Query 017732
Match_columns 367
No_of_seqs 188 out of 1429
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 7.9E-66 1.7E-70 487.3 33.6 299 36-357 1-312 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1E-64 2.3E-69 471.0 31.2 311 30-360 6-331 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 2.3E-61 5E-66 464.4 34.4 304 34-355 11-334 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 2.7E-61 5.8E-66 459.2 33.3 297 38-352 1-316 (317)
5 COG0656 ARA1 Aldo/keto reducta 100.0 5.5E-62 1.2E-66 444.9 26.4 262 36-357 3-267 (280)
6 PRK10625 tas putative aldo-ket 100.0 1.6E-60 3.4E-65 459.2 34.0 300 36-355 1-340 (346)
7 PLN02587 L-galactose dehydroge 100.0 1.5E-58 3.2E-63 439.9 31.8 290 38-355 1-301 (314)
8 KOG1577 Aldo/keto reductase fa 100.0 7.7E-57 1.7E-61 411.0 23.5 264 38-357 6-288 (300)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 1.5E-55 3.3E-60 413.7 31.7 279 38-352 1-285 (285)
10 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.1E-55 1.1E-59 406.2 28.5 250 46-355 1-253 (267)
11 PRK10376 putative oxidoreducta 100.0 1.4E-54 3E-59 408.0 30.3 267 38-355 9-289 (290)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 6.9E-55 1.5E-59 408.9 25.8 276 50-353 1-282 (283)
13 PRK14863 bifunctional regulato 100.0 9.1E-54 2E-58 402.0 24.9 276 45-353 2-281 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.5E-52 3.2E-57 391.1 28.8 259 38-358 6-266 (275)
15 COG4989 Predicted oxidoreducta 100.0 4.8E-53 1E-57 370.2 21.0 279 36-353 1-292 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.1E-48 2.4E-53 345.1 24.1 277 34-343 20-310 (342)
17 COG1453 Predicted oxidoreducta 100.0 1.2E-47 2.6E-52 354.0 23.4 275 36-357 1-288 (391)
18 KOG3023 Glutamate-cysteine lig 98.0 1.4E-05 3E-10 71.0 6.4 71 177-252 156-226 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 90.2 7.5 0.00016 36.9 13.3 157 73-258 134-291 (316)
20 cd03315 MLE_like Muconate lact 88.4 15 0.00033 33.8 13.7 157 74-258 86-243 (265)
21 COG1748 LYS9 Saccharopine dehy 85.6 7.4 0.00016 38.1 10.1 80 75-173 79-158 (389)
22 PRK08392 hypothetical protein; 85.4 26 0.00057 31.1 16.2 155 76-250 15-178 (215)
23 PRK07945 hypothetical protein; 84.2 41 0.00088 32.3 16.5 161 76-250 112-288 (335)
24 cd01965 Nitrogenase_MoFe_beta_ 83.9 19 0.0004 35.9 12.5 109 110-221 66-187 (428)
25 PRK13796 GTPase YqeH; Provisio 83.7 25 0.00054 34.2 13.0 143 49-208 34-179 (365)
26 cd00408 DHDPS-like Dihydrodipi 83.3 35 0.00075 31.6 13.4 62 70-136 13-74 (281)
27 cd03316 MR_like Mandelate race 83.0 42 0.00092 32.2 14.3 157 74-253 140-298 (357)
28 PRK08609 hypothetical protein; 82.6 52 0.0011 34.1 15.5 160 77-250 351-522 (570)
29 PRK13361 molybdenum cofactor b 82.3 47 0.001 31.7 16.4 131 70-219 43-186 (329)
30 KOG0023 Alcohol dehydrogenase, 81.2 3.3 7.1E-05 39.3 5.5 150 35-249 173-324 (360)
31 PRK00164 moaA molybdenum cofac 81.0 52 0.0011 31.3 15.2 160 70-250 47-227 (331)
32 TIGR00190 thiC thiamine biosyn 80.9 16 0.00035 35.7 10.1 144 74-263 76-229 (423)
33 COG1751 Uncharacterized conser 80.2 29 0.00062 29.3 10.0 90 166-258 2-95 (186)
34 PF00682 HMGL-like: HMGL-like 79.1 48 0.001 29.8 12.6 167 72-258 11-195 (237)
35 TIGR00683 nanA N-acetylneurami 78.3 60 0.0013 30.4 13.5 32 70-101 16-48 (290)
36 cd01973 Nitrogenase_VFe_beta_l 77.4 83 0.0018 31.6 15.6 107 110-220 71-192 (454)
37 PF00701 DHDPS: Dihydrodipicol 77.3 45 0.00098 31.1 12.1 32 70-101 17-48 (289)
38 PRK13352 thiamine biosynthesis 76.8 25 0.00055 34.5 10.1 151 74-264 76-233 (431)
39 TIGR01278 DPOR_BchB light-inde 76.1 92 0.002 31.8 14.7 105 110-221 70-193 (511)
40 cd00950 DHDPS Dihydrodipicolin 75.9 60 0.0013 30.1 12.5 32 70-101 16-47 (284)
41 cd01966 Nitrogenase_NifN_1 Nit 75.2 91 0.002 30.9 14.7 108 110-220 66-188 (417)
42 TIGR02932 vnfK_nitrog V-contai 74.1 98 0.0021 31.1 14.1 108 110-221 74-197 (457)
43 PRK10558 alpha-dehydro-beta-de 73.6 41 0.00088 31.0 10.4 104 182-339 9-115 (256)
44 cd01974 Nitrogenase_MoFe_beta 73.2 67 0.0014 32.0 12.7 108 110-220 70-191 (435)
45 PRK15408 autoinducer 2-binding 72.1 90 0.002 29.8 12.9 89 126-222 23-111 (336)
46 CHL00076 chlB photochlorophyll 71.9 1.2E+02 0.0025 31.1 14.2 140 110-256 70-248 (513)
47 cd03174 DRE_TIM_metallolyase D 71.2 23 0.0005 32.2 8.4 106 141-253 15-135 (265)
48 PRK07535 methyltetrahydrofolat 71.1 79 0.0017 29.2 11.8 101 143-253 23-123 (261)
49 PRK14476 nitrogenase molybdenu 71.1 1.1E+02 0.0025 30.7 13.8 107 110-219 77-198 (455)
50 TIGR01282 nifD nitrogenase mol 70.8 1.2E+02 0.0027 30.5 16.0 104 110-220 116-237 (466)
51 cd00952 CHBPH_aldolase Trans-o 69.3 1E+02 0.0023 29.1 12.6 51 70-120 24-74 (309)
52 PRK09856 fructoselysine 3-epim 69.3 68 0.0015 29.4 11.1 50 237-302 94-143 (275)
53 PRK09613 thiH thiamine biosynt 69.0 1.4E+02 0.0029 30.3 15.4 105 142-251 115-237 (469)
54 PF07021 MetW: Methionine bios 68.8 31 0.00067 30.4 8.0 152 79-258 5-171 (193)
55 PRK02910 light-independent pro 68.6 1.4E+02 0.0031 30.5 14.2 104 110-221 70-193 (519)
56 TIGR01862 N2-ase-Ialpha nitrog 68.6 1.3E+02 0.0027 30.2 13.5 104 110-220 102-221 (443)
57 TIGR00674 dapA dihydrodipicoli 67.4 1.1E+02 0.0023 28.5 12.8 31 70-100 14-44 (285)
58 PRK10128 2-keto-3-deoxy-L-rham 66.9 74 0.0016 29.5 10.6 104 183-340 9-115 (267)
59 PF00148 Oxidored_nitro: Nitro 66.1 64 0.0014 31.5 10.7 141 110-256 59-227 (398)
60 TIGR03239 GarL 2-dehydro-3-deo 66.0 68 0.0015 29.4 10.1 101 185-339 5-108 (249)
61 cd03322 rpsA The starvation se 65.9 1.3E+02 0.0029 29.0 14.5 146 74-254 127-273 (361)
62 PRK14461 ribosomal RNA large s 65.7 59 0.0013 31.7 9.9 94 166-259 232-354 (371)
63 TIGR01928 menC_lowGC/arch o-su 65.2 1.3E+02 0.0028 28.6 13.9 153 74-258 133-286 (324)
64 cd03321 mandelate_racemase Man 65.0 1.2E+02 0.0026 29.2 12.3 152 74-252 142-294 (355)
65 PRK00208 thiG thiazole synthas 64.9 1.1E+02 0.0025 28.0 17.7 70 141-211 72-143 (250)
66 PRK07328 histidinol-phosphatas 64.5 1.2E+02 0.0026 28.0 11.9 166 77-250 20-225 (269)
67 cd02930 DCR_FMN 2,4-dienoyl-Co 63.9 1.4E+02 0.0031 28.7 12.5 16 79-94 141-156 (353)
68 PF03102 NeuB: NeuB family; I 63.9 59 0.0013 29.7 9.2 117 72-206 53-186 (241)
69 PRK07329 hypothetical protein; 63.9 1.1E+02 0.0024 27.8 11.1 101 149-251 83-213 (246)
70 cd01976 Nitrogenase_MoFe_alpha 63.5 1.6E+02 0.0035 29.2 17.9 104 110-220 83-202 (421)
71 cd00954 NAL N-Acetylneuraminic 63.3 1.3E+02 0.0028 28.0 13.7 32 70-101 16-48 (288)
72 PRK03170 dihydrodipicolinate s 63.2 1.3E+02 0.0028 28.0 13.1 31 70-100 17-47 (292)
73 TIGR02666 moaA molybdenum cofa 63.0 1.4E+02 0.0031 28.3 16.4 133 70-221 41-187 (334)
74 cd04728 ThiG Thiazole synthase 62.5 1.3E+02 0.0027 27.6 18.7 70 141-211 72-143 (248)
75 PRK05588 histidinol-phosphatas 62.4 1.2E+02 0.0027 27.5 14.8 164 75-251 16-214 (255)
76 cd00740 MeTr MeTr subgroup of 61.9 1.3E+02 0.0028 27.6 12.4 105 142-255 23-128 (252)
77 TIGR02370 pyl_corrinoid methyl 61.4 48 0.001 29.1 8.0 149 73-247 10-164 (197)
78 TIGR03822 AblA_like_2 lysine-2 59.6 1.6E+02 0.0035 28.0 15.7 134 72-218 119-260 (321)
79 PRK09490 metH B12-dependent me 59.5 2.2E+02 0.0047 32.6 14.2 93 157-258 395-492 (1229)
80 cd03327 MR_like_2 Mandelate ra 59.4 1.7E+02 0.0036 28.0 13.4 158 73-253 120-280 (341)
81 COG1149 MinD superfamily P-loo 59.2 23 0.0005 32.9 5.6 93 154-257 155-250 (284)
82 TIGR00542 hxl6Piso_put hexulos 58.9 1.1E+02 0.0023 28.3 10.3 50 237-302 98-147 (279)
83 PRK04147 N-acetylneuraminate l 58.6 1.6E+02 0.0034 27.5 12.8 32 70-101 19-51 (293)
84 TIGR03597 GTPase_YqeH ribosome 58.4 1.6E+02 0.0035 28.5 11.8 143 49-208 28-173 (360)
85 COG0135 TrpF Phosphoribosylant 58.1 66 0.0014 28.7 8.2 91 142-251 10-103 (208)
86 cd07944 DRE_TIM_HOA_like 4-hyd 57.8 67 0.0015 29.7 8.7 107 140-252 15-128 (266)
87 cd01967 Nitrogenase_MoFe_alpha 57.7 1.9E+02 0.0042 28.2 14.7 103 110-219 72-189 (406)
88 COG0279 GmhA Phosphoheptose is 57.3 87 0.0019 26.9 8.3 123 75-210 28-155 (176)
89 cd01981 Pchlide_reductase_B Pc 56.7 2.1E+02 0.0046 28.3 14.5 106 110-221 70-197 (430)
90 PRK05692 hydroxymethylglutaryl 56.6 41 0.00088 31.6 7.1 105 142-252 23-139 (287)
91 PRK13958 N-(5'-phosphoribosyl) 56.4 39 0.00085 30.0 6.6 73 142-226 9-83 (207)
92 PRK14459 ribosomal RNA large s 55.7 2E+02 0.0044 28.1 11.8 99 160-258 236-360 (373)
93 PRK04452 acetyl-CoA decarbonyl 55.7 1.2E+02 0.0026 29.0 10.0 94 155-256 85-185 (319)
94 PF00682 HMGL-like: HMGL-like 55.5 79 0.0017 28.3 8.6 103 141-249 10-124 (237)
95 PF05913 DUF871: Bacterial pro 55.0 10 0.00022 36.8 2.8 205 73-336 12-235 (357)
96 COG0422 ThiC Thiamine biosynth 54.3 2.2E+02 0.0048 27.9 12.2 147 73-264 76-231 (432)
97 cd07943 DRE_TIM_HOA 4-hydroxy- 54.2 1.8E+02 0.0038 26.7 17.3 169 72-258 19-199 (263)
98 PF05690 ThiG: Thiazole biosyn 54.1 53 0.0012 29.9 6.9 132 48-210 8-142 (247)
99 cd03318 MLE Muconate Lactonizi 53.8 2.1E+02 0.0046 27.5 13.8 156 75-257 144-301 (365)
100 TIGR00735 hisF imidazoleglycer 53.3 1.8E+02 0.0039 26.5 11.7 88 154-249 163-253 (254)
101 cd04742 NPD_FabD 2-Nitropropan 51.8 70 0.0015 31.8 8.0 72 181-254 29-103 (418)
102 PF07994 NAD_binding_5: Myo-in 51.7 48 0.001 31.3 6.6 145 144-330 131-283 (295)
103 PLN02746 hydroxymethylglutaryl 51.5 89 0.0019 30.3 8.6 97 147-252 69-181 (347)
104 cd00739 DHPS DHPS subgroup of 51.0 2E+02 0.0044 26.4 15.3 101 142-254 21-128 (257)
105 TIGR02313 HpaI-NOT-DapA 2,4-di 50.5 2.2E+02 0.0047 26.7 13.7 32 70-101 16-47 (294)
106 cd00308 enolase_like Enolase-s 50.4 79 0.0017 28.2 7.8 88 163-258 120-208 (229)
107 PRK14017 galactonate dehydrata 50.4 2.5E+02 0.0054 27.3 12.2 157 74-254 125-287 (382)
108 COG2185 Sbm Methylmalonyl-CoA 50.3 1.5E+02 0.0033 24.8 12.5 108 76-210 27-135 (143)
109 TIGR01283 nifE nitrogenase mol 49.8 2.8E+02 0.0061 27.8 13.0 104 110-220 106-227 (456)
110 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.7 2.2E+02 0.0047 26.4 18.9 131 73-217 19-163 (275)
111 PF13407 Peripla_BP_4: Peripla 48.9 64 0.0014 28.8 7.0 76 144-224 13-88 (257)
112 COG1140 NarY Nitrate reductase 48.1 7.5 0.00016 37.5 0.6 54 189-248 263-317 (513)
113 PRK14464 ribosomal RNA large s 48.0 2.7E+02 0.0058 27.0 12.1 83 174-258 223-318 (344)
114 TIGR02311 HpaI 2,4-dihydroxyhe 47.7 2.2E+02 0.0048 26.0 10.3 103 183-339 3-108 (249)
115 PRK14457 ribosomal RNA large s 47.6 2.5E+02 0.0054 27.2 11.0 172 72-258 129-331 (345)
116 TIGR01496 DHPS dihydropteroate 47.3 2.3E+02 0.005 26.0 13.4 99 142-253 20-125 (257)
117 TIGR01228 hutU urocanate hydra 46.8 59 0.0013 32.8 6.5 80 126-222 157-252 (545)
118 COG4464 CapC Capsular polysacc 46.8 72 0.0016 28.6 6.4 31 71-101 16-46 (254)
119 PF01261 AP_endonuc_2: Xylose 46.8 89 0.0019 26.7 7.4 86 203-302 27-126 (213)
120 cd00423 Pterin_binding Pterin 46.8 2.3E+02 0.005 25.9 13.9 103 142-256 21-130 (258)
121 COG2102 Predicted ATPases of P 46.0 2.2E+02 0.0049 25.6 9.5 101 176-305 75-177 (223)
122 PRK05414 urocanate hydratase; 45.8 65 0.0014 32.6 6.7 80 126-222 166-261 (556)
123 PRK14463 ribosomal RNA large s 45.7 2.1E+02 0.0045 27.7 10.2 91 166-258 211-326 (349)
124 TIGR02668 moaA_archaeal probab 45.6 2.6E+02 0.0055 26.1 15.5 128 71-218 39-179 (302)
125 TIGR01285 nifN nitrogenase mol 45.5 3.2E+02 0.007 27.2 13.5 109 110-220 76-198 (432)
126 cd07943 DRE_TIM_HOA 4-hydroxy- 45.3 1.4E+02 0.003 27.4 8.7 27 141-168 18-44 (263)
127 PRK08195 4-hyroxy-2-oxovalerat 44.9 2.9E+02 0.0063 26.5 18.6 24 72-95 22-45 (337)
128 PRK10550 tRNA-dihydrouridine s 44.8 2.8E+02 0.0061 26.3 12.2 140 74-227 74-226 (312)
129 COG3623 SgaU Putative L-xylulo 44.2 62 0.0013 29.4 5.7 82 43-135 65-155 (287)
130 PRK01045 ispH 4-hydroxy-3-meth 44.2 1.5E+02 0.0032 28.1 8.6 112 190-334 156-275 (298)
131 cd00405 PRAI Phosphoribosylant 44.2 2.2E+02 0.0047 24.8 9.8 40 162-204 73-112 (203)
132 cd03329 MR_like_4 Mandelate ra 44.0 3.1E+02 0.0066 26.5 14.0 154 73-252 143-298 (368)
133 PRK06740 histidinol-phosphatas 43.7 3E+02 0.0065 26.3 11.3 100 149-250 156-288 (331)
134 PRK14477 bifunctional nitrogen 43.5 5E+02 0.011 28.8 14.8 109 110-221 556-676 (917)
135 PLN02444 HMP-P synthase 43.4 2E+02 0.0044 29.6 9.7 93 141-264 296-388 (642)
136 COG2089 SpsE Sialic acid synth 42.9 3.1E+02 0.0068 26.3 12.4 125 71-211 86-225 (347)
137 COG2179 Predicted hydrolase of 42.8 1.4E+02 0.003 25.8 7.3 85 154-249 22-110 (175)
138 TIGR02026 BchE magnesium-proto 42.5 3.8E+02 0.0083 27.2 13.2 75 175-252 223-303 (497)
139 cd03323 D-glucarate_dehydratas 42.4 3.4E+02 0.0074 26.6 13.4 152 73-255 168-321 (395)
140 PRK00912 ribonuclease P protei 42.3 2.6E+02 0.0055 25.1 10.9 145 75-251 16-172 (237)
141 PLN02363 phosphoribosylanthran 42.3 89 0.0019 28.8 6.7 80 133-226 49-130 (256)
142 TIGR01428 HAD_type_II 2-haloal 42.1 70 0.0015 27.5 5.9 63 147-210 61-127 (198)
143 TIGR00048 radical SAM enzyme, 41.8 1.8E+02 0.0039 28.2 9.1 92 165-258 218-334 (355)
144 TIGR03849 arch_ComA phosphosul 41.5 1.9E+02 0.0041 26.3 8.6 191 149-357 12-230 (237)
145 PRK12360 4-hydroxy-3-methylbut 41.4 1.7E+02 0.0038 27.4 8.6 110 190-334 157-274 (281)
146 PRK00730 rnpA ribonuclease P; 41.4 1.3E+02 0.0028 25.0 6.9 60 126-188 47-109 (138)
147 TIGR01210 conserved hypothetic 41.2 2.4E+02 0.0052 26.7 9.8 26 181-206 118-145 (313)
148 PRK01222 N-(5'-phosphoribosyl) 41.0 86 0.0019 27.9 6.3 79 133-226 5-85 (210)
149 PRK08195 4-hyroxy-2-oxovalerat 41.0 2E+02 0.0043 27.7 9.2 26 140-166 20-45 (337)
150 TIGR01286 nifK nitrogenase mol 40.9 4.2E+02 0.009 27.2 13.3 108 110-221 127-252 (515)
151 PRK14455 ribosomal RNA large s 40.5 1.9E+02 0.0041 28.1 9.0 83 175-259 244-339 (356)
152 PRK14456 ribosomal RNA large s 40.4 3.5E+02 0.0076 26.4 10.9 92 165-258 237-354 (368)
153 PRK14460 ribosomal RNA large s 40.4 3.1E+02 0.0066 26.6 10.5 170 71-258 129-333 (354)
154 PRK01313 rnpA ribonuclease P; 40.4 1.5E+02 0.0033 24.2 7.1 60 126-188 48-113 (129)
155 TIGR03217 4OH_2_O_val_ald 4-hy 40.0 2.1E+02 0.0046 27.4 9.2 17 323-339 229-245 (333)
156 PRK13753 dihydropteroate synth 39.6 3.2E+02 0.007 25.5 13.3 101 142-256 22-129 (279)
157 PRK14466 ribosomal RNA large s 39.0 2.6E+02 0.0057 27.0 9.6 93 165-259 210-327 (345)
158 PRK13210 putative L-xylulose 5 39.0 3E+02 0.0066 25.0 12.3 50 237-302 98-147 (284)
159 TIGR00216 ispH_lytB (E)-4-hydr 38.2 1.6E+02 0.0036 27.5 7.9 120 183-334 147-273 (280)
160 PRK00499 rnpA ribonuclease P; 37.9 1.7E+02 0.0037 23.1 7.0 61 126-189 39-104 (114)
161 PRK14462 ribosomal RNA large s 37.8 3.2E+02 0.007 26.5 10.1 90 168-259 226-340 (356)
162 PF02401 LYTB: LytB protein; 37.8 1.7E+02 0.0037 27.4 7.9 112 190-334 155-274 (281)
163 cd07937 DRE_TIM_PC_TC_5S Pyruv 37.7 1.8E+02 0.0038 27.0 8.1 37 323-359 233-271 (275)
164 KOG4175 Tryptophan synthase al 37.5 1.7E+02 0.0038 25.9 7.3 124 44-211 92-228 (268)
165 PRK14453 chloramphenicol/florf 37.4 3.3E+02 0.0071 26.3 10.1 98 161-258 203-331 (347)
166 cd01977 Nitrogenase_VFe_alpha 37.3 4.2E+02 0.009 26.1 13.5 104 110-219 72-191 (415)
167 COG2069 CdhD CO dehydrogenase/ 36.8 2.5E+02 0.0054 26.6 8.5 93 155-257 160-262 (403)
168 PRK13209 L-xylulose 5-phosphat 36.8 3.3E+02 0.0072 24.8 12.4 50 237-302 103-152 (283)
169 cd07940 DRE_TIM_IPMS 2-isoprop 36.4 3.4E+02 0.0074 24.9 13.6 26 72-97 17-42 (268)
170 cd00739 DHPS DHPS subgroup of 36.2 3.5E+02 0.0075 24.9 11.7 106 79-201 87-209 (257)
171 PF11242 DUF2774: Protein of u 36.1 48 0.001 23.3 2.9 23 292-314 15-37 (63)
172 PRK09856 fructoselysine 3-epim 36.1 2.4E+02 0.0052 25.6 8.8 61 195-257 3-71 (275)
173 PRK11194 ribosomal RNA large s 36.1 3.2E+02 0.0069 26.7 9.8 82 176-259 242-339 (372)
174 COG0820 Predicted Fe-S-cluster 35.8 2.6E+02 0.0056 27.1 8.9 91 166-259 216-332 (349)
175 PRK09284 thiamine biosynthesis 35.2 4E+02 0.0087 27.5 10.3 93 141-264 291-383 (607)
176 cd01968 Nitrogenase_NifE_I Nit 35.2 4.4E+02 0.0096 25.8 18.6 105 110-221 71-189 (410)
177 PRK03031 rnpA ribonuclease P; 35.2 1.9E+02 0.0042 23.1 7.0 62 126-189 48-114 (122)
178 PRK12268 methionyl-tRNA synthe 35.1 1.5E+02 0.0032 30.5 7.8 47 145-193 73-119 (556)
179 PRK05660 HemN family oxidoredu 34.8 4.4E+02 0.0095 25.6 13.3 76 181-256 108-197 (378)
180 TIGR00381 cdhD CO dehydrogenas 34.4 4.6E+02 0.01 25.8 11.2 94 156-259 150-253 (389)
181 COG4130 Predicted sugar epimer 34.3 2.4E+02 0.0051 25.5 7.7 83 201-302 50-136 (272)
182 PRK05301 pyrroloquinoline quin 34.1 4.4E+02 0.0095 25.4 15.7 129 70-218 44-184 (378)
183 PRK03459 rnpA ribonuclease P; 34.0 1.9E+02 0.0041 23.3 6.7 62 125-189 48-114 (122)
184 cd07948 DRE_TIM_HCS Saccharomy 33.7 3.8E+02 0.0083 24.6 9.7 94 148-252 24-131 (262)
185 cd04743 NPD_PKS 2-Nitropropane 33.6 3.6E+02 0.0077 25.8 9.5 65 186-253 23-89 (320)
186 cd01321 ADGF Adenosine deamina 33.6 4.4E+02 0.0096 25.3 11.2 157 76-251 71-251 (345)
187 PRK09427 bifunctional indole-3 33.3 2E+02 0.0044 28.9 8.1 72 142-227 265-338 (454)
188 TIGR03217 4OH_2_O_val_ald 4-hy 33.3 4.4E+02 0.0096 25.2 18.5 24 72-95 21-44 (333)
189 COG1121 ZnuC ABC-type Mn/Zn tr 33.3 92 0.002 28.7 5.3 47 160-208 155-205 (254)
190 COG2896 MoaA Molybdenum cofact 33.2 4.4E+02 0.0096 25.2 11.5 125 71-218 42-182 (322)
191 PLN02417 dihydrodipicolinate s 33.0 4E+02 0.0087 24.7 11.9 108 70-190 17-126 (280)
192 PRK13210 putative L-xylulose 5 33.0 3.8E+02 0.0082 24.4 11.2 99 155-255 25-154 (284)
193 COG2987 HutU Urocanate hydrata 32.5 70 0.0015 31.9 4.5 95 110-222 151-261 (561)
194 TIGR01927 menC_gamma/gm+ o-suc 32.4 2.5E+02 0.0054 26.5 8.3 87 163-259 183-270 (307)
195 PRK06424 transcription factor; 32.2 2.1E+02 0.0046 23.9 6.9 79 237-315 24-111 (144)
196 TIGR03822 AblA_like_2 lysine-2 32.1 4.5E+02 0.0097 25.0 12.8 84 175-259 151-240 (321)
197 PRK05283 deoxyribose-phosphate 32.0 3.5E+02 0.0076 25.0 8.8 80 76-164 148-227 (257)
198 cd03324 rTSbeta_L-fuconate_deh 32.0 5.2E+02 0.011 25.6 13.9 152 74-253 197-352 (415)
199 TIGR01502 B_methylAsp_ase meth 31.9 2.4E+02 0.0052 27.9 8.3 84 167-255 267-357 (408)
200 TIGR03699 mena_SCO4550 menaqui 31.8 4.6E+02 0.0099 24.9 12.5 25 71-95 71-95 (340)
201 PRK01492 rnpA ribonuclease P; 31.8 2.6E+02 0.0057 22.4 7.2 60 126-187 47-114 (118)
202 COG0218 Predicted GTPase [Gene 31.7 3.7E+02 0.008 23.8 9.6 128 35-189 62-198 (200)
203 PF01175 Urocanase: Urocanase; 31.7 1.2E+02 0.0027 30.7 6.2 81 125-222 155-251 (546)
204 cd03317 NAAAR N-acylamino acid 31.7 4.6E+02 0.01 25.0 13.7 151 75-257 139-290 (354)
205 TIGR02534 mucon_cyclo muconate 31.4 4.8E+02 0.01 25.1 14.6 153 79-258 147-301 (368)
206 PRK08208 coproporphyrinogen II 31.4 5.3E+02 0.011 25.6 13.0 65 151-215 143-220 (430)
207 TIGR00126 deoC deoxyribose-pho 31.4 3.8E+02 0.0082 23.9 8.9 77 72-162 129-205 (211)
208 PRK13478 phosphonoacetaldehyde 31.2 2.1E+02 0.0045 26.1 7.5 70 177-247 104-173 (267)
209 COG3215 PilZ Tfp pilus assembl 31.1 1.3E+02 0.0029 23.5 5.0 50 75-136 20-69 (117)
210 PLN02746 hydroxymethylglutaryl 31.1 5E+02 0.011 25.1 14.4 27 72-98 65-91 (347)
211 PF13378 MR_MLE_C: Enolase C-t 30.9 52 0.0011 25.6 2.9 55 198-258 3-57 (111)
212 TIGR01422 phosphonatase phosph 30.5 2.3E+02 0.0049 25.5 7.5 71 176-247 101-171 (253)
213 cd04740 DHOD_1B_like Dihydroor 30.4 4.4E+02 0.0096 24.4 13.5 157 74-247 101-286 (296)
214 cd05007 SIS_Etherase N-acetylm 30.1 4.3E+02 0.0094 24.2 11.8 121 75-208 36-162 (257)
215 cd03174 DRE_TIM_metallolyase D 29.9 4.1E+02 0.009 23.8 15.3 170 72-258 16-204 (265)
216 cd03325 D-galactonate_dehydrat 29.8 5.1E+02 0.011 24.8 15.5 158 74-253 124-285 (352)
217 cd03328 MR_like_3 Mandelate ra 29.7 5.1E+02 0.011 24.9 14.4 152 74-253 139-293 (352)
218 PRK08776 cystathionine gamma-s 29.7 5E+02 0.011 25.5 10.3 71 180-254 113-183 (405)
219 COG0635 HemN Coproporphyrinoge 29.5 5.2E+02 0.011 25.6 10.3 60 141-202 200-276 (416)
220 TIGR02931 anfK_nitrog Fe-only 29.5 5.9E+02 0.013 25.6 16.1 107 110-220 77-199 (461)
221 PF00290 Trp_syntA: Tryptophan 29.4 2.3E+02 0.005 26.2 7.3 71 177-252 72-146 (259)
222 COG0773 MurC UDP-N-acetylmuram 29.4 44 0.00095 33.5 2.7 119 149-323 21-141 (459)
223 PRK09140 2-dehydro-3-deoxy-6-p 29.4 3.3E+02 0.0071 24.1 8.1 27 309-336 97-123 (206)
224 PRK15072 bifunctional D-altron 29.2 3.5E+02 0.0075 26.6 9.0 84 163-254 232-316 (404)
225 KOG0059 Lipid exporter ABCA1 a 29.0 1.9E+02 0.004 31.9 7.7 69 141-211 669-767 (885)
226 PRK07534 methionine synthase I 29.0 5.2E+02 0.011 24.8 21.5 151 74-227 44-213 (336)
227 PLN00191 enolase 28.9 4.2E+02 0.0091 26.7 9.5 97 143-252 296-394 (457)
228 PLN02591 tryptophan synthase 28.4 3.7E+02 0.0081 24.6 8.4 90 148-247 15-107 (250)
229 PF06415 iPGM_N: BPG-independe 28.2 2.4E+02 0.0053 25.4 7.0 76 176-251 13-99 (223)
230 cd07945 DRE_TIM_CMS Leptospira 28.1 4.9E+02 0.011 24.2 12.8 25 73-97 17-42 (280)
231 PRK14465 ribosomal RNA large s 28.0 5.6E+02 0.012 24.7 9.9 92 165-258 215-330 (342)
232 PRK04390 rnpA ribonuclease P; 27.9 3E+02 0.0064 22.0 6.9 62 126-189 45-110 (120)
233 cd02070 corrinoid_protein_B12- 27.7 4.1E+02 0.009 23.1 9.6 21 73-93 9-29 (201)
234 PRK04820 rnpA ribonuclease P; 27.6 3.2E+02 0.0069 22.8 7.2 62 126-189 49-114 (145)
235 COG4555 NatA ABC-type Na+ tran 27.5 2.5E+02 0.0053 25.4 6.6 68 141-210 104-201 (245)
236 PLN02951 Molybderin biosynthes 27.5 5.8E+02 0.013 24.8 15.0 138 71-229 89-239 (373)
237 PF01619 Pro_dh: Proline dehyd 27.4 1.6E+02 0.0035 27.8 6.1 160 75-257 92-284 (313)
238 TIGR00398 metG methionyl-tRNA 27.3 3.4E+02 0.0074 27.7 8.9 48 144-193 67-114 (530)
239 TIGR01917 gly_red_sel_B glycin 27.3 2.9E+02 0.0062 27.5 7.7 74 180-255 289-373 (431)
240 PRK13803 bifunctional phosphor 27.2 3.4E+02 0.0074 28.5 8.9 96 142-250 11-108 (610)
241 COG0159 TrpA Tryptophan syntha 27.1 4.6E+02 0.01 24.3 8.7 16 237-252 138-153 (265)
242 PRK09485 mmuM homocysteine met 27.1 5.3E+02 0.012 24.2 16.0 171 74-252 45-246 (304)
243 TIGR00238 KamA family protein. 27.0 5.6E+02 0.012 24.4 13.4 106 74-191 144-251 (331)
244 COG0826 Collagenase and relate 26.9 5.9E+02 0.013 24.6 10.9 30 308-337 129-159 (347)
245 PF01964 ThiC: ThiC family; I 26.8 57 0.0012 32.1 2.8 143 74-261 75-226 (420)
246 smart00633 Glyco_10 Glycosyl h 26.8 2.2E+02 0.0048 25.9 6.8 107 144-253 102-225 (254)
247 PF01118 Semialdhyde_dh: Semia 26.7 77 0.0017 25.2 3.3 27 74-100 76-102 (121)
248 PF00101 RuBisCO_small: Ribulo 26.4 3.1E+02 0.0068 21.3 7.5 74 71-170 10-84 (99)
249 PTZ00081 enolase; Provisional 26.2 4.9E+02 0.011 26.1 9.5 98 142-252 281-382 (439)
250 PRK07003 DNA polymerase III su 26.2 8.8E+02 0.019 26.5 13.9 97 142-248 99-197 (830)
251 COG2185 Sbm Methylmalonyl-CoA 26.1 3.5E+02 0.0075 22.6 7.0 56 194-259 19-76 (143)
252 COG2355 Zn-dependent dipeptida 26.0 3.7E+02 0.0079 25.7 8.1 30 322-351 270-300 (313)
253 cd06311 PBP1_ABC_sugar_binding 26.0 4.7E+02 0.01 23.3 9.7 75 144-221 14-90 (274)
254 PRK05406 LamB/YcsF family prot 25.9 2.4E+02 0.0053 25.8 6.6 74 52-158 13-95 (246)
255 PF11020 DUF2610: Domain of un 25.8 1.5E+02 0.0033 22.0 4.3 27 284-310 48-74 (82)
256 PRK08255 salicylyl-CoA 5-hydro 25.8 8.6E+02 0.019 26.2 13.6 109 127-248 617-737 (765)
257 PRK09545 znuA high-affinity zi 25.8 5.7E+02 0.012 24.1 9.5 51 201-258 237-287 (311)
258 PRK05985 cytosine deaminase; P 25.8 6.1E+02 0.013 24.5 14.0 19 75-93 98-116 (391)
259 COG2062 SixA Phosphohistidine 25.7 4.2E+02 0.0092 22.6 8.6 83 111-208 35-117 (163)
260 cd01971 Nitrogenase_VnfN_like 25.5 4.2E+02 0.009 26.3 8.9 106 110-222 71-192 (427)
261 PRK09061 D-glutamate deacylase 25.5 7.3E+02 0.016 25.3 12.4 113 75-201 169-286 (509)
262 KOG1321 Protoheme ferro-lyase 25.4 1.4E+02 0.0031 28.4 5.1 61 179-242 142-209 (395)
263 COG4152 ABC-type uncharacteriz 25.4 4.4E+02 0.0096 24.5 8.1 69 141-211 101-199 (300)
264 COG2159 Predicted metal-depend 25.3 2.2E+02 0.0047 26.8 6.5 97 155-255 55-166 (293)
265 KOG0259 Tyrosine aminotransfer 25.2 6.7E+02 0.015 24.8 17.7 167 75-268 81-282 (447)
266 PRK12570 N-acetylmuramic acid- 25.2 5.8E+02 0.013 24.0 11.2 120 75-208 45-171 (296)
267 TIGR00188 rnpA ribonuclease P 25.1 3.3E+02 0.0071 21.1 6.6 59 126-187 42-104 (105)
268 PLN03228 methylthioalkylmalate 25.0 4.3E+02 0.0093 27.0 8.9 107 141-254 102-230 (503)
269 TIGR01284 alt_nitrog_alph nitr 24.7 7.2E+02 0.016 24.9 13.8 104 110-219 109-228 (457)
270 KOG0369 Pyruvate carboxylase [ 24.6 2.7E+02 0.0059 29.5 7.2 178 75-311 43-224 (1176)
271 PRK12569 hypothetical protein; 24.5 2.8E+02 0.0061 25.4 6.7 77 52-159 14-99 (245)
272 PRK04930 glutathione-regulated 24.5 4.7E+02 0.01 22.7 8.1 42 142-183 127-168 (184)
273 PRK10508 hypothetical protein; 24.5 1E+02 0.0023 29.5 4.3 43 142-188 286-328 (333)
274 PLN02428 lipoic acid synthase 24.3 6.6E+02 0.014 24.3 13.7 165 72-257 130-325 (349)
275 PF13380 CoA_binding_2: CoA bi 24.3 2E+02 0.0043 22.7 5.3 15 237-251 93-107 (116)
276 PF15632 ATPgrasp_Ter: ATP-gra 24.1 6.4E+02 0.014 24.2 11.1 76 176-255 51-128 (329)
277 TIGR00655 PurU formyltetrahydr 24.1 5.9E+02 0.013 23.7 14.2 140 77-251 14-165 (280)
278 PRK12267 methionyl-tRNA synthe 23.7 4.5E+02 0.0098 27.7 9.2 49 144-194 72-120 (648)
279 PRK02901 O-succinylbenzoate sy 23.7 4.9E+02 0.011 24.8 8.7 71 180-258 173-244 (327)
280 cd02932 OYE_YqiM_FMN Old yello 23.7 6.4E+02 0.014 24.0 14.0 16 79-94 158-173 (336)
281 TIGR01290 nifB nitrogenase cof 23.7 7.5E+02 0.016 24.8 11.6 110 141-258 59-199 (442)
282 PF10100 DUF2338: Uncharacteri 23.5 7.1E+02 0.015 24.7 9.6 131 181-333 160-300 (429)
283 TIGR01501 MthylAspMutase methy 23.4 4.2E+02 0.0091 21.8 14.1 109 75-205 15-124 (134)
284 PF14871 GHL6: Hypothetical gl 23.2 62 0.0013 26.5 2.1 20 237-256 48-67 (132)
285 KOG0922 DEAH-box RNA helicase 23.2 85 0.0019 32.8 3.5 39 154-194 414-452 (674)
286 cd07938 DRE_TIM_HMGL 3-hydroxy 23.1 6E+02 0.013 23.5 15.3 127 72-217 17-163 (274)
287 PRK00396 rnpA ribonuclease P; 23.1 3.6E+02 0.0079 22.0 6.6 61 126-189 47-112 (130)
288 PRK14477 bifunctional nitrogen 23.0 1.1E+03 0.023 26.3 13.3 103 110-219 97-213 (917)
289 COG1151 6Fe-6S prismane cluste 23.0 5.4E+02 0.012 26.6 9.0 49 145-196 360-412 (576)
290 cd06300 PBP1_ABC_sugar_binding 23.0 5.3E+02 0.012 22.8 10.2 27 305-331 196-223 (272)
291 TIGR02814 pfaD_fam PfaD family 22.9 4.1E+02 0.009 26.7 8.1 70 182-253 35-107 (444)
292 PRK06015 keto-hydroxyglutarate 22.9 3E+02 0.0064 24.4 6.5 65 174-251 37-102 (201)
293 KOG0053 Cystathionine beta-lya 22.9 5.1E+02 0.011 25.7 8.6 80 177-261 127-207 (409)
294 PRK00133 metG methionyl-tRNA s 22.8 4E+02 0.0087 28.2 8.6 47 145-193 71-117 (673)
295 PF09989 DUF2229: CoA enzyme a 22.7 4.4E+02 0.0096 23.6 7.7 34 218-252 185-218 (221)
296 PF06506 PrpR_N: Propionate ca 22.6 76 0.0016 27.2 2.7 66 175-251 62-130 (176)
297 PRK14847 hypothetical protein; 22.5 6.7E+02 0.014 24.1 9.2 109 142-256 51-180 (333)
298 TIGR00262 trpA tryptophan synt 22.5 6E+02 0.013 23.2 11.5 116 148-304 23-143 (256)
299 TIGR00433 bioB biotin syntheta 22.4 6.1E+02 0.013 23.3 12.5 21 72-92 62-82 (296)
300 COG0626 MetC Cystathionine bet 22.3 4E+02 0.0087 26.3 7.8 45 217-261 150-194 (396)
301 PF04748 Polysacc_deac_2: Dive 22.3 5.6E+02 0.012 22.8 9.2 124 72-217 71-203 (213)
302 cd00019 AP2Ec AP endonuclease 22.2 6E+02 0.013 23.1 9.9 16 237-252 89-104 (279)
303 TIGR02637 RhaS rhamnose ABC tr 22.2 6E+02 0.013 23.1 10.6 74 144-221 13-86 (302)
304 TIGR01856 hisJ_fam histidinol 22.2 5.9E+02 0.013 23.0 9.7 166 75-250 15-233 (253)
305 PRK00077 eno enolase; Provisio 22.1 7.1E+02 0.015 24.7 9.8 96 143-251 262-361 (425)
306 PF13289 SIR2_2: SIR2-like dom 22.0 3.3E+02 0.0072 21.6 6.4 68 177-250 74-143 (143)
307 PRK05926 hypothetical protein; 21.9 7.4E+02 0.016 24.1 11.7 130 109-250 101-253 (370)
308 COG3113 Predicted NTP binding 21.9 1.8E+02 0.004 22.6 4.3 60 149-211 30-89 (99)
309 COG0159 TrpA Tryptophan syntha 21.8 6.5E+02 0.014 23.4 20.8 224 73-355 29-258 (265)
310 TIGR01060 eno phosphopyruvate 21.7 7.3E+02 0.016 24.6 9.7 81 163-251 278-362 (425)
311 PF00578 AhpC-TSA: AhpC/TSA fa 21.5 2.9E+02 0.0062 21.2 5.8 57 155-211 20-79 (124)
312 PLN02610 probable methionyl-tR 21.5 3.3E+02 0.0072 29.6 7.7 46 146-193 88-133 (801)
313 TIGR03700 mena_SCO4494 putativ 21.5 7.3E+02 0.016 23.8 12.7 47 142-190 79-125 (351)
314 TIGR01918 various_sel_PB selen 21.4 4.2E+02 0.0091 26.4 7.7 74 180-255 289-373 (431)
315 PF07287 DUF1446: Protein of u 21.4 3.5E+02 0.0075 26.4 7.1 89 180-303 12-100 (362)
316 PRK00087 4-hydroxy-3-methylbut 21.4 4.3E+02 0.0092 27.9 8.4 110 190-334 154-271 (647)
317 PRK00454 engB GTP-binding prot 21.3 4.9E+02 0.011 21.8 9.8 16 174-189 180-195 (196)
318 cd03770 SR_TndX_transposase Se 21.3 1.6E+02 0.0034 24.1 4.2 40 150-189 56-97 (140)
319 PRK05441 murQ N-acetylmuramic 21.0 7E+02 0.015 23.4 11.2 120 76-208 50-175 (299)
320 PRK12323 DNA polymerase III su 21.0 4.4E+02 0.0096 28.0 8.2 70 142-212 104-175 (700)
321 PRK10658 putative alpha-glucos 20.9 6.1E+02 0.013 27.0 9.4 89 161-252 234-344 (665)
322 PRK12928 lipoyl synthase; Prov 20.8 7E+02 0.015 23.3 10.9 165 72-255 87-280 (290)
323 PLN02389 biotin synthase 20.7 8E+02 0.017 24.0 13.9 105 70-191 114-227 (379)
324 cd03313 enolase Enolase: Enola 20.6 7.8E+02 0.017 24.3 9.7 97 142-251 261-361 (408)
325 PRK14040 oxaloacetate decarbox 20.6 4.8E+02 0.01 27.3 8.4 101 148-251 29-142 (593)
326 PRK11865 pyruvate ferredoxin o 20.5 7.3E+02 0.016 23.4 9.1 115 78-212 165-288 (299)
327 PRK14454 ribosomal RNA large s 20.5 7.7E+02 0.017 23.7 9.7 92 165-258 211-327 (342)
328 PF10566 Glyco_hydro_97: Glyco 20.4 3.3E+02 0.0072 25.4 6.5 58 199-256 28-96 (273)
329 PRK14478 nitrogenase molybdenu 20.4 8.9E+02 0.019 24.4 17.7 104 110-220 104-221 (475)
330 TIGR03821 AblA_like_1 lysine-2 20.4 7.4E+02 0.016 23.5 13.5 130 74-217 127-265 (321)
331 PRK15108 biotin synthase; Prov 20.2 7.8E+02 0.017 23.6 11.0 65 142-210 76-144 (345)
332 COG0761 lytB 4-Hydroxy-3-methy 20.1 5.9E+02 0.013 24.0 7.9 44 292-335 229-278 (294)
333 PF01120 Alpha_L_fucos: Alpha- 20.1 2.1E+02 0.0046 27.5 5.4 34 223-256 125-161 (346)
334 COG2873 MET17 O-acetylhomoseri 20.0 6.5E+02 0.014 24.8 8.4 134 83-253 72-205 (426)
335 TIGR01182 eda Entner-Doudoroff 20.0 6.2E+02 0.013 22.4 9.1 83 149-251 23-106 (204)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=7.9e-66 Score=487.33 Aligned_cols=299 Identities=39% Similarity=0.604 Sum_probs=268.0
Q ss_pred ceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHH
Q 017732 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (367)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (367)
|++++||+||++||+||||||.||+. ..+.+.+++.++|++|+|+|||+||||++||.|.| |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999874 23344567888999999999999999999999987 999999
Q ss_pred HHHhccCCCCCCcEEEEeccCCCC--------CCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-CChHHHHHHHHHH
Q 017732 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (367)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~g~~~--------~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l 186 (367)
||+.++. ||+++|+||+|..+ .+.++++|+++++.||+||||||||||++||||. .+.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9998762 79999999998753 3569999999999999999999999999999997 6789999999999
Q ss_pred HHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCC
Q 017732 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (367)
Q Consensus 187 ~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~ 266 (367)
+++||||+||+||++.+++.++...+ .+++++|.+||+++|+.+. +++++|+++||++++|+||++|+|+++|..
