + EY +++ K+++ +D LG QA GH G M+ +
Sbjct: 285 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYM 344
Query: 145 AAMVPERVLSLALLN 159
A PERV ++A LN
Sbjct: 345 ALFYPERVRAVASLN 359
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 24 GIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGG 83
GI++ + G GP + L G + +W Q+ LA
Sbjct: 245 GIRLHFVEMGSGPA-LCLCHGFPESWFSWRYQIPALAQ---------------------- 281
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V A D +G G SS P + EY +++ K+++ +D LG QA GH ++
Sbjct: 282 AGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWN 341
Query: 144 LAAMVPERVLSLALLN 159
+A PERV ++A LN
Sbjct: 342 MALFYPERVRAVASLN 357
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 88 VCAFDNRGMGRSSVPVK---KTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
V A D RG G SS P Y+ ++MA+D + +M LG++Q +V GH GA +A +L
Sbjct: 54 VVATDLRGYGDSSRPASVPHHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRL 113
Query: 145 AAMVPERVLSLALLNV 160
A P RV LALL++
Sbjct: 114 ALDHPHRVKKLALLDI 129
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIAC 142
GAG V A D RG GRSS + Y K + DV+ ++D G +QA V GH GA +A
Sbjct: 58 GAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAW 117
Query: 143 KLAAMVPERVLSLALLNVTGGG 164
A + P+R + ++V G
Sbjct: 118 TFAWLHPDRCAGVVGISVPFAG 139
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIAC 142
GAG V A D RG GRSS + Y K + DV+ ++D G +QA V GH GA +A
Sbjct: 52 GAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAW 111
Query: 143 KLAAMVPERVLSLALLNVTGGG 164
A + P+R + ++V G
Sbjct: 112 TFAWLHPDRCAGVVGISVPFAG 133
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 88 VCAFDNRGMGRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
VCA D RG G SS PV Y+ + MA D LM LG+++ H+ GH+ G ++
Sbjct: 55 VCA-DLRGYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRM 113
Query: 145 AAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFF----RAKTPEKRAAVDLDTHY 200
A P+ VLSLA+L++ + ++D ++ A PEK D DT Y
Sbjct: 114 ALDHPDSVLSLAVLDII-PTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFY 172
Query: 201 S---------------QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACW 245
E LEEY +++ + G +Y G I
Sbjct: 173 EGCLFGWGATGADGFDPEQLEEY----------RKQWRDPAAIHGSCCDYRAGGTIDFEL 222
Query: 246 MHKMTQKDIQTIR-----SAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGH 300
H + +Q SAG + S+ Q+ +A RLA R LPGGH
Sbjct: 223 DHGDLGRQVQCPALVFSGSAGLMHSLFE------MQVVWAPRLANM-----RFASLPGGH 271
Query: 301 LVSHERTEEVNQALIDLIKASEKKI 325
++ + L + + + I
Sbjct: 272 FFVDRFPDDTARILREFLSDARSGI 296
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 102/265 (38%), Gaps = 50/265 (18%)
Query: 88 VCAFDNRGMGRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
VCA D RG G SS PV Y+ + MA D LM LG+++ H+ GH G ++
Sbjct: 55 VCA-DLRGYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRM 113
Query: 145 AAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFF----RAKTPEKRAAVDLDTHY 200
A P+ VLSLA+L++ + ++D ++ A PEK D DT Y
Sbjct: 114 ALDHPDSVLSLAVLDII-PTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFY 172
Query: 201 S---------------QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACW 245
E LEEY +++ + G +Y G I
Sbjct: 173 EGCLFGWGATGADGFDPEQLEEY----------RKQWRDPAAIHGSCCDYRAGGTIDFEL 222
Query: 246 MHKMTQKDIQTIR-----SAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGH 300
H + +Q SAG + S+ Q+ +A RLA R LPGGH
Sbjct: 223 DHGDLGRQVQCPALVFSGSAGLMHSLFE------MQVVWAPRLANM-----RFASLPGGH 271
Query: 301 LVSHERTEEVNQALIDLIKASEKKI 325
++ + L + + + I
Sbjct: 272 FFVDRFPDDTARILREFLSDARSGI 296
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 22/235 (9%)
Query: 86 IEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLA 145
V +D RG G SSVP YT + +DV+ L+D L ++AH G S+G ++ LA
Sbjct: 54 FRVLRYDARGHGASSVP--PGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLA 111
Query: 146 AMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYL 205
P+R+ L L N T + D + ++ +A+ + AA L + L
Sbjct: 112 LHAPQRIERLVLAN-TSAWLGPAAQWDERIAAV----LQAEDXSETAAGFLGNWFPPALL 166
Query: 206 EEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVS 265
E R + + + + AT + +G G A + + + R
Sbjct: 167 E-------RAEPVVERFRAXLXAT---NRHGLAGSFAAVRDTDLRAQLARIERP----TL 212
Query: 266 VIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIKA 320
VI G +D + + +A + AR++ LP HL + E + A++ + A
Sbjct: 213 VIAGAYDTVTAASHGELIAASIAG-ARLVTLPAVHLSNVEFPQAFEGAVLSFLGA 266
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 117/308 (37%), Gaps = 49/308 (15%)
Query: 23 NGIKIFYRTYGRGPTKVI-LITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGD 81
+G++IFY+ +G KVI G + D W QL L +K
Sbjct: 12 DGVEIFYKDWGPRDAKVIHFHHGWPLSSDDWDAQL--LFFVNK----------------- 52
Query: 82 GGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIA 141
G V A D RG GRSS + A D A+++ LG A GHS G
Sbjct: 53 ---GFRVVAHDRRGHGRSSQVWDG--HDMDHYADDAAAVVEKLGTHGAMHVGHSTGGGEV 107
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLS-------IAIRFFRAKTPEKRAAV 194
+ A ER +S A+L P L ++T S F+A RA
Sbjct: 108 VRYIARHGERNVSKAVL------ISSVPPLMVKTSSNPNGTPKSVFDDFQAHVAANRAQF 161
Query: 195 DLDTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDI 254
LD Y G+ ++Y + +G+ + + +DG + +Q D
Sbjct: 162 YLDVPAGPFYGYNRPGAKPSEGVIYNWWRQGMMGS---TKAQYDGIV------AFSQTDF 212
Query: 255 QT-IRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGG-HLVSHERTEEVNQ 312
++ V VIHG D + + L+ KL ++I G H + ++VN
Sbjct: 213 TNDLKGITIPVLVIHGDDDQVVPYADSGVLSAKLVKNGKLITYKGAPHGIPTTHADKVNA 272
Query: 313 ALIDLIKA 320
L++ +++
Sbjct: 273 DLLEFLQS 280
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 33/252 (13%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V A D G +SS P +Y+ + +A + AL++ LG +A V GHS G +A +
Sbjct: 72 AGYRVIAVDQVGFCKSSKPAH-YQYSFQQLAANTHALLERLGVARASVIGHSXGGXLATR 130
Query: 144 LAAMVPERVLSLALLNVTG-----------GGFQCCPKLDLQTLSIAIRFFRAKTPEKRA 192
A + P +V L L+N G + DLQT + IR ++
Sbjct: 131 YALLYPRQVERLVLVNPIGLEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQA------ 184
Query: 193 AVDLDTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQK 252
T+Y+ E+ E+ +A Y+ KG + S +D ++++ +
Sbjct: 185 -----TYYAGEWRPEFDRWVQXQAGXYRG--KGRESVAWNSALTYDXIFTQPVVYELDRL 237
Query: 253 DIQTIRSAGFLVSVIHGRHDVIAQI-----CYAR--RLAEKLYPVARMIDLPG-GHLVSH 304