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998874 4799999999999986654 499999999999999999999999999987
Q ss_pred CCCCCCCCC---CCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCCCCC
Q 017732 267 QNPPTGPRG---RIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLT 342 (367)
Q Consensus 267 ~~~p~~~~~---~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~~L~ 342 (367)
. +.+.+. ..+.....++..++++.++++|+++|+|++|+||+|++++|.+ ++|+|+++++||++|+++++..|+
T Consensus 220 ~--~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~ 297 (316)
T COG0667 220 G--PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLS 297 (316)
T ss_pred C--cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCC
Confidence 5 333332 3456667788889999999999999999999999999999887 899999999999999999999999
Q ss_pred HHHHHHHHHhHhccC
Q 017732 343 DEEVNELRSMASEIK 357 (367)
Q Consensus 343 ~e~~~~l~~~~~~~~ 357 (367)
+++++.|++.....+
T Consensus 298 ~~~~~~l~~~~~~~~ 312 (316)
T COG0667 298 EEELAALDEISAEEP 312 (316)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999998876443
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1e-64 Score=470.96 Aligned_cols=311 Identities=37% Similarity=0.567 Sum_probs=273.3
Q ss_pred ccccccceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCch
Q 017732 30 ATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINS 109 (367)
Q Consensus 30 ~~~~~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~s 109 (367)
.+....|.++++|++|++||+||||||.+.. |+ .. .+++++.+++++|+|+|+|+||||++||+|.+
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~---~~---~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------ 72 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTT---FG---GQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------ 72 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeec---cc---cC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------
Confidence 3444579999999999999999999973322 22 22 57799999999999999999999999999987
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCC-----CCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-CChHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~-----~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L 183 (367)
|+++|+++++++. +|++++|+||++.. +.+.+...+...++.||+||++||||||++||+|+ .+.++++++|
T Consensus 73 E~llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL 150 (336)
T KOG1575|consen 73 EELLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRAL 150 (336)
T ss_pred HHHHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHH
Confidence 9999999999763 49999999999863 36678899999999999999999999999999997 7899999999
Q ss_pred HHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCC
Q 017732 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (367)
Q Consensus 184 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~ 263 (367)
.+++++|||||||+|+++++++.++...+. +++.++|++||++.|..+++++++.|++.||++++|+||++|+||++
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk 227 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGK 227 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccC
Confidence 999999999999999999999999998854 56999999999999999888999999999999999999999999999
Q ss_pred CCCCC-CCCCCCCCC-------CchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHH
Q 017732 264 YTPQN-PPTGPRGRI-------YTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFA 334 (367)
Q Consensus 264 ~~~~~-~p~~~~~~~-------~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl 334 (367)
|.... .+.+..... +.++ +...++++++.++|+++|+|++|+||+|+++++.+ +||||+++++||+||+
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni 305 (336)
T KOG1575|consen 228 YKLGEDSRNGDKRFQFLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENI 305 (336)
T ss_pred cccccccccccccccccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHH
Confidence 97543 344332111 1222 55778889999999999999999999999999886 8999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHhHhccCCCC
Q 017732 335 GALGWRLTDEEVNELRSMASEIKPVV 360 (367)
Q Consensus 335 ~a~~~~L~~e~~~~l~~~~~~~~~~~ 360 (367)
+|+...|+++++.+|++..+......
T Consensus 306 ~Al~~~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 306 GALSVKLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred hhhhccCCHHHHHHHHHhhccccCcC
Confidence 99999999999999999988776433
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.3e-61 Score=464.44 Aligned_cols=304 Identities=30% Similarity=0.452 Sum_probs=256.9
Q ss_pred ccceeEEcCCCCcccccccccccc-cCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCC--CCCCCCCchH
Q 017732 34 TAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSE 110 (367)
Q Consensus 34 ~~m~~~~lg~tg~~vs~lglGt~~-~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--g~s~~~~~sE 110 (367)
+.|++++||+||++||+||||||+ +|.. .+.+++.++|+.|+|.|||+||||+.||+ |.+ |
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E 74 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------E 74 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------H
Confidence 459999999999999999999996 3321 23477899999999999999999999995 777 9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeccCCC--C----CCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-CChHHHHHHH
Q 017732 111 TLLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (367)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~g~~--~----~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L 183 (367)
+.||++|++.... +|+++||+||+|.. + .+.+++.+++++++||+||||||||+|++|||+. .+.+++|++|
T Consensus 75 ~~lG~~l~~~~~~-~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al 153 (346)
T PRK09912 75 ENFGRLLREDFAA-YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASAL 153 (346)
T ss_pred HHHHHHHHhcccC-CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHH
Confidence 9999999864111 38999999998741 1 2367999999999999999999999999999976 4688999999
Q ss_pred HHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCC
Q 017732 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (367)
Q Consensus 184 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~ 263 (367)
++|+++||||+||||||++++++++.+.+...+++++++|++||++++..+..+++++|+++||++++|+||++|+|+++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 99999999999999999999999888877666678899999999999876655699999999999999999999999999
Q ss_pred CCCCCCCCCCCC-------CCCchHHH-hhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHH
Q 017732 264 YTPQNPPTGPRG-------RIYTAEYL-RNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFA 334 (367)
Q Consensus 264 ~~~~~~p~~~~~-------~~~~~~~~-~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl 334 (367)
+.... |.+.+. +.+.+... +...+.++.+.++|+++|+|++|+||+|++++|.+ ++|||+++++||++|+
T Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~ 312 (346)
T PRK09912 234 YLNGI-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENV 312 (346)
T ss_pred CCCCC-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH
Confidence 85432 221110 11222221 33456678899999999999999999999999977 8999999999999999
Q ss_pred hhh-CCCCCHHHHHHHHHhHhc
Q 017732 335 GAL-GWRLTDEEVNELRSMASE 355 (367)
Q Consensus 335 ~a~-~~~L~~e~~~~l~~~~~~ 355 (367)
+++ +++|+++++++|+++.++
T Consensus 313 ~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 313 QALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred hhhcCCCCCHHHHHHHHHhhCc
Confidence 998 479999999999998754
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.7e-61 Score=459.19 Aligned_cols=297 Identities=27% Similarity=0.398 Sum_probs=251.4
Q ss_pred eEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHH
Q 017732 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (367)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (367)
||+||+||++||+||||||++++. .++++++.++|+.|+|.|||+||||++||.|.| |++||++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 578999999999999999974221 145688999999999999999999999999887 99999999
Q ss_pred HhccCCCCCCcEEEEeccCCC-----CCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-CChHHHHHHHHHHHHcCC
Q 017732 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (367)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~g~~-----~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ 191 (367)
+.... +|++++|+||++.. ..+.+++.+++++++||+||||||||+|++|||+. .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86421 38999999998531 12468999999999999999999999999999986 467899999999999999
Q ss_pred ccEEeecCCCHHHHHHHHHHHHhcC-CCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCC
Q 017732 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPP 270 (367)
Q Consensus 192 ir~iGvS~~~~~~l~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p 270 (367)
||+||+|||+.+++.++...+...+ ++++++|++||+++++..+.+++++|+++||++++|+||++|+|+++|.... |
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~-~ 222 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGI-P 222 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCC-C
Confidence 9999999999999988876655544 5789999999999987544569999999999999999999999999986542 3
Q ss_pred CCCCCC-----CCch----HHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCC-
Q 017732 271 TGPRGR-----IYTA----EYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW- 339 (367)
Q Consensus 271 ~~~~~~-----~~~~----~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~- 339 (367)
.+.+.. ++.. .......+.++.++++|+++|+|++|+||+|++++|++ ++|+|+++++||++|+++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~ 302 (317)
T TIGR01293 223 PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVL 302 (317)
T ss_pred CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhcc
Confidence 222211 1111 11223456678899999999999999999999999887 799999999999999999987
Q ss_pred -CCCHHHHHHHHHh
Q 017732 340 -RLTDEEVNELRSM 352 (367)
Q Consensus 340 -~L~~e~~~~l~~~ 352 (367)
+|+++++++|+++
T Consensus 303 ~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 303 PKLSSSIIHEIDSI 316 (317)
T ss_pred CCCCHHHHHHHHhh
Confidence 9999999999875
No 5
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.5e-62 Score=444.91 Aligned_cols=262 Identities=32% Similarity=0.558 Sum_probs=236.0
Q ss_pred ceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHH
Q 017732 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (367)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (367)
+.+.+|++ |.+||.||||||++++. +.+.+.+..|++.|||+||||..||+ |+.+|+
T Consensus 3 ~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG~ 59 (280)
T COG0656 3 KTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVGE 59 (280)
T ss_pred CceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHHH
Confidence 45678887 88899999999998764 34889999999999999999999998 999999
Q ss_pred HHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCC--C-hHHHHHHHHHHHHcCCc
Q 017732 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGLV 192 (367)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~--~-~~~~~~~L~~l~~~G~i 192 (367)
++++.. .+|+++||+||+++ .+.+++.+.+++++||+|||+||+|||++|||.+. . ..++|++|++++++|||
T Consensus 60 aI~~s~--v~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~i 135 (280)
T COG0656 60 AIKESG--VPREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLI 135 (280)
T ss_pred HHHhcC--CCHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCc
Confidence 999943 46999999999976 56788999999999999999999999999999652 2 57999999999999999
Q ss_pred cEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCC
Q 017732 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (367)
Q Consensus 193 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~ 272 (367)
|+||||||+.++++++++. ..+.|++||++||++.++.+ ++++|+++||.+++|+||+.|-.
T Consensus 136 r~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~------------ 197 (280)
T COG0656 136 RAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGK------------ 197 (280)
T ss_pred cEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCcccccc------------
Confidence 9999999999999999876 34789999999999999876 99999999999999999996521
Q ss_pred CCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHHh
Q 017732 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSM 352 (367)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~ 352 (367)
.+.. +.+.+||++||.|++|++|+|+++++ +++||.+++++|+++|++++++.||+|||+.|+++
T Consensus 198 ----l~~~----------~~l~~Ia~k~g~t~AQv~L~W~i~~g-v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l 262 (280)
T COG0656 198 ----LLDN----------PVLAEIAKKYGKTPAQVALRWHIQRG-VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDAL 262 (280)
T ss_pred ----cccC----------hHHHHHHHHhCCCHHHHHHHHHHhCC-cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhh
Confidence 1222 18999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HhccC
Q 017732 353 ASEIK 357 (367)
Q Consensus 353 ~~~~~ 357 (367)
.....
T Consensus 263 ~~~~~ 267 (280)
T COG0656 263 DRGYG 267 (280)
T ss_pred ccccC
Confidence 87663
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.6e-60 Score=459.16 Aligned_cols=300 Identities=26% Similarity=0.401 Sum_probs=255.1
Q ss_pred ceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCC-------CCCCCCCc
Q 017732 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (367)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-------g~s~~~~~ 108 (367)
|++++||+||+.||+||||||+||.. .+.+++.++|+.|++.|||+||||+.||. |.+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998753 34588999999999999999999999984 655
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEeccCCCC----------CCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-----
Q 017732 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (367)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~----------~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~----- 173 (367)
|+.||++|+... +|++++|+||++... ..++++.+++++++||+||||||||||++|||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 389999999985311 1467999999999999999999999999999864
Q ss_pred -------------CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCC-CeeEeccccccccCCcchhcHH
Q 017732 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (367)
Q Consensus 174 -------------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~ 239 (367)
.+.+++|++|++|+++||||+||+|||+.+++.++...+...+. .+.++|++||++++..+ .+++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~-~~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFE-VGLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccch-hHHH
Confidence 24679999999999999999999999999999988776655544 48899999999998754 3699
Q ss_pred HHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCC---chHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 017732 240 AACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIY---TAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQD 316 (367)
Q Consensus 240 ~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~ 316 (367)
++|+++||++++|+||++|+|++++.....|.+.+...+ .+.......++++.++++|+++|+|++|+||+|++++|
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~ 300 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQP 300 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999865444433321112 11112334566789999999999999999999999999
Q ss_pred Ce-EEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHHhHhc
Q 017732 317 NV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMASE 355 (367)
Q Consensus 317 ~v-~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~ 355 (367)
.| ++|+|+++++||++|+++++++|++++++.|+++.+.
T Consensus 301 ~v~~~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 301 FVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred CCeeEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 87 7999999999999999999999999999999999753
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.5e-58 Score=439.92 Aligned_cols=290 Identities=22% Similarity=0.325 Sum_probs=245.4
Q ss_pred eEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHH
Q 017732 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (367)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (367)
||+||+||++||+||||||+||.. |+ .++.+++.++|++|++.|||+||||+.||+|.+ |..||++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~~-----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--FG-----PVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--CC-----CCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 578999999999999999999863 33 355689999999999999999999999999987 99999999
Q ss_pred HhccCCCCCCcEEEEeccCCCC--CCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCC----ChHHHHHHHHHHHHcCC
Q 017732 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGL 191 (367)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~g~~~--~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~----~~~~~~~~L~~l~~~G~ 191 (367)
++.+. +|+++||+||++..+ ..++++.+++++++||++|||||||+|++|||+.. ..+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 87532 389999999998532 35789999999999999999999999999999642 34689999999999999
Q ss_pred ccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCC
Q 017732 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 271 (367)
Q Consensus 192 ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~ 271 (367)
||+||+|||++++++.+........+.+..+|+.||+.++..+ +++++|+++||++++|+||++|+|++++.....+
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~- 222 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHP- 222 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCCCCCCC-
Confidence 9999999999998887766433222345667899999886443 6999999999999999999999999875321111
Q ss_pred CCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhC----CCCCHHHH
Q 017732 272 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALG----WRLTDEEV 346 (367)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~----~~L~~e~~ 346 (367)
. .+...++++.++++|+++++|++|+||+|++++|.| +||+|+++++||++|+++++ .+|+++++
T Consensus 223 -------~---~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~ 292 (314)
T PLN02587 223 -------A---PPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELL 292 (314)
T ss_pred -------C---CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHH
Confidence 0 123456677889999999999999999999999987 79999999999999999986 37999999
Q ss_pred HHHHHhHhc
Q 017732 347 NELRSMASE 355 (367)
Q Consensus 347 ~~l~~~~~~ 355 (367)
++|+++...
T Consensus 293 ~~l~~~~~~ 301 (314)
T PLN02587 293 SEVEAILAP 301 (314)
T ss_pred HHHHHhhcc
Confidence 999988754
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=7.7e-57 Score=410.97 Aligned_cols=264 Identities=29% Similarity=0.469 Sum_probs=233.4
Q ss_pred eEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHH
Q 017732 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (367)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (367)
..+|.+ |.+||.||||||+. +++++.+.++.|++.||||||||..|+| |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 677876 99999999999972 2478999999999999999999999999 99999999
Q ss_pred HhccCC--CCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCC-----------------ChHH
Q 017732 118 KERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (367)
Q Consensus 118 ~~~~~~--~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~-----------------~~~~ 178 (367)
++...+ .+|+++||+||+|+ ..+.++.++.+|++||++||+||+|+|++|||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 965322 37999999999976 45789999999999999999999999999998542 2468
Q ss_pred HHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccc
Q 017732 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 179 ~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
+|++|+++++.|++|+||||||+..++++++..+ .++|+++|++++++.++.. ++++|+++||.|.||||||.+
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~---ki~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLA---KIKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcC---CCCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 9999999999999999999999999999998876 3889999999999988764 999999999999999999986
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHhhhC
Q 017732 259 ALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALG 338 (367)
Q Consensus 259 ~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl~a~~ 338 (367)
-- + ...+.+ +.+.+||++|++|++|++|||.++++ ++|||.++|++||+||++.++
T Consensus 214 ~~-~------------~~ll~~----------~~l~~iA~K~~kt~aQIlLrw~~q~g-~~vipKS~~~~Ri~eN~~vfd 269 (300)
T KOG1577|consen 214 GR-G------------SDLLED----------PVLKEIAKKYNKTPAQILLRWALQRG-VSVIPKSSNPERIKENFKVFD 269 (300)
T ss_pred CC-c------------cccccC----------HHHHHHHHHhCCCHHHHHHHHHHhCC-cEEEeccCCHHHHHHHHhhcc
Confidence 21 0 012222 28999999999999999999999998 899999999999999999999
Q ss_pred CCCCHHHHHHHHHhHhccC
Q 017732 339 WRLTDEEVNELRSMASEIK 357 (367)
Q Consensus 339 ~~L~~e~~~~l~~~~~~~~ 357 (367)
+.||++|++.|+.+....|
T Consensus 270 f~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 270 FELTEEDMKKLDSLNSNER 288 (300)
T ss_pred ccCCHHHHHHHhhccccce
Confidence 9999999999998876665
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.5e-55 Score=413.74 Aligned_cols=279 Identities=42% Similarity=0.691 Sum_probs=245.3
Q ss_pred eEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHH
Q 017732 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (367)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (367)
+++||+||+.||+||||||.++.. | .+.+++.++++.|++.|||+||||+.||+|.+ |+.||++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~-------~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y-------VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C-------CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 578999999999999999988764 1 35689999999999999999999999999987 99999999
Q ss_pred HhccCCCCCCcEEEEeccCCCC---CCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCC-C-hHHHHHHHHHHHHcCCc
Q 017732 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-G-NEGFIDGLGDAVEQGLV 192 (367)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~g~~~---~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~-~-~~~~~~~L~~l~~~G~i 192 (367)
+..+ +|++++|+||+++.. ...+++.+++++++||++|++||||+|++|||+.. . ..++|++|+++|++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9865 389999999998643 23689999999999999999999999999999763 2 78999999999999999
Q ss_pred cEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCC
Q 017732 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (367)
Q Consensus 193 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~ 272 (367)
|+||||||+++.+.++.+.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.+++++.....+.
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~- 217 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP- 217 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC-
Confidence 99999999999999887664 35899999999999998754 59999999999999999999999987654332211
Q ss_pred CCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHH
Q 017732 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELRS 351 (367)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~ 351 (367)
. ......+..++.+++++++|+||+|++++|.+ ++|+|+++++|+++|++++.++|++++++.|++
T Consensus 218 -------~------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 218 -------E------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred -------h------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 0 01345788999999999999999999999876 899999999999999999999999999999986
Q ss_pred h
Q 017732 352 M 352 (367)
Q Consensus 352 ~ 352 (367)
+
T Consensus 285 ~ 285 (285)
T cd06660 285 L 285 (285)
T ss_pred C
Confidence 3
No 10
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.1e-55 Score=406.23 Aligned_cols=250 Identities=26% Similarity=0.408 Sum_probs=221.1
Q ss_pred cccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCC
Q 017732 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (367)
Q Consensus 46 ~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (367)
++||+||||||+++. +++.++++.|++.|||+||||+.||+ |+.||++|+.... +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999998643 67899999999999999999999996 9999999986432 3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC---CChHHHHHHHHHHHHcCCccEEeecCCCH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~~~ 202 (367)
|+++||+||++. ...+++.+++++++||+|||+||||+|++|||++ .+.+++|++|++|+++||||+||||||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999864 3577999999999999999999999999999965 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHH
Q 017732 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEY 282 (367)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~ 282 (367)
++++++++.+. ..+++++|++||++++.. +++++|+++||++++|+||++|.+.. .
T Consensus 134 ~~l~~~~~~~~--~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~~~-----------------~-- 189 (267)
T PRK11172 134 ALMKQAIAAVG--AENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKVLK-----------------D-- 189 (267)
T ss_pred HHHHHHHHhcC--CCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCcccC-----------------C--
Confidence 99998876421 126899999999999753 59999999999999999999985431 0
Q ss_pred HhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHHhHhc
Q 017732 283 LRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMASE 355 (367)
Q Consensus 283 ~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~ 355 (367)
+.++++|+++++|++|+||+|+++++ +++|+|+++++|+++|+++++++|+++++++|+++.++
T Consensus 190 --------~~l~~~a~~~~~s~aqval~w~l~~~-~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 --------PVIARIAAKHNATPAQVILAWAMQLG-YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred --------HHHHHHHHHhCCCHHHHHHHHHHhCC-CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 16889999999999999999999997 78999999999999999999999999999999999754
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-54 Score=407.97 Aligned_cols=267 Identities=24% Similarity=0.374 Sum_probs=229.7
Q ss_pred eEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHH
Q 017732 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (367)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (367)
+++|+ |++||+||||||+||+.++|+. ..+++++.++|++|++.|||+||||+.||+|.+ |++||+++
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l 76 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREAL 76 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHH
Confidence 34565 8999999999999987544543 235688999999999999999999999999877 99999999
Q ss_pred HhccCCCCCCcEEEEeccCCC-------CCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCC------CCChHHHHHHHH
Q 017732 118 KERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG------IWGNEGFIDGLG 184 (367)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~g~~-------~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~------~~~~~~~~~~L~ 184 (367)
+.. |+++||+||+|.. +...+++.+++++++||+||||||||+|++||++ ..+.+++|++|+
T Consensus 77 ~~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~ 151 (290)
T PRK10376 77 HPY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLA 151 (290)
T ss_pred hcC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHH
Confidence 642 7999999998642 2356799999999999999999999999988742 234689999999
Q ss_pred HHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCC
Q 017732 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (367)
Q Consensus 185 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~ 264 (367)
+|+++||||+||+|||+.+++.++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++..
T Consensus 152 ~l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~~~---- 220 (290)
T PRK10376 152 ELQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGFTP---- 220 (290)
T ss_pred HHHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCCCh----
Confidence 999999999999999999999888765 478999999999997643 599999999999999999974310
Q ss_pred CCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-CeEEecCCCCHHHHHHHHhhhCCCCCH
Q 017732 265 TPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQD-NVVPIPGAKNAEQAAEFAGALGWRLTD 343 (367)
Q Consensus 265 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~-~v~vi~g~~~~~~l~enl~a~~~~L~~ 343 (367)
+ ..+.+.++|+++++|++|+||+|+++++ .+++|+|+++++|+++|+++++++|++
T Consensus 221 -------------~----------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~ 277 (290)
T PRK10376 221 -------------L----------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSE 277 (290)
T ss_pred -------------h----------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCH
Confidence 0 0237889999999999999999999874 458999999999999999999999999
Q ss_pred HHHHHHHHhHhc
Q 017732 344 EEVNELRSMASE 355 (367)
Q Consensus 344 e~~~~l~~~~~~ 355 (367)
++++.|+++.++
T Consensus 278 e~~~~l~~~~~~ 289 (290)
T PRK10376 278 EVLAELDGIARE 289 (290)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=6.9e-55 Score=408.87 Aligned_cols=276 Identities=35% Similarity=0.579 Sum_probs=228.5
Q ss_pred cccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 017732 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (367)
Q Consensus 50 ~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~ 129 (367)
+||||||++|+. ..+++++.++|+.|++.|||+||||+.||+|.+ |++||++|++.. .+|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~--~~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSR--VPRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTS--STGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------cccccccccccc--cccccc
Confidence 689999998762 367899999999999999999999999999887 999999999933 248999
Q ss_pred EEEeccC---CCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-CC-hHHHHHHHHHHHHcCCccEEeecCCCHHH
Q 017732 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (367)
Q Consensus 130 ~I~tK~g---~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 204 (367)
+|+||+. ......+++.+++++++||++||+||||+|++|||+. .. .+++|++|++|+++|+||+||||||+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999992 1235789999999999999999999999999999987 45 79999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHh
Q 017732 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 284 (367)
Q Consensus 205 l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~ 284 (367)
++++ .+...++|+++|++||++++... .+++++|+++||++++|+||++|+|++++.....+........
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~------ 213 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREE-EGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRD------ 213 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGG-HHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSST------
T ss_pred cccc---ccccccccccccccccccccccc-ccccccccccccccccccccccCccccccccCCCcccccccch------
Confidence 8887 23344689999999999955443 4699999999999999999999999998876543322211101
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHHhH
Q 017732 285 NLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMA 353 (367)
Q Consensus 285 ~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~ 353 (367)
..+..+.+.++++++++|++|+||+|+++++.+ ++|+|+++++|+++|+++++++||++++++|+++.
T Consensus 214 -~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 214 -AQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp -HGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred -hhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 334456899999999999999999999998777 89999999999999999999999999999999875
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=9.1e-54 Score=401.97 Aligned_cols=276 Identities=18% Similarity=0.208 Sum_probs=226.9
Q ss_pred CcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCC
Q 017732 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (367)
Q Consensus 45 g~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~ 124 (367)
+++||+||||||+||+...|..+.++.++++++.++|+.|+|.|||+||||+.||. ||++||++|+...
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--------SE~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--------AETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--------HHHHHhhhhccCC---
Confidence 57899999999999863111111233467899999999999999999999999974 4999999997421
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC--CCh-HHHHHHHHHHHHcCCccEEeecCCC
Q 017732 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (367)
Q Consensus 125 ~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~--~~~-~~~~~~L~~l~~~G~ir~iGvS~~~ 201 (367)
+++++|+||. ...+++.+++++++||+||||||||+|++|||+. .+. +++|++|++|+++||||+||+|||+
T Consensus 71 -~~~~~i~tk~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVR----ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeeccccc----ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 4679999986 2457899999999999999999999999999975 223 6889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchH
Q 017732 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (367)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~ 281 (367)
++++.++... .+|+++|++||+++++.+..+++++|+++||++++|+||++|+|++... ..+ ..+
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~-----~~~--- 210 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP-----AQL--- 210 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc-----cch---
Confidence 9888776432 5899999999999997643469999999999999999999999975211 000 111
Q ss_pred HHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHHhH
Q 017732 282 YLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMA 353 (367)
Q Consensus 282 ~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~ 353 (367)
......+..+.+++.+++++++|+||+|++++|.| ++|+|+++++||++|+++.+.+++++.+++|..-.
T Consensus 211 --~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 211 --KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred --hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 12234456778888888999999999999999988 79999999999999999999999998888776543
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.5e-52 Score=391.07 Aligned_cols=259 Identities=25% Similarity=0.425 Sum_probs=225.9
Q ss_pred eEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHH
Q 017732 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (367)
Q Consensus 38 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al 117 (367)
+.+|. +|+.||+||||||+++ .+++.++|++|++.|||+||||+.||+ |+.||++|
T Consensus 6 ~~~l~-~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al 61 (275)
T PRK11565 6 VIKLQ-DGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKAL 61 (275)
T ss_pred eEEcC-CCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHHH
Confidence 45674 6999999999999753 378999999999999999999999986 99999999
Q ss_pred HhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCC--ChHHHHHHHHHHHHcCCccEE
Q 017732 118 KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAV 195 (367)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~--~~~~~~~~L~~l~~~G~ir~i 195 (367)
+.... +|++++|+||++ ..+++.+++++++||++|++||||+|++|||+.. ...++|++|++|+++|+||+|
T Consensus 62 ~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 62 KEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred HHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEE
Confidence 87532 389999999985 3467899999999999999999999999999762 367999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCC
Q 017732 196 GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRG 275 (367)
Q Consensus 196 GvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~ 275 (367)
|+|||+++++++++. ..++++.++|++||++.+.. +++++|+++||++++|+||++|..
T Consensus 136 GvSn~~~~~l~~~~~---~~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~~--------------- 194 (275)
T PRK11565 136 GVCNFQIHHLQRLID---ETGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGGK--------------- 194 (275)
T ss_pred eeccCCHHHHHHHHH---hCCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCCc---------------
Confidence 999999999998864 33467899999999998753 499999999999999999997621
Q ss_pred CCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHHhHhc
Q 017732 276 RIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMASE 355 (367)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~ 355 (367)
..+.. +.+.++|+++|+|++|+||||+++++ +++|||+++++|+++|+++++++|+++++++|+++...
T Consensus 195 ~~~~~----------~~l~~ia~~~g~s~aq~aL~w~l~~~-~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 195 GVFDQ----------KVIRDLADKYGKTPAQIVIRWHLDSG-LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred ccccC----------HHHHHHHHHhCCCHHHHHHHHHHcCC-CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 01111 27889999999999999999999997 67999999999999999999999999999999999876
Q ss_pred cCC
Q 017732 356 IKP 358 (367)
Q Consensus 356 ~~~ 358 (367)
.+.
T Consensus 264 ~~~ 266 (275)
T PRK11565 264 KRL 266 (275)
T ss_pred CCc
Confidence 654
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.8e-53 Score=370.24 Aligned_cols=279 Identities=24% Similarity=0.420 Sum_probs=250.1
Q ss_pred ceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHH
Q 017732 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (367)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (367)
|++.++++.|+++|+|.+|+|++.. |+ ++.++....++.|+|.||++||-|+.||++.. |+++|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7899999999999999999999876 33 44578999999999999999999999999988 999999
Q ss_pred HHHhccCCCCCCcEEEEeccCCC----------CCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-CChHHHHHHHH
Q 017732 116 FIKERKQRDPEVEVTVATKFAAL----------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (367)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~g~~----------~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~ 184 (367)
+|+-.+.- ||++.|+||||.. .++.|.++|.+++|+||++|+|||+|+++||+||+ .+.+|+.+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99877643 8999999999962 36789999999999999999999999999999998 78999999999
Q ss_pred HHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCC
Q 017732 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (367)
Q Consensus 185 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~ 264 (367)
.|++.||||++|||||++.+++-+..... .+++.||++.|+++.....++.+++|+++.|..++||||++|-+
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~---- 216 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL---- 216 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc----
Confidence 99999999999999999999998876632 35899999999999988888999999999999999999999833
Q ss_pred CCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCCCCC
Q 017732 265 TPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS-KTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGWRLT 342 (367)
Q Consensus 265 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~-~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~~L~ 342 (367)
|.. .++.+++.+++..+|.++| .|..+++++|++.+|.- .+|+|+.++++|++.++|+++.||
T Consensus 217 -------------F~g--~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~Lt 281 (298)
T COG4989 217 -------------FLG--DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLT 281 (298)
T ss_pred -------------ccC--CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhcccc
Confidence 221 1223455668999999999 79999999999999954 899999999999999999999999
Q ss_pred HHHHHHHHHhH
Q 017732 343 DEEVNELRSMA 353 (367)
Q Consensus 343 ~e~~~~l~~~~ 353 (367)
.++|-+|....
T Consensus 282 RqqWf~Iy~Aa 292 (298)
T COG4989 282 RQQWFEIYTAA 292 (298)
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-48 Score=345.15 Aligned_cols=277 Identities=21% Similarity=0.262 Sum_probs=240.6
Q ss_pred ccceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHH
Q 017732 34 TAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLL 113 (367)
Q Consensus 34 ~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~l 113 (367)
+.|++|.+|+||++||+||||+..++.. +++.+.++....+..|+.+|||+|||++.||.++| |+.+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~l 86 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEGL 86 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHHH
Confidence 4799999999999999999999999886 45566788888888899999999999999999988 9999
Q ss_pred HHHHHhccCCCCCCcEEEEeccCCC------CCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHH
Q 017732 114 GRFIKERKQRDPEVEVTVATKFAAL------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDG 182 (367)
Q Consensus 114 G~al~~~~~~~~R~~~~I~tK~g~~------~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~ 182 (367)
|.++++.+ |+.+||+||+|.. -++++++.+++++++||+||++||+|++++|+.+..+ ..|++.+
T Consensus 87 g~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~ 162 (342)
T KOG1576|consen 87 GLALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPA 162 (342)
T ss_pred HHHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHH
Confidence 99999876 9999999999963 1689999999999999999999999999999987632 5699999
Q ss_pred HHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEec--cccccccCCcchhcHHHHHHHhCCeEEeccccccccc
Q 017732 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (367)
Q Consensus 183 L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l 260 (367)
|++||++||||+|||+.++.+.+.++.+. .....+++- .+|++.+..-. ..+++.+++|++|+.-++++.|+|
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgLL 237 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGLL 237 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHHh
Confidence 99999999999999999999999988653 222456655 77777776543 478888999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCC
Q 017732 261 TGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW 339 (367)
Q Consensus 261 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~ 339 (367)
+..-..+++|.++. ..+...+..++|.+.|+....+|+.|.++.+++ ++++|+++.++++.|+++...
T Consensus 238 t~~gp~~wHPaS~E-----------lk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~ 306 (342)
T KOG1576|consen 238 TNQGPPPWHPASDE-----------LKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFD 306 (342)
T ss_pred hcCCCCCCCCCCHH-----------HHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhc
Confidence 98877777776542 344455677889999999999999999999988 899999999999999998766
Q ss_pred CCCH
Q 017732 340 RLTD 343 (367)
Q Consensus 340 ~L~~ 343 (367)
.|+.
T Consensus 307 ~ls~ 310 (342)
T KOG1576|consen 307 RLSS 310 (342)
T ss_pred cccc
Confidence 7777
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=354.03 Aligned_cols=275 Identities=22% Similarity=0.285 Sum_probs=237.7
Q ss_pred ceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHH
Q 017732 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (367)
Q Consensus 36 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~ 115 (367)
|.||++|+||.++|.||||||++... |. +.+|.+.+.++|++|+|+||||||||..|..|.| |..||+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 78999999999999999999998764 33 3467899999999999999999999999988877 999999
Q ss_pred HHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHHHHHHcC
Q 017732 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLGDAVEQG 190 (367)
Q Consensus 116 al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~~l~~~G 190 (367)
+|++.. |++|+++||+... .--+.+.+++-++++|++|++||+|+|+||...... ..+.++.++++|++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999875 9999999999642 235788999999999999999999999999976521 123789999999999
Q ss_pred CccEEeecCC-CHHHHHHHHHHHHhcCCCeeEeccccccccCCcch-hcHHHHHHHhCCeEEeccccccccccCCCCCCC
Q 017732 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (367)
Q Consensus 191 ~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~ 268 (367)
+||++|+|.| +.+.+.++++. .+++++|++||.+++.... .+.+++|.++|++|+.++|+.+|-|..+.
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v---- 214 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV---- 214 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC----
Confidence 9999999999 56777788775 6799999999999975431 14899999999999999999999775322
Q ss_pred CCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCC--C-CC
Q 017732 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS--KTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW--R-LT 342 (367)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~--~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~--~-L~ 342 (367)
| +++++++.++. .||+..|+||++++|.| ++++|+++++|++||++.++. | ||
T Consensus 215 -----------P----------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lt 273 (391)
T COG1453 215 -----------P----------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLT 273 (391)
T ss_pred -----------C----------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccC
Confidence 1 27888888875 68999999999999999 899999999999999999965 4 99
Q ss_pred HHHHHHHHHhHhccC
Q 017732 343 DEEVNELRSMASEIK 357 (367)
Q Consensus 343 ~e~~~~l~~~~~~~~ 357 (367)
++|+..|.++.+..+
T Consensus 274 e~e~~il~~v~~~~~ 288 (391)
T COG1453 274 EEELQILEKVEEIYR 288 (391)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876544
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.00 E-value=1.4e-05 Score=70.98 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEec
Q 017732 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~ 252 (367)
.++|+.||+++.+|+|..||+|.++..+|+++++.+. +.|..+|++..-++.-+- ++..+|.+++|.+...
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltH 226 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTH 226 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeec
Confidence 4799999999999999999999999999999988865 889999999999887665 5999999999998865
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=90.19 E-value=7.5 Score=36.86 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
++++..+.++.+++.|++.|+.-- |.... .-.+.| +++++.. . ++-|.-++. ..++.+..++ +-
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~----~d~~~v-~~lr~~~----g-~~~l~vD~n---~~~~~~~A~~-~~ 197 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLE----DDIERI-RAIREAA----P-DARLRVDAN---QGWTPEEAVE-LL 197 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChh----hHHHHH-HHHHHhC----C-CCeEEEeCC---CCcCHHHHHH-HH
Confidence 346677788888999999998742 22100 002223 3333322 2 455666763 2345554333 33
Q ss_pred HHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccC
Q 017732 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (367)
Q Consensus 153 ~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (367)
+.|+.+++ .++-.|-. ..-++.+.+|++.-.|. ..|=+-++.+.+.++++. .-.+++|+.....--
T Consensus 198 ~~l~~~~l-----~~iEeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GG 264 (316)
T cd03319 198 RELAELGV-----ELIEQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGG 264 (316)
T ss_pred HHHHhcCC-----CEEECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCC
Confidence 44555544 34444422 12366778888887777 445555788888877654 347788877555321
Q ss_pred CcchhcHHHHHHHhCCeEEeccccccc
Q 017732 232 KPEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 232 ~~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
-..-..+..+|+++|+.++..+-+..+
T Consensus 265 i~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 265 LTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 111224899999999999986555443
No 20
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=88.42 E-value=15 Score=33.76 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
.++..+.++.+++.|++.|-.-- |.... .-.+.| +++++.. .+++.|.-... ..++.+...+-+ +
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~~~----~d~~~v-~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~-~ 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRDPA----RDVAVV-AALREAV----GDDAELRVDAN---RGWTPKQAIRAL-R 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCCHH----HHHHHH-HHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHH-H
Confidence 46666777888899999887532 11100 001223 3444432 23555555542 235555544433 3
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCC
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (367)
.|+.++ +.++..|-.. +-++.+.+|++.-.+. ..|=+-++...+.++++. ..++++|+..+..---
T Consensus 151 ~l~~~~-----i~~iEeP~~~---~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDLG-----LDYVEQPLPA---DDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhcC-----CCEEECCCCc---ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 344444 4445555332 2356777787776665 445555688888877654 3478888876554321
Q ss_pred cchhcHHHHHHHhCCeEEeccccccc
Q 017732 233 PEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 233 ~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
.+-..+...|+++|+.++..+.+..+
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchH
Confidence 11224899999999999987666544
No 21
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.65 E-value=7.4 Score=38.12 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~S 154 (367)
-....++++|++.|++++|||..... +..+....+ +..+.+..-+|-.| ..+--.+...+++-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~dP-Gi~nv~a~~a~~~~ 141 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFDP-GITNVLAAYAAKEL 141 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcCc-chHHHHHHHHHHHh
Confidence 44568999999999999999976544 322333222 34677777777432 33333333333332
Q ss_pred HHhcCCCceeEEEEecCCC
Q 017732 155 LFRLGLSSVELYQLHWAGI 173 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~ 173 (367)
.+ .++++|+|..+-|+.
T Consensus 142 ~~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 142 FD--EIESIDIYVGGLGEH 158 (389)
T ss_pred hc--cccEEEEEEecCCCC
Confidence 22 589999999998765
No 22
>PRK08392 hypothetical protein; Provisional
Probab=85.36 E-value=26 Score=31.14 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 017732 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (367)
Q Consensus 76 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL 155 (367)
...+.++.|.+.|++.|=.+++...... ..=+..+-+ ++....+. +=+|++-.-++..+ +. ....++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~---~~~~~y~~~-i~~l~~~~-~i~il~GiE~~~~~-----~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTP---SKFNAYINE-IRQWGEES-EIVVLAGIEANITP-----NG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccch---hhHHHHHHH-HHHHhhcc-CceEEEeEEeeecC-----Cc-chhHHHHH
Confidence 3567899999999999866655422100 000112211 11111110 11233333332221 11 22333444
Q ss_pred HhcCCCceeEEEEe-cCCCCChHHHHHHHHHHHHcCCccEEeecC--------CCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 156 ~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~--------~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
++ .||+ +.-+| |++....++..+.+.++.+.|.+.-+|=-. ...+.+.++++.+.+.+..+.+|- .+
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~ 159 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY 159 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC
Confidence 53 4666 56668 443333567788888889999877666311 122567778888887887777764 22
Q ss_pred ccccCCcchhcHHHHHHHhCCeEE
Q 017732 227 SLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 227 n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
. .+. . .+++.|++.|+.++
T Consensus 160 ~--~p~--~-~~l~~~~~~G~~~~ 178 (215)
T PRK08392 160 R--VPD--L-EFIRECIKRGIKLT 178 (215)
T ss_pred C--CCC--H-HHHHHHHHcCCEEE
Confidence 1 122 2 48999999998764
No 23
>PRK07945 hypothetical protein; Provisional
Probab=84.17 E-value=41 Score=32.33 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHh---ccCCCCCC-cEEEEeccCCCCCCCCHHHHHHHH
Q 017732 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE---RKQRDPEV-EVTVATKFAALPWRLGRQSVLAAL 151 (367)
Q Consensus 76 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~---~~~~~~R~-~~~I~tK~g~~~~~~~~~~i~~~l 151 (367)
...++++.|.+.|+..|=.+++...... ....+...+-+.++. ...++ ++ +|++---++..+ +.+.+. .
T Consensus 112 ~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~-~~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~----~ 184 (335)
T PRK07945 112 PIEEMARTAAALGHEYCALTDHSPRLTV-ANGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQ----E 184 (335)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcch----h
Confidence 4568899999999998866655322100 000012222222221 11111 22 233333332222 222222 2
Q ss_pred HHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecC------------CCHHHHHHHHHHHHhcCCCe
Q 017732 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 152 ~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~------------~~~~~l~~~~~~~~~~~~~~ 219 (367)
++.|+. .||+ +.-+|+....+.++..+.|.++.+.+++..+|=-. .....+.++.+.+...+..+
T Consensus 185 ~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~l 261 (335)
T PRK07945 185 PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAV 261 (335)
T ss_pred HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEE
Confidence 333443 4666 66779865445567778888888889888887321 11123466777777777777
Q ss_pred eEeccccccccCCcchhcHHHHHHHhCCeEE
Q 017732 220 ASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
.+|--.+. ..+. ..+++.|++.|+.++
T Consensus 262 EINt~~~r---~~P~-~~il~~a~e~G~~vt 288 (335)
T PRK07945 262 EINSRPER---RDPP-TRLLRLALDAGCLFS 288 (335)
T ss_pred EEeCCCCC---CCCh-HHHHHHHHHcCCeEE
Confidence 77643322 2222 249999999999864
No 24
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=83.86 E-value=19 Score=35.86 Aligned_cols=109 Identities=13% Similarity=0.017 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcC-CCceeEEEEecCCCCC-----hHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~-~dyiDl~~lH~p~~~~-----~~~~~~~L 183 (367)
|+.|-+++++...+.+.+-++|.|-+.. ..-.+.++.-+++.-++.. .-.+.++.+|.|+... .+.++++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~---~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al 142 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT---ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAI 142 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch---hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHH
Confidence 7777788877544333455777777642 2222223333333222211 0235678888887632 23344444
Q ss_pred HHH-------HHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeE
Q 017732 184 GDA-------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 184 ~~l-------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
.+. ++.++|--||-++.....+.++.+.++..|+++.+
T Consensus 143 ~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 143 IEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 332 23566878876665444455555556666765444
No 25
>PRK13796 GTPase YqeH; Provisional
Probab=83.69 E-value=25 Score=34.21 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=88.8
Q ss_pred ccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCC---CCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCC
Q 017732 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (367)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---i~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (367)
..+|-=|.++-. ++......++.++..++++..-+.- +-.+|..+.-+.- ...+.+....
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~~------ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVGN------ 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhCC------
Confidence 345555655533 2221122345566777777766555 5567866644331 3334443321
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 205 (367)
+.-++|.+|+=-.+.....+.+++.++.-.+.++....|++++..-.....+++++.+.++.+.+.+-.+|.+|..-..+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 45788999983322233455666666666777776556788877655567889999998888888889999999976665
Q ss_pred HHH
Q 017732 206 RNA 208 (367)
Q Consensus 206 ~~~ 208 (367)
-..
T Consensus 177 iN~ 179 (365)
T PRK13796 177 INR 179 (365)
T ss_pred HHH
Confidence 443
No 26
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=83.35 E-value=35 Score=31.63 Aligned_cols=62 Identities=8% Similarity=0.143 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccC
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g 136 (367)
+.+|.+...+.+++.++.|++-|-..-.-|-+.+....+=++++..+.+... +++-|..-++
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----~~~~vi~gv~ 74 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----GRVPVIAGVG 74 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----CCCeEEEecC
Confidence 4578899999999999999998866555554433222222344544554432 3444444444
No 27
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=83.03 E-value=42 Score=32.24 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~-~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
.++..+.++.+.+.|++.|-.--..+.... .+. .-.+.| +++++.- .+++.|..... ..++.+...+-
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-~~~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~~~-- 208 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGG-EDLREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAIRL-- 208 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcch-HHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHHH--
Confidence 466777778888999999864221111000 000 002333 3344332 24566666663 24555544432
Q ss_pred HHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccC
Q 017732 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (367)
Q Consensus 153 ~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (367)
+++|. ..++.++..|-.. +-++.+.+|++.-.|. ..|=+.++++.+.++++. ..++++|+...-.--
T Consensus 209 --~~~l~--~~~i~~iEqP~~~---~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GG 276 (357)
T cd03316 209 --ARALE--EYDLFWFEEPVPP---DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVGG 276 (357)
T ss_pred --HHHhC--ccCCCeEcCCCCc---cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccCC
Confidence 23342 2245556665432 2466777888876665 444455688888887654 247888887555432
Q ss_pred CcchhcHHHHHHHhCCeEEecc
Q 017732 232 KPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 232 ~~~~~~~~~~~~~~gi~via~~ 253 (367)
-.+-..+...|+++|+.++..+
T Consensus 277 i~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 277 ITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHHHHcCCeEeccC
Confidence 1112258999999999988754
No 28
>PRK08609 hypothetical protein; Provisional
Probab=82.63 E-value=52 Score=34.12 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=88.9
Q ss_pred HHHHHHHHHHCCCCeEeCCCCcCCCC-CCCCCchHHHHHHHH---HhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 77 AKAAFDTSLDNGITFFDTAEVYGSRA-SFGAINSETLLGRFI---KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 77 ~~~~l~~A~~~Gi~~~DTA~~Yg~g~-s~~~~~sE~~lG~al---~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
..++++.|.+.|+++|=.++++.... +.+ .+...+-..+ +.....++.=+|++-.-+... ++....-.+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~--~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~-----~~g~~d~~~ 423 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANG--LTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL-----PDGSLDYDD 423 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCC--CCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec-----CCcchhhcH
Confidence 34589999999999998887753210 000 0133222222 221111111134443333322 222223333
Q ss_pred HHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecC------C--CHHHHHHHHHHHHhcCCCeeEecc
Q 017732 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLASNQV 224 (367)
Q Consensus 153 ~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~------~--~~~~l~~~~~~~~~~~~~~~~~q~ 224 (367)
..|+. .||+ +.-+|++-..+.+++++.+.++.+.|.+.-||=-. + -...++++.+.+...|..+.+|-
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa- 499 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNA- 499 (570)
T ss_pred HHHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcC-
Confidence 45554 4666 67778764445678889999999999888776332 1 23556777777776665555543
Q ss_pred ccccccCCcchhcHHHHHHHhCCeEE
Q 017732 225 NYSLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 225 ~~n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
+.+.... ...++..|.+.|+.++
T Consensus 500 --~~~r~~~-~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 500 --NPNRLDL-SAEHLKKAQEAGVKLA 522 (570)
T ss_pred --CccccCc-cHHHHHHHHHcCCEEE
Confidence 3332211 2248999999999754
No 29
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=82.25 E-value=47 Score=31.66 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=75.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHH
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~ 149 (367)
...+.++..++++.+.+.|+..|-- .| |+......=++++.. +++... -.++.|.|-.. . +.+
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~---tG-GEPllr~dl~~li~~-i~~~~~---l~~i~itTNG~----l-----l~~ 105 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRL---TG-GEPLVRRGCDQLVAR-LGKLPG---LEELSLTTNGS----R-----LAR 105 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE---EC-cCCCccccHHHHHHH-HHhCCC---CceEEEEeChh----H-----HHH
Confidence 3467789999999999999988853 23 432111111233322 232210 12566666541 1 222
Q ss_pred HHHHHHHhcCCCceeEEEEecCCC---------CChHHHHHHHHHHHHcCC--c--cEEeecCCCHHHHHHHHHHHHhcC
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKRG 216 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~--i--r~iGvS~~~~~~l~~~~~~~~~~~ 216 (367)
.-+.|+..|++++-+ -|+..++ ...+.+++.++.+++.|. | ..+.+...+.+++.++++.+...+
T Consensus 106 -~~~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 334566677776653 4444432 125678888888888875 2 234444567778888888777666
Q ss_pred CCe
Q 017732 217 IPL 219 (367)
Q Consensus 217 ~~~ 219 (367)
+.+
T Consensus 184 i~~ 186 (329)
T PRK13361 184 LDI 186 (329)
T ss_pred CeE
Confidence 543
No 30
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.23 E-value=3.3 Score=39.26 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=87.9
Q ss_pred cceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHCCCC--eEeCCCCcCCCCCCCCCchHHH
Q 017732 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAINSETL 112 (367)
Q Consensus 35 ~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~--~~DTA~~Yg~g~s~~~~~sE~~ 112 (367)
+|.+..++ .|..|-.+|+|. +|.. .+++|-..|.+ .||+++.-. |+
T Consensus 173 pLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~~kk----------ee- 220 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSSKKK----------EE- 220 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCchhH----------HH-
Confidence 67777888 588899999988 5653 46777777776 566653111 43
Q ss_pred HHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCc
Q 017732 113 LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (367)
Q Consensus 113 lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~i 192 (367)
+++... -|.++++||- ++ +.+++..++. .+.|.+--+ ....+-..++-||..|++
T Consensus 221 ---a~~~LG----Ad~fv~~~~d--------~d-~~~~~~~~~d-g~~~~v~~~--------a~~~~~~~~~~lk~~Gt~ 275 (360)
T KOG0023|consen 221 ---AIKSLG----ADVFVDSTED--------PD-IMKAIMKTTD-GGIDTVSNL--------AEHALEPLLGLLKVNGTL 275 (360)
T ss_pred ---HHHhcC----cceeEEecCC--------HH-HHHHHHHhhc-Ccceeeeec--------cccchHHHHHHhhcCCEE
Confidence 456555 2444454443 33 4444555443 333322222 122234566778899999
Q ss_pred cEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeE
Q 017732 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (367)
Q Consensus 193 r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~v 249 (367)
-.+|+-... ..+.-.. .-+-...+-.+..--..+.++++++|.+++|..