T+ G + G+ A++ YA+ + A + P A +++ P GH
Sbjct: 238 QXPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQI 297
Query: 305 ERTEEVNQALID 316
+ E +QAL++
Sbjct: 298 QAPERFHQALLE 309
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 121/315 (38%), Gaps = 63/315 (20%)
Query: 13 SAAPDAALNDNGIKIFYRT----YGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDD 68
S P AA+N G ++ YR +G P ++L L W PQ+ L+
Sbjct: 2 SHXPYAAVN--GTELHYRIDGERHGNAPW-IVLSNSLGTDLSXWAPQVAALSKH------ 52
Query: 69 DETILQDSVESGDGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQ 128
V +D RG G S P K YT + + DV+ L D L +
Sbjct: 53 -----------------FRVLRYDTRGHGHSEAP--KGPYTIEQLTGDVLGLXDTLKIAR 93
Query: 129 AHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTP 188
A+ G S G + LAA +R+ +AL N P++ + R +A+T
Sbjct: 94 ANFCGLSXGGLTGVALAARHADRIERVALCNT--AARIGSPEVWVP------RAVKARTE 145
Query: 189 EKRAAVD--LDTHYSQEYLE-EYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACW 245
A D L ++ +Y E E V + R + D + +A
Sbjct: 146 GXHALADAVLPRWFTADYXEREPVVLAXIRDVFVHT----------------DKEGYASN 189
Query: 246 MHKMTQKDIQTIRSAGFLVS--VIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVS 303
+ D++ + G V VI G HD+ A R LA+ + AR ++L H+ +
Sbjct: 190 CEAIDAADLRP-EAPGIKVPALVISGTHDLAATPAQGRELAQAIAG-ARYVELDASHISN 247
Query: 304 HERTEEVNQALIDLI 318
ER + + ++D +
Sbjct: 248 IERADAFTKTVVDFL 262
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 41/301 (13%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
+G +I+++ +G G V+ G D W Q++ L+
Sbjct: 7 DGTQIYFKDWGSG-KPVLFSHGWPLDADMWEYQMEYLSSR-------------------- 45
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM-GAMIA 141
G AFD RG GRS P +Y T A D+ L++HL K+ + G SM G +A
Sbjct: 46 --GYRTIAFDRRGFGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVA 101
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYS 201
+A RV L LL F P Q + + + F R KT + + ++
Sbjct: 102 RYIARHGSARVAGLVLLGAVTPLFGQKPDYP-QGVPLDV-FARFKTELLKDRAQFISDFN 159
Query: 202 QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAG 261
+ G + + Q + A+ + + M + D+ T+
Sbjct: 160 APFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL---- 215
Query: 262 FLVSVIHGRHDVIAQICYARRLAEKLYPVARM---IDLPGGHLVSHERTEEVNQALIDLI 318
VIHG D I ++A +L A + D P G V+H +++N+ L+ +
Sbjct: 216 ----VIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTH--AQQLNEDLLAFL 269
Query: 319 K 319
K
Sbjct: 270 K 270
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 41/301 (13%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
+G +I+++ +G G V+ G D W Q++ L+
Sbjct: 7 DGTQIYFKDWGSG-KPVLFSHGWPLDADMWEYQMEYLSSR-------------------- 45
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IA 141
G AFD RG GRS P +Y T A D+ L++HL K+ + G SMG +A
Sbjct: 46 --GYRTIAFDRRGFGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVA 101
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYS 201
+A RV L LL F P Q + + + F R KT + + ++
Sbjct: 102 RYIARHGSARVAGLVLLGAVTPIFGQKPDYP-QGVPLDV-FARFKTELLKDRAQFISDFN 159
Query: 202 QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAG 261
+ G + + Q + A+ + + M + D+ T+
Sbjct: 160 APFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL---- 215
Query: 262 FLVSVIHGRHDVIAQICYARRLAEKLYPVARM---IDLPGGHLVSHERTEEVNQALIDLI 318
VIHG D I ++A +L A + D P G V+H +++N+ L+ +
Sbjct: 216 ----VIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTH--AQQLNEDLLAFL 269
Query: 319 K 319
K
Sbjct: 270 K 270
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 41/301 (13%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
+G +I+++ +G G V+ G D W Q++ L+
Sbjct: 7 DGTQIYFKDWGSG-KPVLFSHGWLLDADMWEYQMEYLSSR-------------------- 45
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM-GAMIA 141
G AFD RG GRS P +Y T A D+ L++HL K+ + G SM G +A
Sbjct: 46 --GYRTIAFDRRGFGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVA 101
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYS 201
+A RV L LL F P Q + + + F R KT + + ++
Sbjct: 102 RYIARHGSARVAGLVLLGAVTPLFGQKPDYP-QGVPLDV-FARFKTELLKDRAQFISDFN 159
Query: 202 QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAG 261
+ G + + Q + A+ + + M + D+ T+
Sbjct: 160 APFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL---- 215
Query: 262 FLVSVIHGRHDVIAQICYARRLAEKLYPVARM---IDLPGGHLVSHERTEEVNQALIDLI 318
VIHG D I ++A +L A + D P G V+H +++N+ L+ +
Sbjct: 216 ----VIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTH--AQQLNEDLLAFL 269
Query: 319 K 319
K
Sbjct: 270 K 270
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 41/301 (13%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
+G +I+++ +G G V+ G D W Q++ L+
Sbjct: 7 DGTQIYFKDWGSG-KPVLFSHGWLLDADMWEYQMEYLSSR-------------------- 45
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IA 141
G AFD RG GRS P +Y T A D+ L++HL K+ + G SMG +A
Sbjct: 46 --GYRTIAFDRRGFGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVA 101
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYS 201
+A RV L LL F P Q + + + F R KT + + ++
Sbjct: 102 RYIARHGSARVAGLVLLGAVTPLFGQKPDYP-QGVPLDV-FARFKTELLKDRAQFISDFN 159
Query: 202 QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAG 261
+ G + + Q + A+ + + M + D+ T+
Sbjct: 160 APFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL---- 215
Query: 262 FLVSVIHGRHDVIAQICYARRLAEKLYPVARM---IDLPGGHLVSHERTEEVNQALIDLI 318
VIHG D I ++A +L A + D P G V+H +++N+ L+ +
Sbjct: 216 ----VIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTH--AQQLNEDLLAFL 269
Query: 319 K 319
K
Sbjct: 270 K 270
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 41/301 (13%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
+G +I+++ +G G V+ G D W Q++ L+
Sbjct: 7 DGTQIYFKDWGSG-KPVLFSHGWILDADMWEYQMEYLSSR-------------------- 45
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IA 141
G AFD RG GRS P +Y T A D+ L++HL K+ + G SMG +A
Sbjct: 46 --GYRTIAFDRRGFGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVA 101
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYS 201
+A RV L LL F P Q + + + F R KT + + ++
Sbjct: 102 RYIARHGSARVAGLVLLGAVTPLFGQKPDYP-QGVPLDV-FARFKTELLKDRAQFISDFN 159
Query: 202 QEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAG 261
+ G + + Q + A+ + + M + D+ T+