T Consensus 276 V~vg~p~~~-~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 276 VLVGLPEKP-LKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred EEEeCcCCc-ccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 999998862 2222111 012333445555555556668999999998764
No 31
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=80.98 E-value=52 Score=31.29 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=89.9
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHH
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~ 149 (367)
...+.++..++++.+.+.|++.|.-. | |+......-.+++- .+++.. .-.++.|+|-.. . +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~-~i~~~~---~~~~i~itTNG~----l-----l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIA-ALAALP---GIRDLALTTNGY----L-----LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHH-HHHhcC---CCceEEEEcCch----h-----HHH
Confidence 45677899999999999999988632 3 43211111122332 233321 023677777641 1 112
Q ss_pred HHHHHHHhcCCCceeEEEEecCCC---------CChHHHHHHHHHHHHcCC----ccEEeecCCCHHHHHHHHHHHHhcC
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~ 216 (367)
.+ +.|+..|++.+- +-+|..++ ...++++++++.+++.|. |..+.+...+.+++.++.+.++..+
T Consensus 110 ~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 RA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred HH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 22 335555655443 33344332 236889999999999885 3344455667788888888887666
Q ss_pred CCeeEeccccccccCCc--------chhcHHHHHHHhCCeEE
Q 017732 217 IPLASNQVNYSLIYRKP--------EENGVKAACDELGITLI 250 (367)
Q Consensus 217 ~~~~~~q~~~n~~~~~~--------~~~~~~~~~~~~gi~vi 250 (367)
+. +.-++|.++.... ...++++..++.|+.+.
T Consensus 188 v~--v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 188 IQ--LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred Ce--EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 43 3334444433221 11247777777765543
No 32
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=80.89 E-value=16 Score=35.66 Aligned_cols=144 Identities=14% Similarity=0.183 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHCCCC-eEeCCCCcCCCCCCCCCchHHHHHHHH-HhccCCCCCCcEEEEe--------ccCCCCCCCC
Q 017732 74 MKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFI-KERKQRDPEVEVTVAT--------KFAALPWRLG 143 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al-~~~~~~~~R~~~~I~t--------K~g~~~~~~~ 143 (367)
.++=.+=++.|++.|-. ..|-+. .|+ -..+-+.+ +..+ +-|-| +......+.+
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLSt-Ggd---------l~~iR~~il~~s~-------vpvGTVPiYqa~~~~~~~~~~mt 138 (423)
T TIGR00190 76 IEEEVEKALIAIKYGADTVMDLST-GGD---------LDEIRKAILDAVP-------VPVGTVPIYQAAEKVHGAVEDMD 138 (423)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccC-CCC---------HHHHHHHHHHcCC-------CCccCccHHHHHHHhcCChhhCC
Confidence 34444557999999987 446543 444 44444443 3222 11111 0000113578
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEec
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 223 (367)
.+.+.+.|++..+ |-+|.+-+|.- -+.+.++.++++| |..|+-+....-+..++..-
T Consensus 139 ~d~~~~~ie~qa~----dGVDfmTiH~G------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~----------- 195 (423)
T TIGR00190 139 EDDMFRAIEKQAK----DGVDFMTIHAG------VLLEYVERLKRSG--RITGIVSRGGAILAAWMLHH----------- 195 (423)
T ss_pred HHHHHHHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhCC--CccCeecCcHHHHHHHHHHc-----------
Confidence 8888888888776 56788899973 3678899999999 56677777666666665431
Q ss_pred cccccccCCcchhcHHHHHHHhCCeEEeccccccccccCC
Q 017732 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGK 263 (367)
Q Consensus 224 ~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~ 263 (367)
-.=|++..... .+++.|++++|.+ .||.|+--|.
T Consensus 196 ~~ENPlye~fD--~lLeI~~~yDVtl----SLGDglRPG~ 229 (423)
T TIGR00190 196 HKENPLYKNFD--YILEIAKEYDVTL----SLGDGLRPGC 229 (423)
T ss_pred CCcCchHHHHH--HHHHHHHHhCeee----eccCCcCCCc
Confidence 13355554433 4999999999997 5777765443
No 33
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=80.24 E-value=29 Score=29.29 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=57.7
Q ss_pred EEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCc----chhcHHHH
Q 017732 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EENGVKAA 241 (367)
Q Consensus 166 ~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~~~~~~~ 241 (367)
+++..|.....+++++...+=-++.-|++|=|.+-+.+...++++..+.. .++.++ -|+...... .+.++-+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvV--thh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVV--THHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEE--EeecccccCCceecCHHHHHH
Confidence 45667776667888887766667777899988877777766776654322 334443 444433222 22358889
Q ss_pred HHHhCCeEEeccccccc
Q 017732 242 CDELGITLIAYCPIAQG 258 (367)
Q Consensus 242 ~~~~gi~via~~pl~~G 258 (367)
.+++|..|+.-|-...|
T Consensus 79 L~erGa~v~~~sHalSg 95 (186)
T COG1751 79 LKERGAKVLTQSHALSG 95 (186)
T ss_pred HHHcCceeeeehhhhhc
Confidence 99999999875444433
No 34
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=79.09 E-value=48 Score=29.76 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCC-CCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTA-EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA-~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~ 150 (367)
.+.++..++++.-.+.||..|+.. +..+.. ..+.+.+..+... . ..+.+.+ ....+.++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~-------~~~~v~~~~~~~~----~--~~~~~~~-----~~~~~~i~~~ 72 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED-------DFEQVRRLREALP----N--ARLQALC-----RANEEDIERA 72 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH-------HHHHHHHHHHHHH----S--SEEEEEE-----ESCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH-------HHHHhhhhhhhhc----c--cccceee-----eehHHHHHHH
Confidence 455888889998889999999998 333321 1344555554443 2 2333333 2346666666
Q ss_pred HHHHHHhcCCCceeEEEEecCCC------CC----hHHHHHHHHHHHHcCCccEEeec---CCCHHHHHHHHHHHHhcCC
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~------~~----~~~~~~~L~~l~~~G~ir~iGvS---~~~~~~l~~~~~~~~~~~~ 217 (367)
++.. +..+.|.+.++.--++-. .+ .+.+.+.++..++.|....+++- .++++.+.++.+.+...+.
T Consensus 73 ~~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 73 VEAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred HHhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC
Confidence 6533 568888887765322200 11 34556667778899988888874 4577777777777666554
Q ss_pred CeeEeccccccccCCcchhcHHHHHHHh----CCeEEeccccccc
Q 017732 218 PLASNQVNYSLIYRKPEENGVKAACDEL----GITLIAYCPIAQG 258 (367)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~~~~~~~~~----gi~via~~pl~~G 258 (367)
....+-=-+..+.+... .+++...++. .+++.++.-+|-+
T Consensus 152 ~~i~l~Dt~G~~~P~~v-~~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 152 DIIYLADTVGIMTPEDV-AELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp SEEEEEETTS-S-HHHH-HHHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred eEEEeeCccCCcCHHHH-HHHHHHHHHhccCCeEEEEecCCccch
Confidence 32222112233333221 2466666653 3566666666543
No 35
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=78.29 E-value=60 Score=30.42 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHHHHHHCC-CCeEeCCCCcCCC
Q 017732 70 DDRKMKAAKAAFDTSLDNG-ITFFDTAEVYGSR 101 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~G-i~~~DTA~~Yg~g 101 (367)
+.+|.+...+.+++.++.| ++-|=..-..|-+
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~ 48 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGEN 48 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCccccc
Confidence 3577788889999999999 8877555444443
No 36
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=77.39 E-value=83 Score=31.60 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC---C-ceeEEEEecCCCCC-----hHHH
Q 017732 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---S-SVELYQLHWAGIWG-----NEGF 179 (367)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~---d-yiDl~~lH~p~~~~-----~~~~ 179 (367)
|+-|-++|+....++| .+=++|.|-+.. ..--+.+..-+++.-++++- + .+.++.+|.|+... .+..
T Consensus 71 ~~~L~~~I~~~~~~~~~p~~I~V~tTC~~---eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a 147 (454)
T cd01973 71 AKRVEEGVLVLARRYPDLRVIPIITTCST---EIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEA 147 (454)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchH---hhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHH
Confidence 7788888887554432 244778877742 22222333333332222211 1 46889999988743 2233
Q ss_pred HHHHHH-HHH----cCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 180 IDGLGD-AVE----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 180 ~~~L~~-l~~----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
++++.+ +.. +++|--||-.+ ++..++++.+.++..|+.+.
T Consensus 148 ~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 148 VRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred HHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEE
Confidence 333322 222 46677786443 45667777776777776543
No 37
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=77.31 E-value=45 Score=31.07 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=23.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCC
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSR 101 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g 101 (367)
+.+|.+...+.+++.++.|++-|=.+-.-|-+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~ 48 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEF 48 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTG
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCccc
Confidence 45778999999999999999977555444433
No 38
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=76.79 E-value=25 Score=34.50 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCCCC-eEeCCCCcCCCCCCCCCchHHHHHHHH-HhccCCC---CCCcEEE--EeccCCCCCCCCHHH
Q 017732 74 MKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFI-KERKQRD---PEVEVTV--ATKFAALPWRLGRQS 146 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al-~~~~~~~---~R~~~~I--~tK~g~~~~~~~~~~ 146 (367)
.++=.+=++.|++.|-. ..|-+. .|+ -..+-+.+ +..+... |=-+.++ ..|-+ ...+.+.+.
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLSt-ggd---------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~-~~~~mt~d~ 144 (431)
T PRK13352 76 IEEELEKAKVAVKYGADTIMDLST-GGD---------LDEIRRAIIEASPVPVGTVPIYQAAVEAARKYG-SVVDMTEDD 144 (431)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccC-CCC---------HHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCC-ChhhCCHHH
Confidence 34444558999999987 446542 444 33344433 3322110 0000000 00111 123578888
Q ss_pred HHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 147 i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
+...|++..+ |-+|.+-+|.- -+.+.++.++++| |..|+-+....-+..++..- ..=
T Consensus 145 ~~~~ie~qa~----~GVDfmTiHcG------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n-----------~~E 201 (431)
T PRK13352 145 LFDVIEKQAK----DGVDFMTIHCG------VTRETLERLKKSG--RIMGIVSRGGSFLAAWMLHN-----------NKE 201 (431)
T ss_pred HHHHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhcC--CccCeecCCHHHHHHHHHHc-----------CCc
Confidence 8888888776 66788999983 2578899999998 56677777666666665431 133
Q ss_pred ccccCCcchhcHHHHHHHhCCeEEeccccccccccCCC
Q 017732 227 SLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (367)
Q Consensus 227 n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~ 264 (367)
|++..... .+++.|++++|.+ .||.|+-.|..
T Consensus 202 NPlye~fD--~lLeI~~~yDVtl----SLGDglRPG~i 233 (431)
T PRK13352 202 NPLYEHFD--YLLEILKEYDVTL----SLGDGLRPGCI 233 (431)
T ss_pred CchHHHHH--HHHHHHHHhCeee----eccCCcCCCcc
Confidence 55554433 4999999999997 57777655443
No 39
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=76.11 E-value=92 Score=31.82 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
++.|-+++++...+.+.+-++|.|-+- .+-|-..++...+.++.+.++++.++.|+... .+.+++.+.
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC~-------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSCT-------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCh-------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 777778887654333344566665552 44454555555666665568899999987622 222333322
Q ss_pred H-H----------HHcCCccEEeecCC---CHHHHHHHHHHHHhcCCCeeE
Q 017732 185 D-A----------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 185 ~-l----------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~ 221 (367)
+ + .++++|--||.++. .+..+.++...++..|+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 2 1 13456888898763 456667777777777765443
No 40
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=75.88 E-value=60 Score=30.11 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=24.8
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCC
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSR 101 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g 101 (367)
+.+|.+...+.+++.++.|++-+-..-..|-+
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~ 47 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGES 47 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 45788999999999999999988655444443
No 41
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=75.15 E-value=91 Score=30.92 Aligned_cols=108 Identities=9% Similarity=0.058 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcC-CCceeEEEEecCCCCC-----hHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~-~dyiDl~~lH~p~~~~-----~~~~~~~L 183 (367)
|+.|-+++++...+++.+=++|.|-+.. ..-.+.+..-+++.-++.. ...+.++.+|.|+... .+..+++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~---eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLT---ETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcc---cccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 7777777776543333466788877743 2222333333333323311 0146788899988632 23333333
Q ss_pred HH-H--------HHcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 184 GD-A--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 184 ~~-l--------~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
.+ + +++++|--||-++.++..+.++.+..+..|+.+.
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~ 188 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPI 188 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 32 2 2356688887666667777888777777776653
No 42
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=74.09 E-value=98 Score=31.14 Aligned_cols=108 Identities=8% Similarity=0.052 Sum_probs=59.1
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCC----ceeEEEEecCCCCC-----hHHH
Q 017732 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQLHWAGIWG-----NEGF 179 (367)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~d----yiDl~~lH~p~~~~-----~~~~ 179 (367)
|+-|-++|++...+++ .+=++|.|-+.. ..--+.|..-+++.-++|.-+ .+.++.+|.|+... .+..
T Consensus 74 ~~kL~~aI~~~~~~~~~p~~I~V~ttC~~---eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~G~~~a 150 (457)
T TIGR02932 74 AKRIEEGVLTLARRYPNLRVIPIITTCST---ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVTGYAEC 150 (457)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCchH---HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHHHHHHH
Confidence 8888888887554332 245777777642 222333444443332222211 46889999998742 3344
Q ss_pred HHHHHHHH------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeE
Q 017732 180 IDGLGDAV------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 180 ~~~L~~l~------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
+++|.+.. .+++|--||-.+ ++..++++.+.++..|+.+.+
T Consensus 151 ~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 151 VKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred HHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 44444322 246677776433 355666666667666765444
No 43
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=73.63 E-value=41 Score=31.02 Aligned_cols=104 Identities=14% Similarity=0.032 Sum_probs=67.3
Q ss_pred HHHHHHHcCCccEEeec-CC-CHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEecccccccc
Q 017732 182 GLGDAVEQGLVKAVGVS-NY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 182 ~L~~l~~~G~ir~iGvS-~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~ 259 (367)
.|.+-.++|+. -+|+- .. ++. +.++ +...|..+.++-+++.+++..... .++..|+..|+..+.+-|-..
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~-~~e~---~a~~G~D~v~iD~EHg~~~~~~~~-~~i~a~~~~g~~~lVRvp~~~-- 80 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPI-TTEV---LGLAGFDWLVLDGEHAPNDVSTFI-PQLMALKGSASAPVVRVPTNE-- 80 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcH-HHHH---HHhcCCCEEEEccccCCCCHHHHH-HHHHHHhhcCCCcEEECCCCC--
Confidence 35555556775 45542 22 333 3333 334457788888899998876443 478888889998888765542
Q ss_pred ccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhC
Q 017732 260 LTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALG 338 (367)
Q Consensus 260 l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~ 338 (367)
...++.+|..+.. .++|-.++.+|+++.+++..
T Consensus 81 ----------------------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~k 114 (256)
T PRK10558 81 ----------------------------------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTR 114 (256)
T ss_pred ----------------------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcC
Confidence 2344566666643 67888888888888877776
Q ss_pred C
Q 017732 339 W 339 (367)
Q Consensus 339 ~ 339 (367)
+
T Consensus 115 y 115 (256)
T PRK10558 115 Y 115 (256)
T ss_pred C
Confidence 6
No 44
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=73.24 E-value=67 Score=32.02 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC-CceeEEEEecCCCCC-----hHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~-dyiDl~~lH~p~~~~-----~~~~~~~L 183 (367)
|+.|-+++++...+.+.+=++|.|-+-. ..-.+.+..-+++.-++... ..+.++.++.|+... .+.++++|
T Consensus 70 ~~~L~~ai~~~~~~~~p~~I~v~ttC~~---~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al 146 (435)
T cd01974 70 QNNLIDGLKNAYAVYKPDMIAVSTTCMA---EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGI 146 (435)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCchH---hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHH
Confidence 7788888877554333455777777632 22233333333332223211 147899999887632 23344444
Q ss_pred HH-HH-------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 184 GD-AV-------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 184 ~~-l~-------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
.+ +. +.++|--||-.+...+.+.++.+.++..|+.+.
T Consensus 147 ~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 147 LTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred HHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 32 22 233455555222222225555555666676553
No 45
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=72.05 E-value=90 Score=29.81 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 205 (367)
++.+.++.|....|| ...+.+.+++..+.+|. ++.+ ..+...+..+..+.++.+..+| +..|-++..++..+
T Consensus 23 ~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 678989999754333 45678889999999984 4443 3444445566678899999876 88898988887777
Q ss_pred HHHHHHHHhcCCCeeEe
Q 017732 206 RNAYEKLKKRGIPLASN 222 (367)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (367)
...++.+...++|+..+
T Consensus 95 ~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 95 CPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 77777777777765444
No 46
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=71.87 E-value=1.2e+02 Score=31.09 Aligned_cols=140 Identities=10% Similarity=0.141 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC-CceeEEEEecCCCCC-----hHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~-dyiDl~~lH~p~~~~-----~~~~~~~L 183 (367)
|+.|-+.++....+.+.+=++|.|-|. ++-|-..++...+.++. .-++++.+|.|.... .+.+++.+
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~-------~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCT-------SSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCc-------hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 666666666543333345566666653 22333333333333331 236899999997632 12233333
Q ss_pred HHH---------------HHcCCccEEeecC---CCHHHHHHHHHHHHhcCCCeeEe--------------ccccccccC
Q 017732 184 GDA---------------VEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASN--------------QVNYSLIYR 231 (367)
Q Consensus 184 ~~l---------------~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~~--------------q~~~n~~~~ 231 (367)
.+. +.+++|--||.++ +++..+.++...++..|+.+.++ .-.+|+...
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~ 222 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPY 222 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEec
Confidence 221 1245688888764 23456666666666666554322 122333221
Q ss_pred CcchhcHHHHHH-HhCCeEEeccccc
Q 017732 232 KPEENGVKAACD-ELGITLIAYCPIA 256 (367)
Q Consensus 232 ~~~~~~~~~~~~-~~gi~via~~pl~ 256 (367)
......+.++.+ +.|+.++...|+|
T Consensus 223 ~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 223 REVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred hhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 111112344443 4588887766765
No 47
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.21 E-value=23 Score=32.25 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCC-ChHHHHHHHHHHHHcC-CccEEeecCCCHHHHHHHHHHHHhcCCC
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~-~~~~~~~~L~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 218 (367)
.++.+...+-+ +.|.++|+++|++-..-.+... ...+.++.++++++.+ .++...++....+.++.+.+. +
T Consensus 15 ~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~----g-- 87 (265)
T cd03174 15 TFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA----G-- 87 (265)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC----C--
Confidence 45666555544 4477899999988766443211 1345678888888888 677767776555555555432 2
Q ss_pred eeEecccccccc--------CCcc-----hhcHHHHHHHhCCeEEecc
Q 017732 219 LASNQVNYSLIY--------RKPE-----ENGVKAACDELGITLIAYC 253 (367)
Q Consensus 219 ~~~~q~~~n~~~--------~~~~-----~~~~~~~~~~~gi~via~~ 253 (367)
++.+++.+..-+ +..+ -...++.+++.|+.+...-
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444444443321 1110 0146778888888876543
No 48
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=71.10 E-value=79 Score=29.21 Aligned_cols=101 Identities=15% Similarity=-0.000 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe
Q 017732 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (367)
Q Consensus 143 ~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (367)
+.+.+.+...+.. .-|-|+||+-.- .+.....+.+...++.+++.-.+ -+-+-+++++.++.+++.++ | .+-+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~-~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G-~~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG-TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--G-PPLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC-CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--C-CCEEE
Confidence 3555555554443 678999999642 11112234455566666554232 37888999999999987632 2 23333
Q ss_pred ccccccccCCcchhcHHHHHHHhCCeEEecc
Q 017732 223 QVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 223 q~~~n~~~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
-+ |......+ .+++.+++.|+.++...
T Consensus 97 sI--s~~~~~~~--~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 97 SV--SAEGEKLE--VVLPLVKKYNAPVVALT 123 (261)
T ss_pred eC--CCCCccCH--HHHHHHHHhCCCEEEEe
Confidence 22 22221111 48999999999999754
No 49
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=71.06 E-value=1.1e+02 Score=30.66 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=56.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcC-CCceeEEEEecCCCCC-----hHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~-~dyiDl~~lH~p~~~~-----~~~~~~~L 183 (367)
|+.|-+++++...+++.+=++|.|-+-. ..-.+.+..-+++.-++.. ..-+.++.++.|+... .+..+++|
T Consensus 77 ~~~L~~aI~~~~~~~~P~~I~V~ttC~~---eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al 153 (455)
T PRK14476 77 DENVEEAILNICKKAKPKIIGLCTTGLT---ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAI 153 (455)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCcchH---hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 7777788877543332455667766521 1112223333322222221 1135788889988632 22333333
Q ss_pred HH-HH--------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCe
Q 017732 184 GD-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 184 ~~-l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.+ +. ++++|--||-+++.+..+.++.+.++..|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 154 VEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred HHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 22 21 34568888766555556666666666667654
No 50
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=70.80 E-value=1.2e+02 Score=30.52 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC------hHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~------~~~~~~~ 182 (367)
|+-|-+++++...+++. +-|+|.|-+.. ..-.+.+..-+++.-++++ +.++.+|.|+..+ .....++
T Consensus 116 e~kL~~aI~e~~~~~~P~~~I~V~tTC~~---~lIGDDi~av~~~~~~~~~---~pVi~v~t~gf~G~s~~~G~~~a~~a 189 (466)
T TIGR01282 116 DKKLKKAIDEIEELFPLNKGISIQSECPV---GLIGDDIEAVAKKASKELG---KPVVPVRCEGFRGVSQSLGHHIANDA 189 (466)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEeCCChH---HHhccCHHHHHHHHhhhcC---CcEEEEeCCCcCCchhhHHHHHHHHH
Confidence 77778888776544433 56888877742 1222233333333333443 5789999988632 1222333
Q ss_pred HHH-HHH----------cCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 183 LGD-AVE----------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 183 L~~-l~~----------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
+.+ +.. .++|--||-.++. ..+.++...++..|+++.
T Consensus 190 i~~~l~~~~~~~~~~~~~~~VNiiG~~~~~-gd~~eik~lL~~~Gi~v~ 237 (466)
T TIGR01282 190 VRDWVLGKGDKEKFEPTPYDVAIIGDYNIG-GDAWESRILLEEIGLRVV 237 (466)
T ss_pred HHHHhhccccccccCCCCCeEEEEecCCCc-ccHHHHHHHHHHcCCeEE
Confidence 332 221 3578888855542 334444444555665543
No 51
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=69.35 E-value=1e+02 Score=29.11 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhc
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~ 120 (367)
+.+|.+...+++++.++.|++-|=..-..|-+.+....+=++++-.+.+..
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~ 74 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV 74 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh
Confidence 457889999999999999999776555555443322222234454555443
No 52
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.32 E-value=68 Score=29.35 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=34.1
Q ss_pred cHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017732 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (367)
Q Consensus 237 ~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 302 (367)
..+++|+..|...+...|...|.. .-..+.+++..+.++.+.++|+++|+
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL----------------TPPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 377899999999987766433210 01234556677777888888888876
No 53
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=69.01 E-value=1.4e+02 Score=30.30 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHH----cCCccEEeecC--CCHHHHHHHHHHHHhc
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE----QGLVKAVGVSN--YSEKRLRNAYEKLKKR 215 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~----~G~ir~iGvS~--~~~~~l~~~~~~~~~~ 215 (367)
.+.+.|.+.++. +.+.|...+-|+.=..|...+.+.+.+.++.+++ .|.++.++|+- .+.+++.++.+.
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lkea---- 189 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEA---- 189 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHc----
Confidence 578888888875 5678877765542233333567777777777776 57787777653 466777666443
Q ss_pred CC-CeeEecccccc-----ccCC-----c-chhcHHHHHHHhCCeEEe
Q 017732 216 GI-PLASNQVNYSL-----IYRK-----P-EENGVKAACDELGITLIA 251 (367)
Q Consensus 216 ~~-~~~~~q~~~n~-----~~~~-----~-~~~~~~~~~~~~gi~via 251 (367)
|+ .+.++|--||. +++. . ..-+.++.+++.|+.-+.
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg 237 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVG 237 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeC
Confidence 33 35556655542 2221 1 112477888888987443
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=68.80 E-value=31 Score=30.35 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=93.0
Q ss_pred HHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH--------
Q 017732 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA-------- 150 (367)
Q Consensus 79 ~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~-------- 150 (367)
++|..-++-|-+.+|-.- |+| .+-+.|++.. ++. -.| -..+.+.+.++
T Consensus 5 ~~I~~~I~pgsrVLDLGC--GdG----------~LL~~L~~~k------~v~---g~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGC--GDG----------ELLAYLKDEK------QVD---GYG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecCC--Cch----------HHHHHHHHhc------CCe---EEE---EecCHHHHHHHHHcCCCEE
Confidence 456667788889998642 222 2335565532 111 011 23455555555
Q ss_pred ---HHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccc
Q 017732 151 ---LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (367)
Q Consensus 151 ---l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (367)
+++.|..+.-+.+|.+.+..-=. ......+.|+++..-|+---+++.||..+..+.-+- ..|-.|..-.++|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ-~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~---~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQ-AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL---LRGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHH-hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH---hcCCCCCCCCCCCc
Confidence 44555566666666666653211 122334457777777887778999998777654432 12334666778888
Q ss_pred cccCCcch----hcHHHHHHHhCCeEEeccccccc
Q 017732 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 228 ~~~~~~~~----~~~~~~~~~~gi~via~~pl~~G 258 (367)
-++...-+ .++.++|++.|+.|.-..++..+
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 77754322 36889999999999998888875
No 55
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=68.62 E-value=1.4e+02 Score=30.47 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
|+.|-+++++...+.+.+-|+|.|-|. .+-|-..++...+.++.+ ++++.++.|+... .+.+++.+.
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC~-------seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSCT-------AELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcH-------HHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 667777777654333234456666552 444445555555556543 5799999887622 223333322
Q ss_pred H-HH-----------HcCCccEEeecC---CCHHHHHHHHHHHHhcCCCeeE
Q 017732 185 D-AV-----------EQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 185 ~-l~-----------~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
+ +. +.++|--||.++ +.+.++.++...++..|+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~ 193 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNV 193 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEE
Confidence 2 11 234577888764 2456777777777777765543
No 56
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=68.62 E-value=1.3e+02 Score=30.15 Aligned_cols=104 Identities=19% Similarity=0.167 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC------hHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~------~~~~~~~ 182 (367)
|+-|-++|+....++++ +-|+|.|-+.. ..-.+.+..-+++.-++++ +.++.+|.|+... .....++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 77788888775544434 56777777642 2223334444444334444 6899999987632 1222332
Q ss_pred -HHHHH--------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 183 -L~~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
++.+. +.++|--||-.++ +..++++.+.++..|+++.
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEE
Confidence 33343 2467888886554 3455556666666776554
No 57
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=67.41 E-value=1.1e+02 Score=28.52 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCC
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 100 (367)
+.+|.+...+.+++.++.|++-+=+.-..|-
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE 44 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGE 44 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcc
Confidence 4577888888999999999887654444443
No 58
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=66.94 E-value=74 Score=29.53 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=66.6
Q ss_pred HHHHHHcCCccEEee-cCC-CHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccc
Q 017732 183 LGDAVEQGLVKAVGV-SNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (367)
Q Consensus 183 L~~l~~~G~ir~iGv-S~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l 260 (367)
|.+..++|+.- +|+ ... ++... ++ +...|..+.++-.++.+++..... .++..++..|+..+..-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~-E~---~a~~GfD~v~iD~EHg~~~~~~l~-~~i~a~~~~g~~~lVRvp~~~--- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMA-EI---AATSGYDWLLIDGEHAPNTIQDLY-HQLQAIAPYASQPVIRPVEGS--- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHH-HH---HHHcCCCEEEEccccCCCCHHHHH-HHHHHHHhcCCCeEEECCCCC---
Confidence 44455567753 443 232 43333 33 233456788888899998876443 477888888888777655332
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCC
Q 017732 261 TGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW 339 (367)
Q Consensus 261 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~ 339 (367)
...++.+|..+.- .++|-..+.++.++.+++..+
T Consensus 80 ---------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 ---------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred ---------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 2345667777643 677888888888888888776
Q ss_pred C
Q 017732 340 R 340 (367)
Q Consensus 340 ~ 340 (367)
|
T Consensus 115 p 115 (267)
T PRK10128 115 P 115 (267)
T ss_pred C
Confidence 3
No 59
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=66.14 E-value=64 Score=31.50 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=75.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
|+.|-+++++...+.+.+=++|.|-+.+ ..-.+.+..-+++.-++.+. .++.+|.+.... .+.++.+|.
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~---~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVP---EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHH---HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCH---HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 7777777765432222467888887742 11122233333333344543 888889877622 345555555
Q ss_pred HHH-H------cCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe--------------ccccccccCCcchhcHHHHHH
Q 017732 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--------------QVNYSLIYRKPEENGVKAACD 243 (367)
Q Consensus 185 ~l~-~------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~--------------q~~~n~~~~~~~~~~~~~~~~ 243 (367)
+.. + .+.|--+|.++.....+.++.+..+..|+.+..+ +..+|+.........+.++.+
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLE 212 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHH
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHH
Confidence 444 2 3677788999887677777777777777543222 223555443332212455555
Q ss_pred H-hCCeEEe-ccccc
Q 017732 244 E-LGITLIA-YCPIA 256 (367)
Q Consensus 244 ~-~gi~via-~~pl~ 256 (367)
+ .|+.++. -.|+|
T Consensus 213 e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 213 ERFGIPYLYFPSPYG 227 (398)
T ss_dssp HHHT-EEEEEC-SBS
T ss_pred HHhCCCeeecccccc
Confidence 5 4999988 44544
No 60
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=65.98 E-value=68 Score=29.43 Aligned_cols=101 Identities=15% Similarity=-0.012 Sum_probs=63.8
Q ss_pred HHHHcCCccEEee-cC-CCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccC
Q 017732 185 DAVEQGLVKAVGV-SN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (367)
Q Consensus 185 ~l~~~G~ir~iGv-S~-~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~ 262 (367)
+-.++|+. .+|+ .+ -++... ++ +...|..+.++=+++.+++..... .++..++..|+..+.+-|-..
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~-e~---~a~~G~D~v~iD~EHg~~~~~~~~-~~~~a~~~~g~~~~VRvp~~~----- 73 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITT-EV---LGLAGFDWLLLDGEHAPNDVLTFI-PQLMALKGSASAPVVRPPWNE----- 73 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHH-HH---HHhcCCCEEEEecccCCCCHHHHH-HHHHHHhhcCCCcEEECCCCC-----
Confidence 33445664 3443 22 244333 33 233456788888899998875433 477788888888887665532
Q ss_pred CCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCC
Q 017732 263 KYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW 339 (367)
Q Consensus 263 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~ 339 (367)
...++.+|..+.. .++|-.++.++.++.+++..+
T Consensus 74 -------------------------------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 -------------------------------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred -------------------------------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1344556666633 678888888888888877766
No 61
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=65.87 E-value=1.3e+02 Score=29.03 Aligned_cols=146 Identities=11% Similarity=0.010 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
.++..+.++.+++.|++.|=.=- . +. + +++++.- .+++.|..-.. ..++.+...+-
T Consensus 127 ~~~~~~~a~~~~~~Gf~~~KiKv------~------~~-v-~avre~~----G~~~~l~vDaN---~~w~~~~A~~~--- 182 (361)
T cd03322 127 IPELLEAVERHLAQGYRAIRVQL------P------KL-F-EAVREKF----GFEFHLLHDVH---HRLTPNQAARF--- 182 (361)
T ss_pred HHHHHHHHHHHHHcCCCeEeeCH------H------HH-H-HHHHhcc----CCCceEEEECC---CCCCHHHHHHH---
Confidence 35566667777889999874310 1 32 2 3444432 23555554442 23555543332
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCC
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (367)
+++|. .+++.++-.|-+ .+-++.+.+|++...+. ..|=|.++...+..++.. .-++++|+...-.---
T Consensus 183 -~~~l~--~~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGi 251 (361)
T cd03322 183 -GKDVE--PYRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGI 251 (361)
T ss_pred -HHHhh--hcCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 23343 246666766643 23377788888887776 677777888888888664 3478888876543211
Q ss_pred cchhcHHHHHHHhCCeEEeccc
Q 017732 233 PEENGVKAACDELGITLIAYCP 254 (367)
Q Consensus 233 ~~~~~~~~~~~~~gi~via~~p 254 (367)
.+-..+.+.|+++|+.++..+.
T Consensus 252 t~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 252 TPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHHHHHHHcCCeeeccCC
Confidence 1122489999999999987543
No 62
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=65.69 E-value=59 Score=31.73 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=64.0
Q ss_pred EEEecCCC------------CChHHHHHHHHHHHHcCCcc----EEeec--CCCHHHHHHHHHHHHhcC----CCeeEec
Q 017732 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVK----AVGVS--NYSEKRLRNAYEKLKKRG----IPLASNQ 223 (367)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G~ir----~iGvS--~~~~~~l~~~~~~~~~~~----~~~~~~q 223 (367)
+-||.|+. ++.+++++++.+..++..=| |+=+. |.+.++..++.+.++... .+.-+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 67898864 45789999998886443312 22222 568888888888765321 1578999
Q ss_pred cccccccCCcc----h---hcHHHHHHHhCCeEEecccccccc
Q 017732 224 VNYSLIYRKPE----E---NGVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 224 ~~~n~~~~~~~----~---~~~~~~~~~~gi~via~~pl~~G~ 259 (367)
++||+...... . ..+.+.++++||.+......|..+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 99999653211 1 146677888999999998887543
No 63
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=65.23 E-value=1.3e+02 Score=28.63 Aligned_cols=153 Identities=12% Similarity=0.026 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
+++..+.++...+.|++.|=.-- +.... .+.+ +++++.. .++-|.--.. ..++.+.++ .
T Consensus 133 ~~~~~~~a~~~~~~Gf~~~KiKv--~~~~d------~~~v-~~vr~~~-----~~~~l~vDaN---~~~~~~~a~-~--- 191 (324)
T TIGR01928 133 DEQMLKQIESLKATGYKRIKLKI--TPQIM------HQLV-KLRRLRF-----PQIPLVIDAN---ESYDLQDFP-R--- 191 (324)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe--CCchh------HHHH-HHHHHhC-----CCCcEEEECC---CCCCHHHHH-H---
Confidence 35666777778899999874311 11110 2333 4444432 1333333331 234555432 1
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCC
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (367)
+++|. ..++.++-.|-. .+-++.+.+|+++-.+. ..|=|.++...+..+++. .-++++|+...-+---
T Consensus 192 -~~~l~--~~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGi 260 (324)
T TIGR01928 192 -LKELD--RYQLLYIEEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGL 260 (324)
T ss_pred -HHHHh--hCCCcEEECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCH
Confidence 34443 235666666532 34467788888876666 667788888888887654 2477888765543221
Q ss_pred cchhcHHHHHHHhCCeEEeccccccc
Q 017732 233 PEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 233 ~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
.+-..+...|+++|+.++..+.+..|
T Consensus 261 t~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 261 TEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHHHHHHcCCeEEEcceEccc
Confidence 11224899999999999876656554
No 64
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=64.96 E-value=1.2e+02 Score=29.15 Aligned_cols=152 Identities=13% Similarity=0.026 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
.++..+.++..++.|++.|=.=-...+-.. ..+.+ +++++.. .+++.|..-.. ..++.+...+-++
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~-----d~~~v-~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~- 207 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADE-----DLAVV-RSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQ- 207 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHh-----HHHHH-HHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHH-
Confidence 345555666667788876632110111000 02333 4444432 24566655552 2455654444332
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCC
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (367)
.|+.+ ++.++..|-.. +-++.+.+|++.-.|. ..|=+.++..++..+++. .-++++|+..+-.---
T Consensus 208 ~l~~~-----~i~~iEeP~~~---~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGi 274 (355)
T cd03321 208 ALDQE-----GLTWIEEPTLQ---HDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGV 274 (355)
T ss_pred HHHcC-----CCCEEECCCCC---cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCH
Confidence 23333 45555555332 2356677777765544 556666788888888664 2478888776654321
Q ss_pred cchhcHHHHHHHhCCeEEec
Q 017732 233 PEENGVKAACDELGITLIAY 252 (367)
Q Consensus 233 ~~~~~~~~~~~~~gi~via~ 252 (367)
.+-..+.+.|+.+|+.++..
T Consensus 275 t~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 275 TGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHHHHHHcCCeeccc
Confidence 11224899999999998643
No 65
>PRK00208 thiG thiazole synthase; Reviewed
Probab=64.89 E-value=1.1e+02 Score=27.96 Aligned_cols=70 Identities=10% Similarity=-0.041 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC--CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHH
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (367)
-++.+...+-.+-..+.+++++|=|=.+.++.. .+..+++++.++|+++|.+- +=+|+-++....++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~ 143 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA 143 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc
Confidence 466777777777788888999988877776654 46889999999999999764 33566666666666543
No 66
>PRK07328 histidinol-phosphatase; Provisional
Probab=64.51 E-value=1.2e+02 Score=27.96 Aligned_cols=166 Identities=16% Similarity=0.223 Sum_probs=87.2
Q ss_pred HHHHHHHHHHCCCCeEeCCCCcCCC------CCCCCCchHHHHHHHHHh---ccCCCCCCcEEEEeccCCCCCCCCHHHH
Q 017732 77 AKAAFDTSLDNGITFFDTAEVYGSR------ASFGAINSETLLGRFIKE---RKQRDPEVEVTVATKFAALPWRLGRQSV 147 (367)
Q Consensus 77 ~~~~l~~A~~~Gi~~~DTA~~Yg~g------~s~~~~~sE~~lG~al~~---~~~~~~R~~~~I~tK~g~~~~~~~~~~i 147 (367)
..++++.|.+.|+..+=.+++.... ....-.-+..-+-+.++. ...++.+=+|++-.-++.. + ..
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-----~-~~ 93 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-----P-GT 93 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-----C-Cc
Confidence 5678999999999987555442210 000000001112222221 1111112244444444332 2 13
Q ss_pred HHHHHHHHHhcCCCceeEEEEecCCCC--------------ChHHH----HHHHHHHHHcCCccEEeecCC---------
Q 017732 148 LAALKDSLFRLGLSSVELYQLHWAGIW--------------GNEGF----IDGLGDAVEQGLVKAVGVSNY--------- 200 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~lH~p~~~--------------~~~~~----~~~L~~l~~~G~ir~iGvS~~--------- 200 (367)
...+++.|++...||+ |.-+|+.+.. +.+++ .+.+.++.+.|.+..+|=-..
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 3456666777777877 7777975421 12233 345777888898887763221
Q ss_pred --CHHHHHHHHHHHHhcCCCeeEeccc--cccccCCcchhcHHHHHHHhCCeEE
Q 017732 201 --SEKRLRNAYEKLKKRGIPLASNQVN--YSLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 201 --~~~~l~~~~~~~~~~~~~~~~~q~~--~n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
....++++++.+...+..+.+|--. +..-+..+. ..+++.|++.|+.++
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~-~~il~~~~~~g~~it 225 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPS-PALLRACRERGIPVV 225 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCC-HHHHHHHHHcCCCEE
Confidence 1234567777777777767666431 111122221 249999999999854
No 67
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=63.94 E-value=1.4e+02 Score=28.73 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=11.6
Q ss_pred HHHHHHHHCCCCeEeC
Q 017732 79 AAFDTSLDNGITFFDT 94 (367)
Q Consensus 79 ~~l~~A~~~Gi~~~DT 94 (367)
+..+.|.+.|+..+|-
T Consensus 141 ~aA~~a~~aGfDgVei 156 (353)
T cd02930 141 RCAALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3344567889999986
No 68
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=63.89 E-value=59 Score=29.68 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCCCCcCC--------------CCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCC
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS--------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA 137 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--------------g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~ 137 (367)
.+.++-.++.++|-+.||.+|=|...... +.. -..+-.+|-. +++. ...++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~--dl~n~~lL~~-~A~t-----gkPvIlSTG~-- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASG--DLTNLPLLEY-IAKT-----GKPVILSTGM-- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GG--GTT-HHHHHH-HHTT------S-EEEE-TT--
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccc--cccCHHHHHH-HHHh-----CCcEEEECCC--
Confidence 46788999999999999999966532210 000 0001222222 2221 2456666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC---hHHHHHHHHHHHHcCCccEEeecCCCHHHHH
Q 017732 138 LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 206 (367)
Q Consensus 138 ~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~---~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~ 206 (367)
.+-+.|.++++--.++- .-|+.++|+...++ .+--+..+..|++.=- --||.|.|+.....
T Consensus 123 ----stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~ 186 (241)
T PF03102_consen 123 ----STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEA 186 (241)
T ss_dssp ------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHH
T ss_pred ----CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHH
Confidence 34666666666553333 45899999987643 2334566666664333 56799999765433
No 69
>PRK07329 hypothetical protein; Provisional
Probab=63.89 E-value=1.1e+02 Score=27.84 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCC----------CChHHH----HHHHHHHHHcC-CccEEee----------cCCC--
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGI----------WGNEGF----IDGLGDAVEQG-LVKAVGV----------SNYS-- 201 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~----------~~~~~~----~~~L~~l~~~G-~ir~iGv----------S~~~-- 201 (367)
..+++-|.+...||+ +.-+|+.+. .+.+++ .+.+.++.+.+ .+..+|= ...+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 445556667778888 788898532 122333 47788888877 6665541 1111
Q ss_pred --HHHHHHHHHHHHhcCCCeeEeccccc-cccCCcchhcHHHHHHHhCCeEEe
Q 017732 202 --EKRLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 202 --~~~l~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~~gi~via 251 (367)
...++++++.++..+..+.+|--.+- -..... -..+++.|++.|+..+.
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~-~~~~l~~~~~~g~~~i~ 213 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGL-YRYAIELYKQLGGKLFS 213 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcc-hHHHHHHHHHcCCeEEE
Confidence 24456677777777777777654321 111111 12478999999986444
No 70
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.55 E-value=1.6e+02 Score=29.19 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC------hH----H
Q 017732 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NE----G 178 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~------~~----~ 178 (367)
|+.|-+++++...+++. +-|+|.|-+.. ..-.+.+..-+++.-++++ ++++.+|.|+... .. .
T Consensus 83 ~~kL~~~I~~~~~~~~p~~~I~V~tTC~~---~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~~G~~~a~~a 156 (421)
T cd01976 83 DKKLAKAIDEAYELFPLNKGISVQSECPV---GLIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQSLGHHIANDA 156 (421)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEECCChH---HHhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCcccHHHHHHHHH
Confidence 77788888876544434 56888877642 2222233333433333444 5788999987532 12 2
Q ss_pred HHHHHHHH-----HHcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 179 FIDGLGDA-----VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 179 ~~~~L~~l-----~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
+++.|... ++.++|--||-.++. ..+.++...++..|+++.
T Consensus 157 i~~~l~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gi~v~ 202 (421)
T cd01976 157 IRDHILGKRNEFEPTPYDVNIIGDYNIG-GDAWASRILLEEMGLRVV 202 (421)
T ss_pred HHHHHhccCCccCCCCCeEEEEecCCCC-ccHHHHHHHHHHcCCeEE
Confidence 22323221 113567788855543 334444445556665543
No 71
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=63.32 E-value=1.3e+02 Score=28.03 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=23.4
Q ss_pred chhhHHHHHHHHHHHHHC-CCCeEeCCCCcCCC
Q 017732 70 DDRKMKAAKAAFDTSLDN-GITFFDTAEVYGSR 101 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~g 101 (367)
+.+|.+...+.+++.++. |++-|=..-.-|-+
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~ 48 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEG 48 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCc
Confidence 457778888999999998 99877554444443
No 72
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=63.21 E-value=1.3e+02 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCC
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 100 (367)
+.+|.+...+.+++.++.|++-+=..-..|-
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE 47 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGE 47 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCc
Confidence 4577889999999999999997754444443
No 73
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=63.01 E-value=1.4e+02 Score=28.35 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=76.5
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHH
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~ 149 (367)
..++.++..++++.+.+.|++.|.- .| |+..-...=.+++.. +++... -+++.|+|-.. .. . +
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~l---tG-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~----ll-~----~ 103 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRL---TG-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGL----LL-A----R 103 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE---EC-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCch----hH-H----H
Confidence 3467799999999999999988853 23 422111112333333 332210 12677877541 11 1 1
Q ss_pred HHHHHHHhcCCCceeEEEEecCCC----------CChHHHHHHHHHHHHcCCc--c--EEeecCCCHHHHHHHHHHHHhc
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKR 215 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~----------~~~~~~~~~L~~l~~~G~i--r--~iGvS~~~~~~l~~~~~~~~~~ 215 (367)
.-+.|++.|.+++- +-++..++ ...+++++.++.+++.|.- + .+-+.+.+.+++.++.+.+...
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 23446666766543 22343322 1357889999999998852 2 2333456778888888887777
Q ss_pred CCCeeE
Q 017732 216 GIPLAS 221 (367)
Q Consensus 216 ~~~~~~ 221 (367)
++.+.+
T Consensus 182 gv~~~~ 187 (334)
T TIGR02666 182 GVTLRF 187 (334)
T ss_pred CCeEEE
Confidence 654433
No 74
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=62.47 E-value=1.3e+02 Score=27.64 Aligned_cols=70 Identities=7% Similarity=-0.063 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC--CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHH
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (367)
-++.+...+-.+-..+.+++|+|=|=.+.++.. .+..+++++.++|+++|.+- +=+++-++...+++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA 143 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc
Confidence 466777777777788888999988887777664 46899999999999999754 33566666666666543
No 75
>PRK05588 histidinol-phosphatase; Provisional
Probab=62.37 E-value=1.2e+02 Score=27.51 Aligned_cols=164 Identities=10% Similarity=0.125 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCC---CchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGA---INSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~---~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l 151 (367)
....+.++.|.+.|+..+ .+++......... ..=+..+ +.++... ..+|++---++.. ++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~~~-----~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELGME-----KD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEeccc-----CC-CHHHH
Confidence 345688999999999998 6665321100000 0002222 2222221 2355555444322 22 34566
Q ss_pred HHHHHhcCCCceeEEEEecCCCC-----------ChHH----HHHHHHHHHH-cCCccEEe---ec----C---------
Q 017732 152 KDSLFRLGLSSVELYQLHWAGIW-----------GNEG----FIDGLGDAVE-QGLVKAVG---VS----N--------- 199 (367)
Q Consensus 152 ~~SL~~L~~dyiDl~~lH~p~~~-----------~~~~----~~~~L~~l~~-~G~ir~iG---vS----~--------- 199 (367)
++.|++...||+ +.-+|+.+.. +.++ ..+.+.++.+ .|++..+| .- .
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 778888888887 7788974321 2233 4466777776 46565444 11 0
Q ss_pred CCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
.....++++++.+...+..+.+|--.+...........++..|++.|+.+++
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~ 214 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYIT 214 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEE
Confidence 1134567777777777777777653221100010112478899999988544
No 76
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=61.91 E-value=1.3e+02 Score=27.60 Aligned_cols=105 Identities=10% Similarity=-0.014 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHH-HHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGL-GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L-~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
.+.+.+.+..++.++ -|-|+||+-. .|...+.++-+..+ ..+++.-. .-|.|-+++++.++++++.+. |. .-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G~-~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--GK-CV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--CC-cE
Confidence 456777777777665 5999999864 23333333333322 22222212 237888999999999877531 22 22
Q ss_pred EeccccccccCCcchhcHHHHHHHhCCeEEecccc
Q 017732 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (367)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl 255 (367)
+|- .+....+.....+++.++++|..++.+..-
T Consensus 96 INs--Is~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 96 VNS--INLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred EEe--CCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 332 222221111124788999999999987543
No 77
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=61.35 E-value=48 Score=29.12 Aligned_cols=149 Identities=12% Similarity=-0.013 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
|.+++.++++.+++.|+...|. | ++.+..++......+.+++++++-= ....+.+++.++
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i---~-----------~~~l~p~m~~iG~~w~~gei~va~~------~~a~~~~~~~l~ 69 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIEL---I-----------EKGLMAGMGVVGKLFEDGELFLPHV------MMSADAMLAGIK 69 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----------HHHHHHHHHHHHHHHcCCCccHHHH------HHHHHHHHHHHH
Confidence 5689999999999999987764 3 4444444444321112344444211 123444555555
Q ss_pred HHHHhcCCC----ceeEEEEec-CCCCChHHHHHHHHHHHHcCC-ccEEeecCCCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 153 DSLFRLGLS----SVELYQLHW-AGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 153 ~SL~~L~~d----yiDl~~lH~-p~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
.-...+..+ .---+++-. +++...-...=.-.-|+..|. |.++|.. .+.+.+.+.+.. .+++++.+.+
T Consensus 70 ~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~-----~~pd~v~lS~ 143 (197)
T TIGR02370 70 VLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKK-----EKPLMLTGSA 143 (197)
T ss_pred HHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHH-----cCCCEEEEcc
Confidence 544444421 111222222 222222222223334556664 5567754 355665555443 4677777766
Q ss_pred ccccCCcchhcHHHHHHHhCC
Q 017732 227 SLIYRKPEENGVKAACDELGI 247 (367)
Q Consensus 227 n~~~~~~~~~~~~~~~~~~gi 247 (367)
........-..+++.+++.|.
T Consensus 144 ~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 144 LMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred ccccCHHHHHHHHHHHHHcCC
Confidence 554443333458888888854
No 78
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=59.59 E-value=1.6e+02 Score=27.96 Aligned_cols=134 Identities=18% Similarity=0.073 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHC-CCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH
Q 017732 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~ 150 (367)
.+.++..+++++..+. ||+-+-- ..|.... .+...|-+.++..........+-|.|+... ..+..+...
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~Vil----SGGDPl~--~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v----~~p~rit~e 188 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVIL----TGGDPLV--LSPRRLGDIMARLAAIDHVKIVRFHTRVPV----ADPARVTPA 188 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEE----eCCCccc--CCHHHHHHHHHHHHhCCCccEEEEeCCCcc----cChhhcCHH
Confidence 4557777777776644 7875421 1121100 112333333333211000234567777521 223334444
Q ss_pred HHHHHHhcCCCceeEEEEecCCCC-ChHHHHHHHHHHHHcCCccEE------eecCCCHHHHHHHHHHHHhcCCC
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQGLVKAV------GVSNYSEKRLRNAYEKLKKRGIP 218 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~~-~~~~~~~~L~~l~~~G~ir~i------GvS~~~~~~l~~~~~~~~~~~~~ 218 (367)
+-+.|++.|. . ..+-+|..... -.++++++++.|++.|..-.. |+ |.+.+.+.++.+.+...++.
T Consensus 189 ll~~L~~~g~-~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 189 LIAALKTSGK-T-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHHcCC-c-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCe
Confidence 5556666663 2 34666764321 147788888888888842211 33 46667777777666655553
No 79
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=59.53 E-value=2.2e+02 Score=32.56 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=54.7
Q ss_pred hcCCCceeEEEEecCCC--CChHHHHHHHHHHHHcC-Cc--cEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccC
Q 017732 157 RLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG-LV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (367)
Q Consensus 157 ~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G-~i--r~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (367)
.-|-+.||+- ++. .+.++.+..+..+.+.- .+ --|-|-+.+++.++.+++.+. .+.-+|-+ |...-
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~---G~~IINSI--s~~~~ 465 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ---GKGIVNSI--SLKEG 465 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC---CCCEEEeC--CCCCC
Confidence 5788999994 443 34444444444444321 11 237778889999999877532 23444433 33321
Q ss_pred CcchhcHHHHHHHhCCeEEeccccccc
Q 017732 232 KPEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 232 ~~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
...-..+++.|++.|..++.+.--..|
T Consensus 466 ~~~~~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 466 EEKFIEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred CccHHHHHHHHHHhCCCEEEEecCCCC
Confidence 111114899999999999997543334
No 80
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=59.41 E-value=1.7e+02 Score=28.04 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHCCCCeEeCCCCcCC--CCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH
Q 017732 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~ 150 (367)
+.++..+.++.+++.|++.|=.--..+. +.. +.....+.+ +++++.- -+++-|.--.. ..++.+...+
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~-~~~~d~~~v-~avr~~~----g~~~~l~vDan---~~~~~~~A~~- 189 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHA-GLRKNVELV-RAIREAV----GYDVDLMLDCY---MSWNLNYAIK- 189 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchH-HHHHHHHHH-HHHHHHh----CCCCcEEEECC---CCCCHHHHHH-
Confidence 3466667778888999998854211110 000 000012233 3333322 13444444431 2355554433
Q ss_pred HHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccc
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (367)
-+++|. .+++.++-.|-+ .+-++.+.+|+++..|. ..|=+.++...+.++++. .-++++|+..+-.
T Consensus 190 ---~~~~l~--~~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~ 256 (341)
T cd03327 190 ---MARALE--KYELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWV 256 (341)
T ss_pred ---HHHHhh--hcCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCcccc
Confidence 223332 235555555532 23467777888887776 666677788888888664 2478888876554
Q ss_pred cCCcchhcHHHHHHHhCCeEEecc
Q 017732 230 YRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
--=.+-..+...|+++|+.++..+
T Consensus 257 GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 257 GGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CCHHHHHHHHHHHHHcCCeecccc
Confidence 321122358999999999987653
No 81
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=59.23 E-value=23 Score=32.89 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=62.4
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecC---CCHHHHHHHHHHHHhcCCCeeEecccccccc
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~---~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (367)
++++..-+..|+..+..|.... ..++++ ++..- ..|=|+. +...++..+++..+..+++..++-++||+.+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-CpVi~s---l~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-CPVIAS---LKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-ChHHHh---hccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 3344444447888888764321 122222 22222 2344442 4557888888889999999999999997766
Q ss_pred CCcchhcHHHHHHHhCCeEEecccccc
Q 017732 231 RKPEENGVKAACDELGITLIAYCPIAQ 257 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~gi~via~~pl~~ 257 (367)
- ++.++|++.|+.+++--|+-.
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcch
Confidence 4 389999999999999888764
No 82
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=58.93 E-value=1.1e+02 Score=28.25 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=30.8
Q ss_pred cHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017732 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (367)
Q Consensus 237 ~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 302 (367)
..++.|++.|..++.... .... . .....+.+++..+.+.++-++|+++|+
T Consensus 98 ~~i~~a~~lG~~~v~~~~--~~~~-----~---------~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG--YDVY-----Y---------EEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHhCCCEEEecC--cccc-----c---------CcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 478889999999886421 1000 0 001234456666777788888888776
No 83
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=58.61 E-value=1.6e+02 Score=27.51 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHHH-CCCCeEeCCCCcCCC
Q 017732 70 DDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSR 101 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~g 101 (367)
+.+|.+...+++++.++ .|++-|=..-..|-+
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~ 51 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEA 51 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCcccc
Confidence 45778899999999999 999877555555443
No 84
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=58.41 E-value=1.6e+02 Score=28.48 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=84.6
Q ss_pred ccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHHC---CCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCC
Q 017732 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN---GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (367)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~---Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~ 125 (367)
..++-=|.++-.- +......++.++..+++....+. =+-++|..+..+.- ...+-+.+..
T Consensus 28 ~~~C~RC~~l~hy---~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~~------ 90 (360)
T TIGR03597 28 EVYCQRCFRLKHY---NEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVGG------ 90 (360)
T ss_pred Ceeecchhhhhcc---CccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhCC------
Confidence 3455555554332 21111234456666666655432 23466865544432 1222233321
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 205 (367)
..-++|.+|+=-.+...+.+.+.+.+.+-++.++....|++++..-.....+++++.+.++.+.+.|-.+|.+|..-..+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 35688999984333334456666667666777776545677765555567889999998887777888999999876655
Q ss_pred HHH
Q 017732 206 RNA 208 (367)
Q Consensus 206 ~~~ 208 (367)
-..
T Consensus 171 iN~ 173 (360)
T TIGR03597 171 INK 173 (360)
T ss_pred HHH
Confidence 443
No 85
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=58.07 E-value=66 Score=28.68 Aligned_cols=91 Identities=18% Similarity=0.079 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEe-cCCCCChHHHHHHHHHHHHcCCccEEeecC-CCHHHHHHHHHHHHhcCCCe
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~~ 219 (367)
.+++.+.... .+|.||+=+++.- .|...+.++.-+....... ++.+||.. .+.+.+.++++. ..+
T Consensus 10 t~~eda~~a~-----~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~---~~~VgVf~n~~~~~i~~i~~~-----~~l 76 (208)
T COG0135 10 TRLEDAKAAA-----KAGADYIGFIFVPKSPRYVSPEQAREIASAVPK---VKVVGVFVNESIEEILEIAEE-----LGL 76 (208)
T ss_pred CCHHHHHHHH-----HcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC---CCEEEEECCCCHHHHHHHHHh-----cCC
Confidence 3455555543 6999999888775 6665555444333333222 78999875 477778887765 579
Q ss_pred eEeccccccccCCcchhcHHHHHHHhC-CeEEe
Q 017732 220 ASNQVNYSLIYRKPEENGVKAACDELG-ITLIA 251 (367)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~~~~~~~~g-i~via 251 (367)
+++|+.-. +..+.++..++.. +.|+-
T Consensus 77 d~VQlHG~------e~~~~~~~l~~~~~~~v~k 103 (208)
T COG0135 77 DAVQLHGD------EDPEYIDQLKEELGVPVIK 103 (208)
T ss_pred CEEEECCC------CCHHHHHHHHhhcCCceEE
Confidence 99998743 2224666666654 66653
No 86
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.84 E-value=67 Score=29.70 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-------CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHH
Q 017732 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (367)
Q Consensus 140 ~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-------~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~ 212 (367)
+.++.+...+-++. |.++|+|+|++-+...... ....+.++.+.++.+ +..+..+++.........+.. +
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~-a 91 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEP-A 91 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHH-H
Q ss_pred HhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEec
Q 017732 213 KKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~ 252 (367)
...+++..-+....|-++.-.+ .+++++++|+.|...
T Consensus 92 ~~~gv~~iri~~~~~~~~~~~~---~i~~ak~~G~~v~~~ 128 (266)
T cd07944 92 SGSVVDMIRVAFHKHEFDEALP---LIKAIKEKGYEVFFN 128 (266)
T ss_pred hcCCcCEEEEecccccHHHHHH---HHHHHHHCCCeEEEE
No 87
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=57.68 E-value=1.9e+02 Score=28.22 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC------hHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~------~~~~~~~L 183 (367)
|+.|-+++++...+++.+=++|.|-+-. ..-.+.+..-+++.-++.+ +.++.+|.|+... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPT---GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7777788876544332455777777642 2222333333333333443 7889999886522 34455555
Q ss_pred HHHH---------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCe
Q 017732 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 184 ~~l~---------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.+.. +++.|--||..++ +..+.++.+.++..|+.+
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gi~~ 189 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNI-GGDAWVIKPLLEELGIRV 189 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEecccc-chhHHHHHHHHHHcCCEE
Confidence 5443 2456778887765 334555555566666544
No 88
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=57.31 E-value=87 Score=26.91 Aligned_cols=123 Identities=20% Similarity=0.241 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCC--CCCchHHHHHHHHHhccCCCCCCcEEEEeccCCC---CCCCCHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASF--GAINSETLLGRFIKERKQRDPEVEVTVATKFAAL---PWRLGRQSVLA 149 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~--~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~---~~~~~~~~i~~ 149 (367)
+++..++-.++..|-..+ ..|||.|- --|-+++++|++-++++.- --+-++|-.... ..+++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl----~cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVL----ACGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEE----EECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 567778889999999999 67787651 1113678888887776531 245555444321 246677755
Q ss_pred HHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHH
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 210 (367)
+.+..+.++.. =|+++==.+.. ...-++++++..|++|. .-||++.-+...+..+.+
T Consensus 99 -FsRqveA~g~~-GDvLigISTSG-NS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 99 -FSRQVEALGQP-GDVLIGISTSG-NSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLLD 155 (176)
T ss_pred -HHHHHHhcCCC-CCEEEEEeCCC-CCHHHHHHHHHHHHcCC-EEEEEecCCCcccccccc
Confidence 34455566643 37776655543 46779999999999996 569999888777776643
No 89
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=56.68 E-value=2.1e+02 Score=28.33 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=53.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC--hHHHHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~--~~~~~~~L~~l~ 187 (367)
++.|-+++.+...+.+.+-++|.|-+-. ..-.+.+..-+++.-++++ +.++.+|.|+... ....-.+++.+.
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~~---~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~g~~~al~~l~ 143 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCTS---SILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNELQAADETFEQLV 143 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccH---HHHhhCHHHHHHHhhhccC---CCeEEecCCCccchHHHHHHHHHHHHH
Confidence 3455555554432222345667666531 2222333333333223332 5788889987632 122222222222
Q ss_pred -----------------HcCCccEEeecCCC---HHHHHHHHHHHHhcCCCeeE
Q 017732 188 -----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 188 -----------------~~G~ir~iGvS~~~---~~~l~~~~~~~~~~~~~~~~ 221 (367)
++.+|--||.++.+ +..+.++....+..|+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~ 197 (430)
T cd01981 144 RFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNV 197 (430)
T ss_pred HHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 23567788877543 56666676667777765544
No 90
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=56.62 E-value=41 Score=31.57 Aligned_cols=105 Identities=18% Similarity=0.101 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-hHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
++.+.. ..+-+.|.++|+++|++-.++.|...+ ..+.++.+..+.+...++...+. .+...++.+.+. +....
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 445443 446667899999999998665564322 23345666666555556766665 467777776553 33322
Q ss_pred Eeccccccc------cCCcch-----hcHHHHHHHhCCeEEec
Q 017732 221 SNQVNYSLI------YRKPEE-----NGVKAACDELGITLIAY 252 (367)
Q Consensus 221 ~~q~~~n~~------~~~~~~-----~~~~~~~~~~gi~via~ 252 (367)
.+-+..|-. ....++ ...+++++++|+.+.++
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 221222211 111111 24888999999988643
No 91
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=56.36 E-value=39 Score=30.01 Aligned_cols=73 Identities=11% Similarity=0.026 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEe-cCCCCChHHHHHHHHHHHHcCCccEEeec-CCCHHHHHHHHHHHHhcCCCe
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.+.+.++.. ..+|.||+=+.+.. .|...+.+..-+....+ .+.++.+||. |.+++.+.++.+. ..+
T Consensus 9 t~~eda~~~-----~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~-----~~~ 76 (207)
T PRK13958 9 TTIKDVTAA-----SQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN-----TSI 76 (207)
T ss_pred CcHHHHHHH-----HHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----CCC
Confidence 345555543 46999999997544 34434444443333332 3568889996 6788888888665 578
Q ss_pred eEecccc
Q 017732 220 ASNQVNY 226 (367)
Q Consensus 220 ~~~q~~~ 226 (367)
+++|+.-
T Consensus 77 d~vQLHG 83 (207)
T PRK13958 77 NTIQLHG 83 (207)
T ss_pred CEEEECC
Confidence 9999974
No 92
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.75 E-value=2e+02 Score=28.13 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=66.2
Q ss_pred CCceeEEEEecCCC------------CChHHHHHHHHHHH-HcCC---ccEEeec--CCCHHHHHHHHHHHHhcC-CCee
Q 017732 160 LSSVELYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRG-IPLA 220 (367)
Q Consensus 160 ~dyiDl~~lH~p~~------------~~~~~~~~~L~~l~-~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~-~~~~ 220 (367)
.++-=.+-||.+++ ++.+++++++.++. +.|+ |+|+=+. |.+.+++.++.+.++... .+..
T Consensus 236 l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~ 315 (373)
T PRK14459 236 LPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVH 315 (373)
T ss_pred CCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeE
Confidence 33333467798875 34688999988776 4453 4455555 457777878877766431 2578
Q ss_pred EeccccccccCC----cch---hcHHHHHHHhCCeEEeccccccc
Q 017732 221 SNQVNYSLIYRK----PEE---NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 221 ~~q~~~n~~~~~----~~~---~~~~~~~~~~gi~via~~pl~~G 258 (367)
++-++||+.... +.. ..+.+..+++||.+......|..
T Consensus 316 VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 316 VNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred EEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 899999996532 111 14677788899999998888754
No 93
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=55.74 E-value=1.2e+02 Score=28.98 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=51.6
Q ss_pred HHhcCCCceeEEEEec-CCC--CChHHHHHHHHHHHHcCCcc-EEeecCC---CHHHHHHHHHHHHhcCCCeeEeccccc
Q 017732 155 LFRLGLSSVELYQLHW-AGI--WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~-p~~--~~~~~~~~~L~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (367)
-+.+|.|+||+-+.-. |+. ...++....++...+.=.+= .|..|.. +++.++++++.++.. ++-++-....
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat~e 162 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAEED 162 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECCHH
Confidence 3578888888865322 321 12334444444443322222 2555533 788888887775422 2333222211
Q ss_pred cccCCcchhcHHHHHHHhCCeEEeccccc
Q 017732 228 LIYRKPEENGVKAACDELGITLIAYCPIA 256 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gi~via~~pl~ 256 (367)
+ .+ .+.+.|+++|..|++.+|..
T Consensus 163 ----n-~~-~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 163 ----N-YK-KIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred ----H-HH-HHHHHHHHhCCeEEEEcHHH
Confidence 1 22 48899999999999877543
No 94
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=55.52 E-value=79 Score=28.34 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCe
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.++.+... .+-+.|.++|+|+|++- .|.. ....+.++.+.+.... .+..+++......++...+.+...+...
T Consensus 10 ~~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKL-EIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 35555444 45556999999999997 3321 1234455555555555 5556677778888888777666666554
Q ss_pred eEeccccccccCC------c-----chhcHHHHHHHhCCeE
Q 017732 220 ASNQVNYSLIYRK------P-----EENGVKAACDELGITL 249 (367)
Q Consensus 220 ~~~q~~~n~~~~~------~-----~~~~~~~~~~~~gi~v 249 (367)
..+-...|..+.. . .-...++++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4444444441110 0 0014788999999998
No 95
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=55.04 E-value=10 Score=36.81 Aligned_cols=205 Identities=17% Similarity=0.203 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHH------HHHHHHHhccCCCCCCcEEEEeccCCC---CCCCC
Q 017732 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET------LLGRFIKERKQRDPEVEVTVATKFAAL---PWRLG 143 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~------~lG~al~~~~~~~~R~~~~I~tK~g~~---~~~~~ 143 (367)
+.++..+.|+.|.+.|++.+-|+=+...... +. .|.++.++ ..+.|+.-+.+. ..+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~------~~~~~~~~~l~~~a~~-------~~~~v~~Disp~~l~~lg~~ 78 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDP------EDYLERLKELLKLAKE-------LGMEVIADISPKVLKKLGIS 78 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------------HHHHHHHHHHHHHH-------CT-EEEEEE-CCHHHTTT-B
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCH------HHHHHHHHHHHHHHHH-------CCCEEEEECCHHHHHHcCCC
Confidence 3578889999999999999999866654321 22 23333333 356666666431 01122
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEec
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 223 (367)
.+.+ ..++.||++.|=+ .. ..+. +.+.+|-++|.--.+=.|+.+.+.+..+.+. +..+.-+.
T Consensus 79 ~~dl-----~~~~~lGi~~lRl---D~--Gf~~----~~ia~ls~ng~~I~LNASti~~~~l~~L~~~----~~~~~~i~ 140 (357)
T PF05913_consen 79 YDDL-----SFFKELGIDGLRL---DY--GFSG----EEIAKLSKNGIKIELNASTITEEELDELIKY----GANFSNII 140 (357)
T ss_dssp TTBT-----HHHHHHT-SEEEE---SS--S-SC----HHHHHHTTT-SEEEEETTT--CCHHHHHCCT----T--GGGEE
T ss_pred HHHH-----HHHHHcCCCEEEE---CC--CCCH----HHHHHHHhCCCEEEEECCCCChHHHHHHHHh----cCCHHHeE
Confidence 2211 1245566543322 11 1223 3334454447666777788777777777553 12222222
Q ss_pred cccccccCCcchh-------cHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHH
Q 017732 224 VNYSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKEL 296 (367)
Q Consensus 224 ~~~n~~~~~~~~~-------~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~i 296 (367)
.-+|. .++++.. ..-.+.++.|+.+.|+-|--. ...|.. ....|+-
T Consensus 141 a~HNf-YPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGPl-~~GLPTl------------------------ 193 (357)
T PF05913_consen 141 ACHNF-YPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGPL-YEGLPTL------------------------ 193 (357)
T ss_dssp EE----B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTTT--S--BSB------------------------
T ss_pred EEecc-cCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCCc-cCCCCcc------------------------
Confidence 23333 3333221 233456888999999877553 222211 1111111
Q ss_pred HHHcCCCHHHHHHHHHhcCCCe-EEecCCC--CHHHHHHHHhh
Q 017732 297 GENYSKTSTQVGLNWLLAQDNV-VPIPGAK--NAEQAAEFAGA 336 (367)
Q Consensus 297 a~~~~~s~~q~al~~~l~~~~v-~vi~g~~--~~~~l~enl~a 336 (367)
++|.--+..++.+.++..+.| -|++|-. +.+++++....
T Consensus 194 -E~hR~~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 194 -EKHRNLPPYAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp -GGGTTS-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred -HHHcCCCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 223223345577777777767 7888865 34444444444
No 96
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=54.30 E-value=2.2e+02 Score=27.86 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHCCCC-eEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEec--------cCCCCCCCC
Q 017732 73 KMKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATK--------FAALPWRLG 143 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK--------~g~~~~~~~ 143 (367)
+.++=.+-++.|.+.|.. ..|-+. .|+ -..+.+++-... ++-|-|- +.....+.+
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLSt-Ggd---------l~eiR~~ii~~s------~vPvGTVPIYqA~~~~~~~~~~~t 139 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLST-GGD---------LHEIREWIIRNS------PVPVGTVPIYQALEEVNGKVEDLT 139 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEeccc-CCC---------HHHHHHHHHhcC------CCCcCCchHHHHHHHHhcchhhCC
Confidence 345555667899999965 556553 344 445555553321 1111110 000013567
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEec
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 223 (367)
.+.+...+++..+ |-+|.+-+|. .-.++.++.+++.|+ ..|+-+-...-+..++-. +
T Consensus 140 ~d~~~~~v~~qa~----~GVdfmTIHa------GV~~~~~~~~~~~~R--~~giVSRGGsi~a~Wml~---~-------- 196 (432)
T COG0422 140 EDDFFDTVEKQAE----QGVDFMTIHA------GVLLEYVPRTKRSGR--VTGIVSRGGSIMAAWMLH---N-------- 196 (432)
T ss_pred HHHHHHHHHHHHH----hCCcEEEeeh------hhhHHHHHHHHhcCc--eeeeeccchHHHHHHHHH---c--------
Confidence 8888888877766 4567788896 346788999999995 567666665655555432 1
Q ss_pred cccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCC
Q 017732 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (367)
Q Consensus 224 ~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~ 264 (367)
..=|++..... ++++.|++++|.+ .||.|+--|..
T Consensus 197 ~~ENply~~fd--~lleI~k~yDvtl----SLGDglRPG~i 231 (432)
T COG0422 197 HKENPLYEHFD--ELLEIFKEYDVTL----SLGDGLRPGCI 231 (432)
T ss_pred CCcCchhhhHH--HHHHHHHHhCeee----eccCCCCCCcc
Confidence 12355554433 5999999999987 46777654443
No 97
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=54.17 E-value=1.8e+02 Score=26.70 Aligned_cols=169 Identities=14% Similarity=0.029 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCCCCcCCC-CC----CCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHH
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSR-AS----FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g-~s----~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~ 146 (367)
.+.++..++++.-.+.||..++....-+.+ .+ ......++.+.+..+..+ +.++.+..-. .....+.
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~----~~~~~~~~~~----~~~~~~~ 90 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK----QAKLGVLLLP----GIGTVDD 90 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc----CCEEEEEecC----CccCHHH
Confidence 345888889999899999999987210000 00 000123566655544432 2344322211 1122333
Q ss_pred HHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEee---cCCCHHHHHHHHHHHHhcCCCeeEec
Q 017732 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV---SNYSEKRLRNAYEKLKKRGIPLASNQ 223 (367)
Q Consensus 147 i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGv---S~~~~~~l~~~~~~~~~~~~~~~~~q 223 (367)
++..++ .++|.+-++.--. +...+.+.++.+++.|+--.+.+ +.++++.+.++.+.+...|...-.+=
T Consensus 91 ----i~~a~~-~g~~~iri~~~~s----~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 161 (263)
T cd07943 91 ----LKMAAD-LGVDVVRVATHCT----EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT 161 (263)
T ss_pred ----HHHHHH-cCCCEEEEEechh----hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 444443 4777766644221 24567788888999997655554 33577777777776665553321111
Q ss_pred cccccccCCcchhcHHHHHHHh----CCeEEeccccccc
Q 017732 224 VNYSLIYRKPEENGVKAACDEL----GITLIAYCPIAQG 258 (367)
Q Consensus 224 ~~~n~~~~~~~~~~~~~~~~~~----gi~via~~pl~~G 258 (367)
=-+..+.+... .+++..++++ .+++..+.-+|.+
T Consensus 162 DT~G~~~P~~v-~~lv~~l~~~~~~~~l~~H~Hn~~GlA 199 (263)
T cd07943 162 DSAGAMLPDDV-RERVRALREALDPTPVGFHGHNNLGLA 199 (263)
T ss_pred CCCCCcCHHHH-HHHHHHHHHhCCCceEEEEecCCcchH
Confidence 11222232221 2466666664 3455555555543
No 98
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=54.10 E-value=53 Score=29.85 Aligned_cols=132 Identities=9% Similarity=-0.003 Sum_probs=68.1
Q ss_pred cccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHH-CCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCC
Q 017732 48 VTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPE 126 (367)
Q Consensus 48 vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R 126 (367)
-|+|-+||..+.. .++++.|++ .|...+=.|=---+-.. ...+.-+ +... ++
T Consensus 8 ~SRL~lGTgky~s-----------------~~~m~~ai~aSg~evvTvalRR~~~~~---~~~~~~~---~~~i----~~ 60 (247)
T PF05690_consen 8 RSRLILGTGKYPS-----------------PEVMREAIEASGAEVVTVALRRVNLGS---KPGGDNI---LDYI----DR 60 (247)
T ss_dssp S-SEEEE-STSSS-----------------HHHHHHHHHHTT-SEEEEECCGSTTTS----TTCHHC---CCCT----TC
T ss_pred ecceEEecCCCCC-----------------HHHHHHHHHHhCCcEEEEEEecccCCC---CCCCccH---HHHh----cc
Confidence 3788899987643 245666664 57777654421111000 0001111 1221 24
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC--CChHHHHHHHHHHHHcCCccEEeecCCCHHH
Q 017732 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (367)
Q Consensus 127 ~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 204 (367)
+++.+.--.. .-++.+...+-.+-..+.+++++|=|=.+.++.. .++.+++++-+.|+++|-+- +=-++-++-.
T Consensus 61 ~~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~ 136 (247)
T PF05690_consen 61 SGYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVL 136 (247)
T ss_dssp CTSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHH
T ss_pred cCCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHH
Confidence 5555543332 2467887778888888899999888766665543 45789999999999999543 2223334444
Q ss_pred HHHHHH
Q 017732 205 LRNAYE 210 (367)
Q Consensus 205 l~~~~~ 210 (367)
.+++.+
T Consensus 137 akrL~d 142 (247)
T PF05690_consen 137 AKRLED 142 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 99
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=53.83 E-value=2.1e+02 Score=27.53 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHCC-CCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 75 ~~~~~~l~~A~~~G-i~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
++..+.+..+++.| ++.|=.=- |...- ..-.+.| +++++.- .+++-|.--.. ..++.+...+-+ +
T Consensus 144 ~~~~~~~~~~~~~G~f~~~KiKv--g~~~~---~~d~~~v-~avr~~~----g~~~~l~iDaN---~~~~~~~A~~~~-~ 209 (365)
T cd03318 144 ERDIAEAEEMLEAGRHRRFKLKM--GARPP---ADDLAHV-EAIAKAL----GDRASVRVDVN---QAWDESTAIRAL-P 209 (365)
T ss_pred HHHHHHHHHHHhCCCceEEEEEe--CCCCh---HHHHHHH-HHHHHHc----CCCcEEEEECC---CCCCHHHHHHHH-H
Confidence 33445556677888 88875421 11000 0002333 3344332 13444544442 234554433322 3
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCC
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (367)
.|+.+ ++.++-.|-+ .+-++.+.+|+++..|. ..|=+-++..++.++++. .-++++|+.....---
T Consensus 210 ~l~~~-----~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGi 276 (365)
T cd03318 210 RLEAA-----GVELIEQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGL 276 (365)
T ss_pred HHHhc-----CcceeeCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCH
Confidence 33333 4455555532 23467788888876666 666667788888887664 2367777765443211
Q ss_pred cchhcHHHHHHHhCCeEEecccccc
Q 017732 233 PEENGVKAACDELGITLIAYCPIAQ 257 (367)
Q Consensus 233 ~~~~~~~~~~~~~gi~via~~pl~~ 257 (367)
.+-..+...|+++|+.++..+-+..
T Consensus 277 t~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 277 RRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred HHHHHHHHHHHHcCCceeecCcchh
Confidence 1122488999999999886544433
No 100
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=53.26 E-value=1.8e+02 Score=26.52 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=48.0
Q ss_pred HHHhcCCCceeEEEEecCCCC--ChHHHHHHHHHHHHcCCccEEeecCC-CHHHHHHHHHHHHhcCCCeeEecccccccc
Q 017732 154 SLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~--~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (367)
-|..+|. |.+.+|..+.. ...--++.+.++++.-.+.-|..... +++++.++... . ..+.+.+---+..
T Consensus 163 ~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g--~~dgv~~g~a~~~ 234 (254)
T TIGR00735 163 EVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---G--KADAALAASVFHY 234 (254)
T ss_pred HHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---C--CcceeeEhHHHhC
Confidence 3455665 55666654331 11223556666666666777766654 66777777553 1 2444333222222
Q ss_pred CCcchhcHHHHHHHhCCeE
Q 017732 231 RKPEENGVKAACDELGITL 249 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~gi~v 249 (367)
....-.++.+.|+++||.+
T Consensus 235 ~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 235 REITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 2222235889999999874
No 101
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=51.78 E-value=70 Score=31.77 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhc---CCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccc
Q 017732 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (367)
Q Consensus 181 ~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~p 254 (367)
+-...+-+.|-+..+|....+++++++.+..++.. +.||-+|-+ .++-++.. +.++++.+.++||.++..+-
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~-e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPEL-EEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchh-HHHHHHHHHHcCCCEEEecc
Confidence 33444558899999999999999999999888773 457777654 23322222 23589999999998876543
No 102
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=51.74 E-value=48 Score=31.28 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCC-----CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCC
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-----~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 218 (367)
.+.+++.|.+-+++.++|++=++..-.-+. .+...+++.|++..+++.-. + ++..+-... +-..|.+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~A--Al~~g~~ 202 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYA--ALEAGVP 202 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHH--HHHTTEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHH--HHHCCCC
Confidence 456888999999999998655544433222 12345788888888876432 2 223322222 1123333
Q ss_pred eeEeccccccccCCcchhcHHHHHHHhCCeEEe---ccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHH
Q 017732 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA---YCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKE 295 (367)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via---~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (367)
| +|=.+-+..+- + ++.+.++++|+.+.. -++++.|++ --+-++.+
T Consensus 203 f-vN~tP~~~a~~-P---~l~ela~~~gvpi~GdD~KT~lAAplv---------------------------lDLirl~~ 250 (295)
T PF07994_consen 203 F-VNGTPSNIADD-P---ALVELAEEKGVPIAGDDGKTPLAAPLV---------------------------LDLIRLAK 250 (295)
T ss_dssp E-EE-SSSTTTTS-H---HHHHHHHHHTEEEEESSBS-HHHHHHH---------------------------HHHHHHHH
T ss_pred e-EeccCccccCC-H---HHHHHHHHcCCCeecchHhhhhhhHHH---------------------------HHHHHHHH
Confidence 2 23333333321 2 489999999999874 122222211 11236778
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCeEEecCCCCHHHH
Q 017732 296 LGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQA 330 (367)
Q Consensus 296 ia~~~~~s~~q~al~~~l~~~~v~vi~g~~~~~~l 330 (367)
+|.+.|....+-.++|.+..|. +=+|......+
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~--~~~g~~~~~~l 283 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM--VPPGPPQEHDL 283 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T----TTSTT--HH
T ss_pred HHHHcCCCChhHHHHHHhcCCC--ccCCCCCCCcH
Confidence 9999998889999999999983 34455554444
No 103
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=51.54 E-value=89 Score=30.25 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCceeEEEEecCCCC----ChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe
Q 017732 147 VLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (367)
Q Consensus 147 i~~~l~~SL~~L~~dyiDl~~lH~p~~~----~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (367)
-+..+-+.|.++|+++|++-..-.|... +.+++++.+. +...+++.++. .+...++.+.+. +.....+
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~----g~~~v~i 140 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAA----GAKEVAV 140 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHc----CcCEEEE
Confidence 4455667799999999999755555332 2345555554 33335665664 477888887664 2222111
Q ss_pred c-------cccccccCCcch-----hcHHHHHHHhCCeEEec
Q 017732 223 Q-------VNYSLIYRKPEE-----NGVKAACDELGITLIAY 252 (367)
Q Consensus 223 q-------~~~n~~~~~~~~-----~~~~~~~~~~gi~via~ 252 (367)
- ...|+- ...++ .+++++++++|+.+.++
T Consensus 141 ~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 141 FASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1 112221 11111 15888999999988643
No 104
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=51.03 E-value=2e+02 Score=26.43 Aligned_cols=101 Identities=18% Similarity=0.115 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEE-EecCCC--CChH----HHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHh
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNE----GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~-lH~p~~--~~~~----~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 214 (367)
.+.+.+.+..++.+ +-|-|+||+-. --+|+. .+.+ .+...++.+++.-.+- +.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 45566666555554 56889999953 234543 2333 3333456666653443 88899999999998765
Q ss_pred cCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccc
Q 017732 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (367)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~p 254 (367)
|. .-+| ..+..... ..+++.++++|..++.+..
T Consensus 96 -G~-~iIN--disg~~~~---~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 96 -GA-DIIN--DVSGGSDD---PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred -CC-CEEE--eCCCCCCC---hHHHHHHHHcCCCEEEECC
Confidence 22 2232 22333211 2489999999999998543
No 105
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=50.48 E-value=2.2e+02 Score=26.67 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=25.1
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCC
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSR 101 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g 101 (367)
+.+|.+...++++..++.|++-|=+.-..|-+
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~ 47 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEP 47 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCccc
Confidence 45788999999999999999977655555544
No 106
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=50.45 E-value=79 Score=28.23 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=55.7
Q ss_pred eeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHH
Q 017732 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (367)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~ 241 (367)
.++.++-.|-+. +-++.+.+|.+...+. ..+=|.++.+.+.++++. ..++++|+..+..---.+-..+...
T Consensus 120 ~~i~~iEeP~~~---~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCAP---DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCCc---cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 466666666432 2356677788887776 445555677776655443 2478888776554321111248899
Q ss_pred HHHhCCeEEeccccccc
Q 017732 242 CDELGITLIAYCPIAQG 258 (367)
Q Consensus 242 ~~~~gi~via~~pl~~G 258 (367)
|+++|+.++..+.+..+
T Consensus 192 a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 192 AEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHcCCEEeecCCCCCH
Confidence 99999999987776554
No 107
>PRK14017 galactonate dehydratase; Provisional
Probab=50.41 E-value=2.5e+02 Score=27.33 Aligned_cols=157 Identities=14% Similarity=0.109 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCC-----cCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEV-----YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~-----Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~ 148 (367)
+++..+.++.+++.|++.|=.--. ++.... ...-.+.| +++++.- -+++.|..-.- ..++.+...
T Consensus 125 ~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~--~~~d~~~i-~avr~~~----g~~~~l~vDaN---~~w~~~~A~ 194 (382)
T PRK14017 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRK--VDAAVARV-AAVREAV----GPEIGIGVDFH---GRVHKPMAK 194 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHH--HHHHHHHH-HHHHHHh----CCCCeEEEECC---CCCCHHHHH
Confidence 456667778888999998865210 000000 00002222 3343322 13555555542 235555433
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccc
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (367)
+ -+++|. .+++.++-.|-. .+-++.+.+|+++..+. ..|=|.++...+..+++. .-++++|+..+
T Consensus 195 ~----~~~~l~--~~~~~~iEeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~ 260 (382)
T PRK14017 195 V----LAKELE--PYRPMFIEEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLS 260 (382)
T ss_pred H----HHHhhc--ccCCCeEECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCcc
Confidence 2 233342 245666666532 12257788888887776 666777888888888664 24788887765
Q ss_pred cccCCcchhcHHHHHHHhCCeEEeccc
Q 017732 228 LIYRKPEENGVKAACDELGITLIAYCP 254 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gi~via~~p 254 (367)
.+---.+-..+.+.|+++||.++..+.
T Consensus 261 ~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 261 HAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 542111122489999999999997654
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=50.32 E-value=1.5e+02 Score=24.76 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=69.7
Q ss_pred HHHHHHHHHH-HCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHH
Q 017732 76 AAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (367)
Q Consensus 76 ~~~~~l~~A~-~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~S 154 (367)
...+++..++ +.|+..+.+.-.-.. |+++-.++++.. +-+.||+-- ......-..+-+-
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~~tp---------~e~v~aA~~~dv-----~vIgvSsl~------g~h~~l~~~lve~ 86 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLFQTP---------EEAVRAAVEEDV-----DVIGVSSLD------GGHLTLVPGLVEA 86 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCcCCH---------HHHHHHHHhcCC-----CEEEEEecc------chHHHHHHHHHHH
Confidence 3456788877 789998876654443 999999987753 334444443 3356677788889
Q ss_pred HHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHH
Q 017732 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 210 (367)
|+..|.+.+= ++.--. .+.++ +.+|++.|--+.++-..--.+.+..+..
T Consensus 87 lre~G~~~i~-v~~GGv--ip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 87 LREAGVEDIL-VVVGGV--IPPGD----YQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred HHHhCCcceE-EeecCc--cCchh----HHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 9999998544 233222 12222 6778999999999886644444444443
No 109
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.84 E-value=2.8e+02 Score=27.76 Aligned_cols=104 Identities=22% Similarity=0.178 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
|+.|-+++.+...+++.+-++|.|-+-. ..-.+.+..-+++.-++.+ +.++.++.|+... ...++++|-
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~~---~lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCVP---GLIGDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChH---HHhcCCHHHHHHHHHHHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 8888888877554443566788777742 2222333333333333343 5788889887522 233444444
Q ss_pred HHHH-------------cCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 185 DAVE-------------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 185 ~l~~-------------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
++.. .+.|--||-.+.. ..+.++.+.++..|+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gl~v~ 227 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNVA-GEFWHVKPLLEKLGIRVL 227 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCCc-ccHHHHHHHHHHcCCeEE
Confidence 3321 3567788855432 233344444555665443
No 110
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.69 E-value=2.2e+02 Score=26.41 Aligned_cols=131 Identities=8% Similarity=0.021 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHCCCCeEeCCCCc------C-CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCC-CCCCCH
Q 017732 73 KMKAAKAAFDTSLDNGITFFDTAEVY------G-SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGR 144 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~DTA~~Y------g-~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~-~~~~~~ 144 (367)
+.++..++...-.+.||..||...-- + .+. ..++.+.++.+..+ +.++...+..-.. .+..-|
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-----~~~e~i~~~~~~~~----~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-----DPWERLRELRKAMP----NTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-----CHHHHHHHHHHhCC----CCceehhcccccccCccCCC
Confidence 34677778778889999999986311 0 011 12455544443322 3344433332110 011123
Q ss_pred HH-HHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEee-----cCCCHHHHHHHHHHHHhcCC
Q 017732 145 QS-VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-----SNYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 145 ~~-i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGv-----S~~~~~~l~~~~~~~~~~~~ 217 (367)
.. .+..++.+. ..++|.+-++. +. .+.+.+.+.++.+|+.|+.-...+ +.++++.+.++.+.+...|.
T Consensus 90 ~~~~~~di~~~~-~~g~~~iri~~-~~---~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 90 DDVVELFVEKAA-KNGIDIFRIFD-AL---NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred cHHHHHHHHHHH-HcCCCEEEEee-cC---ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 33 333344333 45666655533 11 236778888899999996544444 45677888877776666554
No 111
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.89 E-value=64 Score=28.78 Aligned_cols=76 Identities=28% Similarity=0.339 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEec
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q 223 (367)
...+.+.+++.++.++.+. +++ .+...+.++..+.++.+.++| +..|=++..++..+...++.+...++|+..+-
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEEe
Confidence 4568888999999998643 332 233355688889999999888 88888887777666666666777777765543
Q ss_pred c
Q 017732 224 V 224 (367)
Q Consensus 224 ~ 224 (367)
.
T Consensus 88 ~ 88 (257)
T PF13407_consen 88 S 88 (257)
T ss_dssp S
T ss_pred c
Confidence 3
No 112
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=48.08 E-value=7.5 Score=37.49 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=34.7
Q ss_pred cCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccc-cCCcchhcHHHHHHHhCCe
Q 017732 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI-YRKPEENGVKAACDELGIT 248 (367)
Q Consensus 189 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~-~~~~~~~~~~~~~~~~gi~ 248 (367)
-|+|||+||--++++.+.++...-+ .-++.+-+..++ ++... .+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~DP--~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHDP--AVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCCH--HHHHHHHHcCCc
Confidence 4999999999999999988755422 123333333332 33221 378888888876
No 113
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.02 E-value=2.7e+02 Score=26.96 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHHHc-CC---ccEEeec--CCCHHHHHHHHHHHHhcCCCeeEeccccccccCC-----cch--hcHHH
Q 017732 174 WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK-----PEE--NGVKA 240 (367)
Q Consensus 174 ~~~~~~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~-----~~~--~~~~~ 240 (367)
++.+++.+++.+..++ |+ +-|+=+. |.+++++.++.+.++ +.++.++-++||+.... ..+ ..+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 4678888888877543 32 1233222 568888888887764 34678888999985432 111 14667
Q ss_pred HHHHhCCeEEeccccccc
Q 017732 241 ACDELGITLIAYCPIAQG 258 (367)
Q Consensus 241 ~~~~~gi~via~~pl~~G 258 (367)
..+++||.+......|..
T Consensus 301 ~L~~~gi~~tiR~~~G~d 318 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQD 318 (344)
T ss_pred HHHHCCceEEEECCCCCc
Confidence 778899999998888754
No 114
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=47.72 E-value=2.2e+02 Score=25.97 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=62.5
Q ss_pred HHHHHHcCCccEEee--cCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccc
Q 017732 183 LGDAVEQGLVKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (367)
Q Consensus 183 L~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l 260 (367)
|.+..++|+. -+|+ ..-++..++.+ ...|..+.++-+++++++..... .++..++..|+.++.+-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~----~~~g~D~v~iDlEH~~~~~~~~~-~~~~a~~~~g~~~~VRv~~~~--- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEIC----AGAGFDWLLIDGEHAPNDVRTIL-SQLQALAPYPSSPVVRPAIGD--- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHH----HhcCCCEEEEeccCCCCCHHHHH-HHHHHHHhcCCCcEEECCCCC---
Confidence 3444556775 3444 33344444433 33456777778888887654332 366666667777776543321
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhCC
Q 017732 261 TGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALGW 339 (367)
Q Consensus 261 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~~ 339 (367)
+ .-++.+|..+.- .++|-..+++++++.+++..+
T Consensus 74 -------------------------------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -------------------------------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -------------------------------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 145667776633 678888888888888888765
No 115
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.61 E-value=2.5e+02 Score=27.15 Aligned_cols=172 Identities=13% Similarity=0.102 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHHH---CCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccC--CCCCCcEEEEeccCCCCCCCCHHH
Q 017732 72 RKMKAAKAAFDTSLD---NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ--RDPEVEVTVATKFAALPWRLGRQS 146 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~---~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~--~~~R~~~~I~tK~g~~~~~~~~~~ 146 (367)
++.++..+.+..+.+ .+++.+ -+.|.|+.. .+-+.+-++++.... ....-.+.|+| +|. .+.
T Consensus 129 lt~~EIv~qv~~~~~~~~~~~~~I---vfmGmGEPl---ln~~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~ 195 (345)
T PRK14457 129 LKAHEIVDQVLTVQEDMQRRVSHV---VFMGMGEPL---LNIDEVLAAIRCLNQDLGIGQRRITVST-VGV------PKT 195 (345)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCEE---EEEecCccc---cCHHHHHHHHHHHhcccCCccCceEEEC-CCc------hhh
Confidence 455666665555543 233322 244555321 122334455555321 01123667777 432 222
Q ss_pred HHHHHHHHHHhcC-CCceeEEEEecCCC------------CChHHHHHHHHH-HHHcCC---ccEEeec--CCCHHHHHH
Q 017732 147 VLAALKDSLFRLG-LSSVELYQLHWAGI------------WGNEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRN 207 (367)
Q Consensus 147 i~~~l~~SL~~L~-~dyiDl~~lH~p~~------------~~~~~~~~~L~~-l~~~G~---ir~iGvS--~~~~~~l~~ 207 (367)
+++-.+.-+.+|+ .+....+-||.+++ ++.+++++++.+ +.+.|+ |+++=|. |.+.+++++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 3333333233332 24457788898765 236777877766 455563 4455454 457788888
Q ss_pred HHHHHHhcCCCeeEeccccccccCC----cchh---cHHHHHHHhCCeEEeccccccc
Q 017732 208 AYEKLKKRGIPLASNQVNYSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 208 ~~~~~~~~~~~~~~~q~~~n~~~~~----~~~~---~~~~~~~~~gi~via~~pl~~G 258 (367)
+.+.++.. +..++-++||++... +... .+.+..+++|+.+......|..
T Consensus 276 La~~l~~l--~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~d 331 (345)
T PRK14457 276 LANLLRGF--QSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLD 331 (345)
T ss_pred HHHHHhcC--CCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCc
Confidence 88876543 457888999987532 1111 3556677789999988777753
No 116
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=47.29 E-value=2.3e+02 Score=26.03 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEE-EecCCC--CChH-H---HHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHh
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNE-G---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~-lH~p~~--~~~~-~---~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 214 (367)
.+++.+.+..++.+ .-|.|+||+-- --+|+. .+.+ | +...++.+++.-.+ -+.+-+++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc---
Confidence 45666666666554 57899999932 223433 2222 2 55556666665222 388899999999998764
Q ss_pred cCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEecc
Q 017732 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
|.+ -+|-+ +... . .++++.++++|..++.+.