Sbjct: 160 APFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL---- 215
Query: 262 FLVSVIHGRHDVIAQICYARRLAEKLYPVARM---IDLPGGHLVSHERTEEVNQALIDLI 318
VIHG D I ++A +L A + D P G V+H +++N+ L+ +
Sbjct: 216 ----VIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTH--AQQLNEDLLAFL 269
Query: 319 K 319
K
Sbjct: 270 K 270
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 101/263 (38%), Gaps = 40/263 (15%)
Query: 85 GIEVCAFDNRGMGRSSV-PVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
G+ V +D+R GRS+ Y +A D +A++D G +AHV G SMGA I
Sbjct: 51 GLHVIRYDHRDTGRSTTRDFAAHPYGFGELAADAVAVLDGWGVDRAHVVGLSMGATITQV 110
Query: 144 LAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE 203
+A +R+ SL +L GGG LD+ + R R + +D Q
Sbjct: 111 IALDHHDRLSSLTML--LGGG------LDIDFDANIERVMRGEP-----TLDGLPGPQQP 157
Query: 204 YLEEYVGSSTRRAILYQEYVKGISATGMQSNYG--FDGQIHACWMHKMTQ---------- 251
+L+ + E K +S + S G FD +A W +
Sbjct: 158 FLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPY 217
Query: 252 ----------KDIQTIRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHL 301
+R VI HD IA + + LA L P AR+ ++PG
Sbjct: 218 AHYSLTLPPPSRAAELREVTVPTLVIQAEHDPIAPAPHGKHLA-GLIPTARLAEIPG--- 273
Query: 302 VSHERTEEVNQALIDLIKASEKK 324
+ H V+ L ++I A +
Sbjct: 274 MGHALPSSVHGPLAEVILAHTRS 296
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 27/144 (18%)
Query: 20 LNDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVES 79
+N + +IF R G GP ++L+ G TH W LA K
Sbjct: 18 INTSSGRIFARVGGDGPP-LLLLHGFPQTHVMWHRVAPKLAERFK--------------- 61
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM 136
V D G G S +P + T YT + MAK +I M+ LG + GH+
Sbjct: 62 --------VIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNR 113
Query: 137 GAMIACKLAAMVPERVLSLALLNV 160
GA ++ +LA P R+ LA+L++
Sbjct: 114 GARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 27/144 (18%)
Query: 20 LNDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVES 79
+N + +IF R G GP ++L+ G TH W LA
Sbjct: 18 INTSSGRIFARVGGDGPP-LLLLHGFPQTHVMWHRVAPKLAER----------------- 59
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM 136
+V D G G S +P + T YT + MAK +I M+ LG + GH
Sbjct: 60 ------FKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDR 113
Query: 137 GAMIACKLAAMVPERVLSLALLNV 160
GA ++ +LA P R+ LA+L++
Sbjct: 114 GARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 27/144 (18%)
Query: 20 LNDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVES 79
+N + +IF R G GP ++L+ G TH W LA
Sbjct: 18 INTSSGRIFARVGGDGPP-LLLLHGFPQTHVMWHRVAPKLAER----------------- 59
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM 136
+V D G G S +P + T YT + MAK +I M+ LG + GH
Sbjct: 60 ------FKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDR 113
Query: 137 GAMIACKLAAMVPERVLSLALLNV 160
GA ++ +LA P R+ LA+L++
Sbjct: 114 GARVSYRLALDSPGRLSKLAVLDI 137
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 27/144 (18%)
Query: 20 LNDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVES 79
+N + +IF R G GP ++L+ G TH W LA K
Sbjct: 18 INTSSGRIFARVGGDGPP-LLLLHGFPQTHVMWHRVAPKLAERFK--------------- 61
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM 136
V D G G S +P + T YT + MAK +I M+ LG + GH
Sbjct: 62 --------VIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHXR 113
Query: 137 GAMIACKLAAMVPERVLSLALLNV 160
GA ++ +LA P R+ LA+L++
Sbjct: 114 GARVSYRLALDSPGRLSKLAVLDI 137
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 17/234 (7%)
Query: 88 VCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAM 147
V A D G G + P + Y+ +I +MD L ++AH+ G+S G +A A
Sbjct: 57 VIAPDMVGFGFTDRP-ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALR 115
Query: 148 VPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEE 207
ERV + L+ G F L+ A+ + R +D+
Sbjct: 116 YSERVDRMVLMGAVGTRFDVTEGLN------AVWGYTPSIENMRNLLDIFA--------- 160
Query: 208 YVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVI 267
Y S + Y I +S + W+ + D + I++ +I
Sbjct: 161 YDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSD-EDIKTLPNETLII 219
Query: 268 HGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIKAS 321
HGR D + + + RL E + + GH E+T+ N+ +++ +
Sbjct: 220 HGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFFNEA 273
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 88 VCAFDNRGMGRSSVPVKKTEYTTKIMA------KDVIALMDHLGWKQAHVFGHSMGAMIA 141
V A D G G+S P Y IM+ + ++ LM+H G +++H+ G+SMG +
Sbjct: 61 VVAPDLIGFGQSEYP---ETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVT 117
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCP 169
+L PER +AL+ G P
Sbjct: 118 LQLVVEAPERFDKVALMGSVGAPMNARP 145
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
A + FD RG GRS+ + TT + D+ L HLG + VFG S G+ +A
Sbjct: 59 AKYRIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALA 118
Query: 144 LAAMVPERVLSLALLNV 160
A P++V L L +
Sbjct: 119 YAQTHPQQVTELVLRGI 135
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 15/237 (6%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V D+ G +S V E + A+ V LMD L +AH+ G+SMG A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMD-EQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALN 120
Query: 144 LAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE 203
A P+R+ L L+ G G + ++ + + + + + E + Y Q
Sbjct: 121 FALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
Query: 204 YLEEYVGSSTRRAILYQ-EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGF 262
+ E + AI Q E++K + ++ + W +T + + I++ F
Sbjct: 181 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPL-------STW--DVTAR-LGEIKAKTF 230
Query: 263 LVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIK 319
+ GR D + + +L + + GH E +E N+ +ID ++
Sbjct: 231 ---ITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDA-WGPQLKGLAGTDKPNDDDETILQDSVESGD 81
NG+++ Y+ G G V+L+ G+ G+ + +GPQLK L
Sbjct: 10 NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNL---------------------- 47
Query: 82 GGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIM---AKDVIALMDHLGWKQAHVFGHSMGA 138
V A+D RG G S P + ++ AKD + LM L +K+ + G S G
Sbjct: 48 NKKLFTVVAWDPRGYGHSRPPDR--DFPADFFERDAKDAVDLMKALKFKKVSLLGWSNGG 105
Query: 139 MIACKLAAMVPERVLSLAL 157
+ A AA P + + +
Sbjct: 106 ITALIAAAKYPSYIHKMVI 124
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 17/234 (7%)