T Consensus 95 -G~~-iINsi--s~~~-~---~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 95 -GAD-IINDV--SGGQ-D---PAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred -CCC-EEEEC--CCCC-C---chhHHHHHHcCCcEEEEe
Confidence 332 23322 2221 1 148999999999999854
No 117
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=46.79 E-value=59 Score=32.76 Aligned_cols=80 Identities=9% Similarity=0.068 Sum_probs=59.3
Q ss_pred CCcEEEEeccCCCCC----------------CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHc
Q 017732 126 EVEVTVATKFAALPW----------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 126 R~~~~I~tK~g~~~~----------------~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~ 189 (367)
+-++|+++-+|.... ..++..| -+|+.+.|+|.+. .+.++.++..++.+++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~~------~~ldeal~~~~~a~~~ 223 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRI-------DKRLETKYCDEQT------DSLDEALARAEEAKAE 223 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHH-------HHHHhcCcceeEc------CCHHHHHHHHHHHHHc
Confidence 678999988876311 1234333 3588999999753 4689999999999999
Q ss_pred CCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe
Q 017732 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (367)
Q Consensus 190 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (367)
|+..+||+-..-++.+.++.+. ++.|+++
T Consensus 224 ~~~~SIg~~GNaadv~~~l~~r----~i~pDlv 252 (545)
T TIGR01228 224 GKPISIGLLGNAAEVLPELLKR----GVVPDVV 252 (545)
T ss_pred CCceEEEeeccHHHHHHHHHHc----CCCCCCc
Confidence 9999999998777777777553 4555554
No 118
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=46.78 E-value=72 Score=28.64 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEeCCCCcCCC
Q 017732 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSR 101 (367)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g 101 (367)
..+.+++.++++.|.+.|++-+=..++|-+|
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 3456899999999999999977666666554
No 119
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=46.78 E-value=89 Score=26.73 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCeeEeccccccccCC-----c---------chhcHHHHHHHhCCeEEeccccccccccCCCCCCC
Q 017732 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRK-----P---------EENGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (367)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~-----~---------~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~ 268 (367)
..++++.+.++..++.+..+....+..... . .-...++.|++.|+..+...+-..+..
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~-------- 98 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG-------- 98 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS--------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccc--------
Confidence 345556666666666654444433333311 0 012488899999999887654421000
Q ss_pred CCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017732 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (367)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 302 (367)
........++...+.++++.++|+++|+
T Consensus 99 ------~~~~~~~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 99 ------PEDDTEENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp ------TTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 1223446667777778888888888775
No 120
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=46.77 E-value=2.3e+02 Score=25.90 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEE-EecCCC--CC----hHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHh
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WG----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~-lH~p~~--~~----~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 214 (367)
.+.+.+.+..++.+ .-|-|+||+-. --+|+. .+ .+.+...++.+++.-.+ -+.+.+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~--- 95 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKA--- 95 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHh---
Confidence 45666776666554 57899999964 234443 11 23455666666665333 388999999999999776
Q ss_pred cCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccc
Q 017732 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (367)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~ 256 (367)
...-+| ..+....+ .++++.++++|..++.+..-+
T Consensus 96 --g~~iIN--dis~~~~~---~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 96 --GADIIN--DVSGGRGD---PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred --CCCEEE--eCCCCCCC---hHHHHHHHHcCCCEEEECcCC
Confidence 222222 22222211 248999999999999876443
No 121
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=45.97 E-value=2.2e+02 Score=25.61 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHcCCccEEeecCC-CHHHHHHHHHHHHhcCCCeeEecccccccc-CCcchhcHHHHHHHhCCeEEecc
Q 017732 176 NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIY-RKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~~gi~via~~ 253 (367)
.++..++|..|+ +.+|..... +..|...+-..|+..|.+. |.|+- ++++ +++...-+.|..++.-+
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~------~~PLWg~d~~--ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV------YAPLWGRDPE--ELLEEMVEAGFEAIIVA 142 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE------eecccCCCHH--HHHHHHHHcCCeEEEEE
Confidence 556667777776 666655443 5567777777787777542 33433 3333 47887888888877777
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHH
Q 017732 254 PIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (367)
Q Consensus 254 pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 305 (367)
.-+.|+-. ...++.++. +.++.++.+.++||+.|+
T Consensus 143 Vsa~gL~~----------~~lGr~i~~-------~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 143 VSAEGLDE----------SWLGRRIDR-------EFLEELKSLNRRYGIHPA 177 (223)
T ss_pred EeccCCCh----------HHhCCccCH-------HHHHHHHHHHHhcCCCcc
Confidence 77766421 011122222 345688888999988764
No 122
>PRK05414 urocanate hydratase; Provisional
Probab=45.79 E-value=65 Score=32.61 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=59.4
Q ss_pred CCcEEEEeccCCCCC----------------CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHc
Q 017732 126 EVEVTVATKFAALPW----------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 126 R~~~~I~tK~g~~~~----------------~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~ 189 (367)
+-++||++-+|.... ..++..| -+|+.+.|+|.+. .+.++.++..++.+++
T Consensus 166 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~~------~~Ldeal~~~~~a~~~ 232 (556)
T PRK05414 166 AGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRI-------DKRLRTGYLDEKA------DDLDEALALAEEAKAA 232 (556)
T ss_pred ceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHH-------HHHHhCCcceeEc------CCHHHHHHHHHHHHHc
Confidence 678999998886310 1234433 3588999999854 4689999999999999
Q ss_pred CCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe
Q 017732 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (367)
Q Consensus 190 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (367)
|+..+||+-..-++.+.++.+. ++.|+++
T Consensus 233 ~~~~SIg~~GNaadv~~~l~~~----~i~pDlv 261 (556)
T PRK05414 233 GEPLSIGLLGNAADVLPELVRR----GIRPDLV 261 (556)
T ss_pred CCceEEEEeccHHHHHHHHHHc----CCCCCcc
Confidence 9999999998777777777543 4555554
No 123
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.68 E-value=2.1e+02 Score=27.69 Aligned_cols=91 Identities=12% Similarity=0.058 Sum_probs=60.3
Q ss_pred EEEecCCC------------CChHHHHHHHHHHHHcC--C--ccEEeec--CCCHHHHHHHHHHHHhcCCCeeEeccccc
Q 017732 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (367)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G--~--ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (367)
+-+|.+++ .+.+++++++.+..+.+ + ++|+=+. |.+.+++.++.+.++.. +..++-++||
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn 288 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFN 288 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecC
Confidence 55787754 23567888887776654 2 3345444 45678888888887644 4567779999
Q ss_pred cccCC----cch---hcHHHHHHHhCCeEEeccccccc
Q 017732 228 LIYRK----PEE---NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 228 ~~~~~----~~~---~~~~~~~~~~gi~via~~pl~~G 258 (367)
+.... +.. ..+....+++||.+......|..
T Consensus 289 ~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~d 326 (349)
T PRK14463 289 EHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSD 326 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcc
Confidence 87531 111 13566778899999999888753
No 124
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=45.59 E-value=2.6e+02 Score=26.06 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH
Q 017732 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (367)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~ 150 (367)
.++.++..++++.+.+.|+..|.- .| |+..-...=.+++. .+++.. -.++.|.|-.- . + ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~-~l~~~g----~~~v~i~TNG~----l-----l-~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIR-RIKDYG----IKDVSMTTNGI----L-----L-EK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHH-HHHhCC----CceEEEEcCch----H-----H-HH
Confidence 467788999999999999988753 33 43211111122332 233322 13677777541 1 1 12
Q ss_pred HHHHHHhcCCCceeEEEEecCCC---------CChHHHHHHHHHHHHcCCc----cEEeecCCCHHHHHHHHHHHHhcCC
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~i----r~iGvS~~~~~~l~~~~~~~~~~~~ 217 (367)
.-+.|.+.|.+.|-+ -++..++ ...+.+++.++.+++.|.- ..+.+.+.+.+++.++++.+...++
T Consensus 100 ~~~~l~~~g~~~v~i-Sld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVNV-SLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEEE-EecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 333466667665442 2344332 1367888999999988842 2344454677788888887776654
Q ss_pred C
Q 017732 218 P 218 (367)
Q Consensus 218 ~ 218 (367)
.
T Consensus 179 ~ 179 (302)
T TIGR02668 179 I 179 (302)
T ss_pred E
Confidence 3
No 125
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=45.52 E-value=3.2e+02 Score=27.19 Aligned_cols=109 Identities=8% Similarity=0.015 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
|+.|-++++....+++.+=++|.|-+-.--..-+-+.+-+.+++-.. +..-+.++.++.|+... .+..+++|.
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p--~~~~~pvi~v~tpgf~g~~~~G~~~a~~al~ 153 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHP--QHKGTAVVTVNTPDFKGSLEDGYAAAVESII 153 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhcc--cccCCeEEEecCCCcCCchHHHHHHHHHHHH
Confidence 77777877765433334667787776421112233333333322110 01135788889887632 233444432
Q ss_pred -HHH--------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 185 -DAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 185 -~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
.+. +.++|--||-++..+..+.++.+.++..|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 154 EAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred HHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 222 245677778776655666666666676676553
No 126
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.33 E-value=1.4e+02 Score=27.42 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEE
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQL 168 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~l 168 (367)
.++.+...+ +-+.|.++|+|++++-+.
T Consensus 18 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~ 44 (263)
T cd07943 18 QFTLEQVRA-IARALDAAGVPLIEVGHG 44 (263)
T ss_pred ecCHHHHHH-HHHHHHHcCCCEEEeecC
Confidence 455554444 444577888888888754
No 127
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.94 E-value=2.9e+02 Score=26.52 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCC
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA 95 (367)
.+.++..++++..-+.||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 345888899999899999999985
No 128
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=44.82 E-value=2.8e+02 Score=26.31 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHCCCCeEeC---CC-----CcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDT---AE-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DT---A~-----~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~ 145 (367)
+++..+..+.+.+.|+..||- ++ .||.|.+... .-+.+.+.++...... .+++-|+.|+.. .++. .+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~--~~~~~~eiv~avr~~~-~~~~pVsvKiR~-g~~~-~~ 148 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLK--DPELIYQGAKAMREAV-PAHLPVTVKVRL-GWDS-GE 148 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhc--CHHHHHHHHHHHHHhc-CCCcceEEEEEC-CCCC-ch
Confidence 466666777788899999993 22 2554422111 1344555554432111 124678888642 1221 12
Q ss_pred HHHHHHHHHHHhcCCCceeEEEEecCCC---CCh-HHHHHHHHHHHHcCCccEEeecCC-CHHHHHHHHHHHHhcCCCee
Q 017732 146 SVLAALKDSLFRLGLSSVELYQLHWAGI---WGN-EGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 146 ~i~~~l~~SL~~L~~dyiDl~~lH~p~~---~~~-~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~ 220 (367)
.. ..+-+.|+..|. |.+.+|.-.. ... .--|+...++++.=.|--||.... ++++..++++. ...+
T Consensus 149 ~~-~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~-----~g~D 219 (312)
T PRK10550 149 RK-FEIADAVQQAGA---TELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI-----TGCD 219 (312)
T ss_pred HH-HHHHHHHHhcCC---CEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc-----cCCC
Confidence 22 345555667775 5667785221 111 113677888888777888887775 77777776543 2466
Q ss_pred Eeccccc
Q 017732 221 SNQVNYS 227 (367)
Q Consensus 221 ~~q~~~n 227 (367)
.+++-=-
T Consensus 220 gVmiGRg 226 (312)
T PRK10550 220 AVMIGRG 226 (312)
T ss_pred EEEEcHH
Confidence 6665433
No 129
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.21 E-value=62 Score=29.43 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=47.9
Q ss_pred CCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHH----HHCCCCeEeCCC--CcCCCCCCCCCchHHHHHHH
Q 017732 43 GSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS----LDNGITFFDTAE--VYGSRASFGAINSETLLGRF 116 (367)
Q Consensus 43 ~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A----~~~Gi~~~DTA~--~Yg~g~s~~~~~sE~~lG~a 116 (367)
.||+.+|.++|...+--. +++ .++...+++.++++.| .+.|||.|--|. .|=.... |+...++
T Consensus 65 etgv~ipSmClSaHRRfP--fGS---~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d------~eT~~rF 133 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP--FGS---KDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD------EETRQRF 133 (287)
T ss_pred HhCCCccchhhhhhccCC--CCC---CCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC------HHHHHHH
Confidence 479999999999875211 122 2344456776666655 578999998774 2322222 5555666
Q ss_pred HHhccCC---CCCCcEEEEecc
Q 017732 117 IKERKQR---DPEVEVTVATKF 135 (367)
Q Consensus 117 l~~~~~~---~~R~~~~I~tK~ 135 (367)
+.+.... ..+-.|.++--+
T Consensus 134 i~g~~~a~~lA~~aqV~lAvEi 155 (287)
T COG3623 134 IEGLKWAVELAARAQVMLAVEI 155 (287)
T ss_pred HHHHHHHHHHHHhhccEEEeee
Confidence 5543110 024567777666
No 130
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=44.17 E-value=1.5e+02 Score=28.07 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCc--chhcHHHHHHHhCCeEEeccccccccccCCCCCC
Q 017732 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQ 267 (367)
Q Consensus 190 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~--~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~ 267 (367)
.++-.+-=.+.+.+.+.++.+.++... +.+.-..+|=++... .+..+.+++++.++-++. +|.-+.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~--~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVV-----Gg~~Ss----- 223 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERF--PEIQGPPKDDICYATQNRQEAVKELAPQADLVIVV-----GSKNSS----- 223 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhC--cCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEE-----CCCCCc-----
Confidence 445555555677788888877765432 111111233333221 122477777777776664 221110
Q ss_pred CCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Q 017732 268 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 334 (367)
Q Consensus 268 ~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl 334 (367)
+ -.+|.++|.+++. +..++-..|+.....|.+..|+|+|+.+.+.+
T Consensus 224 --------------N-------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 224 --------------N-------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred --------------c-------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 0 1267788887763 78899999997666568999999999765544
No 131
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=44.16 E-value=2.2e+02 Score=24.85 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=25.2
Q ss_pred ceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHH
Q 017732 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (367)
Q Consensus 162 yiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~ 204 (367)
.+|.++||..+. .+..+.+.+......++.+|++.+....
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 367889998642 2334444443345688999999875433
No 132
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=44.00 E-value=3.1e+02 Score=26.52 Aligned_cols=154 Identities=9% Similarity=-0.039 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
+.++..+.++.+.+.|++.|=.- .++...- ....+.+ +++++.- -+++.|.--.. ..++.+...+ +-
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~---~~di~~i-~~vR~~~----G~~~~l~vDan---~~~~~~~A~~-~~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV---RRDLKAC-LAVREAV----GPDMRLMHDGA---HWYSRADALR-LG 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH---HHHHHHH-HHHHHHh----CCCCeEEEECC---CCcCHHHHHH-HH
Confidence 44667778888899999988652 1211000 0002222 3344322 13444444332 2345554333 22
Q ss_pred HHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCC-HHHHHHHHHHHHhcCCCeeEecccccccc
Q 017732 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (367)
Q Consensus 153 ~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (367)
+.|+.+ ++.++-.|- ...+ ++.+.+|+++-.|. ..|=+-++ ..++.++++. .-++++|+..+..-
T Consensus 210 ~~l~~~-----~l~~iEeP~--~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~G 276 (368)
T cd03329 210 RALEEL-----GFFWYEDPL--REAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVG 276 (368)
T ss_pred HHhhhc-----CCCeEeCCC--Cchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccC
Confidence 233333 444555543 2222 47777888876665 23334456 7777777654 24788888766542
Q ss_pred CCcchhcHHHHHHHhCCeEEec
Q 017732 231 RKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~gi~via~ 252 (367)
--.+-..+...|+++|+.++..
T Consensus 277 Git~~~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 277 GITGAMKTAHLAEAFGLDVELH 298 (368)
T ss_pred CHHHHHHHHHHHHHcCCEEEEE
Confidence 2112224899999999999764
No 133
>PRK06740 histidinol-phosphatase; Validated
Probab=43.74 E-value=3e+02 Score=26.34 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCCC-----C-------------hHHHHHHHHHHHHcCCccEEeec------CCC---
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGIW-----G-------------NEGFIDGLGDAVEQGLVKAVGVS------NYS--- 201 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~~-----~-------------~~~~~~~L~~l~~~G~ir~iGvS------~~~--- 201 (367)
..+++.|+....||+ +.-+|+.+.. . .....+.+.++.+.|++..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 356666777778887 7777874310 0 12356778888999999888722 111
Q ss_pred ---HHHHHHHHHHHHhcCCCeeEecc-cc--ccccCCcchhcHHHHHHHhCCeEE
Q 017732 202 ---EKRLRNAYEKLKKRGIPLASNQV-NY--SLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 202 ---~~~l~~~~~~~~~~~~~~~~~q~-~~--n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
...++++++.+...+..+.+|-- .+ ...+.-+. ..+++.|++.|+.++
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~-~~il~~~~e~Gv~~t 288 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPS-PLFLQVLAKHEVPIT 288 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcC-HHHHHHHHHCCCeEE
Confidence 24677777777778877777753 11 11111121 148999999999865
No 134
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=43.52 E-value=5e+02 Score=28.80 Aligned_cols=109 Identities=12% Similarity=-0.005 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhc-CCCceeEEEEecCCCCC--h---HHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWG--N---EGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L-~~dyiDl~~lH~p~~~~--~---~~~~~~L 183 (367)
|+.|-++|+....+++.+=|+|.|-+.. ..--+.|..-+++.-++. ...-+.++.++.|+... . ...++++
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~~---eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~ai 632 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGLT---ETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAI 632 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchH---hhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHH
Confidence 7777777776443333466778877742 222233333333322221 01236899999998743 2 2333333
Q ss_pred H-HH-----HHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeE
Q 017732 184 G-DA-----VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 184 ~-~l-----~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
. .+ +..++|--||-++..+..++++.+.++..|+.+.+
T Consensus 633 v~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 633 VATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 2 22 23567888876666567777787778877776543
No 135
>PLN02444 HMP-P synthase
Probab=43.42 E-value=2e+02 Score=29.63 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
+.+.+.+...|++..+ +-+|.+-+|.- -.++.++.++ + |..||-+-...-+..++..-
T Consensus 296 ~lt~d~~~d~ieeQae----qGVDfmTIH~G------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~-------- 353 (642)
T PLN02444 296 NLTWEVFRETLIEQAE----QGVDYFTIHAG------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAY-------- 353 (642)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChh------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHc--------
Confidence 3556666666665554 44566777762 2445555554 3 66777766666665554321
Q ss_pred EeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCC
Q 017732 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (367)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~ 264 (367)
-.=|++..... ++++.|++++|.+ .||.|+--|..
T Consensus 354 ---~kENPlYe~FD--~ileI~k~YDVtl----SLGDGLRPG~i 388 (642)
T PLN02444 354 ---HKENFAYEHWD--DILDICNQYDIAL----SIGDGLRPGSI 388 (642)
T ss_pred ---CCcCchHHHHH--HHHHHHHHhCeee----eccCCcCCCcc
Confidence 12344444333 4999999999997 57877655443
No 136
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=42.87 E-value=3.1e+02 Score=26.29 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCC---CC---------CCCchHHHHHHHHHhccCCCCCCcEEEEeccCCC
Q 017732 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRA---SF---------GAINSETLLGRFIKERKQRDPEVEVTVATKFAAL 138 (367)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~---s~---------~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~ 138 (367)
.++.+.-.++.++|-+.|+-+|=|--.+..-. ++ +-.....+|-...+. -+.+.++|=.
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~------~kPiIlSTGm--- 156 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKK------GKPIILSTGM--- 156 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhc------CCCEEEEccc---
Confidence 34567788899999999999886643332100 00 000113333322222 2466776655
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC--hH-HHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHH
Q 017732 139 PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NE-GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 139 ~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~--~~-~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (367)
.+-+.+.++++...+ -|.. |+.+||+...++ .+ --+..|-.|++.= ---||+|.|+...+.-+...
T Consensus 157 ---a~~~ei~~av~~~r~-~g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 157 ---ATIEEIEEAVAILRE-NGNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred ---ccHHHHHHHHHHHHh-cCCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 346667777765444 4433 999999966533 22 2345555554443 34599999988755555443
No 137
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.83 E-value=1.4e+02 Score=25.77 Aligned_cols=85 Identities=27% Similarity=0.348 Sum_probs=54.0
Q ss_pred HHHhcCCCc----eeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccc
Q 017732 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (367)
Q Consensus 154 SL~~L~~dy----iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (367)
.|++.|+.- +|-=++-|..+....++.+.++++++.|. +-+=+||.+...+..+.+. .++++ + |-..
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~---l~v~f--i---~~A~ 92 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEK---LGVPF--I---YRAK 92 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhh---cCCce--e---eccc
Confidence 355566432 35556666666678899999999999996 4455999998888877543 22222 1 1112
Q ss_pred cCCcchhcHHHHHHHhCCeE
Q 017732 230 YRKPEENGVKAACDELGITL 249 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~gi~v 249 (367)
.+....+..++++.++..
T Consensus 93 --KP~~~~fr~Al~~m~l~~ 110 (175)
T COG2179 93 --KPFGRAFRRALKEMNLPP 110 (175)
T ss_pred --CccHHHHHHHHHHcCCCh
Confidence 222335777888776653
No 138
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=42.47 E-value=3.8e+02 Score=27.17 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCCccEEeecC----CCHHHHHHHHHHHHhcC-CCee-EeccccccccCCcchhcHHHHHHHhCCe
Q 017732 175 GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRG-IPLA-SNQVNYSLIYRKPEENGVKAACDELGIT 248 (367)
Q Consensus 175 ~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~~l~~~~~~~~~~~-~~~~-~~q~~~n~~~~~~~~~~~~~~~~~~gi~ 248 (367)
+.+.+++.++.|+++-.++.+-+.. .+...+.++.+.....+ .++. ..+.+.+.+.+.. ++++..++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~---ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDA---DILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCH---HHHHHHHHhCCc
Confidence 3577888888887765577766542 24455556655544333 2221 1233333333222 478888888876
Q ss_pred EEec
Q 017732 249 LIAY 252 (367)
Q Consensus 249 via~ 252 (367)
.+..
T Consensus 300 ~v~i 303 (497)
T TIGR02026 300 HISL 303 (497)
T ss_pred EEEE
Confidence 5543
No 139
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=42.43 E-value=3.4e+02 Score=26.62 Aligned_cols=152 Identities=10% Similarity=-0.006 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHH-CCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHH
Q 017732 73 KMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (367)
Q Consensus 73 ~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l 151 (367)
++++..+.++.+++ .|++.|=.-. |.... ..-.+.| +++++.. .++.|..-.. ..++.+...+-
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~---~~di~~v-~avRea~-----~~~~l~vDaN---~~w~~~~A~~~- 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPG---EEEIEAV-KALAEAF-----PGARLRLDPN---GAWSLETAIRL- 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCH---HHHHHHH-HHHHHhC-----CCCcEEEeCC---CCcCHHHHHHH-
Confidence 34556666666665 6999885421 21100 0001222 3343322 1344544442 23556544433
Q ss_pred HHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEecccccccc
Q 017732 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (367)
Q Consensus 152 ~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (367)
+++|. + ++.++-.|-. -++.+.+|++...+- ..|-|.++..++.++++. .-++++|......-
T Consensus 233 ---~~~l~-~--~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~G 296 (395)
T cd03323 233 ---AKELE-G--VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWG 296 (395)
T ss_pred ---HHhcC-c--CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeecccccc
Confidence 34554 2 6667776643 477888888887666 666666777777777653 24788887765432
Q ss_pred CCcchhcHHHHHHHhCCeEEecccc
Q 017732 231 RKPEENGVKAACDELGITLIAYCPI 255 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~gi~via~~pl 255 (367)
--.+-..+...|+++|+.+...+..
T Consensus 297 Git~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 297 GMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCc
Confidence 1112224899999999999887654
No 140
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=42.34 E-value=2.6e+02 Score=25.14 Aligned_cols=145 Identities=10% Similarity=0.060 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~S 154 (367)
....++++.|.+.|+..|=.+++...... .+. ..+.+++ =+|+.-.-+. ....+.+..-
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~~~~~---- 74 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSKLRGL---- 74 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHHHHHH----
Confidence 45678999999999998866555332100 011 1111211 1233322221 1234433333
Q ss_pred HHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCC---CHHHHHHHHHHHHhcCCCeeEeccccccccC
Q 017732 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (367)
+++. .+.+|++.+| |. .+++. ..+.+.+.|.-||--.. ....-+.++..+...++-+. +.++.+..
T Consensus 75 ~~~~-~~~~d~v~v~-~~---~~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lE---In~s~~~~ 143 (237)
T PRK00912 75 VGKF-RKKVDVLAVH-GG---DEKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIE---FNLRDILK 143 (237)
T ss_pred HHhc-cCcccEEEEe-CC---CHHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEE---EEchHhhh
Confidence 3332 2356888888 22 12222 35788899988876532 11112344455555554444 34443321
Q ss_pred Cc--------ch-hcHHHHHHHhCCeEEe
Q 017732 232 KP--------EE-NGVKAACDELGITLIA 251 (367)
Q Consensus 232 ~~--------~~-~~~~~~~~~~gi~via 251 (367)
.. .. ..++..|++.|+.++.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 11 00 2489999999988764
No 141
>PLN02363 phosphoribosylanthranilate isomerase
Probab=42.26 E-value=89 Score=28.82 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=50.0
Q ss_pred eccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEe-cCCCCChHHHHHHHHHHHHcCCccEEeec-CCCHHHHHHHHH
Q 017732 133 TKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYE 210 (367)
Q Consensus 133 tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~ 210 (367)
.|++. -.+.+.++... ++|.||+=+++.. .|...+.+..-+.... .....++.+||- +-+++.+.++.+
T Consensus 49 VKICG---it~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~~ 119 (256)
T PLN02363 49 VKMCG---ITSARDAAMAV-----EAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAAD 119 (256)
T ss_pred EEECC---CCcHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHHH
Confidence 46653 24566666655 5999999997543 3333444444333333 332246679985 668888877766
Q ss_pred HHHhcCCCeeEecccc
Q 017732 211 KLKKRGIPLASNQVNY 226 (367)
Q Consensus 211 ~~~~~~~~~~~~q~~~ 226 (367)
. ..++++|+.-
T Consensus 120 ~-----~~ld~VQLHG 130 (256)
T PLN02363 120 S-----SDLELVQLHG 130 (256)
T ss_pred h-----cCCCEEEECC
Confidence 5 5789999964
No 142
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=42.10 E-value=70 Score=27.54 Aligned_cols=63 Identities=24% Similarity=0.201 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCc----eeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHH
Q 017732 147 VLAALKDSLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (367)
Q Consensus 147 i~~~l~~SL~~L~~dy----iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~ 210 (367)
.+..++..++++|.+. ++.+.-.+.......++.+.|+.|+++| ++-.-+||.+...+...++
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVK 127 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHH
Confidence 3455666666666541 1111111111123456788899999988 4555588887777666544
No 143
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=41.83 E-value=1.8e+02 Score=28.19 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=59.0
Q ss_pred EEEEecCCC------------CChHHHHHHHHHHHH-cCC---ccEEeec--CCCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 165 LYQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~l~~-~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
.+-||.+++ .+.+++++++.++.+ .|+ |+++=+. |.+.+++.++.+.++. .++.++-++|
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPy 295 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPW 295 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEec
Confidence 366898764 236788888877654 442 2344333 3466888888777654 3467778899
Q ss_pred ccccCCc----chh---cHHHHHHHhCCeEEeccccccc
Q 017732 227 SLIYRKP----EEN---GVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 227 n~~~~~~----~~~---~~~~~~~~~gi~via~~pl~~G 258 (367)
|+..... ... .+.+..+++|+.++.....|.-
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~d 334 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDD 334 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcc
Confidence 9865321 111 2556677789999998887754
No 144
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.50 E-value=1.9e+02 Score=26.35 Aligned_cols=191 Identities=14% Similarity=0.184 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCC-CChHHHHHHH-HHHHHcCCccEEeecCC-----CHHHHHHHHHHHHhcCCCeeE
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL-GDAVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L-~~l~~~G~ir~iGvS~~-----~~~~l~~~~~~~~~~~~~~~~ 221 (367)
+.+++-|+-.+ +|||.+-+-|-.. .-++++++.. +-+++-|.--+.| .++ ....+++.++.|+..| |++
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lG--f~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELG--FEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcC--CCE
Confidence 46777888888 8999999988433 2233444444 4445566555666 211 1234555666666554 677
Q ss_pred eccccccccCCcch-hcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHH--------
Q 017732 222 NQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNR-------- 292 (367)
Q Consensus 222 ~q~~~n~~~~~~~~-~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-------- 292 (367)
+.+.-..++-..++ ..+++.++++|..+..= +|. | . ++.. ...-...+.++....+++
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~E--vG~-----K-~----~~~~-~~~~~~~~i~~~~~~LeAGA~~ViiE 154 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVLSE--VGK-----K-S----PEKD-SELTPDDRIKLINKDLEAGADYVIIE 154 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEecc--ccc-----c-C----Cccc-ccCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 66665555433322 25888888888887741 221 0 0 0000 011112222222221211
Q ss_pred HHH------HHHHcCCCHHHHHHHHHhcCCCe-EEecCCCCHHHHHHHHhhhC----C-CCCHHHHHHHHHhHhccC
Q 017732 293 IKE------LGENYSKTSTQVGLNWLLAQDNV-VPIPGAKNAEQAAEFAGALG----W-RLTDEEVNELRSMASEIK 357 (367)
Q Consensus 293 l~~------ia~~~~~s~~q~al~~~l~~~~v-~vi~g~~~~~~l~enl~a~~----~-~L~~e~~~~l~~~~~~~~ 357 (367)
-++ +.+.-|---.++.-..+-+-| . -+|--+.+++|....+..+. . ..+.+|+=.|+.+...++
T Consensus 155 arEsg~~~Gi~~~~g~~r~d~v~~i~~~l~-~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~LE~LR~GLr 230 (237)
T TIGR03849 155 GRESGKNIGLFDEKGNVKEDELDVLAENVD-INKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLETLRRGLR 230 (237)
T ss_pred ehhcCCCcceeCCCCCCchHHHHHHHhhCC-hhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhcccc
Confidence 011 111111112222222222234 4 67777888888888887552 2 467888888888876655
No 145
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=41.44 E-value=1.7e+02 Score=27.36 Aligned_cols=110 Identities=13% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCc--chhcHHHHHHHhCCeEEeccccccccccCCCCCC
Q 017732 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQ 267 (367)
Q Consensus 190 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~--~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~ 267 (367)
.++-.+-=.+.+.+.+.++.+.++.....+ .+ +|=++..- .+..+.+++++-++-++. +|.-+.
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~---~v-~~TIC~aT~~RQ~a~~~La~~vD~miVV-----Gg~~Ss----- 222 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKEL---VF-FNTICSATKKRQESAKELSKEVDVMIVI-----GGKHSS----- 222 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCccc---cc-CCCcchhhhhHHHHHHHHHHhCCEEEEe-----cCCCCc-----
Confidence 444444445667778877777765432222 22 33333211 122477777777777665 221110
Q ss_pred CCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Q 017732 268 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 334 (367)
Q Consensus 268 ~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl 334 (367)
+ -.+|.++|.+++. ++.++-..|+.....|.+..|+|+|+.+-+.+
T Consensus 223 --------------N-------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 223 --------------N-------TQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred --------------c-------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 0 1267788887763 78888889998776568999999999876554
No 146
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=41.43 E-value=1.3e+02 Score=24.97 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=42.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcC--CCceeEEEEecCCC-CChHHHHHHHHHHHH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI-WGNEGFIDGLGDAVE 188 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~--~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~ 188 (367)
|=-+.|+-|+|. ...++.|++.+.++++.+. ....|++++..... .+..++.+.|..+.+
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIP 109 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHH
Confidence 667888889874 5678889999988888764 34689999988654 344555555554443
No 147
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=41.16 E-value=2.4e+02 Score=26.70 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCc--cEEeecCCCHHHHH
Q 017732 181 DGLGDAVEQGLV--KAVGVSNYSEKRLR 206 (367)
Q Consensus 181 ~~L~~l~~~G~i--r~iGvS~~~~~~l~ 206 (367)
+.|+.|++.|.- -++|+=+.+.+.++
T Consensus 118 e~L~~l~~aG~~~~v~iG~ES~~d~~L~ 145 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGLETANDRIRE 145 (313)
T ss_pred HHHHHHHHcCCCEEEEEecCcCCHHHHH
Confidence 455556777863 47888777766653
No 148
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=40.98 E-value=86 Score=27.87 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=48.7
Q ss_pred eccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEe-cCCCCChHHHHHHHHHHHHcCCccEEeec-CCCHHHHHHHHH
Q 017732 133 TKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYE 210 (367)
Q Consensus 133 tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~ 210 (367)
-|++. -.+.+.++... .+|.||+=+.+.. .|...+.+..-+....+ .+.+..+||. +-+++.+.++.+
T Consensus 5 vKICG---i~~~eda~~~~-----~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~ 74 (210)
T PRK01222 5 VKICG---ITTPEDAEAAA-----ELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVE 74 (210)
T ss_pred EEECC---CCcHHHHHHHH-----HcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHH
Confidence 45543 23455555543 6999999987533 33333343333333322 3568899987 557788877765
Q ss_pred HHHhcCCCeeEecccc
Q 017732 211 KLKKRGIPLASNQVNY 226 (367)
Q Consensus 211 ~~~~~~~~~~~~q~~~ 226 (367)
. ..++++|+.-
T Consensus 75 ~-----~~~d~vQLHg 85 (210)
T PRK01222 75 T-----VPLDLLQLHG 85 (210)
T ss_pred h-----cCCCEEEECC
Confidence 4 4689999964
No 149
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.96 E-value=2e+02 Score=27.68 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceeEE
Q 017732 140 WRLGRQSVLAALKDSLFRLGLSSVELY 166 (367)
Q Consensus 140 ~~~~~~~i~~~l~~SL~~L~~dyiDl~ 166 (367)
+.++.+.+.+ +-+.|.+.|+|+|.+-
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVT 45 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEee
Confidence 3455555444 4444777777777774
No 150
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=40.89 E-value=4.2e+02 Score=27.17 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=59.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC-CceeEEEEecCCCCC-----hHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~-dyiDl~~lH~p~~~~-----~~~~~~~L 183 (367)
++-|-++|+.....++.+=|+|+|-+.. ..--+.+..-+++.-+.... +-+++..+|.|+..+ .+..++++
T Consensus 127 ~~~L~e~I~~~~~~y~P~~I~V~tTC~~---evIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd~a~~ai 203 (515)
T TIGR01286 127 LKNMVDGLQNCYALYKPKMIAVSTTCMA---EVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHITGYDNMFKGI 203 (515)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHH---HHhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHHHHHHHHHHH
Confidence 7777788776544343466778777742 22233444444444444432 246899999998743 22333333
Q ss_pred HH-HH----------HcCCccEEe-ecCCCHHHHHHHHHHHHhcCCCeeE
Q 017732 184 GD-AV----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 184 ~~-l~----------~~G~ir~iG-vS~~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
.+ +. ..++|--|| ...+ +..++++.+.++..|+++.+
T Consensus 204 l~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 204 LEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 22 21 135677774 4333 45666666666666765443
No 151
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.52 E-value=1.9e+02 Score=28.09 Aligned_cols=83 Identities=8% Similarity=0.032 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHcCC----ccEEeec--CCCHHHHHHHHHHHHhcCCCeeEeccccccccCC----cch---hcHHHH
Q 017732 175 GNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK----PEE---NGVKAA 241 (367)
Q Consensus 175 ~~~~~~~~L~~l~~~G~----ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~----~~~---~~~~~~ 241 (367)
+.++++++++++.+++. |+|+=+. |.+.++++++.+.++.. +..++-++||++... +.. ..+.+.
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l--~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~ 321 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGI--KCHVNLIPVNPVPERDYVRTPKEDIFAFEDT 321 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC--CCcEEEEecCcCCCCCCcCCCHHHHHHHHHH
Confidence 35889999998877542 3344343 45668888888877543 367777899987632 111 135666
Q ss_pred HHHhCCeEEecccccccc
Q 017732 242 CDELGITLIAYCPIAQGA 259 (367)
Q Consensus 242 ~~~~gi~via~~pl~~G~ 259 (367)
++++|+.+......|..+
T Consensus 322 L~~~gi~v~ir~~~g~di 339 (356)
T PRK14455 322 LKKNGVNCTIRREHGTDI 339 (356)
T ss_pred HHHCCCcEEEeCCCCcch
Confidence 888999999887777543
No 152
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.38 E-value=3.5e+02 Score=26.37 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=61.6
Q ss_pred EEEEecCCC-------------CChHHHHHHHHH-HHHcC---CccEEeec--CCCHHHHHHHHHHHHhcCCCeeEeccc
Q 017732 165 LYQLHWAGI-------------WGNEGFIDGLGD-AVEQG---LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (367)
Q Consensus 165 l~~lH~p~~-------------~~~~~~~~~L~~-l~~~G---~ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (367)
.+-||.++. .+.+++++++.+ +++.| +|+++=+. |.+.+++.++.+.++.. ++.++-++
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~--~~~VnlIp 314 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF--FCKINLID 314 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC--CCeeEEee
Confidence 366787653 245788888875 45556 34455444 45667788888877643 45777889
Q ss_pred cccccCCcch-------hcHHHHHHHhCCeEEeccccccc
Q 017732 226 YSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 226 ~n~~~~~~~~-------~~~~~~~~~~gi~via~~pl~~G 258 (367)
||++...... ..+.+..+++|+.+......|.-
T Consensus 315 yn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 315 YNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTT 354 (368)
T ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcc
Confidence 9987653321 14667788899999998888753
No 153
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.37 E-value=3.1e+02 Score=26.59 Aligned_cols=170 Identities=18% Similarity=0.115 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHH---HHHH-C--CCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCC----CCCCcEEEEeccCCCCC
Q 017732 71 DRKMKAAKAAFD---TSLD-N--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR----DPEVEVTVATKFAALPW 140 (367)
Q Consensus 71 ~~~~~~~~~~l~---~A~~-~--Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~----~~R~~~~I~tK~g~~~~ 140 (367)
.++.++..+.+. ..++ . |++.++.--+-|.|+..- +-+.+-++++..... ....++.|+|-. .
T Consensus 129 nlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLl---n~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G-~--- 201 (354)
T PRK14460 129 NMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLL---NLDEVMRSLRTLNNEKGLNFSPRRITVSTCG-I--- 201 (354)
T ss_pred CCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccC---CHHHHHHHHHHHhhhhccCCCCCeEEEECCC-C---
Confidence 345566666653 3332 2 333244334456553311 223344566543210 011257777743 1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC------------CChHHHHHHHHHHHHcC-C---ccEEeec--CCCH
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQG-L---VKAVGVS--NYSE 202 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~------------~~~~~~~~~L~~l~~~G-~---ir~iGvS--~~~~ 202 (367)
.+ .++ -|...+...+++ -||.+++ .+.+++++++.+...+. + |+++=+. |.+.
T Consensus 202 ---~~----~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ 272 (354)
T PRK14460 202 ---EK----GLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSL 272 (354)
T ss_pred ---hH----HHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCH
Confidence 22 233 345556545554 5677654 24677888887654432 2 3344333 5577
Q ss_pred HHHHHHHHHHHhcCCCeeEeccccccccCCc----ch---hcHHHHHHHhCCeEEeccccccc
Q 017732 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EE---NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~---~~~~~~~~~~gi~via~~pl~~G 258 (367)
++++++.+.++.. +..++-++||+..... .. ..+.+..+++|+.+......|.-
T Consensus 273 ed~~~l~~~l~~~--~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~d 333 (354)
T PRK14460 273 EHARELVRLLSRT--KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQD 333 (354)
T ss_pred HHHHHHHHHHhcC--CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCc
Confidence 7888888877643 4567888999864321 11 13566777889999988887754
No 154
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=40.37 E-value=1.5e+02 Score=24.21 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=44.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC----CceeEEEEecCCC--CChHHHHHHHHHHHH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~----dyiDl~~lH~p~~--~~~~~~~~~L~~l~~ 188 (367)
|=-+.|+-|+|. ...+..|++.|.++++.+.. ...|++++-.+.. .+..++.+.|+.+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 567888888874 56788899999999887653 4589999998764 345666666666554
No 155
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=39.98 E-value=2.1e+02 Score=27.43 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHhhhCC
Q 017732 323 GAKNAEQAAEFAGALGW 339 (367)
Q Consensus 323 g~~~~~~l~enl~a~~~ 339 (367)
|-...+.+...++..++
T Consensus 229 GN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 229 GNAPLEVFVAVLDRLGW 245 (333)
T ss_pred cCccHHHHHHHHHhcCC
Confidence 33456666666665443
No 156
>PRK13753 dihydropteroate synthase; Provisional
Probab=39.64 E-value=3.2e+02 Score=25.54 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEE-ecCCC--CCh----HHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHh
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI--WGN----EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~l-H~p~~--~~~----~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 214 (367)
.+.+.+.+..++.+ .-|.|.||+=-- .+|.. .+. ..+...++.+++.+. -|.|-++.++.++++++.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a--- 95 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR--- 95 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc---
Confidence 35666666666654 467888888543 34543 222 234467888887753 489999999999988754
Q ss_pred cCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccc
Q 017732 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (367)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~ 256 (367)
|..+ +| ..+-+. .+ .+.+.+.+.+++++.+...+
T Consensus 96 -Gadi-IN--DVsg~~-d~---~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 96 -GVGY-LN--DIQGFP-DP---ALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred -CCCE-EE--eCCCCC-ch---HHHHHHHHcCCCEEEEecCC
Confidence 3333 22 112222 22 37888999999999877654
No 157
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.04 E-value=2.6e+02 Score=26.99 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=62.5
Q ss_pred EEEEecCCC------------CChHHHHHHHHHHHHcC--Ccc--EEeec--CCCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQG--LVK--AVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~l~~~G--~ir--~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
.+-||.|+. ++.+++++++.+..++. +|. |+=+. |.+.+++.++.+.++ +.+..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 477898764 34688888888865433 222 34343 668888888888765 34578889999
Q ss_pred ccccCC----c-ch--hcHHHHHHHhCCeEEecccccccc
Q 017732 227 SLIYRK----P-EE--NGVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 227 n~~~~~----~-~~--~~~~~~~~~~gi~via~~pl~~G~ 259 (367)
|+.... + .+ ..+.+..+++||.+......|.-+
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI 327 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDI 327 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 974331 1 11 146667788999999988877543
No 158
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.99 E-value=3e+02 Score=25.03 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=27.4
Q ss_pred cHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017732 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (367)
Q Consensus 237 ~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 302 (367)
..++.|++.|+.++....... +. . .-....+++..+.+.++.++|+++|+
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~------~~---~-------~~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDV------YY---E-------EKSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHhCCCEEEECCccc------cc---c-------cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 477788888888886421100 00 0 01133445555666667777777665
No 159
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=38.18 E-value=1.6e+02 Score=27.51 Aligned_cols=120 Identities=20% Similarity=0.280 Sum_probs=70.0
Q ss_pred HHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCc-chhcHHHHHHHhCCeEEecccccccccc
Q 017732 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-EENGVKAACDELGITLIAYCPIAQGALT 261 (367)
Q Consensus 183 L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~~gi~via~~pl~~G~l~ 261 (367)
++.|....++-.+-=.+.+.+.+.++.+.++... +..-..+.-.+++... .+..+.+.+++-++-++. | |.=+
T Consensus 147 ~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~-~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVV----G-g~nS 220 (280)
T TIGR00216 147 LENFKVEDLLGVVSQTTLSQEDTKEIVAELKARV-PQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVI----G-GKNS 220 (280)
T ss_pred HHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhC-CCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEE----C-CCCC
Confidence 4444334555555555667777777777665432 1011122222222211 123477777777766654 2 2111
Q ss_pred CCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Q 017732 262 GKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 334 (367)
Q Consensus 262 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl 334 (367)
.+ -.+|.++|.+++. +..++-..|+-....|.+..|+|+|+.+-+.+
T Consensus 221 -------------------sN-------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 221 -------------------SN-------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred -------------------ch-------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 01 1277888888763 78899999998776568999999999876543
No 160
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=37.91 E-value=1.7e+02 Score=23.12 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC---CceeEEEEecCCC--CChHHHHHHHHHHHHc
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~---dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (367)
|=-+.|+-|+|. ...+..+++.+.+.++.+.. ...|++++-.+.. .+..++.+.|..|.++
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 667888888874 56688888888888886643 3579999988764 4566777777776554
No 161
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.82 E-value=3.2e+02 Score=26.51 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=59.6
Q ss_pred EecCCC------------CChHHHHHHHHHHH-HcCC---ccEEeec--CCCHHHHHHHHHHHHhcCCCeeEeccccccc
Q 017732 168 LHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (367)
Q Consensus 168 lH~p~~------------~~~~~~~~~L~~l~-~~G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (367)
||.+++ ++.+++++++.++. +.|+ |+|+=+. |.+.++++++.+.++.. +..++-++||++
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIPyn~~ 303 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLILFNPH 303 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCCC
Confidence 788765 23467888887554 4443 3455444 45788888888877643 468888999987
Q ss_pred cCC----cchh---cHHHHHHHhCCeEEecccccccc
Q 017732 230 YRK----PEEN---GVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 230 ~~~----~~~~---~~~~~~~~~gi~via~~pl~~G~ 259 (367)
... +... .+.+..+++|+.+......|..+
T Consensus 304 ~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 304 EGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 532 2111 24556677899999888877543
No 162
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=37.77 E-value=1.7e+02 Score=27.38 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcc--hhcHHHHHHHhCCeEEeccccccccccCCCCCC
Q 017732 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE--ENGVKAACDELGITLIAYCPIAQGALTGKYTPQ 267 (367)
Q Consensus 190 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~ 267 (367)
+++-.+-=++++.+.+.++.+.++..... .....+|=++.... +..+.+++++-++-++. | |.
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~--~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVI----G-g~-------- 219 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPE--LEGPVFNTICYATQNRQEAARELAKEVDAMIVI----G-GK-------- 219 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTC--EE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEE----S--T--------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCcc--ccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEe----c-CC--------
Confidence 46777777788888888888877654322 22123344333211 22466667766655554 2 21
Q ss_pred CCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Q 017732 268 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 334 (367)
Q Consensus 268 ~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl 334 (367)
...+ -.+|.++|++++. ++.++-..|+-....|.+..|+|+|+.+-+.+
T Consensus 220 -----------~SsN-------T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 220 -----------NSSN-------TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -----------T-HH-------HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred -----------CCcc-------HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 0111 1378888998874 78999999999877668999999999877654
No 163
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.74 E-value=1.8e+02 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHhhhCC--CCCHHHHHHHHHhHhccCCC
Q 017732 323 GAKNAEQAAEFAGALGW--RLTDEEVNELRSMASEIKPV 359 (367)
Q Consensus 323 g~~~~~~l~enl~a~~~--~L~~e~~~~l~~~~~~~~~~ 359 (367)
|-...+++..++...+. .++-+.+..+.+..+.++..
T Consensus 233 GN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~~~ 271 (275)
T cd07937 233 SQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVRKK 271 (275)
T ss_pred CChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33456667767666544 46667777777666555443
No 164
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.47 E-value=1.7e+02 Score=25.95 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCcccccccccccc----cCCCCC--------CCCCCCchhhHHHHHHHHHHHHHCCCCeEe-CCCCcCCCCCCCCCchH
Q 017732 44 SDLKVTKLGVGAWS----WGDTSY--------WNNFQWDDRKMKAAKAAFDTSLDNGITFFD-TAEVYGSRASFGAINSE 110 (367)
Q Consensus 44 tg~~vs~lglGt~~----~g~~~~--------~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~D-TA~~Yg~g~s~~~~~sE 110 (367)
-|+.+|.+-||-+. .|...| -..+-..++++|++..+-..|-++|+.++- +|+.--+ |
T Consensus 92 ~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtd---------e 162 (268)
T KOG4175|consen 92 QGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTD---------E 162 (268)
T ss_pred cCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChH---------H
Confidence 37889988888663 111000 001122355667777776777777777664 4444433 3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC
Q 017732 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (367)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G 190 (367)
++ +.|.+.. ..=+|+.+.+|. ..+.+.+...+++.|.|.+--. .-
T Consensus 163 Rm--ell~~~a----dsFiYvVSrmG~---TG~~~svn~~l~~L~qrvrk~t--------------------------~d 207 (268)
T KOG4175|consen 163 RM--ELLVEAA----DSFIYVVSRMGV---TGTRESVNEKLQSLLQRVRKAT--------------------------GD 207 (268)
T ss_pred HH--HHHHHhh----cceEEEEEeccc---cccHHHHHHHHHHHHHHHHHhc--------------------------CC
Confidence 33 3343332 134566677663 3445556666665555554100 01
Q ss_pred CccEEeecCCCHHHHHHHHHH
Q 017732 191 LVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~~~ 211 (367)
+=-++|+.--.++++.+.-++
T Consensus 208 tPlAVGFGvst~EHf~qVgsv 228 (268)
T KOG4175|consen 208 TPLAVGFGVSTPEHFKQVGSV 228 (268)
T ss_pred CceeEeeccCCHHHHHhhhhh
Confidence 123566666667888777665
No 165
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=37.41 E-value=3.3e+02 Score=26.32 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=62.3
Q ss_pred CceeEEE-EecCCC------------CChHHHHHHHHHHHH-cCC---ccEEeec--CCCHHHHHHHHHHHHhc---CCC
Q 017732 161 SSVELYQ-LHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKR---GIP 218 (367)
Q Consensus 161 dyiDl~~-lH~p~~------------~~~~~~~~~L~~l~~-~G~---ir~iGvS--~~~~~~l~~~~~~~~~~---~~~ 218 (367)
.++|+.+ ||.++. ...+++++++.+..+ .|. |+++=+. |.+.++++++.+.++.. +..
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 3577754 677643 235667666666554 442 3344333 55777888888887754 224
Q ss_pred eeEeccccccccCC------cch---hcHHHHHHHhCCeEEeccccccc
Q 017732 219 LASNQVNYSLIYRK------PEE---NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 219 ~~~~q~~~n~~~~~------~~~---~~~~~~~~~~gi~via~~pl~~G 258 (367)
..++-++||.+... +.. ..+.+..+++|+.+......|.-
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 331 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSD 331 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 67888999986432 111 14667778889999988887754
No 166
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=37.34 E-value=4.2e+02 Score=26.13 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=56.7
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCCh---HH---HHH-
Q 017732 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGN---EG---FID- 181 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~---~~---~~~- 181 (367)
|+.|-+++++...+.|+ +=++|.|-+.. ..-.+.+..-+++.-++.+ -++++.+|.|+..+. .. ..+
T Consensus 72 ~~~L~~aI~~~~~~~p~p~~i~V~~tc~~---~liGdDi~~v~~~~~~~~~--~~~vi~v~tpgf~g~~~~~G~~~a~~a 146 (415)
T cd01977 72 EKKLKKNIIEAFKEFPDIKRMTVYTTCTT---ALIGDDIKAVAKEVMEELP--DVDIFVCNAPGFAGPSQSKGHHVLNIA 146 (415)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCch---hhhcCCHHHHHHHHHHhcC--CCeEEEEeCCCcCCcchhHHHHHHHHH
Confidence 77777888765443332 34777777742 2333444444444333443 267999999886331 11 112
Q ss_pred HHHHHH--------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCe
Q 017732 182 GLGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 182 ~L~~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.++.+. ++++|--||-.++ +.+++++.+.++..|+++
T Consensus 147 l~~~l~~~~~~~~~~~~~VNliG~~~~-~~d~~ei~~lL~~~Gl~v 191 (415)
T cd01977 147 WINQKVGTVEPEITSDYTINYIGDYNI-QGDTEVLQKYFERMGIQV 191 (415)
T ss_pred HHHHhhCcCCcCcCCCCcEEEEccCCC-cccHHHHHHHHHHcCCeE
Confidence 233333 2467888885443 344555555566666655
No 167
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=36.85 E-value=2.5e+02 Score=26.59 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=62.2
Q ss_pred HHhcCCCceeEEEEecCC------CCChHHHHHHHHHHHHcCCcc-EEeecCC---CHHHHHHHHHHHHhcCCCeeEecc
Q 017732 155 LFRLGLSSVELYQLHWAG------IWGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV 224 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~------~~~~~~~~~~L~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~~~~~~~~~~~~q~ 224 (367)
.++.|. |++.+|-.+ ..+..|..+.|+++.+.=+|- -||=|.. +++.++++.+.++...+..+
T Consensus 160 Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLa---- 232 (403)
T COG2069 160 VKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLA---- 232 (403)
T ss_pred HHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEee----
Confidence 456775 666666432 145789999999998887776 5676764 77889998887653322222
Q ss_pred ccccccCCcchhcHHHHHHHhCCeEEecccccc
Q 017732 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (367)
Q Consensus 225 ~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~ 257 (367)
.-|+ +-..+ .+.+.+.++|-.|++|+++.-
T Consensus 233 Sanl-dlDy~--~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 233 SANL-DLDYE--RIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cccc-ccCHH--HHHHHHHhcCceEEEeeccCh
Confidence 2222 11212 389999999999999988764
No 168
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.81 E-value=3.3e+02 Score=24.84 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=27.4
Q ss_pred cHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017732 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (367)
Q Consensus 237 ~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 302 (367)
..++.|++.|+.++.+.+...+ + ..-.+..+++..+.++.+-++|+++|+
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~~-----~-----------~~~~~~~~~~~~~~l~~l~~~A~~~GV 152 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDVY-----Y-----------EQANNETRRRFIDGLKESVELASRASV 152 (283)
T ss_pred HHHHHHHHcCCCEEEECCcccc-----c-----------cccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3678888889888864211000 0 001133344455556667777777665
No 169
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=36.40 E-value=3.4e+02 Score=24.87 Aligned_cols=26 Identities=4% Similarity=-0.083 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCCCC
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA~~ 97 (367)
.+.++..++++.-.+.||..|+....
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~ 42 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFP 42 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34588888999988999999998643
No 170
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=36.21 E-value=3.5e+02 Score=24.87 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=55.9
Q ss_pred HHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCC--------CCHHHHHHH
Q 017732 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR--------LGRQSVLAA 150 (367)
Q Consensus 79 ~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~--------~~~~~i~~~ 150 (367)
++++.|++.|..+|-.-..- +. ...+-..++++. -.+++...-|. |.. .-.+.+.+.
T Consensus 87 ~v~e~al~~G~~iINdisg~-~~--------~~~~~~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 151 (257)
T cd00739 87 EVARAALEAGADIINDVSGG-SD--------DPAMLEVAAEYG-----APLVLMHMRGT-PKTMQENPYYEDVVDEVLSF 151 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCC-CC--------ChHHHHHHHHcC-----CCEEEECCCCC-CcccccCCCcccHHHHHHHH
Confidence 46777888887777532211 11 123445666653 35666544332 111 012334444
Q ss_pred HHH---HHHhcCCCceeEEEEecCC--C----CChHHHHHHHHHHHHcCCccEEeecCCC
Q 017732 151 LKD---SLFRLGLSSVELYQLHWAG--I----WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (367)
Q Consensus 151 l~~---SL~~L~~dyiDl~~lH~p~--~----~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 201 (367)
+++ .+++.|++.=|+++ .|. . ...-++++.++++++.|.=-.+|+||-+
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~--DPg~gf~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 152 LEARLEAAESAGVARNRIIL--DPGIGFGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEE--ecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 443 34466665223322 221 1 1234678888888888876789999864
No 171
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=36.13 E-value=48 Score=23.34 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhc
Q 017732 292 RIKELGENYSKTSTQVGLNWLLA 314 (367)
Q Consensus 292 ~l~~ia~~~~~s~~q~al~~~l~ 314 (367)
.+.+||+++|+++.+++..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999863
No 172
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.09 E-value=2.4e+02 Score=25.63 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=34.6
Q ss_pred EeecCCCHH--HHHHHHHHHHhcCCCeeEecccccc---ccCC---cchhcHHHHHHHhCCeEEecccccc
Q 017732 195 VGVSNYSEK--RLRNAYEKLKKRGIPLASNQVNYSL---IYRK---PEENGVKAACDELGITLIAYCPIAQ 257 (367)
Q Consensus 195 iGvS~~~~~--~l~~~~~~~~~~~~~~~~~q~~~n~---~~~~---~~~~~~~~~~~~~gi~via~~pl~~ 257 (367)
+|+|++... .+++.++.++..| ++.+++..+. +... ..-..+.+.++++|+.+.++.|...
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G--~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELG--YDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcC--CCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 566665433 3566666666655 4444442211 1111 1123478888999999998877543
No 173
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.06 E-value=3.2e+02 Score=26.73 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHH-cC------CccEEeec--CCCHHHHHHHHHHHHhcCCCeeEeccccccccC----Ccchh---cHH
Q 017732 176 NEGFIDGLGDAVE-QG------LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR----KPEEN---GVK 239 (367)
Q Consensus 176 ~~~~~~~L~~l~~-~G------~ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~----~~~~~---~~~ 239 (367)
.+++++++.+..+ .| .|||+=|. |.+.++++++.+.++.. +..++-++||.+.. .+... .+.
T Consensus 242 l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l--~~~VnLIPYN~~~~~~~~~ps~e~v~~f~ 319 (372)
T PRK11194 242 IETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT--PCKINLIPWNPFPGAPYGRSSNSRIDRFS 319 (372)
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC--CceEEEecCCCCCCCCCCCCCHHHHHHHH
Confidence 4566666555543 32 35555555 45778888888876643 46888899998652 12111 355
Q ss_pred HHHHHhCCeEEecccccccc
Q 017732 240 AACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 240 ~~~~~~gi~via~~pl~~G~ 259 (367)
+..+++|+.+......|..+
T Consensus 320 ~~L~~~Gi~vtiR~~~G~di 339 (372)
T PRK11194 320 KVLMEYGFTVIVRKTRGDDI 339 (372)
T ss_pred HHHHHCCCeEEEecCCCCcc
Confidence 66777899998876666443
No 174
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=35.78 E-value=2.6e+02 Score=27.10 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=61.1
Q ss_pred EEEecCCC------------CChHHHHHHHHHHHHcCCccEEeec-------CCCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~~L~~l~~~G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
+-||.|+. ++.++.+++.+...+... +.|-+- |.+.++..++.+.++ +++..++-++|
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP~ 292 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIPY 292 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEeec
Confidence 66798864 346788888888776555 444321 456777777776643 35669999999
Q ss_pred ccccCCcch-------hcHHHHHHHhCCeEEecccccccc
Q 017732 227 SLIYRKPEE-------NGVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 227 n~~~~~~~~-------~~~~~~~~~~gi~via~~pl~~G~ 259 (367)
|+..-...+ ..+.+..++.||.+.....-|..+
T Consensus 293 Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 293 NPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
Confidence 998754322 135666677889998877776543
No 175
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=35.23 E-value=4e+02 Score=27.48 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
+.+.+.+...|++..+ +-+|.+-+|.- -.++.++.++ + |..||-+-...-+..++..- +
T Consensus 291 ~lt~e~~~d~ieeQAe----qGVDf~TIHaG------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h---~---- 349 (607)
T PRK09284 291 DLTWEIFRDTLIEQAE----QGVDYFTIHAG------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAH---H---- 349 (607)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChh------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHc---C----
Confidence 5677777777777666 45677888973 2455555554 3 77888887777777665431 1
Q ss_pred EeccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCC
Q 017732 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (367)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~ 264 (367)
.=|++..... ++++.|++++|.+ .||.|+--|..
T Consensus 350 ----kENplYe~FD--~ileI~k~YDVtl----SLGDGLRPG~i 383 (607)
T PRK09284 350 ----KENFLYTHFE--EICEIMAAYDVSF----SLGDGLRPGSI 383 (607)
T ss_pred ----CcCcHHHHHH--HHHHHHHHhCeee----eccCCcCCCcc
Confidence 2344443333 4999999999997 57877655443
No 176
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.22 E-value=4.4e+02 Score=25.84 Aligned_cols=105 Identities=23% Similarity=0.177 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
|+.|-+++++...+.+.+-++|.|-+.. ..-.+.+..-+++.-+++ -+.++.+|.|+... .+.++++|.
T Consensus 71 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~---~~~vi~v~t~gf~g~~~~G~~~a~~~l~ 144 (410)
T cd01968 71 EKKLYKAILEIIERYHPKAVFVYSTCVV---ALIGDDIDAVCKTASEKF---GIPVIPVHSPGFVGNKNLGNKLACEALL 144 (410)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhh---CCCEEEEECCCcccChhHHHHHHHHHHH
Confidence 7788888877554443456777777643 222223333333322333 35788889887522 233444444
Q ss_pred HHH---------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeE
Q 017732 185 DAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 185 ~l~---------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
+.. +++.|--||-.++. ..+.++.+.++..|+++.+
T Consensus 145 ~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 145 DHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred HHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 333 14678888854442 3445555556666665443
No 177
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=35.19 E-value=1.9e+02 Score=23.14 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=44.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC---CceeEEEEecCCC--CChHHHHHHHHHHHHc
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~---dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (367)
|=-+.|+-|++. ....+..+++.+.+.++.+.. ...|++++-.+.. .+..++.+.|..|.++
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 556777777653 246688888888888886643 3579999988764 4577888888777654
No 178
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=35.10 E-value=1.5e+02 Score=30.54 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc
Q 017732 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (367)
Q Consensus 145 ~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (367)
+...+.+.+.+++||+++ |.+. .--++...+.+.+.+.+|.++|.|-
T Consensus 73 ~~~~~~~~~~~~~l~i~~-d~~~-~t~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 73 DKYHEEHKEDFKKLGISY-DLFT-RTTSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHHHHHHHHHHHHcCCcC-CCCc-CCCCHHHHHHHHHHHHHHHHCCCeE
Confidence 445778889999999974 7432 1111123577889999999999875
No 179
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.80 E-value=4.4e+02 Score=25.63 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCcc-EEeecCCCH------------HHHHHHHHHHHhcCCCeeEeccccccccCCcch-hcHHHHHHHhC
Q 017732 181 DGLGDAVEQGLVK-AVGVSNYSE------------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELG 246 (367)
Q Consensus 181 ~~L~~l~~~G~ir-~iGvS~~~~------------~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~~g 246 (367)
+.|..|++.|.-| ++||=+++. +++.++++.++..|++...+.+.|.+-.+..+. ...++.+.+.+
T Consensus 108 e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~ 187 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALN 187 (378)
T ss_pred HHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 4455555666444 455544443 444455555555555433445555554444322 13566666666
Q ss_pred CeEEeccccc
Q 017732 247 ITLIAYCPIA 256 (367)
Q Consensus 247 i~via~~pl~ 256 (367)
+.-+...+|.
T Consensus 188 p~~is~y~l~ 197 (378)
T PRK05660 188 PPHLSWYQLT 197 (378)
T ss_pred CCeEEeeccE
Confidence 6666554443
No 180
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=34.40 E-value=4.6e+02 Score=25.78 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=55.6
Q ss_pred HhcCCCceeEEEEecCCC------CChHHHHHHHHHHHHcCCc-cEEeec---CCCHHHHHHHHHHHHhcCCCeeEeccc
Q 017732 156 FRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLV-KAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (367)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~------~~~~~~~~~L~~l~~~G~i-r~iGvS---~~~~~~l~~~~~~~~~~~~~~~~~q~~ 225 (367)
+.|+ +|++.||.-+. .+.++..+..++..+.=.+ --|+=| ..+++.++++++.+... ++-++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~--kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGE--RCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCC--CcEEEecC
Confidence 4555 57778876432 2245677777766443222 233323 45888999988775421 33332222
Q ss_pred cccccCCcchhcHHHHHHHhCCeEEecccccccc
Q 017732 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 226 ~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~ 259 (367)
... + .. .+.+.|+++|..+++++|..-+.
T Consensus 225 ~e~---N-y~-~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 225 LDL---D-YE-KIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred chh---h-HH-HHHHHHHHhCCeEEEEcCCcHHH
Confidence 111 1 22 48999999999999999887654
No 181
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=34.34 E-value=2.4e+02 Score=25.47 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCCee-Ee-ccccccccCC--cchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCC
Q 017732 201 SEKRLRNAYEKLKKRGIPLA-SN-QVNYSLIYRK--PEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGR 276 (367)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~-~~-q~~~n~~~~~--~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~ 276 (367)
++.+++.+ +++.|+.+. +| -.+||.++.. .+..++.++++.-|-.-+.+.|+..|--.+.
T Consensus 50 p~a~vka~---Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~------------- 113 (272)
T COG4130 50 PAAEVKAL---AEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT------------- 113 (272)
T ss_pred CHHHHHHH---HHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc-------------
Confidence 45555555 445555432 22 2356666542 2234699999999999999999987632111
Q ss_pred CCchHHHhhHHHHHHHHHHHHHHcCC
Q 017732 277 IYTAEYLRNLQPLLNRIKELGENYSK 302 (367)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~ia~~~~~ 302 (367)
-...+.....+.+++.|.+++|+
T Consensus 114 ---~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ---AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ---ccchHHHHHHHHHhhHHHHHhCc
Confidence 11123345566677777777765
No 182
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=34.07 E-value=4.4e+02 Score=25.44 Aligned_cols=129 Identities=11% Similarity=0.019 Sum_probs=73.4
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHH
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~ 149 (367)
..++.++..++++.+.+.|+..|.- .| |+....+.-.+++. .+++.. -.+.|.|-. ...+.+.+
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~---~G-GEPll~~~~~~il~-~~~~~g-----~~~~i~TNG----~ll~~~~~-- 107 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHF---SG-GEPLLRKDLEELVA-HARELG-----LYTNLITSG----VGLTEARL-- 107 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE---EC-CccCCchhHHHHHH-HHHHcC-----CcEEEECCC----ccCCHHHH--
Confidence 3567788999999999999988853 23 43322111122232 222221 245566654 33455433
Q ss_pred HHHHHHHhcCCCceeEEEEecCCC--------C--ChHHHHHHHHHHHHcCCcc--EEeecCCCHHHHHHHHHHHHhcCC
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGI--------W--GNEGFIDGLGDAVEQGLVK--AVGVSNYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~--------~--~~~~~~~~L~~l~~~G~ir--~iGvS~~~~~~l~~~~~~~~~~~~ 217 (367)
+.|+..|+++|-+ -|+..+. . ..+.+++.++.|++.|.-- .+-++..+.+++.++++.+...|+
T Consensus 108 ---~~L~~~g~~~v~i-Sldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv 183 (378)
T PRK05301 108 ---AALKDAGLDHIQL-SFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGA 183 (378)
T ss_pred ---HHHHHcCCCEEEE-EecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCC
Confidence 2355666654332 2233221 1 2567888888888887321 223456678888888888877776
Q ss_pred C
Q 017732 218 P 218 (367)
Q Consensus 218 ~ 218 (367)
+
T Consensus 184 ~ 184 (378)
T PRK05301 184 D 184 (378)
T ss_pred C
Confidence 4
No 183
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=34.00 E-value=1.9e+02 Score=23.30 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=45.5
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCC---ceeEEEEecCCC--CChHHHHHHHHHHHHc
Q 017732 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 125 ~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~d---yiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (367)
+|=-+.|+-|+|. ...+..+++.|.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 3667899999984 466788888888888877653 369999987654 4567777777776554
No 184
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=33.74 E-value=3.8e+02 Score=24.65 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCC-ccEEeecCCCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
+..+-+.|.++|+|.|.+-. +....+.++..+.+.+.++ .+..++...+.+.++.+.+. .++.+-+-+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~-----P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~------g~~~i~i~~ 92 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS-----PAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET------GVDGVDLVF 92 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC-----CCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc------CcCEEEEEE
Q ss_pred cc--------ccCCcchh-----cHHHHHHHhCCeEEec
Q 017732 227 SL--------IYRKPEEN-----GVKAACDELGITLIAY 252 (367)
Q Consensus 227 n~--------~~~~~~~~-----~~~~~~~~~gi~via~ 252 (367)
.. +....++. +.+.+++++|+.|...
T Consensus 93 ~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 93 GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
No 185
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.63 E-value=3.6e+02 Score=25.81 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=46.5
Q ss_pred HHHcCCccEEeecCCCHHHHHHHHHHHHhc--CCCeeEeccccccccCCcchhcHHHHHHHhCCeEEecc
Q 017732 186 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKR--GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 186 l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
.-+.|=+..||....+++++++.++.++.. +-||-++-+.+.. .+...+.++.|.+.++.++..+
T Consensus 23 VS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~---~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 23 VAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVD---TELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred HHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCC---CcchHHHHHHHHhcCCcEEEEc
Confidence 346788888998888999999888777663 4477777654422 1112248999999999998753
No 186
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=33.60 E-value=4.4e+02 Score=25.33 Aligned_cols=157 Identities=10% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHCCCCeEeC--CCC--cC---CCCCCCCCchHHHHHHHH---HhccCCCCCCcEEEEeccC-CCCCCCCH
Q 017732 76 AAKAAFDTSLDNGITFFDT--AEV--YG---SRASFGAINSETLLGRFI---KERKQRDPEVEVTVATKFA-ALPWRLGR 144 (367)
Q Consensus 76 ~~~~~l~~A~~~Gi~~~DT--A~~--Yg---~g~s~~~~~sE~~lG~al---~~~~~~~~R~~~~I~tK~g-~~~~~~~~ 144 (367)
-+.++++.+.+.|+.|++. ++. |. .|.+ -++++--.+ ++..... ++ .|..++= ......+.
T Consensus 71 ~~~~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~-----~~~v~~av~~~~~~~~~~~-~~--~i~v~lI~~~~R~~~~ 142 (345)
T cd01321 71 YYRRLLEELYEDNVQYVELRSSFSPLYDLDGREYD-----YEETVQLLEEVVEKFKKTH-PD--FIGLKIIYATLRNFND 142 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeecchHHHHccCCCCC-----HHHHHHHHHHHHHHHHHhC-CC--CceEEEEEEecCCCCH
Confidence 4566677788888888874 331 21 2222 234433333 3332111 11 2222210 00123456
Q ss_pred HHHHHHHHHHHHhcCCCcee-EE--EEecCC--CCChHHHHHHHHHHHHcC--C--ccEEeecCC----CHHHHHHHHHH
Q 017732 145 QSVLAALKDSLFRLGLSSVE-LY--QLHWAG--IWGNEGFIDGLGDAVEQG--L--VKAVGVSNY----SEKRLRNAYEK 211 (367)
Q Consensus 145 ~~i~~~l~~SL~~L~~dyiD-l~--~lH~p~--~~~~~~~~~~L~~l~~~G--~--ir~iGvS~~----~~~~l~~~~~~ 211 (367)
+...+.++...+- ...+-+ ++ =|...+ ..+......++..+++.| . +-|.|=+.. .++.+.+++..
T Consensus 143 e~~~e~~~~a~~~-~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~l 221 (345)
T cd01321 143 SEIKESMEQCLNL-KKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLL 221 (345)
T ss_pred HHHHHHHHHHHHH-HHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHh
Confidence 6666666655542 111112 11 111222 134567778888888877 2 224443321 13444444421
Q ss_pred HHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
. +.=+.--+++.. ...+++.+++++|.+-.
T Consensus 222 -g-----~~RIGHG~~~~~----dp~ll~~l~~~~I~lEv 251 (345)
T cd01321 222 -N-----TKRIGHGFALPK----HPLLMDLVKKKNIAIEV 251 (345)
T ss_pred -C-----CCcCccccccCc----CHHHHHHHHHcCCeEEE
Confidence 1 111111122221 12489999999998864
No 187
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=33.30 E-value=2e+02 Score=28.94 Aligned_cols=72 Identities=19% Similarity=0.093 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEE-ecCCCCChHHHHHHHHHHHHcCCccEEeec-CCCHHHHHHHHHHHHhcCCCe
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQL-HWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~l-H~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.+++.++.+. .+|.|++=+.+. ..|...+.+..-+....+. ++.+||- |-+++.+.++.+. ..+
T Consensus 265 t~~eda~~a~-----~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~-----~~l 330 (454)
T PRK09427 265 TRPQDAKAAY-----DAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ-----LSL 330 (454)
T ss_pred CCHHHHHHHH-----hCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH-----cCC
Confidence 3455555544 589999988754 3454454444433333332 8889987 6688888877655 578
Q ss_pred eEeccccc
Q 017732 220 ASNQVNYS 227 (367)
Q Consensus 220 ~~~q~~~n 227 (367)
+++|+.-+
T Consensus 331 D~vQLHG~ 338 (454)
T PRK09427 331 AAVQLHGD 338 (454)
T ss_pred CEEEeCCC
Confidence 99999763
No 188
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=33.30 E-value=4.4e+02 Score=25.24 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCC
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA 95 (367)
.+.++..++++..-+.|+..|+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 345888888888889999999985
No 189
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=33.26 E-value=92 Score=28.70 Aligned_cols=47 Identities=15% Similarity=0.026 Sum_probs=35.0
Q ss_pred CCceeEEEEecCCC----CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHH
Q 017732 160 LSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (367)
Q Consensus 160 ~dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 208 (367)
....|+++|..|-. ....++++.|.+|+++|+ .|=+.+|+...+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 45679999998743 235688999999999985 566677877766554
No 190
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=33.21 E-value=4.4e+02 Score=25.22 Aligned_cols=125 Identities=21% Similarity=0.233 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEeccCCCCCCCCHHHH
Q 017732 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD---PEVEVTVATKFAALPWRLGRQSV 147 (367)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~---~R~~~~I~tK~g~~~~~~~~~~i 147 (367)
..+.++...+++.+.+.|++=|=-+ | | |..|-+-|...-... .-+++-++|-. ..
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlT---G-G--------EPllR~dl~eIi~~l~~~~~~~islTTNG----------~~ 99 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLT---G-G--------EPLLRKDLDEIIARLARLGIRDLSLTTNG----------VL 99 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEe---C-C--------CchhhcCHHHHHHHHhhcccceEEEecch----------hh
Confidence 4567999999999999999977422 2 2 444333322211000 02566676665 23
Q ss_pred HHHHHHHHHhcCCCceeEEEEecCCC---------CChHHHHHHHHHHHHcCCc----cEEeecCCCHHHHHHHHHHHHh
Q 017732 148 LAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKK 214 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~i----r~iGvS~~~~~~l~~~~~~~~~ 214 (367)
......-|+.-|++.|-+ -||..++ ...+++++.+++.++.|.- -.+=+.+.+..++..+++.++.
T Consensus 100 L~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~ 178 (322)
T COG2896 100 LARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKE 178 (322)
T ss_pred HHHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhh
Confidence 445666677788776654 3344443 1256788888888888863 3555666677777777777766
Q ss_pred cCCC
Q 017732 215 RGIP 218 (367)
Q Consensus 215 ~~~~ 218 (367)
.+..
T Consensus 179 ~~~~ 182 (322)
T COG2896 179 RGAQ 182 (322)
T ss_pred cCCc
Confidence 6543
No 191
>PLN02417 dihydrodipicolinate synthase
Probab=33.03 E-value=4e+02 Score=24.66 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHH
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~ 149 (367)
+.+|.+...+.+++.++.|++-|=..-..|-+.+....+=++++-.+.+.. +.++-|..-++ ..+.+...+
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~-----~~~~pvi~gv~----~~~t~~~i~ 87 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF-----GGKIKVIGNTG----SNSTREAIH 87 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHh-----CCCCcEEEECC----CccHHHHHH
Confidence 457889999999999999999886655555543322222223343344433 23444444443 223333333
Q ss_pred HHHHHHHhcCCCceeEEEEecCCC--CChHHHHHHHHHHHHcC
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G 190 (367)
..+.. +++|. |.+++.-|.. .+.+++.+.++++.+..
T Consensus 88 ~a~~a-~~~Ga---dav~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 88 ATEQG-FAVGM---HAALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHHHH-HHcCC---CEEEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 33333 56775 4566666643 34678888888877765
No 192
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.96 E-value=3.8e+02 Score=24.37 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=52.2
Q ss_pred HHhcCCCceeEEEEecCC-----CCChHHHHHHHHHHHHcCC-ccEEeecCC--------CH-------HHHHHHHHHHH
Q 017732 155 LFRLGLSSVELYQLHWAG-----IWGNEGFIDGLGDAVEQGL-VKAVGVSNY--------SE-------KRLRNAYEKLK 213 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~-----~~~~~~~~~~L~~l~~~G~-ir~iGvS~~--------~~-------~~l~~~~~~~~ 213 (367)
.+++|.|+|++....... .++..+.-+..+.+.+.|. |-.++++.+ +. +.+.++++.+.
T Consensus 25 ~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~ 104 (284)
T PRK13210 25 AKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQ 104 (284)
T ss_pred HHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999996432111 1223344444555677773 224443321 21 34667777888
Q ss_pred hcCCCeeEeccccccc-cCCcc---------hhcHHHHHHHhCCeEEecccc
Q 017732 214 KRGIPLASNQVNYSLI-YRKPE---------ENGVKAACDELGITLIAYCPI 255 (367)
Q Consensus 214 ~~~~~~~~~q~~~n~~-~~~~~---------~~~~~~~~~~~gi~via~~pl 255 (367)
..|.+...+. .+... .+..+ -..+.+.++++||.+. +-+.
T Consensus 105 ~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~-lE~~ 154 (284)
T PRK13210 105 DLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA-VEIM 154 (284)
T ss_pred HhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE-EEec
Confidence 8777654432 12111 11111 0247788899999654 4444
No 193
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=32.49 E-value=70 Score=31.87 Aligned_cols=95 Identities=11% Similarity=0.020 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCC----------------CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPW----------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~----------------~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~ 173 (367)
|.++.-+-+..... -+.+++|+.-+|.... ..+...| =+||.+.|+|..-
T Consensus 151 eT~~~~~r~h~~gd-L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI-------~~Rl~t~y~d~~a------ 216 (561)
T COG2987 151 ETFAEAGRQHFGGD-LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRI-------DKRLRTGYLDEIA------ 216 (561)
T ss_pred HHHHHHHHHhcCCC-ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHH-------HHHHhcchhhhhc------
Confidence 55544433333222 2678899888875310 1223222 2588899998732
Q ss_pred CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe
Q 017732 174 WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (367)
Q Consensus 174 ~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (367)
.+.+|.++..++..++|+-.+||+-..-++.+.++++. ++.|+++
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~v 261 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLV 261 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCcee
Confidence 46899999999999999999999998877777777654 4666665
No 194
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=32.35 E-value=2.5e+02 Score=26.47 Aligned_cols=87 Identities=11% Similarity=0.035 Sum_probs=49.5
Q ss_pred eeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHH
Q 017732 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (367)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~ 241 (367)
+++.++-.|-. .. +.+.+|.++-.+. ..|=|-++.+++..+++. .-.+++|+.....---.+-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 35555555532 11 4555565554333 445556666776666543 2356666655443211112258999
Q ss_pred HHHhCCeEEecccccccc
Q 017732 242 CDELGITLIAYCPIAQGA 259 (367)
Q Consensus 242 ~~~~gi~via~~pl~~G~ 259 (367)
|+.+|+.++..+.+..|+
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999877666653
No 195
>PRK06424 transcription factor; Provisional
Probab=32.20 E-value=2.1e+02 Score=23.87 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=42.2
Q ss_pred cHHHHHHHhCCeEEec---ccccc--ccccCCCC-C-CC--CCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHH
Q 017732 237 GVKAACDELGITLIAY---CPIAQ--GALTGKYT-P-QN--PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQV 307 (367)
Q Consensus 237 ~~~~~~~~~gi~via~---~pl~~--G~l~~~~~-~-~~--~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~ 307 (367)
.+=+.|.+.|..|..+ +|... -.-+.... . .. .....+.+.+.+...+....+-+.++.+-++.|+|-.++
T Consensus 24 ~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eL 103 (144)
T PRK06424 24 NVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYKKKASDEDLDIVEDYAELVKNARERLSMSQADL 103 (144)
T ss_pred ehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCccCcccHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4788899999999988 55532 11111000 0 00 001112222333333333334457777888889998888
Q ss_pred HHHHHhcC
Q 017732 308 GLNWLLAQ 315 (367)
Q Consensus 308 al~~~l~~ 315 (367)
|-+--+++
T Consensus 104 A~~iGvs~ 111 (144)
T PRK06424 104 AAKIFERK 111 (144)
T ss_pred HHHhCCCH
Confidence 87655443
No 196
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=32.15 E-value=4.5e+02 Score=24.95 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHcCCccEEeecC----CCHHH-HHHHHHHHHhcCCCeeEeccccccc-cCCcchhcHHHHHHHhCCe
Q 017732 175 GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKR-LRNAYEKLKKRGIPLASNQVNYSLI-YRKPEENGVKAACDELGIT 248 (367)
Q Consensus 175 ~~~~~~~~L~~l~~~G~ir~iGvS~----~~~~~-l~~~~~~~~~~~~~~~~~q~~~n~~-~~~~~~~~~~~~~~~~gi~ 248 (367)
+...+.+.++.+++.|.|+.+.+.+ .++.. -.++++.++..+.. ..+.++.|-. .-..+....++.+++.||.
T Consensus 151 ~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~ 229 (321)
T TIGR03822 151 SPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAEARAACARLIDAGIP 229 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCE
Confidence 3567888888999988887555543 12222 12333334444432 2333333311 0011112467778889999
Q ss_pred EEecccccccc
Q 017732 249 LIAYCPIAQGA 259 (367)
Q Consensus 249 via~~pl~~G~ 259 (367)
+...+++..|.
T Consensus 230 v~~q~vLl~gv 240 (321)
T TIGR03822 230 MVSQSVLLRGV 240 (321)
T ss_pred EEEEeeEeCCC
Confidence 99988888773
No 197
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=32.05 E-value=3.5e+02 Score=24.98 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 017732 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (367)
Q Consensus 76 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL 155 (367)
+...+.+.|++.|..|+=|+.-|+.+.+ +.+.-++|-+.+++... ..+ +--|... .-.+.+...+-++.--
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHHH
Confidence 4778899999999999999998875322 11223444444443210 122 3334421 2357888888899999
Q ss_pred HhcCCCcee
Q 017732 156 FRLGLSSVE 164 (367)
Q Consensus 156 ~~L~~dyiD 164 (367)
+.||.+|++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999998876
No 198
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.96 E-value=5.2e+02 Score=25.62 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
+++..+..+.+++.|++.|=.-- |.... ...+.+ +++++.- -+++.|.--.. ..++.+...+-+
T Consensus 197 ~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~----~d~~~v-~avRe~v----G~~~~L~vDaN---~~w~~~~A~~~~-- 260 (415)
T cd03324 197 DEKLRRLCKEALAQGFTHFKLKV--GADLE----DDIRRC-RLAREVI----GPDNKLMIDAN---QRWDVPEAIEWV-- 260 (415)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC--CCCHH----HHHHHH-HHHHHhc----CCCCeEEEECC---CCCCHHHHHHHH--
Confidence 35555666777788999875321 11000 001223 3344322 13555554442 235565544433
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC---Ccc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccc
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG---LVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G---~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (367)
++|. -+++.++-.|-.. +-++.+.+|++.. .|. ..|=+.++...+.++++. .-++++|+...-.
T Consensus 261 --~~L~--~~~l~~iEEP~~~---~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~ 328 (415)
T cd03324 261 --KQLA--EFKPWWIEEPTSP---DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRL 328 (415)
T ss_pred --HHhh--ccCCCEEECCCCC---CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCcccc
Confidence 3332 2355666665432 2355666666654 233 445566788888877654 2478888776543
Q ss_pred cCCcchhcHHHHHHHhCCeEEecc
Q 017732 230 YRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
---.+-..+...|+.+|+.+....
T Consensus 329 GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 329 GGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEcC
Confidence 311122248899999999987753
No 199
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=31.89 E-value=2.4e+02 Score=27.95 Aligned_cols=84 Identities=7% Similarity=-0.060 Sum_probs=53.7
Q ss_pred EEecCCCCC-hHHHHHHHHHHHHc------CCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHH
Q 017732 167 QLHWAGIWG-NEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVK 239 (367)
Q Consensus 167 ~lH~p~~~~-~~~~~~~L~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~ 239 (367)
++-.|-... .++-++.+.+|+++ ..=-..+=|.++.+++.++++. .-.+++|+..+-+---.+-..+.
T Consensus 267 ~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia 341 (408)
T TIGR01502 267 RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAI 341 (408)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHH
Confidence 666664322 24557777777765 2223556666788888887654 24778887766543222223589
Q ss_pred HHHHHhCCeEEecccc
Q 017732 240 AACDELGITLIAYCPI 255 (367)
Q Consensus 240 ~~~~~~gi~via~~pl 255 (367)
++|+++||.++..+..
T Consensus 342 ~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 342 MYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHcCCEEEEeCCC
Confidence 9999999999986655
No 200
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=31.81 E-value=4.6e+02 Score=24.94 Aligned_cols=25 Identities=8% Similarity=-0.085 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEeCC
Q 017732 71 DRKMKAAKAAFDTSLDNGITFFDTA 95 (367)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gi~~~DTA 95 (367)
..+.++..+.++.+.+.|++.|--.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~ 95 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQ 95 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3567889999999999999877553
No 201
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=31.76 E-value=2.6e+02 Score=22.35 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=43.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCC------ceeEEEEecCCC--CChHHHHHHHHHHH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS------SVELYQLHWAGI--WGNEGFIDGLGDAV 187 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~d------yiDl~~lH~p~~--~~~~~~~~~L~~l~ 187 (367)
|=-+.|+-|++. ....+..+++.+.++.+.+..+ ..|++++-.+.. .+..++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~--kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNK--KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCC--chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 567889999653 3566888999999999887642 579999988764 44566666666553
No 202
>COG0218 Predicted GTPase [General function prediction only]
Probab=31.74 E-value=3.7e+02 Score=23.84 Aligned_cols=128 Identities=13% Similarity=-0.005 Sum_probs=78.8
Q ss_pred cceeEEcCCCCcccccccccccccCCCCCCCCCCCchhhHHHHHHHHHHHHH------CCCCeEeCCCCcCCCCCCCCCc
Q 017732 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD------NGITFFDTAEVYGSRASFGAIN 108 (367)
Q Consensus 35 ~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~------~Gi~~~DTA~~Yg~g~s~~~~~ 108 (367)
.+.+..+.+--.-|---|||-+.... .-.+.-..++...++ ..+-++|.-..--.
T Consensus 62 ~iNff~~~~~~~lVDlPGYGyAkv~k-----------~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~-------- 122 (200)
T COG0218 62 LINFFEVDDELRLVDLPGYGYAKVPK-----------EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKD-------- 122 (200)
T ss_pred eeEEEEecCcEEEEeCCCcccccCCH-----------HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcH--------
Confidence 34444555422234444777665321 123445555555544 35557776433222
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeE--EEE-ecCCCCChHHHHHHHHH
Q 017732 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVEL--YQL-HWAGIWGNEGFIDGLGD 185 (367)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl--~~l-H~p~~~~~~~~~~~L~~ 185 (367)
.+..+=+||.... ..=+++.||. .........+.+....+.|+.+..|- +++ -...-.+.+++++.+.+
T Consensus 123 ~D~em~~~l~~~~----i~~~vv~tK~----DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~ 194 (200)
T COG0218 123 LDREMIEFLLELG----IPVIVVLTKA----DKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILE 194 (200)
T ss_pred HHHHHHHHHHHcC----CCeEEEEEcc----ccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHH
Confidence 2666778998876 4678999999 66777888888999999998877764 333 33333567888888777
Q ss_pred HHHc
Q 017732 186 AVEQ 189 (367)
Q Consensus 186 l~~~ 189 (367)
....
T Consensus 195 ~~~~ 198 (200)
T COG0218 195 WLKE 198 (200)
T ss_pred Hhhc
Confidence 6543
No 203
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=31.68 E-value=1.2e+02 Score=30.68 Aligned_cols=81 Identities=9% Similarity=0.016 Sum_probs=52.0
Q ss_pred CCCcEEEEeccCCCCC----------------CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHH
Q 017732 125 PEVEVTVATKFAALPW----------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (367)
Q Consensus 125 ~R~~~~I~tK~g~~~~----------------~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~ 188 (367)
-+-++||++-+|.... ..++..| -+|+.+.|+|.+. .+.++.++..++.++
T Consensus 155 L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri-------~kR~~~g~ld~~~------~~ldea~~~~~ea~~ 221 (546)
T PF01175_consen 155 LAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRI-------EKRLEQGYLDEVT------DDLDEALARAKEARA 221 (546)
T ss_dssp -TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHH-------HHHHHTTSSSEEE------SSHHHHHHHHHHHHH
T ss_pred CcceEEEEecccccccchHHHHHhcCceEEEEEECHHHH-------HHHHhCCCeeEEc------CCHHHHHHHHHHhhc
Confidence 3678999999886311 2334433 3588889999865 468999999999999
Q ss_pred cCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe
Q 017732 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (367)
Q Consensus 189 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~ 222 (367)
+|+..+||+-..-.+.++++.+. ++.|+++
T Consensus 222 ~~~~~SIg~~GN~ad~~~~l~~~----~i~pDl~ 251 (546)
T PF01175_consen 222 KKEPLSIGLLGNAADLWEELVER----GIIPDLV 251 (546)
T ss_dssp TT--EEEEEES-HHHHHHHHHHT----T---SEE
T ss_pred cCCeeEEEEeccHHHHHHHHHHc----CCCCCcc
Confidence 99999999998777777776543 4555554
No 204
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.66 E-value=4.6e+02 Score=24.99 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~S 154 (367)
++..+.+..+++.|++.|=.=- +.... .+.| +++++.. + ++-|.--.. ..++.+... -
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~---g--~~~l~lDaN---~~~~~~~a~-----~ 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF---P--DIPLMADAN---SAYTLADIP-----L 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC---C--CCeEEEECC---CCCCHHHHH-----H
Confidence 5566777888899999874311 11111 3343 3444432 1 344444431 234454432 2
Q ss_pred HHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCc
Q 017732 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (367)
+++|. ..++.++-.|-. .+-++.+.+|++.-.+. +.|=|.++.+.+..+++. .-++++|+..+..---.
T Consensus 197 ~~~l~--~~~i~~iEeP~~---~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRLD--EYGLLMIEQPLA---ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHhh--cCCccEEECCCC---hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 34442 346666666532 23366677777654433 667777888888888654 24678877655433211
Q ss_pred chhcHHHHHHHhCCeEEecccccc
Q 017732 234 EENGVKAACDELGITLIAYCPIAQ 257 (367)
Q Consensus 234 ~~~~~~~~~~~~gi~via~~pl~~ 257 (367)
+-..+...|+.+|+.++..+.+..
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGMLES 290 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcccc
Confidence 122488999999999976544433
No 205
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=31.45 E-value=4.8e+02 Score=25.11 Aligned_cols=153 Identities=11% Similarity=0.003 Sum_probs=82.4
Q ss_pred HHHHHHH-HCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHh
Q 017732 79 AAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (367)
Q Consensus 79 ~~l~~A~-~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~ 157 (367)
+.++.++ +.|++.|=.=- |...- ....+.| +++++.- .+++.|.--.. ..++.+...+ .+++
T Consensus 147 ~~~~~~~~~~Gf~~~KiKv--g~~~~---~~d~~~v-~~~re~~----g~~~~l~~DaN---~~~~~~~A~~----~~~~ 209 (368)
T TIGR02534 147 AEAEERIEEKRHRSFKLKI--GARDP---ADDVAHV-VAIAKAL----GDRASVRVDVN---AAWDERTALH----YLPQ 209 (368)
T ss_pred HHHHHHHHhcCcceEEEEe--CCCCc---HHHHHHH-HHHHHhc----CCCcEEEEECC---CCCCHHHHHH----HHHH
Confidence 3345555 47999885321 11000 0012333 4444432 24555554442 2355554333 2233
Q ss_pred cCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchh
Q 017732 158 LGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN 236 (367)
Q Consensus 158 L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~ 236 (367)
|. .+++.++-.|-.. +-++.+.+|++...+. ..|=|-++..++.++++. .-++++|+...-.--=.+-.
T Consensus 210 l~--~~~~~~iEeP~~~---~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~ 279 (368)
T TIGR02534 210 LA--DAGVELIEQPTPA---ENREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESK 279 (368)
T ss_pred HH--hcChhheECCCCc---ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHH
Confidence 32 2355556655332 2366777788776666 677778888888877654 24677777655432111112
Q ss_pred cHHHHHHHhCCeEEeccccccc
Q 017732 237 GVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 237 ~~~~~~~~~gi~via~~pl~~G 258 (367)
.+...|+.+|+.++..+.+.++
T Consensus 280 ~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 280 KIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHcCCceeeecchhhH
Confidence 4888999999998876544443
No 206
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=31.43 E-value=5.3e+02 Score=25.57 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCceeEEEEecCCC--------CChHHHHHHHHHHHHcCCcc-----EEeecCCCHHHHHHHHHHHHhc
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLVK-----AVGVSNYSEKRLRNAYEKLKKR 215 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~--------~~~~~~~~~L~~l~~~G~ir-----~iGvS~~~~~~l~~~~~~~~~~ 215 (367)
.-+.|+++|+.+|.+=+=.-.+. ...+++.++++.+++.|.-- -+|+-+.+.+.+.+.++.+...
T Consensus 143 ~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l 220 (430)
T PRK08208 143 KLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVY 220 (430)
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 33445566666555432221110 23456666666666665311 1355555666666555555443
No 207
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=31.36 E-value=3.8e+02 Score=23.88 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHH
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l 151 (367)
.++++...+.+.|.+.|..|+=|+.-|+.+.+ -.---+.+++.- ++++=|---.|. .+.+...+-+
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~ga------t~~dv~~m~~~v----~~~v~IKaaGGi----rt~~~a~~~i 194 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGA------TVEDVRLMRNTV----GDTIGVKASGGV----RTAEDAIAMI 194 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC------CHHHHHHHHHHh----ccCCeEEEeCCC----CCHHHHHHHH
Q ss_pred HHHHHhcCCCc
Q 017732 152 KDSLFRLGLSS 162 (367)
Q Consensus 152 ~~SL~~L~~dy 162 (367)
+.--.|+|+..
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
No 208
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=31.16 E-value=2.1e+02 Score=26.09 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCC
Q 017732 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (367)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi 247 (367)
.++.+.|+.|+++|..-+| +||.....+...++.+...+..++.+...-......+...-+...+++.|+
T Consensus 104 pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~ 173 (267)
T PRK13478 104 PGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGV 173 (267)
T ss_pred CCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCC
Confidence 4567778888999865455 566666666666554333333234443333322222222235666677665
No 209
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.12 E-value=1.3e+02 Score=23.48 Aligned_cols=50 Identities=28% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccC
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g 136 (367)
.-.....--.+++|.-|+-|-..|.-|. |.++---|-+. .+++++++|+.