Query: 88 VCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAM 147
V A D G G + P + Y+ +I +MD L ++AH+ G++ G +A A
Sbjct: 57 VIAPDMVGFGFTDRP-ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALR 115
Query: 148 VPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEE 207
ERV + L+ G F L+ A+ + R +D+
Sbjct: 116 YSERVDRMVLMGAAGTRFDVTEGLN------AVWGYTPSIENMRNLLDIFA--------- 160
Query: 208 YVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVI 267
Y S + Y I +S + W+ + D + I++ +I
Sbjct: 161 YDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSD-EDIKTLPNETLII 219
Query: 268 HGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIKAS 321
HGR D + + + RL E + + GH E+T+ N+ +++ +
Sbjct: 220 HGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRFNRLVVEFFNEA 273
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDA-WGPQLKGLAGTDKPNDDDETILQDSVESGD 81
NG+++ Y+ G G V+L+ G+ G+ + +GPQLK L
Sbjct: 10 NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNL---------------------- 47
Query: 82 GGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIM---AKDVIALMDHLGWKQAHVFGHSMGA 138
V A+D RG G S P + ++ AKD + LM L +K+ + G S G
Sbjct: 48 NKKLFTVVAWDPRGYGHSRPPDR--DFPADFFERDAKDAVDLMKALKFKKVSLLGWSDGG 105
Query: 139 MIACKLAAMVPERVLSLAL 157
+ A AA P + + +
Sbjct: 106 ITALIAAAKYPSYIHKMVI 124
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 15/237 (6%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V D+ G +S V E + A+ V LMD L +AH+ G++MG A
Sbjct: 59 AGYRVILKDSPGFNKSDAVVMD-EQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALN 117
Query: 144 LAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE 203
A P+R+ L L+ G G + ++ + + + + + E + Y Q
Sbjct: 118 FALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 177
Query: 204 YLEEYVGSSTRRAILYQ-EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGF 262
+ E + AI Q E++K + ++ + W +T + + I++ F
Sbjct: 178 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPL-------STW--DVTAR-LGEIKAKTF 227
Query: 263 LVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIK 319
+ GR D + + +L + + GH E +E N+ +ID ++
Sbjct: 228 ---ITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLR 281
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 15/237 (6%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V D+ G +S V E + A+ V LMD L +AH+ G++MG A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMD-EQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALN 120
Query: 144 LAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE 203
A P+R+ L L+ G G + ++ + + + + + E + Y Q
Sbjct: 121 FALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
Query: 204 YLEEYVGSSTRRAILYQ-EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGF 262
+ E + AI Q E++K + ++ + W +T + + I++ F
Sbjct: 181 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPL-------STW--DVTAR-LGEIKAKTF 230
Query: 263 LVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIK 319
+ GR D + + +L + + GH E +E N+ +ID ++
Sbjct: 231 ---ITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLR 284
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDA-WGPQLKGLAGTDKPNDDDETILQDSVESGD 81
NG+++ Y+ G G V+L+ G+ G+ + +GPQLK L
Sbjct: 10 NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNL---------------------- 47
Query: 82 GGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIM---AKDVIALMDHLGWKQAHVFGHSMGA 138
V A+D RG G S P + ++ AKD + LM L +K+ + G + G
Sbjct: 48 NKKLFTVVAWDPRGYGHSRPPDR--DFPADFFERDAKDAVDLMKALKFKKVSLLGWADGG 105
Query: 139 MIACKLAAMVPERVLSLAL 157
+ A AA P + + +
Sbjct: 106 ITALIAAAKYPSYIHKMVI 124
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 112/304 (36%), Gaps = 49/304 (16%)
Query: 21 NDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESG 80
N I+++Y G G V+LI G +W Q + L
Sbjct: 9 NSTPIELYYEDQGSG-QPVVLIHGYPLDGHSWERQTRELLAQ------------------ 49
Query: 81 DGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMG-AM 139
G V +D RG G SS T Y A D+ +++ L + + G SMG
Sbjct: 50 ----GYRVITYDRRGFGGSS--KVNTGYDYDTFAADLHTVLETLDLRDVVLVGFSMGTGE 103
Query: 140 IACKLAAMVPERVLSLALLNVTGGGFQCCPKL---DLQTLSIAIRFF---RAKTPEKRAA 193
+A +A ERV LA L P L D + F A R A
Sbjct: 104 LARYVARYGHERVAKLAFLA------SLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFA 157
Query: 194 VDLDTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKD 253
D + + L+E +GS + + I + + + + W+ + D
Sbjct: 158 WFTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAY-----AVVPAWIEDF-RSD 211
Query: 254 IQTIRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDL---PGGHLVSHERTEEV 310
++ +R+AG ++HG D I I R + P A +++ P G L +H +EV
Sbjct: 212 VEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVPEADYVEVEGAPHGLLWTH--ADEV 269
Query: 311 NQAL 314
N AL
Sbjct: 270 NAAL 273
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 15/237 (6%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V D+ G +S V E + A+ V LMD L +AH+ G+SMG A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMD-EQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALN 120
Query: 144 LAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE 203
A P+R+ L L+ G G + ++ + + + + + E + Y Q
Sbjct: 121 FALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
Query: 204 YLEEYVGSSTRRAILYQ-EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGF 262
+ E + AI Q E++K N+ Q +T + + I++ F
Sbjct: 181 LITEELLQGRWEAIQRQPEHLK---------NFLISAQKAPLSTWDVTAR-LGEIKAKTF 230
Query: 263 LVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIK 319
+ GR D + + +L + + G E +E N+ +ID ++
Sbjct: 231 ---ITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGQWAQWEHADEFNRLVIDFLR 284
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 26/143 (18%)
Query: 25 IKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGA 84
+KI Y G GPT ++L+ G G W + LA
Sbjct: 19 VKIHYVREGAGPT-LLLLHGWPGFWWEWSKVIGPLA-----------------------E 54
Query: 85 GIEVCAFDNRGMGRSSVPVKK--TEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIAC 142
+V D RG G S P ++Y+ A D AL+D LG ++A+V GH A++
Sbjct: 55 HYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLH 114
Query: 143 KLAAMVPERVLSLALLNVTGGGF 165
K +RV+ A+ + F
Sbjct: 115 KFIRKYSDRVIKAAIFDPIQPDF 137
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 73 LQDSVESGDGGAGIEVCAFDNRGMGRS-SVPVKKTEYTTKIMAKDVIALMDHLGWKQAHV 131
LQD +E G V FD RG GRS +P +T + +D + L + LG ++ +
Sbjct: 46 LQDYLE------GFRVVYFDQRGSGRSLELPQDPRLFTVDALVEDTLLLAEALGVERFGL 99
Query: 132 FGHSMGAMIACKLAAMVPE 150
H GA++A ++ P+
Sbjct: 100 LAHGFGAVVALEVLRRFPQ 118
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 25/115 (21%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
+G +I+Y+ +G G ++ G D+W Q+ LA
Sbjct: 7 DGTQIYYKDWGSG-QPIVFSHGWPLNADSWESQMIFLAAQ-------------------- 45
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMG 137
G V A D RG GRSS P + T A D+ L++HL + A +FG S G
Sbjct: 46 --GYRVIAHDRRGHGRSSQPWSGNDMDT--YADDLAQLIEHLDLRDAVLFGFSTG 96
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 91/233 (39%), Gaps = 35/233 (15%)
Query: 87 EVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAA 146
+V FD RG GRS TT + D+ L + G +Q VFG S G+ +A A
Sbjct: 65 KVLLFDQRGCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQ 124
Query: 147 MVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAV----------DL 196
PERV + L + Q +L A RFF PEK V D+
Sbjct: 125 THPERVSEMVLRGIFTLRKQ---RLHWYYQDGASRFF----PEKWERVLSILSDDERKDV 177
Query: 197 DTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQS----NYGFDG--------QIHAC 244
Y Q A L+ + +G + T + S ++G D + H
Sbjct: 178 IAAYRQRLTSADPQVQLEAAKLWSVW-EGETVTLLPSRESASFGEDDFALAFARIENHYF 236
Query: 245 WMHKMTQKDIQTIRSAGFL----VSVIHGRHDVIAQICYARRLAEKLYPVARM 293
+ D Q +R+ + ++HGR+D+ Q+ A LA K +P A +
Sbjct: 237 THLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLA-KAWPEAEL 288
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 26/139 (18%)
Query: 21 NDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESG 80
N I ++Y +G G V+LI G + +W Q L
Sbjct: 10 NSTSIDLYYEDHGTG-VPVVLIHGFPLSGHSWERQSAALLD------------------- 49
Query: 81 DGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGA-M 139
AG V +D RG G+SS P +Y T A D+ +++ L + A + G SMG
Sbjct: 50 ---AGYRVITYDRRGFGQSSQPTTGYDYDT--FAADLNTVLETLDLQDAVLVGFSMGTGE 104
Query: 140 IACKLAAMVPERVLSLALL 158
+A +++ R+ ++A L
Sbjct: 105 VARYVSSYGTARIAAVAFL 123
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 109/310 (35%), Gaps = 55/310 (17%)
Query: 21 NDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESG 80
N I ++Y +G G V+LI G + +W Q L
Sbjct: 9 NSTSIDLYYEDHGAG-QPVVLIHGFPLSGHSWERQSAALLD------------------- 48
Query: 81 DGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGA-M 139
AG V +D RG G+SS P +Y T A D+ +++ L + A + G SMG
Sbjct: 49 ---AGYRVITYDRRGFGQSSQPTTGYDYDT--FAADLNTVLETLDLQDAVLVGFSMGTGE 103
Query: 140 IACKLAAMVPERVLSLA--------LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKR 191
+A +++ R+ +A LL PK + A++
Sbjct: 104 VARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPKEFFDGIVAAVK---------- 153
Query: 192 AAVDLDTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQ 251
D Y+ + + Y + +E V+ T + W +
Sbjct: 154 --ADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDF-R 210
Query: 252 KDIQTIRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDL---PGGHLVSHERTE 308
DI I ++HG D I R+ K P A +++ P G L +H E
Sbjct: 211 ADIPRIDVPAL---ILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTH--AE 265
Query: 309 EVNQALIDLI 318
EVN AL+ +
Sbjct: 266 EVNTALLAFL 275
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 110/306 (35%), Gaps = 47/306 (15%)
Query: 21 NDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESG 80
N I ++Y +G G V+LI G + +W Q L
Sbjct: 9 NSTSIDLYYEDHGTG-QPVVLIHGFPLSGHSWERQSAALLD------------------- 48
Query: 81 DGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGA-M 139
AG V +D RG G+SS P +Y T A D+ +++ L + A + G SMG
Sbjct: 49 ---AGYRVITYDRRGFGQSSQPTTGYDYDT--FAADLNTVLETLDLQDAVLVGFSMGTGE 103
Query: 140 IACKLAAMVPERVLSLALLNVTGGGFQCCPKL----DLQTLSIAIRFFRAKTPEKRAAVD 195
+A +++ R+ +A L P L D + FF +A D
Sbjct: 104 VARYVSSYGTARIAKVAFLA------SLEPFLLKTDDNPDGAAPQEFFDGIVAAVKA--D 155
Query: 196 LDTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQ 255
Y+ + + Y + +E V+ T + W + DI
Sbjct: 156 RYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDF-RADIP 214
Query: 256 TIRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDL---PGGHLVSHERTEEVNQ 312
I ++HG D I R+ K P A +++ P G L +H EEVN
Sbjct: 215 RIDVPAL---ILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTH--AEEVNT 269
Query: 313 ALIDLI 318
AL+ +
Sbjct: 270 ALLAFL 275
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 15/237 (6%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V D+ G +S V E + A+ V LMD L +AH+ G++MG A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMD-EQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALN 120
Query: 144 LAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE 203
A P+R+ L L+ G G + ++ + + + + + E + Y Q
Sbjct: 121 FALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
Query: 204 YLEEYVGSSTRRAILYQ-EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGF 262
+ E + AI Q E++K N+ Q +T + + I++ F
Sbjct: 181 LITEELLQGRWEAIQRQPEHLK---------NFLISAQKAPLSTWDVTAR-LGEIKAKTF 230
Query: 263 LVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIK 319
+ GR D + + +L + + G E +E N+ +ID ++
Sbjct: 231 ---ITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGQWAQWEHADEFNRLVIDFLR 284
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 110/307 (35%), Gaps = 47/307 (15%)
Query: 23 NGIKIFYRTYGRGPTKVI-LITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGD 81
+G++IFY+ +G VI G + D W QL
Sbjct: 8 DGVQIFYKDWGPRDAPVIHFHHGWPLSADDWDAQLLFFLAH------------------- 48
Query: 82 GGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIA 141
G V A D RG GRSS + A DV A++ HLG + A GHS G
Sbjct: 49 ---GYRVVAHDRRGHGRSSQ--VWDGHDMDHYADDVAAVVAHLGIQGAVHVGHSTGGGEV 103
Query: 142 CKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLS-------IAIRFFRAKTPEKRAAV 194
+ A PE ++ A+L P L +QT F+A+ RA
Sbjct: 104 VRYMARHPEDKVAKAVL------IAAVPPLMVQTPGNPGGLPKSVFDGFQAQVASNRAQF 157
Query: 195 DLDTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDI 254
D Y G I+ + +G+ + +DG + + +D+
Sbjct: 158 YRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAH---YDGIV--AFSQTDFTEDL 212
Query: 255 QTIRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPG-GHLVSHERTEEVNQA 313