T Consensus 20 a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~-----pekl~vagkVa 69 (117)
T COG3215 20 ALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDF-----PEKLPVAGKVA 69 (117)
T ss_pred HHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCc-----hhhccccceEE
Confidence 3344445556799999999999998873 55543333333 37899999974
No 210
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=31.06 E-value=5e+02 Score=25.14 Aligned_cols=27 Identities=4% Similarity=0.117 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCCCCc
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTAEVY 98 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Y 98 (367)
.+.++-.++++.-.+.|++.|+....-
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~v 91 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFV 91 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 445788889999889999999987543
No 211
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=30.89 E-value=52 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=33.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccc
Q 017732 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 198 S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
+.++...+.++++. .-++++|+...-.---.+-..+.+.|+++|+.++..+. ..+
T Consensus 3 ~~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 44566777777653 24677777644432111122488899999999998876 544
No 212
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=30.49 E-value=2.3e+02 Score=25.51 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCC
Q 017732 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (367)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi 247 (367)
..++.+.|+.|+++|.--.| +||.+...+...++.....+..++.+...-......+...-+...+++.|+
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 34577788889999854455 777777777766654433332224443332222222222235666666665
No 213
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.40 E-value=4.4e+02 Score=24.38 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHCCCCeEeCC---CCcCCC-CCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTA---EVYGSR-ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA---~~Yg~g-~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~ 149 (367)
.++..+..+.+.+.|+..||.- +.+..+ ...+ .+.+.+-+.++.... .-++-|..|+++ +. +.+.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~---~~~~Pv~vKl~~---~~--~~~~- 169 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKK---ATDVPVIVKLTP---NV--TDIV- 169 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHh---ccCCCEEEEeCC---Cc--hhHH-
Confidence 4677778888888999999862 222111 1000 125666666665431 125778889864 11 1222
Q ss_pred HHHHHHHhcCCCceeEEE------EecCC--C--------C----ChHHHHHHHHHHHHcCCccEEeecCC-CHHHHHHH
Q 017732 150 ALKDSLFRLGLSSVELYQ------LHWAG--I--------W----GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNA 208 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~------lH~p~--~--------~----~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~ 208 (367)
.+-+.+...|.|.|++.- +|... + . ...-.++.+.++++.=.|--||+... +++++.++
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 333456778988887641 11100 0 0 01235677777777656889998886 77888888
Q ss_pred HHHHHhcCCCeeEecccccccc-CC---cchhcHHHHHHHhCC
Q 017732 209 YEKLKKRGIPLASNQVNYSLIY-RK---PEENGVKAACDELGI 247 (367)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~-~~---~~~~~~~~~~~~~gi 247 (367)
+.. ..+.+|+---++. +. ....++.++.+++|.
T Consensus 250 l~~------GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 250 LMA------GASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHc------CCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 653 2577766444333 11 111245555666654
No 214
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=30.11 E-value=4.3e+02 Score=24.17 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHH-HHhccCCC--CCCcEEEEeccCCCCC---CCCHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF-IKERKQRD--PEVEVTVATKFAALPW---RLGRQSVL 148 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~a-l~~~~~~~--~R~~~~I~tK~g~~~~---~~~~~~i~ 148 (367)
+++.+.+..++..|-+.| .+|.|.| -. +|.. ..+..... +++.+.-..-.|.... .-..+.-.
T Consensus 36 ~~av~~~~~~l~~ggrl~----~~GaGtS------g~-la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~ 104 (257)
T cd05007 36 ARAVDAAAERLRAGGRLI----YVGAGTS------GR-LGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDE 104 (257)
T ss_pred HHHHHHHHHHHHcCCEEE----EEcCcHH------HH-HHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChH
Confidence 455566667778898888 6788865 32 2311 11221111 2333333322221000 00011111
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHH
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 208 (367)
..-.+.+...+...=|+++.-.... ...+++++++.+++.| +.-|++++.....+.+.
T Consensus 105 ~~~~~~l~a~~l~~~DvvI~IS~SG-~T~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~ 162 (257)
T cd05007 105 EAGAADLQAINLTERDVVIGIAASG-RTPYVLGALRYARARG-ALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHHHHHcCCCCCCEEEEEeCCC-CCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 1123334455556678887766442 3577999999999998 78899999876666554
No 215
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.85 E-value=4.1e+02 Score=23.84 Aligned_cols=170 Identities=13% Similarity=0.082 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHH
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l 151 (367)
.+.++..++++...+.|+..|+....=...........++.+.+ +++.. +...+...+..+ .+.+++.
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~-l~~~~---~~~~~~~l~~~~-------~~~i~~a- 83 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRA-IRKLV---PNVKLQALVRNR-------EKGIERA- 83 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHH-HHhcc---CCcEEEEEccCc-------hhhHHHH-
Confidence 35689999999999999999986532221000000112444444 33322 122333333321 2223332
Q ss_pred HHHHHhcCCCceeEEEEecCC-------C---CChHHHHHHHHHHHHcCCccEEee---cC--CCHHHHHHHHHHHHhcC
Q 017732 152 KDSLFRLGLSSVELYQLHWAG-------I---WGNEGFIDGLGDAVEQGLVKAVGV---SN--YSEKRLRNAYEKLKKRG 216 (367)
Q Consensus 152 ~~SL~~L~~dyiDl~~lH~p~-------~---~~~~~~~~~L~~l~~~G~ir~iGv---S~--~~~~~l~~~~~~~~~~~ 216 (367)
. ..+.+.+-+++--.+- . ...+.+.+.++.+++.|.--.+.+ +. ++++.+.++.+.+...+
T Consensus 84 ---~-~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g 159 (265)
T cd03174 84 ---L-EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG 159 (265)
T ss_pred ---H-hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC
Confidence 2 3455665555421110 0 124667788888999997655544 44 77788888877777666
Q ss_pred CCeeEeccccccccCCcchhcHHHHHHHh----CCeEEeccccccc
Q 017732 217 IPLASNQVNYSLIYRKPEENGVKAACDEL----GITLIAYCPIAQG 258 (367)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~~----gi~via~~pl~~G 258 (367)
.....+.--...+.+... ..++...++. -+++..+.-+|-+
T Consensus 160 ~~~i~l~Dt~G~~~P~~v-~~li~~l~~~~~~~~~~~H~Hn~~gla 204 (265)
T cd03174 160 ADEISLKDTVGLATPEEV-AELVKALREALPDVPLGLHTHNTLGLA 204 (265)
T ss_pred CCEEEechhcCCcCHHHH-HHHHHHHHHhCCCCeEEEEeCCCCChH
Confidence 443333222333333221 2356555543 3444455555543
No 216
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.82 E-value=5.1e+02 Score=24.84 Aligned_cols=158 Identities=12% Similarity=0.098 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCC--CC-chHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFG--AI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~--~~-~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~ 150 (367)
.++..+.+..+.+.|++.|=.--..+.+...+ .. .-.+.| +++++.- ..++.|..-.. ..++.+...+
T Consensus 124 ~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i-~avr~~~----g~~~~l~vDaN---~~~~~~~A~~- 194 (352)
T cd03325 124 PSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERV-AALREAV----GPDIDIGVDFH---GRVSKPMAKD- 194 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHH-
Confidence 35556667777899999886532111100000 00 002222 3444432 13555555442 2345543333
Q ss_pred HHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccc
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~ 229 (367)
-++.|. .+++.++-.|-. .+-++.+.+|+++.-+. +.|=|.++..++..+++. .-++++|+.....
T Consensus 195 ---~~~~l~--~~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~ 261 (352)
T cd03325 195 ---LAKELE--PYRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHA 261 (352)
T ss_pred ---HHHhcc--ccCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCcccc
Confidence 233443 235556665532 22377788888876666 556677788888887653 2377888775443
Q ss_pred cCCcchhcHHHHHHHhCCeEEecc
Q 017732 230 YRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 230 ~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
---..-..+.+.|+++|+.++..+
T Consensus 262 GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 262 GGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CCHHHHHHHHHHHHHcCCcEeccC
Confidence 211112248999999999998654
No 217
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.75 E-value=5.1e+02 Score=24.86 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
+++..+-.+.+++.|++.|=.-- |.... ...+.+ +++++.- -+++-|.--.. ..++.+...+-+ +
T Consensus 139 ~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~----~d~~~v-~~vRe~~----G~~~~l~vDaN---~~~~~~~A~~~~-~ 203 (352)
T cd03328 139 DDRLREQLSGWVAQGIPRVKMKI--GRDPR----RDPDRV-AAARRAI----GPDAELFVDAN---GAYSRKQALALA-R 203 (352)
T ss_pred HHHHHHHHHHHHHCCCCEEEeec--CCCHH----HHHHHH-HHHHHHc----CCCCeEEEECC---CCCCHHHHHHHH-H
Confidence 45555666777789999875311 21100 012333 3444432 13444444432 235555444322 3
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHc--CCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEecccccccc
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (367)
.|+. +++.++-.|-. .+-++.+.+|+++ -.|. ..|=|.++..++.++++. .-.+++|+...-.-
T Consensus 204 ~l~~-----~~~~~~EeP~~---~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~G 270 (352)
T cd03328 204 AFAD-----EGVTWFEEPVS---SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRCG 270 (352)
T ss_pred HHHH-----hCcchhhCCCC---hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCccccC
Confidence 3333 35555555432 3346778888877 3333 566677888888888764 24788888766532
Q ss_pred CCcchhcHHHHHHHhCCeEEecc
Q 017732 231 RKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~gi~via~~ 253 (367)
--.+-..+.+.|+.+|+.++...
T Consensus 271 Git~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 271 GVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CHHHHHHHHHHHHHcCCeeccCc
Confidence 11112248999999999998753
No 218
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.74 E-value=5e+02 Score=25.48 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccc
Q 017732 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (367)
Q Consensus 180 ~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~p 254 (367)
+..+..+.+.+.++.+-+...+.+.++++++ ...+..++..+.|+.-+-..-..+.+.|+++|+.++.=..
T Consensus 113 ~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~----~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a 183 (405)
T PRK08776 113 WRLFNALAKKGHFALITADLTDPRSLADALA----QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNT 183 (405)
T ss_pred HHHHHHHHHhcCcEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 3333333333344444444344444444321 1234445555555544332223466667777766664333
No 219
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=29.55 E-value=5.2e+02 Score=25.62 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEE-ecCCC-----------CC-hH---HHHHH-HHHHHHcCCccEEeecCCCH
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI-----------WG-NE---GFIDG-LGDAVEQGLVKAVGVSNYSE 202 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~l-H~p~~-----------~~-~~---~~~~~-L~~l~~~G~ir~iGvS~~~~ 202 (367)
.-+.+.+.+.+++.++ |+.|+|.+|.+ |-|.. .+ .+ +.++. .+.|.+.|. +.+|+|||.-
T Consensus 200 ~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 4567778888887776 88999999998 44432 11 12 34444 444667777 9999999964
No 220
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=29.49 E-value=5.9e+02 Score=25.56 Aligned_cols=107 Identities=11% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcC---C--CceeEEEEecCCCCC-----hHH
Q 017732 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG---L--SSVELYQLHWAGIWG-----NEG 178 (367)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~---~--dyiDl~~lH~p~~~~-----~~~ 178 (367)
|+.|-++++....+.+ .+=++|.|-+.. ..-.+.+..-+++.-++++ . -.+.++.+|.|+... .+.
T Consensus 77 ~~~L~~ai~~~~~~~~~p~~i~v~ttc~~---eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy~~ 153 (461)
T TIGR02931 77 LDRVEEAVDVLLTRYPDVKVVPIITTCST---EIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITGYDV 153 (461)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCchH---HhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHHHHH
Confidence 7778888887544332 344667776632 2233344444544444442 1 135789999988733 233
Q ss_pred HHHHHHH-HHH----cCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 179 FIDGLGD-AVE----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 179 ~~~~L~~-l~~----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
.+++|.+ +.. +++|--||-. .++..+.++.+.++..|+.+.
T Consensus 154 a~~ali~~~~~~~~~~~~VNlig~~-~~~~D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 154 AVHDFVKHFAKKDKPNDKINLITGW-VNPGDVKELKHLLEEMDIEAN 199 (461)
T ss_pred HHHHHHHHHccCCCCCCcEEEECCC-CChhhHHHHHHHHHHcCCceE
Confidence 3333332 222 4668888854 345666777776777776544
No 221
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=29.40 E-value=2.3e+02 Score=26.17 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH-HcCCccEEeecCCCH---HHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEec
Q 017732 177 EGFIDGLGDAV-EQGLVKAVGVSNYSE---KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 177 ~~~~~~L~~l~-~~G~ir~iGvS~~~~---~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~ 252 (367)
+++++.+++++ +.-.+.-|=++=+++ ..+++..+.++..|+ +.+-++==+++ +..++.+.|+++|+..+.+
T Consensus 72 ~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGv--dGlIipDLP~e---e~~~~~~~~~~~gl~~I~l 146 (259)
T PF00290_consen 72 EKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGV--DGLIIPDLPPE---ESEELREAAKKHGLDLIPL 146 (259)
T ss_dssp HHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTE--EEEEETTSBGG---GHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCC--CEEEEcCCChH---HHHHHHHHHHHcCCeEEEE
Confidence 45666667776 555555444443332 124444444444442 22222111111 2235788889999888754
No 222
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=29.36 E-value=44 Score=33.48 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEecccccc
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~ 228 (367)
..|-+.|..+| |.+-..| ..+.. .-+.|.++|-.-++|.+ ++.+.. ..+.++- |.
T Consensus 21 sglA~iL~~~G------~~VsGSD---~~~~~-~t~~L~~~G~~i~~gh~---~~ni~~---------~~~VV~s---~A 75 (459)
T COG0773 21 SGLAEILLNLG------YKVSGSD---LAESP-MTQRLEALGIEIFIGHD---AENILD---------ADVVVVS---NA 75 (459)
T ss_pred HHHHHHHHhCC------CceECcc---ccccH-HHHHHHHCCCeEeCCCC---HHHcCC---------CceEEEe---cc
Confidence 45666677776 2222222 22222 55677888877777644 332211 1232222 22
Q ss_pred ccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHH
Q 017732 229 IYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVG 308 (367)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~a 308 (367)
+.+. +.-+.+++++||.++.+.-+..-++..+ .--.++..||+|.+.-.
T Consensus 76 i~~~---NpEi~~A~e~~ipi~~r~e~Laelm~~~----------------------------~~iaVaGTHGKTTTTsm 124 (459)
T COG0773 76 IKED---NPEIVAALERGIPVISRAEMLAELMRFR----------------------------TSIAVAGTHGKTTTTSM 124 (459)
T ss_pred cCCC---CHHHHHHHHcCCCeEcHHHHHHHHHhCC----------------------------eeEEEeCCCCchhHHHH
Confidence 2222 2358889999999998766554433221 12346778999999999
Q ss_pred HHHHhcCCCe--EEecC
Q 017732 309 LNWLLAQDNV--VPIPG 323 (367)
Q Consensus 309 l~~~l~~~~v--~vi~g 323 (367)
|+|+++..+. ++++|
T Consensus 125 la~vl~~~gldPtf~iG 141 (459)
T COG0773 125 LAWVLEAAGLDPTFLIG 141 (459)
T ss_pred HHHHHHhCCCCCEEEEC
Confidence 9999997644 66666
No 223
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.36 E-value=3.3e+02 Score=24.07 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=18.7
Q ss_pred HHHHhcCCCeEEecCCCCHHHHHHHHhh
Q 017732 309 LNWLLAQDNVVPIPGAKNAEQAAEFAGA 336 (367)
Q Consensus 309 l~~~l~~~~v~vi~g~~~~~~l~enl~a 336 (367)
+++....+ +.++||..+++++.+..+.
T Consensus 97 ~~~~~~~~-~~~~~G~~t~~E~~~A~~~ 123 (206)
T PRK09140 97 IRRAVALG-MVVMPGVATPTEAFAALRA 123 (206)
T ss_pred HHHHHHCC-CcEEcccCCHHHHHHHHHc
Confidence 34444444 6789999999988887643
No 224
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=29.19 E-value=3.5e+02 Score=26.61 Aligned_cols=84 Identities=10% Similarity=-0.077 Sum_probs=56.2
Q ss_pred eeEEEEecCCCCChHHHHHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHH
Q 017732 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (367)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~ 241 (367)
.++.++-.|-+ .+-++.+.+|++.-.|. ..|=|.++...+.++++. .-++++|+...-.---.+-..+.+.
T Consensus 232 ~~l~~iEeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 46666665532 22367788888887666 667777888888888664 2478888765543211112248899
Q ss_pred HHHhCCeEEeccc
Q 017732 242 CDELGITLIAYCP 254 (367)
Q Consensus 242 ~~~~gi~via~~p 254 (367)
|+.+|+.++.++.
T Consensus 304 A~~~gi~~~~h~~ 316 (404)
T PRK15072 304 AALYQVRTGSHGP 316 (404)
T ss_pred HHHcCCceeeccC
Confidence 9999999987644
No 225
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=29.02 E-value=1.9e+02 Score=31.89 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHhcC--------------------------CCceeEEEEecCCC----CChHHHHHHHHHHHHcC
Q 017732 141 RLGRQSVLAALKDSLFRLG--------------------------LSSVELYQLHWAGI----WGNEGFIDGLGDAVEQG 190 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~--------------------------~dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G 190 (367)
+..+.++.+.++..|+.++ +....+++|..|.. .....+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4567788889999999887 34567888888753 22468999999999999
Q ss_pred CccEEeecCCCHHHHHHHHHH
Q 017732 191 LVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~~~ 211 (367)
+ ++=+.+|+-++.+.+.+.
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 8 888999999998888665
No 226
>PRK07534 methionine synthase I; Validated
Probab=29.00 E-value=5.2e+02 Score=24.77 Aligned_cols=151 Identities=15% Similarity=0.045 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchH----HHHHHHHH---hccCCCCCCcEEEEeccCCCCC------
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE----TLLGRFIK---ERKQRDPEVEVTVATKFAALPW------ 140 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE----~~lG~al~---~~~~~~~R~~~~I~tK~g~~~~------ 140 (367)
++...++=+..+++|-+.|=|..+..+....+...+| +++-.+++ +...+. ..+++|+.-+|+...
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~-~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKA-GRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEecCCCccccCCCC
Confidence 4666666667789999999876543331000000012 22222222 111000 236889888887421
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCC------CHHHHHHHHHHHHh
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY------SEKRLRNAYEKLKK 214 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~------~~~~l~~~~~~~~~ 214 (367)
..+.+.+.......++.|--.-+|++++--. ....|+...++.+++.++=-.+.++.. +...++++++.++.
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKAGGADVLWVETI--SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 1456778888888888885456999999754 246777777777777776555555432 11345555555543
Q ss_pred cCCCeeEeccccc
Q 017732 215 RGIPLASNQVNYS 227 (367)
Q Consensus 215 ~~~~~~~~q~~~n 227 (367)
.+..++++-+++.
T Consensus 201 ~~~~~~avGvNC~ 213 (336)
T PRK07534 201 LGEPPLAFGANCG 213 (336)
T ss_pred cCCCceEEEecCC
Confidence 3334566666654
No 227
>PLN00191 enolase
Probab=28.90 E-value=4.2e+02 Score=26.73 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEe-ec-CCCHHHHHHHHHHHHhcCCCee
Q 017732 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG-VS-NYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 143 ~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iG-vS-~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
+++.+.+-+.+.+ +..++.++-.|-. ++-|+.+.+|.++.+|.-+| =+ ..+++.+.++++. .-.+
T Consensus 296 s~~e~i~~~~~L~-----~~y~I~~IEDPl~---~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad 362 (457)
T PLN00191 296 SGDELIDLYKEFV-----SDYPIVSIEDPFD---QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACN 362 (457)
T ss_pred CHHHHHHHHHHHh-----hcCCcEEEECCCC---cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCC
Confidence 5554444444333 3335777777643 33477777788888887666 22 2567888887664 3467
Q ss_pred EeccccccccCCcchhcHHHHHHHhCCeEEec
Q 017732 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 221 ~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~ 252 (367)
++++..|-.-.=.+..++.+.|+++|+.++.-
T Consensus 363 ~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 363 ALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 77776664443223335899999999999763
No 228
>PLN02591 tryptophan synthase
Probab=28.40 E-value=3.7e+02 Score=24.64 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceeEEEEecCCC---CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEecc
Q 017732 148 LAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~lH~p~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (367)
.+...+.++.|--..+|++-|--|-. .+-.-+.++-.+..+.| .+.+.+.+++...+.....|-+++.
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G---------~~~~~~~~~~~~~r~~~~~p~ilm~ 85 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKG---------TTLDSVISMLKEVAPQLSCPIVLFT 85 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCCCEEEEe
Q ss_pred ccccccCCcchhcHHHHHHHhCC
Q 017732 225 NYSLIYRKPEENGVKAACDELGI 247 (367)
Q Consensus 225 ~~n~~~~~~~~~~~~~~~~~~gi 247 (367)
.||++.+...++ +++.|++.|+
T Consensus 86 Y~N~i~~~G~~~-F~~~~~~aGv 107 (250)
T PLN02591 86 YYNPILKRGIDK-FMATIKEAGV 107 (250)
T ss_pred cccHHHHhHHHH-HHHHHHHcCC
No 229
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=28.19 E-value=2.4e+02 Score=25.42 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHc-CCccEEeecCC-----CHHHHHHHHHHHHhcCCCeeEeccccccccCCcch-----hcHHHHHHH
Q 017732 176 NEGFIDGLGDAVEQ-GLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-----NGVKAACDE 244 (367)
Q Consensus 176 ~~~~~~~L~~l~~~-G~ir~iGvS~~-----~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-----~~~~~~~~~ 244 (367)
++.+.++++.+++. |++--+|+.+. ..+++..+++.++..|++..++-.-..--+..+.. ..+.+.|++
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 45677788888765 56667787652 34788899999998888766555444333433321 257888888
Q ss_pred hCCeEEe
Q 017732 245 LGITLIA 251 (367)
Q Consensus 245 ~gi~via 251 (367)
.|++-||
T Consensus 93 ~~~g~IA 99 (223)
T PF06415_consen 93 IGIGRIA 99 (223)
T ss_dssp HTCTEEE
T ss_pred hCCceEE
Confidence 8888765
No 230
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.12 E-value=4.9e+02 Score=24.18 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHC-CCCeEeCCCC
Q 017732 73 KMKAAKAAFDTSLDN-GITFFDTAEV 97 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gi~~~DTA~~ 97 (367)
+.++-.++++.-++. |++.|+....
T Consensus 17 s~e~K~~i~~~L~~~~Gv~~IEvg~~ 42 (280)
T cd07945 17 SPSEKLNIAKILLQELKVDRIEVASA 42 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEecCC
Confidence 446777777775554 9999998754
No 231
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.00 E-value=5.6e+02 Score=24.74 Aligned_cols=92 Identities=9% Similarity=0.111 Sum_probs=60.3
Q ss_pred EEEEecCCC------------CChHHHHHHHHHHHHc-CC---ccEEeec--CCCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
.+-||.|+. ++.+++++++.++.++ |+ ++|+=+. |.+.++++++.+.++..+ ..++-++|
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~--~kVnLIPy 292 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLD--CKINVIPL 292 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCC--CcEEEEcc
Confidence 367788764 3468899999877644 22 2244343 457788888888877543 56777888
Q ss_pred ccccC---Ccch---hcHHHHHHHhCCeEEeccccccc
Q 017732 227 SLIYR---KPEE---NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 227 n~~~~---~~~~---~~~~~~~~~~gi~via~~pl~~G 258 (367)
|.-.. .+.. ..+.+..+++||.+......|.-
T Consensus 293 N~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~d 330 (342)
T PRK14465 293 NTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKD 330 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcC
Confidence 87431 1111 13566678889999998888754
No 232
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=27.89 E-value=3e+02 Score=22.04 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=42.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCC--CceeEEEEecCCC--CChHHHHHHHHHHHHc
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~--dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (367)
|=-+.|+-|++. ....+..+++.+.+.++.... .-.|++++..+.. .+..++.+.|..|.+.
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 556778888543 246688888888888875443 3469999998764 4466666666666543
No 233
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=27.68 E-value=4.1e+02 Score=23.14 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHCCCCeEe
Q 017732 73 KMKAAKAAFDTSLDNGITFFD 93 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~D 93 (367)
|.+++.++++.+++.|+...|
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~ 29 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQD 29 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 468899999999999976554
No 234
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=27.65 E-value=3.2e+02 Score=22.82 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcC--CCceeEEEEecCCC--CChHHHHHHHHHHHHc
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~--~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (367)
|=-+.|+-|++. ....+..+++.+.+.++.+. ....|++++-.+.. .+..++.+.|..|.++
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 566778888753 24567788888888877543 23348888877654 4567788888877665
No 235
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=27.53 E-value=2.5e+02 Score=25.36 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHhcCC--------------------------CceeEEEEecCCC-C---ChHHHHHHHHHHHHcC
Q 017732 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI-W---GNEGFIDGLGDAVEQG 190 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~--------------------------dyiDl~~lH~p~~-~---~~~~~~~~L~~l~~~G 190 (367)
+.+...+++.+++.-++|+. -..+++.+..|-. . ....+.+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 45677778888888888774 2234455444422 1 2457889999999999
Q ss_pred CccEEeecCCCHHHHHHHHH
Q 017732 191 LVKAVGVSNYSEKRLRNAYE 210 (367)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~~ 210 (367)
+ .+=+|+|..+.++++.+
T Consensus 184 r--~viFSSH~m~EvealCD 201 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCD 201 (245)
T ss_pred c--EEEEecccHHHHHHhhh
Confidence 5 67789998888887754
No 236
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=27.47 E-value=5.8e+02 Score=24.80 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=71.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH
Q 017732 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (367)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~ 150 (367)
.++.++..++++.+.+.|++.|-- .| |+....+.=.+++ +.+++... -..+.|.|-.- .. . +.
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~---tG-GEPllr~dl~eli-~~l~~~~g---i~~i~itTNG~----lL-~----~~ 151 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRL---TG-GEPTLRKDIEDIC-LQLSSLKG---LKTLAMTTNGI----TL-S----RK 151 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE---EC-CCCcchhhHHHHH-HHHHhcCC---CceEEEeeCcc----hH-H----HH
Confidence 367789999999888999988742 33 4221111111222 22222210 12456666431 11 1 22
Q ss_pred HHHHHHhcCCCceeEEEEecCCC---------CChHHHHHHHHHHHHcCCc--c--EEeecCCCHHHHHHHHHHHHhcCC
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~---------~~~~~~~~~L~~l~~~G~i--r--~iGvS~~~~~~l~~~~~~~~~~~~ 217 (367)
+ ..|+..|++.+-+ -|+..++ ...+.+++.++.+++.|.. + .+-+..++.+++.++++.++..++
T Consensus 152 ~-~~L~~aGld~VnI-SLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi 229 (373)
T PLN02951 152 L-PRLKEAGLTSLNI-SLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI 229 (373)
T ss_pred H-HHHHhCCCCeEEE-eeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC
Confidence 2 2345566555432 2233322 1246788888888888852 2 233345677778888887766553
Q ss_pred CeeEeccccccc
Q 017732 218 PLASNQVNYSLI 229 (367)
Q Consensus 218 ~~~~~q~~~n~~ 229 (367)
.+..++|.++
T Consensus 230 --~vr~ie~mP~ 239 (373)
T PLN02951 230 --NVRFIEFMPF 239 (373)
T ss_pred --eEEEEEcccC
Confidence 3333344443
No 237
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=27.41 E-value=1.6e+02 Score=27.84 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHCCCC-eEeCCCCcCCCCCCCCCchHHHHHHHHH---hccCCCCCCcEEEEeccCCCCC-CCCHHHHHH
Q 017732 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPW-RLGRQSVLA 149 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~-~~DTA~~Yg~g~s~~~~~sE~~lG~al~---~~~~~~~R~~~~I~tK~g~~~~-~~~~~~i~~ 149 (367)
+...++++.|.+.|+. .||.=+.+-. +.++--+.+ ..... +..++++--. + .-+++.+.+
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~~--~~~vg~tlQa----YL~~t~~~l~~ 156 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNKG--WPNVGITLQA----YLKRTPDDLER 156 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGTT----SEEEEEET----TBTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhCC--CCeEEEEEec----hhhchHHHHHH
Confidence 4577888899999998 5675544433 444433333 12211 3455555554 2 234666666
Q ss_pred HHHHHHHhcCCCceeEEEEe---------------cCCC---CC---hHHHHHHHHHHHHcCC-c--cEEeecCCCHHHH
Q 017732 150 ALKDSLFRLGLSSVELYQLH---------------WAGI---WG---NEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRL 205 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH---------------~p~~---~~---~~~~~~~L~~l~~~G~-i--r~iGvS~~~~~~l 205 (367)
.++.+-+ .|. .+-+=++- +++. .. .+.....+..+..++. - -+++|.+|+...+
T Consensus 157 l~~~a~~-~g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si 234 (313)
T PF01619_consen 157 LLELARR-RGF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSI 234 (313)
T ss_dssp HHHHHHH-TTS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHH
T ss_pred HHHHHHH-cCC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHH
Confidence 6655443 231 23332221 1111 11 2334455555554444 3 6899999999999
Q ss_pred HHHHHHHHhcCCCe----eEeccccccccCCcchhcHHHHHHHhCCeEEecccccc
Q 017732 206 RNAYEKLKKRGIPL----ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (367)
Q Consensus 206 ~~~~~~~~~~~~~~----~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~ 257 (367)
..+.+.++..++++ ...|.-|.+.+ ++-....+.|..|.-|.|+|.
T Consensus 235 ~~a~~l~~~~~~~~~~~~~efq~L~Gm~d------~l~~~L~~~g~~v~~YvP~G~ 284 (313)
T PF01619_consen 235 ALALELAEELGIPPNDDRVEFQQLYGMAD------DLSRALAQAGYRVRKYVPYGP 284 (313)
T ss_dssp HHHHHHHHCTT-GG--GGEEEEEETTSSH------HHHHHHHHHTSEEEEEEEESE
T ss_pred HHHHHHHHHcCCCcccccEEeehhccCCH------HHHHHHHhCCCCEEEEEecCC
Confidence 99999888877654 22333333322 377778889999999999984
No 238
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=27.34 E-value=3.4e+02 Score=27.67 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (367)
.+...+.+++.+++||++ +|.+. ..-+....+.+.+.+++|+++|.|-
T Consensus 67 ~~~~~~~~~~~l~~LgI~-~D~~~-~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 67 VDKYHEEFKDDWKWLNIS-FDRFI-RTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCCc-cCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 345667889999999997 47532 1112122566889999999999984
No 239
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.34 E-value=2.9e+02 Score=27.53 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCcc-----EEeecCCCH-----H-HHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCe
Q 017732 180 IDGLGDAVEQGLVK-----AVGVSNYSE-----K-RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (367)
Q Consensus 180 ~~~L~~l~~~G~ir-----~iGvS~~~~-----~-~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~ 248 (367)
++.|.+|.++|+|. +++...... . .-.++...++..++.-++.---+-.++|-.. -+....++.||.
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga--~m~keiE~~GIP 366 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 68899999999997 555554322 1 1224444556666654444334555665433 267778889999
Q ss_pred EEecccc
Q 017732 249 LIAYCPI 255 (367)
Q Consensus 249 via~~pl 255 (367)
++-+..+
T Consensus 367 vV~i~~~ 373 (431)
T TIGR01917 367 VVHICTV 373 (431)
T ss_pred EEEEeec
Confidence 9876544
No 240
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=27.22 E-value=3.4e+02 Score=28.46 Aligned_cols=96 Identities=17% Similarity=0.041 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEe-cCCCCChHHHHHHHHHHHHcCCccEEeec-CCCHHHHHHHHHHHHhcCCCe
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH-~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.+.+.++... .+|.||+=+.+.. .|...+.+.+...+.+....-.++.+||- |-+++.+.++.+. ..+
T Consensus 11 t~~eda~~a~-----~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~l 80 (610)
T PRK13803 11 KDSALISKAV-----DMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGI 80 (610)
T ss_pred CcHHHHHHHH-----HcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCC
Confidence 3455555544 5999999998655 34445555523333333333357789985 6788888877665 578
Q ss_pred eEeccccccccCCcchhcHHHHHHHhCCeEE
Q 017732 220 ASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
+++|+.-+.-. ...+.++..++.++.++
T Consensus 81 d~vQLHG~e~~---~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 81 DFVQLHGAESK---AEPAYCQRIYKKSIKKI 108 (610)
T ss_pred CEEEECCCCCc---ccHHHHHHhhhcCCcEE
Confidence 99999753211 00124444444456555
No 241
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.13 E-value=4.6e+02 Score=24.32 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=10.9
Q ss_pred cHHHHHHHhCCeEEec
Q 017732 237 GVKAACDELGITLIAY 252 (367)
Q Consensus 237 ~~~~~~~~~gi~via~ 252 (367)
++.+.|+++||..|-.
T Consensus 138 ~~~~~~~~~gi~~I~l 153 (265)
T COG0159 138 ELLKAAEKHGIDPIFL 153 (265)
T ss_pred HHHHHHHHcCCcEEEE
Confidence 4777777777776643
No 242
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=27.13 E-value=5.3e+02 Score=24.22 Aligned_cols=171 Identities=14% Similarity=0.042 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCC-------CCCCCCCchHHHHHHHHH---hccCCCCCCcEEEEeccCCCC----
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALP---- 139 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-------g~s~~~~~sE~~lG~al~---~~~~~~~R~~~~I~tK~g~~~---- 139 (367)
++...++-+..+++|-+.|.|.....+ |.+ ....+++...+++ +...+..+.+++|+.-+|+..
T Consensus 45 Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~--~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~ 122 (304)
T PRK09485 45 PELIYQVHLDYFRAGADCAITASYQATFQGFAARGLS--EAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLA 122 (304)
T ss_pred hHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccC
Confidence 455566767778999999998865443 211 0011333333332 111000122588988888732
Q ss_pred --------CCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHc--CCccEEeecCC------CHH
Q 017732 140 --------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNY------SEK 203 (367)
Q Consensus 140 --------~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~------~~~ 203 (367)
+..+.+.+++...+..+.|--..+|++++--. ....|+..+++.+++. ++--.+.++.. +..
T Consensus 123 ~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~--~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~ 200 (304)
T PRK09485 123 DGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETI--PNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGT 200 (304)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecc--CCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCC
Confidence 12467888888888888886567999999754 2456666666666655 54444444421 123
Q ss_pred HHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHH-hCCeEEec
Q 017732 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE-LGITLIAY 252 (367)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~-~gi~via~ 252 (367)
.++++++.+... ..++++-+++. .+..- ..+++...+ .+..+++|
T Consensus 201 ~~~~~~~~l~~~-~~~~~iGiNC~--~p~~~-~~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 201 PLAEAAALLAAS-PQVVAVGVNCT--APELV-TAAIAALRAVTDKPLVVY 246 (304)
T ss_pred CHHHHHHHHhcC-CCceEEEecCC--CHHHH-HHHHHHHHhccCCcEEEE
Confidence 355565554322 23666666664 33211 124444433 24556555
No 243
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=26.97 E-value=5.6e+02 Score=24.44 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHC-CCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 74 ~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
.++..+++++..+. |++-+-- .| |+... .+...+.+.++.......-..+-|.|+.. ...+..+...+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~l---sG-GDPLl--~~d~~L~~ll~~L~~i~~~~~IRi~tr~~----~~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILI---SG-GDPLM--AKDHELEWLLKRLEEIPHLVRLRIGTRLP----VVIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEE---EC-Ccccc--CCHHHHHHHHHHHHhcCCccEEEeecCCC----ccCchhcCHHHH
Confidence 46677777776543 7775532 22 21110 11333334443321100013566777752 122344445566
Q ss_pred HHHHhcCCCceeEEEEecCCC-CChHHHHHHHHHHHHcCC
Q 017732 153 DSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (367)
Q Consensus 153 ~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ 191 (367)
+.|++.+...+.+ .|.-.. .-.+++.++++.|++.|.
T Consensus 214 ~~L~~~~~~~~~v--sh~nh~~Ei~~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 214 ELLASFELQLMLV--THINHCNEITEEFAEAMKKLRTVNV 251 (331)
T ss_pred HHHHhcCCcEEEE--ccCCChHhCCHHHHHHHHHHHHcCC
Confidence 6677766544333 233211 124667777777777774
No 244
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=26.90 E-value=5.9e+02 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=18.9
Q ss_pred HHHHHhcCCCe-EEecCCCCHHHHHHHHhhh
Q 017732 308 GLNWLLAQDNV-VPIPGAKNAEQAAEFAGAL 337 (367)
Q Consensus 308 al~~~l~~~~v-~vi~g~~~~~~l~enl~a~ 337 (367)
.++|.-+++.. +|++.--+.++|.+..+..
T Consensus 129 ~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 129 TAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred HHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 55666666633 6777766777666666554
No 245
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=26.82 E-value=57 Score=32.05 Aligned_cols=143 Identities=14% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHCCCCe-EeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEec--------cCCCCCCCCH
Q 017732 74 MKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATK--------FAALPWRLGR 144 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~-~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK--------~g~~~~~~~~ 144 (367)
.++=.+-++.|.+.|-.. .|-+. -|+ -..+-+.+-+. ..+-|-|- .+....+.+.
T Consensus 75 ~~~E~~K~~~A~~~GADtvMDLSt-ggd---------l~~iR~~il~~------~~vpvGTVPiYqa~~~~~~~~~~~t~ 138 (420)
T PF01964_consen 75 IEEELEKLKIAEKAGADTVMDLST-GGD---------LDEIRRAILEN------SPVPVGTVPIYQAAIRKGGSIVDMTE 138 (420)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE----STT---------HHHHHHHHHHT-------SS-EEE-HHHHHHHHTTT-GGG--H
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC-CCC---------HHHHHHHHHHh------CCCccccchHHHHHHHhCCChhhCCH
Confidence 344456678999999874 46542 233 44444544332 23444331 1111246788
Q ss_pred HHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEecc
Q 017732 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (367)
Q Consensus 145 ~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (367)
+.+.+.+++..+ |-+|.+-+|.- -+.+.++.++++|++- |+-+....-+..++..-+
T Consensus 139 d~~~~~ie~qa~----~GVDfmtiH~g------it~~~~~~~~~~~R~~--giVSRGGs~l~~WM~~n~----------- 195 (420)
T PF01964_consen 139 DDFFDVIEKQAK----DGVDFMTIHCG------ITRETLERLKKSGRIM--GIVSRGGSILAAWMLHNG----------- 195 (420)
T ss_dssp HHHHHHHHHHHH----HT--EEEE-TT--------GGGGGGGT--TSSS------HHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHH----cCCCEEEEccc------hhHHHHHHHhhhcccc--CccccchHHHHHHHHhcC-----------
Confidence 889998888877 45788899983 2467788888888655 444444455555543311
Q ss_pred ccccccCCcchhcHHHHHHHhCCeEEecccccccccc
Q 017732 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 261 (367)
Q Consensus 225 ~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~ 261 (367)
.=|++..... .+++.|+++++.+- ||.|+-.
T Consensus 196 ~ENPly~~fD--~lLeI~k~yDVtLS----LGDglRP 226 (420)
T PF01964_consen 196 KENPLYEHFD--RLLEIAKEYDVTLS----LGDGLRP 226 (420)
T ss_dssp S--HHHHTHH--HHHHHHTTTT-EEE----E--TT--
T ss_pred CcCcHHHhHH--HHHHHHHHhCeeEe----cccccCC
Confidence 2345554433 49999999999874 6666543
No 246
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=26.81 E-value=2.2e+02 Score=25.87 Aligned_cols=107 Identities=9% Similarity=0.117 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCC----CChHHHHHHHHHHHHcCC-ccEEeecCC------CHHHHHHHHHHH
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKL 212 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G~-ir~iGvS~~------~~~~l~~~~~~~ 212 (367)
++.+..+++...+. .- .+- ++++.-.. .......+.+++|++.|. |..||+-.| ++..+...++..
T Consensus 102 ~~~i~~af~~ar~~-~P-~a~-l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~ 178 (254)
T smart00633 102 EDYIEKAFRYAREA-DP-DAK-LFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRF 178 (254)
T ss_pred hHHHHHHHHHHHHh-CC-CCE-EEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHH
Confidence 46666666655433 21 122 23343221 124467899999999998 999998555 467788888777
Q ss_pred HhcCCCeeEeccccccccCCc----chhcHHHHHHHhC--CeEEecc
Q 017732 213 KKRGIPLASNQVNYSLIYRKP----EENGVKAACDELG--ITLIAYC 253 (367)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~----~~~~~~~~~~~~g--i~via~~ 253 (367)
...+.++.+-.+.+....... .-..+++.|.++. .+|+-|.
T Consensus 179 ~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg 225 (254)
T smart00633 179 ASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWG 225 (254)
T ss_pred HHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeC
Confidence 777777666555554322100 1125888888874 5555553
No 247
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=26.70 E-value=77 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCCeEeCCCCcCC
Q 017732 74 MKAAKAAFDTSLDNGITFFDTAEVYGS 100 (367)
Q Consensus 74 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 100 (367)
.+.+.+....+++.|++.||.+..|..
T Consensus 76 ~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 76 HGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred hhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 467888888999999999999999854
No 248
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=26.36 E-value=3.1e+02 Score=21.30 Aligned_cols=74 Identities=16% Similarity=0.032 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCe-EeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHH
Q 017732 71 DRKMKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (367)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gi~~-~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~ 149 (367)
+.+.++..+.|++.+..|.+. ++-|+.= + +|...+-.-|++.. ...+++.+..
T Consensus 10 ~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r---------------------~----~r~~~W~mW~~p~~-~~~~~~~Vl~ 63 (99)
T PF00101_consen 10 PLTDEEIAKQVRYLLSQGWIIGIEHADPR---------------------R----FRTSYWQMWKLPMF-GCTDPAQVLA 63 (99)
T ss_dssp ---HHHHHHHHHHHHHTT-EEEEEEESCG---------------------G----STSSS-EEESSEBT-TBSSHHHHHH
T ss_pred CCCHHHHHHHHHhhhhcCceeeEEecCCC---------------------C----CCCCEeecCCCCCc-CCCCHHHHHH
Confidence 356788999999999999885 5433211 1 14455655566432 2467899999
Q ss_pred HHHHHHHhcCCCceeEEEEec
Q 017732 150 ALKDSLFRLGLSSVELYQLHW 170 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~ 170 (367)
.|++.++.-.-+||=|+=+..
T Consensus 64 el~~c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 64 ELEACLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp HHHHHHHHSTTSEEEEEEEET
T ss_pred HHHHHHHhCCCceEEEEEEcC
Confidence 999999999999988866554
No 249
>PTZ00081 enolase; Provisional
Probab=26.24 E-value=4.9e+02 Score=26.06 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC--CccEEee--cCCCHHHHHHHHHHHHhcCC
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGV--SNYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~~ 217 (367)
.+++.+.+-+.+.++.+ +++++-.|-. ++-|+.+.+|.++= .|.-+|= +..+++.+.++++. .
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~---~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~ 347 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFD---QDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----K 347 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCC---cccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----C
Confidence 56776777666666665 4567776643 23355666665543 5554443 23568888888765 3
Q ss_pred CeeEeccccccccCCcchhcHHHHHHHhCCeEEec
Q 017732 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~ 252 (367)
-.+++|+..|-.-.=.+..+++..|+++|+.++.-
T Consensus 348 aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 348 ACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred CCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 46777777665433223335899999999998863
No 250
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.21 E-value=8.8e+02 Score=26.46 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHc--CCccEEeecCCCHHHHHHHHHHHHhcCCCe
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (367)
.+.+.+++-++...........-+|+|+..+.... +.+.+|.+..++ ..+++|-++|.....+..+..
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS--------- 168 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-HAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS--------- 168 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-HHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh---------
Confidence 34556666665544333223457888887765443 456666666666 589999999875443333332
Q ss_pred eEeccccccccCCcchhcHHHHHHHhCCe
Q 017732 220 ASNQVNYSLIYRKPEENGVKAACDELGIT 248 (367)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~~~~~~~~~gi~ 248 (367)
-|.+++|..+....-..-+...|++.||.
T Consensus 169 RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 169 RCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred heEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 23445555554432111233445555654
No 251
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=26.14 E-value=3.5e+02 Score=22.62 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=37.8
Q ss_pred EEeecCCCH--HHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEecccccccc
Q 017732 194 AVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 194 ~iGvS~~~~--~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~ 259 (367)
-+|...|+. ..+..+... .-|++ .|..+.+.++ +.+..+-++++.++..|.+.++.
T Consensus 19 k~GlDgHd~gakvia~~l~d-----~GfeV---i~~g~~~tp~--e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 19 KLGLDGHDRGAKVIARALAD-----AGFEV---INLGLFQTPE--EAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred ccCccccccchHHHHHHHHh-----CCceE---EecCCcCCHH--HHHHHHHhcCCCEEEEEeccchH
Confidence 457777743 455555433 23555 3444566665 48999999999999999998874
No 252
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=26.04 E-value=3.7e+02 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=23.3
Q ss_pred cCCCCHHHHHHHHhhhCC-CCCHHHHHHHHH
Q 017732 322 PGAKNAEQAAEFAGALGW-RLTDEEVNELRS 351 (367)
Q Consensus 322 ~g~~~~~~l~enl~a~~~-~L~~e~~~~l~~ 351 (367)
.|..++..+...++++.. -.++++++.|-.
T Consensus 270 ~gled~~~l~~l~~~L~~~G~~e~~i~~i~~ 300 (313)
T COG2355 270 DGLEDVGKLPNLTAALIERGYSEEEIEKIAG 300 (313)
T ss_pred hhhcChhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 477788888888888865 599998887743
No 253
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.97 E-value=4.7e+02 Score=23.25 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhcCCCc--eeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeE
Q 017732 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dy--iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
...+.+.+++.+++++..+ +++++... . .+.+...+.++.+..++ +..|=+...+...+...++.+...++|+..
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTA-S-NDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcC-C-CCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 4557777888888886544 34444322 1 23344444455555543 566666655444444444445555565443
No 254
>PRK05406 LamB/YcsF family protein; Provisional
Probab=25.91 E-value=2.4e+02 Score=25.81 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=44.9
Q ss_pred cccccccCCCCCCCCCCCchhhHHHHHHHHHHH-HHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 017732 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (367)
Q Consensus 52 glGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A-~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~ 130 (367)
+||.|.+|.+ ++...+|..| +.+|. +.|+ ...+-+.++-.. ...|-
T Consensus 13 ~fG~w~~g~D-------------~~lmp~IssANIACG~-------HAGD---------p~~M~~tv~lA~----~~gV~ 59 (246)
T PRK05406 13 SFGAWKMGDD-------------EALLPLVTSANIACGF-------HAGD---------PAVMRRTVRLAK----ENGVA 59 (246)
T ss_pred CCCCCCCCCH-------------HHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCe
Confidence 6788887654 7777777777 35565 6666 666666665433 23455
Q ss_pred EEeccCCC--------CCCCCHHHHHHHHHHHHHhc
Q 017732 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (367)
Q Consensus 131 I~tK~g~~--------~~~~~~~~i~~~l~~SL~~L 158 (367)
|-..-|.+ ....+++.++..+...+-.|
T Consensus 60 IGAHPgypD~~gFGRR~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 60 IGAHPGYPDLEGFGRRNMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred EccCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 54444432 13467777777766665555
No 255
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=25.84 E-value=1.5e+02 Score=21.99 Aligned_cols=27 Identities=7% Similarity=0.170 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHH
Q 017732 284 RNLQPLLNRIKELGENYSKTSTQVGLN 310 (367)
Q Consensus 284 ~~~~~~~~~l~~ia~~~~~s~~q~al~ 310 (367)
++.++.+.+|.++|.+.|++.+++|.-
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 446788889999999999999998753
No 256
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=25.84 E-value=8.6e+02 Score=26.21 Aligned_cols=109 Identities=8% Similarity=0.078 Sum_probs=59.2
Q ss_pred CcEEEEeccCCCCC---CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC-------CChHHHHHHHHHHHHcCCccEEe
Q 017732 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVG 196 (367)
Q Consensus 127 ~~~~I~tK~g~~~~---~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~-------~~~~~~~~~L~~l~~~G~ir~iG 196 (367)
+++-|..|+....+ ..+.+... .+-+-|+..|+|+||+ |.... ....-......++|+.=+|--++
T Consensus 617 ~~~~v~~ri~~~~~~~~g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 692 (765)
T PRK08255 617 AEKPMSVRISAHDWVEGGNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIA 692 (765)
T ss_pred CCCeeEEEEccccccCCCCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEE
Confidence 46788889865322 23444443 3444567788777765 42111 00011123335566655666777
Q ss_pred ecCC-CHHHHHHHHHHHHhcCCCeeEeccc-cccccCCcchhcHHHHHHHhCCe
Q 017732 197 VSNY-SEKRLRNAYEKLKKRGIPLASNQVN-YSLIYRKPEENGVKAACDELGIT 248 (367)
Q Consensus 197 vS~~-~~~~l~~~~~~~~~~~~~~~~~q~~-~n~~~~~~~~~~~~~~~~~~gi~ 248 (367)
+.+. +++..+++++. ...|.+.+- --+.++.. +...+++.++.