+ I+ V V+HG D I + L+ KL P + G H + + +N
Sbjct: 213 KGIQQP---VLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPHGMPTTHADVINAD 269
Query: 314 LIDLIKA 320
L+ I++
Sbjct: 270 LLAFIRS 276
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 113/300 (37%), Gaps = 44/300 (14%)
Query: 25 IKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGA 84
++I + G+G V+L+ G GP G A + D VE A
Sbjct: 25 LRIHFNDCGQGDETVVLLHGS-------GPGATGWANFSRNIDP-------LVE-----A 65
Query: 85 GIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
G V D G G+S V + + + A+ + +++D L + H+ G+SMG +
Sbjct: 66 GYRVILLDCPGWGKSD-SVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAF 124
Query: 145 AAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEK-RAAVDL----DTH 199
PERV L L+ GG + + + + +R T E + +D+ +
Sbjct: 125 TLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSD 184
Query: 200 YSQEYLEEYVGSSTRRAILYQEYVKGISATGMQ-SNYGFDGQIHACWMHKMTQKDIQTIR 258
+ E + + R + +VK + A Q ++G ++ + QT+
Sbjct: 185 LTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFG----------PRLAEIKAQTL- 233
Query: 259 SAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLI 318
++ GR+D + RL + I GH E + NQ +++ +
Sbjct: 234 -------IVWGRNDRFVPMDAGLRLLSGIAGSELHIFRDCGHWAQWEHADAFNQLVLNFL 286
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 15/237 (6%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
AG V D+ G +S V E + A+ V LMD L +AH+ G++MG A
Sbjct: 62 AGYRVILKDSPGFNKSDAVVMD-EQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALN 120
Query: 144 LAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE 203
A P+R+ L L+ G G + ++ + + + + + E + Y Q
Sbjct: 121 FALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
Query: 204 YLEEYVGSSTRRAILYQ-EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGF 262
+ E + AI Q E++K N+ Q +T + + I++ F
Sbjct: 181 LITEELLQGRWEAIQRQPEHLK---------NFLISAQKAPLSTWDVTAR-LGEIKAKTF 230
Query: 263 LVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIK 319
+ GR D + + +L + + G E +E N+ +ID ++
Sbjct: 231 ---ITWGRDDRFVPLDHGLKLLWNIDDARLHVFSKCGAWAQWEHADEFNRLVIDFLR 284
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 85 GIEVCAFDNRGMGRSS-VPVKKTEY-TTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIAC 142
G V +D G G S+ +P ++ T ++ + A+ LG ++ HV G S G M+
Sbjct: 82 GRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEFHAVCTALGIERYHVLGQSWGGMLGA 141
Query: 143 KLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTP-EKRAAVD 195
++A P ++SLA+ C ++ S A RA+ P E RAA+D
Sbjct: 142 EIAVRQPSGLVSLAI---------CNSPASMRLWSEAAGDLRAQLPAETRAALD 186
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Query: 83 GAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIAC 142
G G A D G G S+ + Y+ ++ ++ + ++ L V G S+G + A
Sbjct: 103 GLGEPALAVDLPGHGHSAW-REDGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAI 161
Query: 143 KLAAMVPERVLSLALLNVTGGGFQCCPKLDL-QTLSIAIRFFRAKTPEKRAAVDLDT--- 198
+LAAM P+ V L L++VT Q +L Q ++A+ + P +A +DL
Sbjct: 162 RLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAA 221
Query: 199 -HYSQEYLEEYVGSSTRR 215
H + L V ++RR
Sbjct: 222 PHRDVKSLRRGVFHNSRR 239
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 108/307 (35%), Gaps = 47/307 (15%)
Query: 23 NGIKIFYRTYG-RGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGD 81
+G IFY+ +G R V+ G + D W Q+
Sbjct: 7 DGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSH------------------- 47
Query: 82 GGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM-GAMI 140
G V A D RG GRS P T + A DV AL + L + A GHS G +
Sbjct: 48 ---GYRVIAHDRRGHGRSDQP--STGHDMDTYAADVAALTEALDLRGAVHIGHSTGGGEV 102
Query: 141 ACKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRF---FRAKTPEKRAAVDLD 197
A +A P RV L++ K D + + FRA RA +D
Sbjct: 103 ARYVARAEPGRVAKAVLVSAVP---PVMVKSDTNPDGLPLEVFDEFRAALAANRAQFYID 159
Query: 198 THYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDI-QT 256
Y G++ + ++ +++G+ H + ++ D
Sbjct: 160 VPSGPFYGFNREGATVSQGLIDHWWLQGMMGA---------ANAHYECIAAFSETDFTDD 210
Query: 257 IRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMID---LPGGHLVSHERTEEVNQA 313
++ V V HG D + A + +L A + LP G L +H E +N
Sbjct: 211 LKRIDVPVLVAHGTDDQVVPYADAAPKSAELLANATLKSYEGLPHGMLSTHP--EVLNPD 268
Query: 314 LIDLIKA 320
L+ +K+
Sbjct: 269 LLAFVKS 275
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 85 GIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKL 144
G V A D G GRSS T Y++ + ++ L + + GHSMGAM+A +
Sbjct: 53 GYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAI 112
Query: 145 AAMVPERVLSLALLNV 160
A++ P+++ L L+ +
Sbjct: 113 ASVRPKKIKELILVEL 128
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 109/306 (35%), Gaps = 47/306 (15%)
Query: 21 NDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESG 80
N I ++Y +G G V+LI G + +W Q L
Sbjct: 9 NSTSIDLYYEDHGTG-QPVVLIHGFPLSGHSWERQSAALLD------------------- 48
Query: 81 DGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGA-M 139
AG V +D RG G+SS P +Y T A D+ +++ L + A + G S G
Sbjct: 49 ---AGYRVITYDRRGFGQSSQPTTGYDYDT--FAADLNTVLETLDLQDAVLVGFSTGTGE 103
Query: 140 IACKLAAMVPERVLSLALLNVTGGGFQCCPKL----DLQTLSIAIRFFRAKTPEKRAAVD 195
+A +++ R+ +A L P L D + FF +A D
Sbjct: 104 VARYVSSYGTARIAKVAFLA------SLEPFLLKTDDNPDGAAPQEFFDGIVAAVKA--D 155
Query: 196 LDTHYSQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQ 255
Y+ + + Y + +E V+ T + W + DI
Sbjct: 156 RYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDF-RADIP 214
Query: 256 TIRSAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDL---PGGHLVSHERTEEVNQ 312
I ++HG D I R+ K P A +++ P G L +H EEVN
Sbjct: 215 RIDVPAL---ILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTH--AEEVNT 269
Query: 313 ALIDLI 318
AL+ +
Sbjct: 270 ALLAFL 275
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 89 CAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMV 148
A D RG G S P +T Y A D+ L+ L A + GHS+GA + AA
Sbjct: 98 IAVDQRGHGLSDKP--ETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKY 155
Query: 149 PERVLSLALLNVT 161
P+ V S+ ++ T
Sbjct: 156 PDLVRSVVAIDFT 168
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 20 LNDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVES 79
L+ + ++ G GP ++L+ G TH AW LA +D +L D
Sbjct: 16 LHTSAARLRVAVKGSGPP-LLLLHGYPQTHLAWHRIAPRLA------EDYSVVLADLRGY 68
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM 139
G E A D G +Y+ +A+D + M LG+++ V GH GA
Sbjct: 69 G------ESRALDEEG----------ADYSKAALARDQLETMGQLGFERFAVIGHDRGAR 112
Query: 140 IACKLAAMVPERVLSLALLNVT 161
+ +LA P+ V + L V
Sbjct: 113 VGYRLALDHPQAVAAFVSLTVV 134
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 27/142 (19%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
NG+ + G GPT ++ I G +W Q+ LA
Sbjct: 19 NGLNMHLAELGEGPT-ILFIHGFPELWYSWRHQMVYLAER-------------------- 57
Query: 83 GAGIEVCAFDNRGMGRSS-VPVK-KTEYTTKIMAKDVIALMDHLGWKQAHVF--GHSMGA 138
G A D RG G ++ P+ ++++ + DV+AL++ + + VF H GA
Sbjct: 58 --GYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGA 115
Query: 139 MIACKLAAMVPERVLSLALLNV 160
+IA L P++V +L L+V
Sbjct: 116 LIAWHLCLFRPDKVKALVNLSV 137
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 27/142 (19%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDG 82
NG+ + G GPT ++ I G +W Q+ LA
Sbjct: 19 NGLNMHLAELGEGPT-ILFIHGFPELWYSWRHQMVYLAER-------------------- 57
Query: 83 GAGIEVCAFDNRGMGRSS-VPVK-KTEYTTKIMAKDVIALMDHLGWKQAHVF--GHSMGA 138
G A D RG G ++ P+ ++++ + DV+AL++ + + VF H GA
Sbjct: 58 --GYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGA 115
Query: 139 MIACKLAAMVPERVLSLALLNV 160
+IA L P++V +L L+V
Sbjct: 116 LIAWHLCLFRPDKVKALVNLSV 137
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 37 TKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGAGIEVCAFDNRGM 96
+ ++L+ GL G+ D G + L +D I+Q D R
Sbjct: 17 SPIVLVHGLFGSLDNLGVLARDLV-------NDHNIIQ----------------VDVRNH 53
Query: 97 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 156
G S ++ MA+D++ +D L +A GHSMG L A+ P+R+ L
Sbjct: 54 GLSP---REPVMNYPAMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLV 110
Query: 157 LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSS 212
+++ + ++ A+ A+T ++ AA+ + H ++E + +++ S
Sbjct: 111 AIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAI-MRQHLNEEGVIQFLLKS 165
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
+G V A D G G+S PV + +YT + ++AL++ L + + G +
Sbjct: 73 SGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLT 132
Query: 144 LAAMVPERVLSLALLN 159
L P R L ++N
Sbjct: 133 LPMADPSRFKRLIIMN 148
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
+G V A D G G+S PV + +YT + ++AL++ L + + G +
Sbjct: 73 SGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLT 132
Query: 144 LAAMVPERVLSLALLN 159
L P R L ++N
Sbjct: 133 LPMADPSRFKRLIIMN 148
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 25/128 (19%)
Query: 32 YGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGAGIEVCAF 91
Y P V+LI+GL G+ W PQL +L+ +V +
Sbjct: 12 YADAPV-VVLISGLGGSGSYWLPQL--------------AVLEQE---------YQVVCY 47
Query: 92 DNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPER 151
D RG G + + + +Y+ A ++ + G + V GH++GA++ +LA P
Sbjct: 48 DQRGTGNNPDTLAE-DYSIAQXAAELHQALVAAGIEHYAVVGHALGALVGXQLALDYPAS 106
Query: 152 VLSLALLN 159
V L +N
Sbjct: 107 VTVLISVN 114
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
+G V A D G G+S PV + +YT + ++AL++ L + + G +
Sbjct: 73 SGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLT 132
Query: 144 LAAMVPERVLSLALLN 159
L P R L ++N
Sbjct: 133 LPMADPSRFKRLIIMN 148
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
+G V A D G G+S PV + +YT + ++AL++ L + + G +
Sbjct: 73 SGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLT 132
Query: 144 LAAMVPERVLSLALLN 159
L P R L ++N
Sbjct: 133 LPMADPSRFKRLIIMN 148
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
+G V A D G G+S PV + +YT + ++AL++ L + + G +
Sbjct: 73 SGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLT 132
Query: 144 LAAMVPERVLSLALLN 159
L P R L ++N
Sbjct: 133 LPMADPSRFKRLIIMN 148
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 84 AGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACK 143
+G V A D G G+S PV + +YT + ++AL++ L + + G +
Sbjct: 73 SGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLT 132
Query: 144 LAAMVPERVLSLALLN 159
L P R L ++N
Sbjct: 133 LPMADPSRFKRLIIMN 148
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 37 TKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESGDGGAGIEVCAFDNRGM 96
+ ++L+ GL G+ D G + L +D I+Q D R
Sbjct: 17 SPIVLVHGLFGSLDNLGVLARDLV-------NDHNIIQ----------------VDVRNH 53
Query: 97 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 156
G S ++ MA+D++ +D +A GHSMG L A+ P+R+ L
Sbjct: 54 GLSP---REPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLV 110
Query: 157 LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSS 212
+++ + ++ A+ A+T ++ AA+ + H ++E + +++ S
Sbjct: 111 AIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAI-MRQHLNEEGVIQFLLKS 165
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 118/319 (36%), Gaps = 71/319 (22%)
Query: 21 NDNGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPNDDDETILQDSVESG 80
N I+I+Y +G G V+LI G + +W Q+ L VE
Sbjct: 13 NQAPIEIYYEDHGTG-KPVVLIHGWPLSGRSWEYQVPAL-----------------VE-- 52
Query: 81 DGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSM-GAM 139
AG V +D RG G+SS P + EY T D+ L++ L + + G S G
Sbjct: 53 ---AGYRVITYDRRGFGKSSQPWEGYEYDT--FTSDLHQLLEQLELQNVTLVGFSXGGGE 107
Query: 140 IACKLAAMVPERVLSLALLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTH 199
+A ++ +R+ + P L + PE A+D T
Sbjct: 108 VARYISTYGTDRIEKVVFAGA------VPPYL----------YKSEDHPE--GALDDAT- 148
Query: 200 YSQEYLEEY-VGSSTRRAILYQEYVKGISATGMQSN--------YGFDGQIHACWMHKMT 250
+E + G R E+ KG A G +++ Y +D I A K T
Sbjct: 149 -----IETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWD--IAAGASPKGT 201
Query: 251 QKDIQTIRSAGFLVS---------VIHGRHDVIAQICYARRLAEKLYPVARMIDLPGG-H 300
I F +IHG D Y+ +L + P +++ + GG H
Sbjct: 202 LDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVALIKGGPH 261
Query: 301 LVSHERTEEVNQALIDLIK 319
++ +E N+AL+ +K
Sbjct: 262 GLNATHAKEFNEALLLFLK 280
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 35/212 (16%)
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPVKKTE-YTTKIMAKDVIALMDHLGWKQAHVFGHSMGA 138
G+ G V A D G G+S+ + Y+ + A + +M LG A VFG S+G
Sbjct: 46 GEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGG 105
Query: 139 MIACKLAAMVPE-RVLSLA-----LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRA 192
I ++ A PE R L + G GF+ P + L I F + E A
Sbjct: 106 HIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDMALAGQEI----FSERDVESYA 161
Query: 193 AVDLDTHYSQEYLEEYVGSSTR-RAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQ 251
+ L+ + R R I+++++ G Q
Sbjct: 162 RSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGG---------------------NQ 200
Query: 252 KDIQTIRSAGFLVSVIHGRHDVIAQICYARRL 283
+DI + A ++V++GR + ++ + ++
Sbjct: 201 RDI--VAEAQLPIAVVNGRDEPFVELDFVSKV 230
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM 139
D + A D G S+P + T A ++ + D+LG +++H G S+G +
Sbjct: 88 ADWSSKYRTYAVDIIGDKNKSIP-ENVSGTRTDYANWLLDVFDNLGIEKSHXIGLSLGGL 146
Query: 140 IACKLAAMVPERVLSLALLN 159
PERV S A+L+
Sbjct: 147 HTXNFLLRXPERVKSAAILS 166
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 92/237 (38%), Gaps = 19/237 (8%)
Query: 86 IEVCAFDNRGMGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLA 145
V A D G G S + ++ + A + L D LG + + G+S+G A + A
Sbjct: 86 FHVLAVDQPGYGHSDKRAEHGQFN-RYAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFA 144
Query: 146 AMVPERVLSLALLNVTG---GGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQ 202
P R L L+ G F P ++ LS +F A T E A Y +
Sbjct: 145 LDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLS---KFSVAPTRENLEAFLRVMVYDK 201
Query: 203 EYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGF 262
+ + E + A G +S G D + W +++ +R
Sbjct: 202 NLITPELVDQRFALASTPESLTATRAMG-KSFAGADFEAGMMW------REVYRLRQP-- 252
Query: 263 LVSVIHGRHDVIAQICYARRLAEKLYPVARM-IDLPGGHLVSHERTEEVNQALIDLI 318
V +I GR D + + A +A K P A++ + GH V E+ +E N+ I+ +
Sbjct: 253 -VLLIWGREDRVNPLDGA-LVALKTIPRAQLHVFGQCGHWVQVEKFDEFNKLTIEFL 307
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 275 AQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIKASEKKISPQD----- 329
A + Y RRLA YPV RM+ L HL E E+ Q I + + + P D
Sbjct: 208 AHVIYLRRLAVSKYPVERMVTLE--HL--RELVEQAEQQDIPAAELLDPLLMPMDSPASD 263
Query: 330 --WTNLPQTSS 338
NLP TSS
Sbjct: 264 YPVVNLPLTSS 274
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 275 AQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIKASEKKISPQD----- 329
A + Y RRLA YPV RM+ L HL E E+ Q I + + + P D
Sbjct: 208 AHVIYLRRLAVSKYPVERMVTLE--HL--RELVEQAEQQDIPAAELLDPLLMPMDSPASD 263
Query: 330 --WTNLPQTSS 338
NLP TSS
Sbjct: 264 YPVVNLPLTSS 274
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 275 AQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIKASEKKISPQD----- 329
A + Y RRLA YPV RM+ L HL E E+ Q I + + + P D
Sbjct: 195 AHVIYLRRLAVSKYPVERMVTL--EHL--RELVEQAEQQDIPAAELLDPLLMPMDSPASD 250
Query: 330 --WTNLPQTSS 338
NLP TSS
Sbjct: 251 YPVVNLPLTSS 261
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 23 NGIKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGL 59
+G++IFY+ +G+G V+ I G DAW QLK +
Sbjct: 7 DGVEIFYKDWGQG-RPVVFIHGWPLNGDAWQDQLKAV 42
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 12/154 (7%)
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPVKKTE-YTTKIMAKDVIALMDHLGWKQAHVFGHSMGA 138
G+ G V A D G G+S+ + Y+ + A + +M LG A VFG S+G
Sbjct: 46 GEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGG 105
Query: 139 MIACKLAAMVPE-RVLSLA-----LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRA 192
I ++ A PE R L + G GF+ P + L I F + E A
Sbjct: 106 HIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDMALAGQEI----FSERDVESYA 161
Query: 193 AVDLDTHYSQEYLEEYVGSSTR-RAILYQEYVKG 225
+ L+ + R R I+++++ G
Sbjct: 162 RSTCGEPFEASLLDIVARTDGRARRIMFEKFGSG 195
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 35/212 (16%)
Query: 80 GDGGAGIEVCAFDNRGMGRSSVPVKKTE-YTTKIMAKDVIALMDHLGWKQAHVFGHSMGA 138
G+ G V A D G G+S+ + Y+ + A + +M LG A VFG +G
Sbjct: 46 GEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWGLGG 105
Query: 139 MIACKLAAMVPE-RVLSLA-----LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRA 192
I ++ A PE R L + G GF+ P + L I F + E A
Sbjct: 106 HIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDMALAGQEI----FSERDVESYA 161
Query: 193 AVDLDTHYSQEYLEEYVGSSTR-RAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQ 251
+ L+ + R R I+++++ G Q
Sbjct: 162 RSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGG---------------------NQ 200
Query: 252 KDIQTIRSAGFLVSVIHGRHDVIAQICYARRL 283
+DI + A ++V++GR + ++ + ++
Sbjct: 201 RDI--VAEAQLPIAVVNGRDEPFVELDFVSKV 230
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 25 IKIFYRTYGRGPTKVILITGLAGTHDAWGPQLKGLAGTDKPN--DDDETILQDSVESGDG 82
IK +R G G T + AW ++ + G+D P+ + E ILQ+ ++ G
Sbjct: 40 IKNMFRCMGYGETNP------SAYDTAWVARIPAVDGSDNPHFPETVEWILQNQLKDGSW 93
Query: 83 GAGIEVCAFD 92
G G A+D
Sbjct: 94 GEGFYFLAYD 103
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 257 IRSAGFLVSVI--HGRHDVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQAL 314
IRS G+ V V+ HG + Q+ A RL +K V D+ G H V E E+ Q
Sbjct: 261 IRSLGWRVMVVGCHGDPMIDRQMELAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFF 320
Query: 315 IDLIK 319
+ L K
Sbjct: 321 VILKK 325
>pdb|2P61|A Chain A, Crystal Structure Of Protein Tm1646 From Thermotoga
Maritima, Pfam Duf327
Length = 162
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 279 YARRLAEKLYPVARMIDLPGGHLVSHERTEEVNQALIDLIKASEKKISPQDWTNL 333
+ + + +K+Y +A D+ G H EEVN+ L+DL +KI +W +
Sbjct: 86 FLKLIEKKIYKLAGSFDMNSGRARLHLVVEEVNEKLMDLT----EKIMKNEWQTI 136
>pdb|3FLB|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
Biosynthetic Pathway - Form 2
Length = 267
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 113 MAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPE 150
+ ++ ++ G + +FGH+MGA+I +LA +PE
Sbjct: 72 LTNRLLEVLRPFGDRPLALFGHAMGAIIGYELALRMPE 109
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 88 VCAFDNRGMGRSSVPVKKTEYTTKI--MAKDVIALMDHLGWKQAHVFGHSMGAMIACKLA 145
V FD G G+S + T+ + + AKDV ++ L + GHS+ ++IA +
Sbjct: 57 VIVFDYVGSGQSDLESFSTKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIAS 116
Query: 146 AMVPERV 152
V +R+
Sbjct: 117 THVGDRI 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,132,449
Number of Sequences: 62578
Number of extensions: 472737
Number of successful extensions: 1004
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 98
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)