T Consensus 693 ~G~i~~~~~a~~~l~~-----g~~D~v~~gR~~l~dP~~----~~~~~~~~~~~ 737 (765)
T PRK08255 693 VGAISEADHVNSIIAA-----GRADLCALARPHLADPAW----TLHEAAEIGYR 737 (765)
T ss_pred eCCCCCHHHHHHHHHc-----CCcceeeEcHHHHhCccH----HHHHHHHcCCC
Confidence 7776 67777777654 245555543 22333322 56677777776
No 257
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=25.79 E-value=5.7e+02 Score=24.11 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccc
Q 017732 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
++.++.++.+.++..++++.+.+..+|. ..+-..+++.|+.++...|++.+
T Consensus 237 s~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 237 GAQRLHEIRTQLVEQKATCVFAEPQFRP-------AVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCh-------HHHHHHHHhcCCeEEEecccccc
Confidence 6788999999998888888777665543 12445677889998887888865
No 258
>PRK05985 cytosine deaminase; Provisional
Probab=25.77 E-value=6.1e+02 Score=24.48 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHCCCCeEe
Q 017732 75 KAAKAAFDTSLDNGITFFD 93 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~D 93 (367)
..+...++.++..|++++-
T Consensus 98 ~~a~~~~~~~l~~G~t~vr 116 (391)
T PRK05985 98 ERALALARAAAAAGTTAMR 116 (391)
T ss_pred HHHHHHHHHHHhcCcceEE
Confidence 4566778999999999873
No 259
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=25.66 E-value=4.2e+02 Score=22.59 Aligned_cols=83 Identities=14% Similarity=-0.027 Sum_probs=49.9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC
Q 017732 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (367)
Q Consensus 111 ~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G 190 (367)
+.+|++|++.... -|.|.+|+++ ..++-.+.-.+.++.+.... +-+---..+...+++.++++.+
T Consensus 35 ~~~a~~L~~~~~~--~D~VL~Spa~----------Ra~QTae~v~~~~~~~~~~~-~~~l~p~~d~~~~l~~l~~~~d-- 99 (163)
T COG2062 35 ELVAAWLAGQGVE--PDLVLVSPAV----------RARQTAEIVAEHLGEKKVEV-FEELLPNGDPGTVLDYLEALGD-- 99 (163)
T ss_pred HHHHHHHHhcCCC--CCEEEeChhH----------HHHHHHHHHHHhhCccccee-ccccCCCCCHHHHHHHHHHhcc--
Confidence 5689999987643 3667777766 24455555556676332222 2111111346677777777776
Q ss_pred CccEEeecCCCHHHHHHH
Q 017732 191 LVKAVGVSNYSEKRLRNA 208 (367)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~ 208 (367)
-+..+.+-.|+|..-+-+
T Consensus 100 ~v~~vllVgH~P~l~~l~ 117 (163)
T COG2062 100 GVGSVLLVGHNPLLEELA 117 (163)
T ss_pred cCceEEEECCCccHHHHH
Confidence 578899999987644333
No 260
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=25.48 E-value=4.2e+02 Score=26.27 Aligned_cols=106 Identities=23% Similarity=0.159 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
|+.|-+++++...+.+.+-++|.|-+.. ..-.+.+..-+++. ++++ ++++.+|.|+... .+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~---~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIA---EIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcH---HHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccccHHHHHHHHHH
Confidence 7777788776543333466777777642 22233344434433 3443 6889999987632 333444443
Q ss_pred H-HH------HcCCccEEeecC-CC---HHHHHHHHHHHHhcCCCeeEe
Q 017732 185 D-AV------EQGLVKAVGVSN-YS---EKRLRNAYEKLKKRGIPLASN 222 (367)
Q Consensus 185 ~-l~------~~G~ir~iGvS~-~~---~~~l~~~~~~~~~~~~~~~~~ 222 (367)
+ +. +.+.|--||..+ .+ ...+.++.+.++..|+++.++
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 3 22 234577888643 12 244555555566667655444
No 261
>PRK09061 D-glutamate deacylase; Validated
Probab=25.47 E-value=7.3e+02 Score=25.25 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~S 154 (367)
++..++++.|++.|+..|=+...|-.+.+ ...+-+.++... +-...|...+-... ..+......++++.
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~-~~~~~~e~~av~~~ 237 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLS-NVDPRSSVDAYQEL 237 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCcc-cCCchhHHHHHHHH
Confidence 45777888999999999977655644333 555555555443 33566666653210 01222223334444
Q ss_pred HH---hcCCCceeEEEEecCC--CCChHHHHHHHHHHHHcCCccEEeecCCC
Q 017732 155 LF---RLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (367)
Q Consensus 155 L~---~L~~dyiDl~~lH~p~--~~~~~~~~~~L~~l~~~G~ir~iGvS~~~ 201 (367)
++ ..|. -+.+.|-.. .....+.++.+++++++|.--..-++-|.
T Consensus 238 i~lA~~~G~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 238 IAAAAETGA---HMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHhCC---CEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 33 3443 355556532 23467888999999999955545555444
No 262
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=25.39 E-value=1.4e+02 Score=28.38 Aligned_cols=61 Identities=23% Similarity=0.451 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCccEEeecCCCH-------HHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHH
Q 017732 179 FIDGLGDAVEQGLVKAVGVSNYSE-------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (367)
Q Consensus 179 ~~~~L~~l~~~G~ir~iGvS~~~~-------~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~ 242 (367)
+-++++++++.|.-|.+-+|-|.- ..+..+....+..+.+.+ +.|+++++.+.+.+++...
T Consensus 142 TEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~---~~wsiIdrW~t~~glIkaf 209 (395)
T KOG1321|consen 142 TEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERD---IKWSIIDRWPTREGLIKAF 209 (395)
T ss_pred cHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccC---CceEeeccccccchHHHHH
Confidence 456788899999999999886532 446666666666665444 4788888877666666544
No 263
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.39 E-value=4.4e+02 Score=24.50 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHhcCC--------------------------CceeEEEEecCCC----CChHHHHHHHHHHHHcC
Q 017732 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI----WGNEGFIDGLGDAVEQG 190 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~--------------------------dyiDl~~lH~p~~----~~~~~~~~~L~~l~~~G 190 (367)
+.....+++.++.-|+||.+ -..|++.|..|-. ...+-+-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 45677788888888888873 2345666655522 22344557788899999
Q ss_pred CccEEeecCCCHHHHHHHHHH
Q 017732 191 LVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 191 ~ir~iGvS~~~~~~l~~~~~~ 211 (367)
. .|=+|+|..++++++++.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 6 677899999999988664
No 264
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.31 E-value=2.2e+02 Score=26.78 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHhcCCCceeEEEEec-CCCCChHHH-----HHHHHHHHHcCCccEEeecCCCHHH----HHHHHHHHHhcCCCeeEecc
Q 017732 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKR----LRNAYEKLKKRGIPLASNQV 224 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~-p~~~~~~~~-----~~~L~~l~~~G~ir~iGvS~~~~~~----l~~~~~~~~~~~~~~~~~q~ 224 (367)
++-++-.++|++.+.. .......+. -+.+.+..++--=|++|+.+.++.. .+++.......+ +.- +
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~g--f~g--~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELG--FVG--V 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcC--ceE--E
Confidence 6778888999999884 211112222 2567778877788999999886653 333333333222 333 3
Q ss_pred ccccccCC----cch-hcHHHHHHHhCCeEEecccc
Q 017732 225 NYSLIYRK----PEE-NGVKAACDELGITLIAYCPI 255 (367)
Q Consensus 225 ~~n~~~~~----~~~-~~~~~~~~~~gi~via~~pl 255 (367)
..++..+. ... ..+++.|+++|+.|+-+.-.
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 33332221 111 24899999999999874433
No 265
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.22 E-value=6.7e+02 Score=24.77 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERK-QRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~-~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
.++.+.+..|++.|- ...|+.. .|-..+-+.+.+.+.+.. .+...+++||++-+.. +||-
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~q------------AIe~ 141 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQ------------AIEL 141 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccchH------------HHHH
Confidence 677788888888874 3455543 233345677777764432 2225789999887631 2222
Q ss_pred HHH--------------------------hcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeec-------CC
Q 017732 154 SLF--------------------------RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-------NY 200 (367)
Q Consensus 154 SL~--------------------------~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS-------~~ 200 (367)
.+. .|-+.|.|++ |+ .+.+--++.++.|.++..+--+=+. .|
T Consensus 142 ~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlL----Pe-~~weIDL~~veal~DENT~AivviNP~NPcGnVy 216 (447)
T KOG0259|consen 142 AISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLL----PE-KDWEIDLDGVEALADENTVAIVVINPNNPCGNVY 216 (447)
T ss_pred HHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeeccc----Cc-ccceechHHHHHhhccCeeEEEEeCCCCCCcccc
Confidence 222 2333344431 11 1112236778888888765544332 25
Q ss_pred CHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHH-hCCeEEeccccccccccCCCCCCC
Q 017732 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE-LGITLIAYCPIAQGALTGKYTPQN 268 (367)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~-~gi~via~~pl~~G~l~~~~~~~~ 268 (367)
+-++|+++.+.|++.++.+..-.+.-+....... .++..+= .-+.|+.-..+..|.+.--|+-.|
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCCCC---ccchhhccccCceEeecccccccccCCceeee
Confidence 6688999999888888776666665444443322 4444432 356777777777777766666555
No 266
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.16 E-value=5.8e+02 Score=23.97 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHH-HHHHH---HhccCCCCCCcEEEEeccCCCCCC---CCHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL-LGRFI---KERKQRDPEVEVTVATKFAALPWR---LGRQSV 147 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~-lG~al---~~~~~~~~R~~~~I~tK~g~~~~~---~~~~~i 147 (367)
+++.+.+..++..|-+.| .+|.|.| -.+ +-.+. ..... +++.+....-.|..... ...+.-
T Consensus 45 ~~a~~~~~~~l~~ggrl~----~~GaG~S------g~la~~dA~e~~~tf~~--~~~~~~~~iagg~~a~~~a~~~~ed~ 112 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLI----YMGAGTS------GRLGVLDASECPPTFSV--SPEMVIGLIAGGPEAMFTAVEGAEDD 112 (296)
T ss_pred HHHHHHHHHHHHcCCeEE----EECCchh------HHHHHHHHHhCcchhcC--CcccceeeeecCchHhhhcccccCCc
Confidence 445556667788898887 6788876 322 11111 11111 23443322222210000 000111
Q ss_pred HHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHH
Q 017732 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 208 (367)
.....+.|..++...=|+++.-.... ...+++++++.+++.| ++-|++++.....+.+.
T Consensus 113 ~~~~~~~l~a~~l~~~DvvI~IS~SG-~T~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~ 171 (296)
T PRK12570 113 PELGAQDLKAIGLTADDVVVGIAASG-RTPYVIGALEYAKQIG-ATTIALSCNPDSPIAKI 171 (296)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCC-CCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 22233344555655558888876543 3567999999999999 68899998866665544
No 267
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=25.08 E-value=3.3e+02 Score=21.10 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=41.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcC--CCceeEEEEecCCC--CChHHHHHHHHHHH
Q 017732 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAV 187 (367)
Q Consensus 126 R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~--~dyiDl~~lH~p~~--~~~~~~~~~L~~l~ 187 (367)
|=-+.|+-|+|. ...+..+++.+.+..+... ....|++++-.+.. .+..++.+.|..|.
T Consensus 42 RlGi~vsKK~g~---AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 42 RVGLSVSKKVKN---AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred EEEEEEecccCc---hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 566788888763 5667778888888777543 23589888888764 45677777777653
No 268
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=24.98 E-value=4.3e+02 Score=27.02 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC----------CccEEeecCCCHHHHHHHHH
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----------LVKAVGVSNYSEKRLRNAYE 210 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G----------~ir~iGvS~~~~~~l~~~~~ 210 (367)
.++.+.- ..|-+.|.++|+|+|.+-+ |.. ..+..++++.+.+.+ ..+-.+++....+.++.+.+
T Consensus 102 ~fs~eeK-i~Ia~~L~~~GVd~IEvG~---Pa~--s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~ 175 (503)
T PLN03228 102 SLTPPQK-LEIARQLAKLRVDIMEVGF---PGS--SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWE 175 (503)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEeC---CCC--CHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHH
Confidence 3555544 4466679999999888854 432 223344444444332 13344677777777877766
Q ss_pred HHHhcCCCeeEe-------ccccccccCCcch-----hcHHHHHHHhCCeEEeccc
Q 017732 211 KLKKRGIPLASN-------QVNYSLIYRKPEE-----NGVKAACDELGITLIAYCP 254 (367)
Q Consensus 211 ~~~~~~~~~~~~-------q~~~n~~~~~~~~-----~~~~~~~~~~gi~via~~p 254 (367)
.....+.+-..+ ++.+++- ...++ .+.+++++++|...+.+++
T Consensus 176 a~~~a~~~~V~i~i~~Sd~h~~~kl~-~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 176 ALKYAKRPRILAFTSTSDIHMKYKLK-KTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred hhcccCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 422212221111 2222221 11111 1477888989875444444
No 269
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=24.66 E-value=7.2e+02 Score=24.91 Aligned_cols=104 Identities=19% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC---hHHH---HHH
Q 017732 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGF---IDG 182 (367)
Q Consensus 110 E~~lG~al~~~~~~~~-R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~---~~~~---~~~ 182 (367)
|+-|-+++++.....| .+-++|.|-+.. ..-.+.+..-+++.-++.+ .+.++.+|.|+... .... .++
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~---~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTT---ALIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChH---HhhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 7788888877543332 234777777632 2223334444443333332 26799999988632 1222 222
Q ss_pred -HHHHH--------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCe
Q 017732 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 183 -L~~l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (367)
++.+. ..++|--||-.+. +..+.++...++..|+.+
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v 228 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQV 228 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeE
Confidence 23333 2467888885554 345566666666667554
No 270
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=24.58 E-value=2.7e+02 Score=29.49 Aligned_cols=178 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHH
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~S 154 (367)
|-+.++++.|-|.|++.+ ..|.. |..+.---.+. |+-|++.|. +.|-..--.+++.
T Consensus 43 EIaIRvFRa~tEL~~~tv---AiYse---------qD~~sMHRqKA------DEaY~iGk~------l~PV~AYL~idei 98 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTV---AIYSE---------QDRLSMHRQKA------DEAYLIGKG------LPPVGAYLAIDEI 98 (1176)
T ss_pred cchhHHHHHHhhhcceEE---EEEec---------cchhhhhhhcc------ccceecccC------CCchhhhhhHHHH
Q ss_pred HHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcC----CCeeEecccccccc
Q 017732 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG----IPLASNQVNYSLIY 230 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~----~~~~~~q~~~n~~~ 230 (367)
.+--+-.-+|.+. |...=..|--+.-....+.| |++||=|. +.+..+-+...... ....++-.-=.+..
T Consensus 99 i~iak~~~vdavH---PGYGFLSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~agVpvVPGTpgPit 171 (1176)
T KOG0369|consen 99 ISIAKKHNVDAVH---PGYGFLSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAGVPVVPGTPGPIT 171 (1176)
T ss_pred HHHHHHcCCCeec---CCccccccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcCCCccCCCCCCcc
Q ss_pred CCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHH
Q 017732 231 RKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLN 310 (367)
Q Consensus 231 ~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~ 310 (367)
.-.+ .+++|++.|..||--..+|+| .+.+..+....++.+.+....++...+
T Consensus 172 t~~E---A~eF~k~yG~PvI~KAAyGGG-------------------------GRGmRvVr~~e~vee~f~Ra~SEA~aa 223 (1176)
T KOG0369|consen 172 TVEE---ALEFVKEYGLPVIIKAAYGGG-------------------------GRGMRVVRSGEDVEEAFQRAYSEALAA 223 (1176)
T ss_pred cHHH---HHHHHHhcCCcEEEeecccCC-------------------------CcceEEeechhhHHHHHHHHHHHHHHh
Q ss_pred H
Q 017732 311 W 311 (367)
Q Consensus 311 ~ 311 (367)
|
T Consensus 224 F 224 (1176)
T KOG0369|consen 224 F 224 (1176)
T ss_pred c
No 271
>PRK12569 hypothetical protein; Provisional
Probab=24.55 E-value=2.8e+02 Score=25.40 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=46.3
Q ss_pred cccccccCCCCCCCCCCCchhhHHHHHHHHHHH-HHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 017732 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (367)
Q Consensus 52 glGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A-~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~ 130 (367)
+||.|.+|.. -+++...+|..| +.+|. +.|+ ...+-+.++-.. ...|-
T Consensus 14 sfG~~~~g~~-----------~D~~lmp~ItsaNIACG~-------HAGD---------p~~M~~tv~lA~----~~~V~ 62 (245)
T PRK12569 14 GFGPWRIGDG-----------VDEALMPLISSANIATGF-------HAGD---------PNIMRRTVELAK----AHGVG 62 (245)
T ss_pred CCCCcCCCCc-----------cHHHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCE
Confidence 6788888761 027777777777 35565 6676 666777665433 24455
Q ss_pred EEeccCCC--------CCCCCHHHHHHHHHHHHHhcC
Q 017732 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRLG 159 (367)
Q Consensus 131 I~tK~g~~--------~~~~~~~~i~~~l~~SL~~L~ 159 (367)
|-..-+.+ ....+++.++..+...+-.|+
T Consensus 63 IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 63 IGAHPGFRDLVGFGRRHINASPQELVNDVLYQLGALR 99 (245)
T ss_pred eccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 54444331 134677777777766665553
No 272
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=24.51 E-value=4.7e+02 Score=22.71 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHH
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGL 183 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L 183 (367)
++-+.+...++.+++.+|.+++..+.+|.....+.++.-+.+
T Consensus 127 ~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~~~~~~~~~~ 168 (184)
T PRK04930 127 YPMSDILRPFELTAAMCRMHWLSPIIIYWARRQSPEELASHA 168 (184)
T ss_pred CCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCCCHHHHHHHH
Confidence 467778888999999999999999999987654444443333
No 273
>PRK10508 hypothetical protein; Provisional
Probab=24.50 E-value=1e+02 Score=29.49 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHH
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~ 188 (367)
.+++.|.+.|++..+++|+|.+ +++.+. .+.++.++.++.|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~-~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI-FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC-CCHHHHHHHHHHHHH
Confidence 4789999999999999998877 233332 355666666655543
No 274
>PLN02428 lipoic acid synthase
Probab=24.32 E-value=6.6e+02 Score=24.34 Aligned_cols=165 Identities=15% Similarity=0.193 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeC-CC---CcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHH
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDT-AE---VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DT-A~---~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i 147 (367)
.+.++..++.+.+.+.|++++=- +. .|.++. -..+.+.++...... -.+.|..=.. .+..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~p--df~~d---- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALVP--DFRGD---- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeCc--cccCC----
Confidence 34566677888888899986632 11 233332 223334444432111 1333333111 11112
Q ss_pred HHHHHHHHHhcCCCceeEEEEecCCC------------CChHHHHHHHHHHHHc--CCcc----EEeecCCCHHHHHHHH
Q 017732 148 LAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAY 209 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~lH~p~~------------~~~~~~~~~L~~l~~~--G~ir----~iGvS~~~~~~l~~~~ 209 (367)
++.|++|.---+|.+ -|+++. ...++.++.|+.+++. |..- =+|+ .-+.+++.+.+
T Consensus 195 ----~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 195 ----LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred ----HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 223333333335663 366543 1357889999999998 7653 2466 45778888888
Q ss_pred HHHHhcCCCeeEe-cc--------ccccccCCcchhcHHHHHHHhCCeEEecccccc
Q 017732 210 EKLKKRGIPLASN-QV--------NYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (367)
Q Consensus 210 ~~~~~~~~~~~~~-q~--------~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~ 257 (367)
+.++..++.+..+ |. +.+.+-...+-..+-+.+.+.|...++.+||-.
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 8777766432222 21 111121111112466778888998888888864
No 275
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.30 E-value=2e+02 Score=22.75 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=11.8
Q ss_pred cHHHHHHHhCCeEEe
Q 017732 237 GVKAACDELGITLIA 251 (367)
Q Consensus 237 ~~~~~~~~~gi~via 251 (367)
++.+.|+++|+.++.
T Consensus 93 ~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 93 ELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHTT-EEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 588999999998874
No 276
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=24.12 E-value=6.4e+02 Score=24.16 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEe--ccccccccCCcchhcHHHHHHHhCCeEEecc
Q 017732 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--QVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 176 ~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~--q~~~n~~~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
.++.++.+.+..++=.|.-+ +-..+.+.+.+-.+.+...|+++.+. .--+.+++.. ..+.++|+++|+.+..+.
T Consensus 51 ~~~yv~~~l~~C~~~~Idv~-~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK---~~~y~~~~~~~ipvp~~~ 126 (329)
T PF15632_consen 51 GEEYVDWCLDFCKEHGIDVF-VPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDK---AAFYEFMEANGIPVPPYW 126 (329)
T ss_pred HHHHHHHHHHHHHHhCCeEE-EcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhH---HHHHHHHHhCCCCCCCEE
Confidence 34555555555555555544 33334444444444444444443331 1111122221 136777777777665554
Q ss_pred cc
Q 017732 254 PI 255 (367)
Q Consensus 254 pl 255 (367)
.+
T Consensus 127 ~v 128 (329)
T PF15632_consen 127 RV 128 (329)
T ss_pred Ee
Confidence 44
No 277
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.09 E-value=5.9e+02 Score=23.72 Aligned_cols=140 Identities=18% Similarity=0.177 Sum_probs=83.2
Q ss_pred HHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH-HH
Q 017732 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD-SL 155 (367)
Q Consensus 77 ~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~-SL 155 (367)
..++-....++|+|..|...+... . .+.++...-+-......+.+.++++++. .-
T Consensus 14 VA~Vt~~La~~g~NI~d~sq~~~~-------------------~-----~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~ 69 (280)
T TIGR00655 14 VAAISTFIAKHGANIISNDQHTDP-------------------E-----TGRFFMRVEFQLEGFRLEESSLLAAFKSALA 69 (280)
T ss_pred HHHHHHHHHHCCCCEEeeeEEEcC-------------------C-----CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 344555667999999997654422 0 1344443333221123567888888888 88
Q ss_pred HhcCCCceeEEEEecCCC--------CChHHHHHHHHHHHHcCCc--c-EEeecCCCHHHHHHHHHHHHhcCCCeeEecc
Q 017732 156 FRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--K-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (367)
Q Consensus 156 ~~L~~dyiDl~~lH~p~~--------~~~~~~~~~L~~l~~~G~i--r-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~ 224 (367)
+.++++ +.+|+.+. .+...-+++|.+..+.|.+ . ..=+||+. .+.. .++..++|+.+...
T Consensus 70 ~~~~l~----i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~--~~~~---~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 70 EKFEMT----WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE--DLRS---LVERFGIPFHYIPA 140 (280)
T ss_pred HHhCCE----EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh--hHHH---HHHHhCCCEEEcCC
Confidence 888865 56676543 1245677888888888865 2 22357763 2222 25566676544332
Q ss_pred ccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 225 NYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 225 ~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
+-.++...+..+++..++.++-++.
T Consensus 141 --~~~~~~~~e~~~~~~l~~~~~Dliv 165 (280)
T TIGR00655 141 --TKDNRVEHEKRQLELLKQYQVDLVV 165 (280)
T ss_pred --CCcchhhhHHHHHHHHHHhCCCEEE
Confidence 2223333334588889999888775
No 278
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=23.72 E-value=4.5e+02 Score=27.67 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccE
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~ 194 (367)
.+...+.+.+.+++|++++ |.+. +--+....+.+.+.+.+|.++|.|..
T Consensus 72 ~d~~~~~fk~~l~~lgI~~-D~f~-rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 72 VDEISAGFKELWKKLDISY-DKFI-RTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred HHHHHHHHHHHHHHcCCCC-CCCe-eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 4567788899999999964 6432 22122234667888999999999873
No 279
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=23.72 E-value=4.9e+02 Score=24.83 Aligned_cols=71 Identities=7% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCcc-EEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccc
Q 017732 180 IDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 180 ~~~L~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G 258 (367)
++.+.+|+++-.|. +.|=|-++..++.++++. ...+++|+..+.+--- .++++.|+++||.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~~~GGi---t~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVAPLGGV---RAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcchhCCH---HHHHHHHHHcCCcEEEeCCcccH
Confidence 44455555443333 334444555555555432 2356666665543321 13777899999999887666554
No 280
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.72 E-value=6.4e+02 Score=23.95 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=11.3
Q ss_pred HHHHHHHHCCCCeEeC
Q 017732 79 AAFDTSLDNGITFFDT 94 (367)
Q Consensus 79 ~~l~~A~~~Gi~~~DT 94 (367)
+..+.|.+.|+.-++.
T Consensus 158 ~aA~~a~~aGfDgVei 173 (336)
T cd02932 158 AAARRAVEAGFDVIEI 173 (336)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3345667789998875
No 281
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=23.71 E-value=7.5e+02 Score=24.75 Aligned_cols=110 Identities=11% Similarity=0.003 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCceeEEEEecCCC--CChHHHHHHHHHHHHcCCccEEeecCCC---HHHHHHHHHHHHhc
Q 017732 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKR 215 (367)
Q Consensus 141 ~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~G~ir~iGvS~~~---~~~l~~~~~~~~~~ 215 (367)
..+++.+.+.+++....+. .++.+-+-.|.+ ...+.+++.|..++++..=..+.+++.. ++.++++.+.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~---- 132 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL---- 132 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC----
Confidence 3678888888887766552 345566666544 2246688889989887211246666543 4556655442
Q ss_pred CCCeeEeccccccccCCcch--------------------------hcHHHHHHHhCCeEEeccccccc
Q 017732 216 GIPLASNQVNYSLIYRKPEE--------------------------NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~--------------------------~~~~~~~~~~gi~via~~pl~~G 258 (367)
.++.+.+.++-.++.... ..-++.+.+.|+.+....++-.|
T Consensus 133 --gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 133 --GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred --CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 245555555544432110 01245567788888777777665
No 282
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.48 E-value=7.1e+02 Score=24.75 Aligned_cols=131 Identities=19% Similarity=0.248 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEeccccccccc
Q 017732 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (367)
Q Consensus 181 ~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l 260 (367)
..+-..+++. -|+|-++.+...+.++....+..++...++-.+ -.++.+||......||-..-+
T Consensus 160 ~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~p--------------l~AE~rNislYVHpplfmndf 223 (429)
T PF10100_consen 160 RVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNP--------------LEAESRNISLYVHPPLFMNDF 223 (429)
T ss_pred eehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCCh--------------HhhhhcccceecCChHhhChh
Confidence 3444444443 489988888788888888877777655442111 126778888888888876543
Q ss_pred cC----------CCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCeEEecCCCCHHHH
Q 017732 261 TG----------KYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQVGLNWLLAQDNVVPIPGAKNAEQA 330 (367)
Q Consensus 261 ~~----------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~vi~g~~~~~~l 330 (367)
+- +|-..--|++| ..+.....+..+..++.++-.+.++.+-- .|+|...-. --|-+-+=+.+++
T Consensus 224 sL~aIF~~~~~~kYvYKL~PEGP----IT~~~I~~M~~lw~Ei~~i~~~l~~~~~N-LLkFm~ddN-YPV~~eslsr~~I 297 (429)
T PF10100_consen 224 SLNAIFEEDGVPKYVYKLFPEGP----ITPTLIRDMVQLWKEIMEILNKLGIEPFN-LLKFMNDDN-YPVRPESLSRDDI 297 (429)
T ss_pred hHHHHhCCCCCcceEEecCCCCC----CCHHHHHHHHHHHHHHHHHHHHcCCCcch-HHHHhccCC-CCCChhhCCHHHH
Confidence 31 11111134443 35666677888888999999999887766 688888633 2344555566666
Q ss_pred HHH
Q 017732 331 AEF 333 (367)
Q Consensus 331 ~en 333 (367)
+..
T Consensus 298 e~F 300 (429)
T PF10100_consen 298 ESF 300 (429)
T ss_pred hhh
Confidence 554
No 283
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.40 E-value=4.2e+02 Score=21.76 Aligned_cols=109 Identities=14% Similarity=0.200 Sum_probs=62.8
Q ss_pred HHHHHHHHHHH-HCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHH
Q 017732 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (367)
Q Consensus 75 ~~~~~~l~~A~-~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~ 153 (367)
+-...++..++ ++|+..+|+...=.. |+++-.+.+... +=+-+|+-.+ .+.. ..+.+-+
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~---------e~~v~aa~~~~a-----diVglS~l~~-----~~~~-~~~~~~~ 74 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQ---------EEFIKAAIETKA-----DAILVSSLYG-----HGEI-DCKGLRQ 74 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEecccc-----cCHH-HHHHHHH
Confidence 45567777777 579999998765544 899888876643 4444555553 2233 3444666
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHH
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l 205 (367)
-|++-+.+.+ .+++--.-..+.++.-+.-++|++.|--+-+|=+. +++++
T Consensus 75 ~l~~~gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt-~~~~i 124 (134)
T TIGR01501 75 KCDEAGLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT-PPEVV 124 (134)
T ss_pred HHHHCCCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC-CHHHH
Confidence 6777777543 23343321223344434445678888555555444 33443
No 284
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.22 E-value=62 Score=26.55 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred cHHHHHHHhCCeEEeccccc
Q 017732 237 GVKAACDELGITLIAYCPIA 256 (367)
Q Consensus 237 ~~~~~~~~~gi~via~~pl~ 256 (367)
++++.|++.||.|++|-.+.
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 69999999999999998877
No 285
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=23.19 E-value=85 Score=32.82 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=34.1
Q ss_pred HHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccE
Q 017732 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (367)
Q Consensus 154 SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~ 194 (367)
.|+.||++ |++-+|+.|+.+.+.+..+|+.|...|-+..
T Consensus 414 ~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald~ 452 (674)
T KOG0922|consen 414 QLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALDD 452 (674)
T ss_pred HHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCcccC
Confidence 38899998 9999999998888999999999998887763
No 286
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.15 E-value=6e+02 Score=23.47 Aligned_cols=127 Identities=14% Similarity=0.081 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHH
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~-~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~ 150 (367)
.+.++..++++.-.+.||+.|+...+-.. ..+... ..|. +-+.+.. +.+..+++=+ ...+ .
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~-~~~p~~~d~~~-~~~~l~~------~~~~~~~~~~------~~~~----d 78 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTSFVSP-KWVPQMADAEE-VLAGLPR------RPGVRYSALV------PNLR----G 78 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCc-ccccccCCHHH-HHhhccc------CCCCEEEEEC------CCHH----H
Confidence 34578888888888999999998743111 100000 1233 3233322 1222222212 1233 3
Q ss_pred HHHHHHhcCCCceeEEEEecCCC------CC----hHHHHHHHHHHHHcCCccEEeec---------CCCHHHHHHHHHH
Q 017732 151 LKDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGVS---------NYSEKRLRNAYEK 211 (367)
Q Consensus 151 l~~SL~~L~~dyiDl~~lH~p~~------~~----~~~~~~~L~~l~~~G~ir~iGvS---------~~~~~~l~~~~~~ 211 (367)
++++++ .+.+.+.++.--++.. .. .+...+..+..++.|+.-.+.++ .++++.+.++.+.
T Consensus 79 v~~A~~-~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 79 AERALA-AGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred HHHHHH-cCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 444443 4677777765433210 11 23455667777888876544433 2355666666665
Q ss_pred HHhcCC
Q 017732 212 LKKRGI 217 (367)
Q Consensus 212 ~~~~~~ 217 (367)
+...|.
T Consensus 158 ~~~~Ga 163 (274)
T cd07938 158 LLDLGC 163 (274)
T ss_pred HHHcCC
Confidence 555443
No 287
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=23.10 E-value=3.6e+02 Score=21.98 Aligned_cols=61 Identities=10% Similarity=0.185 Sum_probs=41.0
Q ss_pred CCcEEEEec-cCCCCCCCCHHHHHHHHHHHHHhcCC--CceeEEEEecCCC--CChHHHHHHHHHHHHc
Q 017732 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 126 R~~~~I~tK-~g~~~~~~~~~~i~~~l~~SL~~L~~--dyiDl~~lH~p~~--~~~~~~~~~L~~l~~~ 189 (367)
|=-+.|+-| +| ....+..|++.+.++.+.... .-.|++++-.+.. .+..++.+.|..|.+.
T Consensus 47 RiG~~VsKK~~g---~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVK---LAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCc---cHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 455677777 55 246678888888888775442 4589999988764 4466666666666443
No 288
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=23.04 E-value=1.1e+03 Score=26.27 Aligned_cols=103 Identities=21% Similarity=0.197 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHH-H
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDG-L 183 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~-L 183 (367)
|+-|-+++++...+++.+-|+|.|-+.. ..-.+.+..-+++.-++++ +.++.++.|+... .....++ +
T Consensus 97 ~~kL~~aI~~~~~~~~P~~I~V~tTC~~---elIGDDi~~v~~~~~~~~~---~pvi~v~tpGF~gs~~~G~~~a~~al~ 170 (917)
T PRK14477 97 EKKLYRAILELAERYQPKAVFVYATCVT---ALTGDDVEAVCKAAAEKVG---IPVIPVNTPGFIGDKNIGNRLAGEALL 170 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchH---HHhccCHHHHHHHHHHhhC---CcEEEEECCCccCchhhHHHHHHHHHH
Confidence 7788888876554443466778777632 1222233333333333333 5788999987632 1122222 2
Q ss_pred HHHHH--------cCCccEEeecCCCHHHHHHHHHHHHhcCCCe
Q 017732 184 GDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (367)
Q Consensus 184 ~~l~~--------~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~ 219 (367)
+.+.. .+.|--||-.++. ..+.++...++..|+++
T Consensus 171 ~~l~~~~~p~~~~~~~VNliG~~~~~-gd~~elk~lL~~~Gi~v 213 (917)
T PRK14477 171 KHVIGTAEPEVTTPYDINLIGEYNIA-GDLWGMLPLFDRLGIRV 213 (917)
T ss_pred HHHHhhcCCCCCCCCcEEEECCCCCc-chHHHHHHHHHHcCCeE
Confidence 33321 3678888866653 34455555566666654
No 289
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=23.03 E-value=5.4e+02 Score=26.60 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCceeEEEEecC----CCCChHHHHHHHHHHHHcCCccEEe
Q 017732 145 QSVLAALKDSLFRLGLSSVELYQLHWA----GIWGNEGFIDGLGDAVEQGLVKAVG 196 (367)
Q Consensus 145 ~~i~~~l~~SL~~L~~dyiDl~~lH~p----~~~~~~~~~~~L~~l~~~G~ir~iG 196 (367)
+...+-|+..++..+-.+.+ -|-. .....-+..+-|.+|++.|+||.+.
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~ 412 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVV 412 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEE
Confidence 56777888888888877777 2211 1112445666788899999999774
No 290
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=23.02 E-value=5.3e+02 Score=22.82 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCC-eEEecCCCCHHHHH
Q 017732 305 TQVGLNWLLAQDN-VVPIPGAKNAEQAA 331 (367)
Q Consensus 305 ~q~al~~~l~~~~-v~vi~g~~~~~~l~ 331 (367)
+.-+++.+.+.+- +..++|..+.+...
T Consensus 196 A~g~~~al~~~g~~~p~v~g~d~~~~~~ 223 (272)
T cd06300 196 AVGAVQAFEQAGRDIPPVTGEDENGFLR 223 (272)
T ss_pred cHHHHHHHHHcCCCCcEEEeeCCcHHHH
Confidence 6667777776652 24567777665443
No 291
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=22.90 E-value=4.1e+02 Score=26.65 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred HHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhc--CCC-eeEeccccccccCCcchhcHHHHHHHhCCeEEecc
Q 017732 182 GLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR--GIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (367)
Q Consensus 182 ~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~--~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~ 253 (367)
-...+-+.|-...+|....+++++++.+..++.. +.+ |-+|-+ .+.-++.. +..+++.|.+++|.++..+
T Consensus 35 LVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~-e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 35 LVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPAL-EWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCccc-HHHHHHHHHHcCCCEEEec
Confidence 3444558899999999999999999988887652 224 666654 22222222 2358899999999988654
No 292
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.89 E-value=3e+02 Score=24.39 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHcCCccEEeecCC-CHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 174 WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 174 ~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
....+..+.+++++++..=-.||..+. +.++++++.+. |..|.+ ......+++++|+++||.++.
T Consensus 37 ~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv---------SP~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 37 LRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV---------SPGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred CCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE---------CCCCCHHHHHHHHHcCCCEeC
No 293
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.86 E-value=5.1e+02 Score=25.68 Aligned_cols=80 Identities=10% Similarity=0.131 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCccEEeecCC-CHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEecccc
Q 017732 177 EGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (367)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl 255 (367)
.++...|.+... ++-+..++ +...++.+....+. .++..++..+-||+..-..=..+.+.|+++|+.++.=.++
T Consensus 127 ~gT~~~l~~~~~----~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf 201 (409)
T KOG0053|consen 127 GGTLRILRKFLP----KFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTF 201 (409)
T ss_pred ccHHHHHHHHHH----HhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCc
Confidence 445555555444 22222232 55566666555443 3567888888899876544345888999999999998888
Q ss_pred cccccc
Q 017732 256 AQGALT 261 (367)
Q Consensus 256 ~~G~l~ 261 (367)
+.+++.
T Consensus 202 ~~p~~~ 207 (409)
T KOG0053|consen 202 GSPYNQ 207 (409)
T ss_pred Cccccc
Confidence 887554
No 294
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=22.78 E-value=4e+02 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.043 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc
Q 017732 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (367)
Q Consensus 145 ~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (367)
+...+.+.+.+++||+++ |.+.-. -++...+.+.+.+.+|.++|.|-
T Consensus 71 ~~~~~~~~~~~~~l~i~~-d~f~rt-t~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 71 ARYHAEHKRDFAGFGISF-DNYGST-HSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HHHHHHHHHHHHHhCCCC-CCCccC-CcHHHHHHHHHHHHHHHHCCCEE
Confidence 456777889999999974 643211 11123678889999999999875
No 295
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=22.73 E-value=4.4e+02 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=26.6
Q ss_pred CeeEeccccccccCCcchhcHHHHHHHhCCeEEec
Q 017732 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~ 252 (367)
.+.+.=-+||++|+..- .++.+..++.|+.|+..
T Consensus 185 ~Ivl~GrpY~~~D~~in-~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 185 AIVLLGRPYNIYDPFIN-MGIPDKLRSLGVPVITE 218 (221)
T ss_pred eEEEEcCCCcCCCcccC-CchHHHHHHCCCeeeCc
Confidence 35666668999888654 46999999999999864
No 296
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.62 E-value=76 Score=27.20 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHcC-CccEEeecCCC--HHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 175 GNEGFIDGLGDAVEQG-LVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 175 ~~~~~~~~L~~l~~~G-~ir~iGvS~~~--~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
...+++++|.++++.| +|-.+|..+.. ...+.+++ ...+.+..|+-.+ +-...+..+++.|+.++.
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--------~~~i~~~~~~~~~---e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--------GVDIKIYPYDSEE---EIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--------T-EEEEEEESSHH---HHHHHHHHHHHTT--EEE
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--------CCceEEEEECCHH---HHHHHHHHHHHcCCcEEE
Confidence 4568888888888666 55566666653 33343332 2344444443211 112477788888998876
No 297
>PRK14847 hypothetical protein; Provisional
Probab=22.52 E-value=6.7e+02 Score=24.13 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCC----ccEEeecCCCHHHHHHHHHHHHhcCC
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~----ir~iGvS~~~~~~l~~~~~~~~~~~~ 217 (367)
++.+ =+-.|-+.|.++|+|.|.+ -+|.. .++-.++..++.+.++ ++-.+++....+.++...+.....+.
T Consensus 51 fs~e-eKl~IA~~L~~lGVd~IEv---G~Pa~--s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~ 124 (333)
T PRK14847 51 MDGA-RKLRLFEQLVAVGLKEIEV---AFPSA--SQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPR 124 (333)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEe---eCCCC--CHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCC
Confidence 4444 2345777799999877766 44532 2333667777777764 67778888888888888776432222
Q ss_pred CeeEeccccccccC------Ccch-----hcHHHHHHHhCC---e---EEeccccc
Q 017732 218 PLASNQVNYSLIYR------KPEE-----NGVKAACDELGI---T---LIAYCPIA 256 (367)
Q Consensus 218 ~~~~~q~~~n~~~~------~~~~-----~~~~~~~~~~gi---~---via~~pl~ 256 (367)
....+-++.|.++. ..++ .+.+.++++++. + .+.+++--
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED 180 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET 180 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec
Confidence 23333333333222 1111 146678888854 2 35565543
No 298
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.49 E-value=6e+02 Score=23.24 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceeEEEEecCCC---CChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhc--CCCeeEe
Q 017732 148 LAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR--GIPLASN 222 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~lH~p~~---~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~--~~~~~~~ 222 (367)
.+...+.++.|--.-+|++-|--|-. .+-.-+.++-.+..++| .+.+.+.+.+...++. .+|+. .
T Consensus 23 ~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G---------~~~~~~~~~v~~ir~~~~~~plv-~ 92 (256)
T TIGR00262 23 LETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAG---------MTPEKCFELLKKVRQKHPNIPIG-L 92 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHhcCCCCCEE-E
Q ss_pred ccccccccCCcchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC
Q 017732 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK 302 (367)
Q Consensus 223 q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 302 (367)
++-||++.+...++ +++.|++.|+.-+..--+.- +....+.+.++++|+
T Consensus 93 m~Y~Npi~~~G~e~-f~~~~~~aGvdgviipDlp~------------------------------ee~~~~~~~~~~~gl 141 (256)
T TIGR00262 93 LTYYNLIFRKGVEE-FYAKCKEVGVDGVLVADLPL------------------------------EESGDLVEAAKKHGV 141 (256)
T ss_pred EEeccHHhhhhHHH-HHHHHHHcCCCEEEECCCCh------------------------------HHHHHHHHHHHHCCC
Q ss_pred CH
Q 017732 303 TS 304 (367)
Q Consensus 303 s~ 304 (367)
.+
T Consensus 142 ~~ 143 (256)
T TIGR00262 142 KP 143 (256)
T ss_pred cE
No 299
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.44 E-value=6.1e+02 Score=23.29 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeE
Q 017732 72 RKMKAAKAAFDTSLDNGITFF 92 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~ 92 (367)
.+.++..+.++.+.+.|++.|
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~ 82 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRF 82 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEE
Confidence 345667777777778998754
No 300
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.34 E-value=4e+02 Score=26.33 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=27.7
Q ss_pred CCeeEeccccccccCCcchhcHHHHHHHhCCeEEecccccccccc
Q 017732 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALT 261 (367)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~l~ 261 (367)
.+..++..+-|+..+-..-..+.+.++++|+-++.=.+++.+++.
T Consensus 150 tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q 194 (396)
T COG0626 150 TKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ 194 (396)
T ss_pred ceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc
Confidence 456666667776655333234666777777666666666666554
No 301
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=22.28 E-value=5.6e+02 Score=22.77 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHC-----CCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHH
Q 017732 72 RKMKAAKAAFDTSLDN-----GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~-----Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~ 146 (367)
.++++..+.++.+++. |+|--=.+..-.+ +..+...++.... |.-+||=++..+ .+
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~---------~~~m~~vl~~l~~---~gl~FvDS~T~~----~s--- 131 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD---------REAMRWVLEVLKE---RGLFFVDSRTTP----RS--- 131 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----------HHHHHHHHHHHHH---TT-EEEE-S--T----T----
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC---------HHHHHHHHHHHHH---cCCEEEeCCCCc----cc---
Confidence 5678999999999986 4443322222223 7777777766542 556666455422 11
Q ss_pred HHHHHHHHHHhcCCCc--eeEEEEecCCCCChHH-HHHHHHHHHHcCCccEEeecCC-CHHHHHHHHHHHHhcCC
Q 017732 147 VLAALKDSLFRLGLSS--VELYQLHWAGIWGNEG-FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 147 i~~~l~~SL~~L~~dy--iDl~~lH~p~~~~~~~-~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 217 (367)
...+.-+++|+-+ -|+|+=|..+...... +-+.....+++|.+-.||=..- +.+.+.++....+..|+
T Consensus 132 ---~a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 132 ---VAPQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGI 203 (213)
T ss_dssp ---SHHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTE
T ss_pred ---HHHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCE
Confidence 1223344566543 4554433322212222 2233344467887666664332 44555566555555554
No 302
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.22 E-value=6e+02 Score=23.10 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=12.5
Q ss_pred cHHHHHHHhCCeEEec
Q 017732 237 GVKAACDELGITLIAY 252 (367)
Q Consensus 237 ~~~~~~~~~gi~via~ 252 (367)
..++.|++.|+..+..
T Consensus 89 ~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 89 DEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4788888889887764
No 303
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=22.19 E-value=6e+02 Score=23.11 Aligned_cols=74 Identities=24% Similarity=0.236 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeE
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~ 221 (367)
...+.+.+++.++++| |.++++. .+...+.....+.++.+..+| +..|-++....+.+...++.+...++|+.+
T Consensus 13 ~~~~~~gi~~~a~~~g--~~~~i~~-~~~~~d~~~q~~~i~~l~~~~-vdgiIi~~~~~~~~~~~l~~~~~~giPvV~ 86 (302)
T TIGR02637 13 FEAANKGAEEAAKELG--SVYIIYT-GPTGTTAEGQIEVVNSLIAQK-VDAIAISANDPDALVPALKKAMKRGIKVVT 86 (302)
T ss_pred HHHHHHHHHHHHHHhC--CeeEEEE-CCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCEEEE
Confidence 4567888888898887 4444433 222234556667788777765 677777766666655555556666666443
No 304
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=22.18 E-value=5.9e+02 Score=23.02 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHCCCCeEeCCCCcC------CCCCCCCCchHHHHHHHHHhc---cCCCCCCc--EEEEeccCCCCCCCC
Q 017732 75 KAAKAAFDTSLDNGITFFDTAEVYG------SRASFGAINSETLLGRFIKER---KQRDPEVE--VTVATKFAALPWRLG 143 (367)
Q Consensus 75 ~~~~~~l~~A~~~Gi~~~DTA~~Yg------~g~s~~~~~sE~~lG~al~~~---~~~~~R~~--~~I~tK~g~~~~~~~ 143 (367)
+...+.++.|.+.|+..+=-+++.. .....+ .-+..-+-+.++.. ..++ +++ |.+---++. -
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~-~~~~~~~~~Y~~~i~~l~~~y-~~~i~I~~GiE~~~-----~ 87 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALD-KMAFSSLPEYFKEINRLKKEY-ADKLKILIGLEVDY-----I 87 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCcccccc-chhHHHHHHHHHHHHHHHHHh-hCCCeEEEEEEecc-----c
Confidence 3456889999999999875444321 100000 00012222222221 1111 223 333333322 1
Q ss_pred HHHHHHHHHHHHHhcCCCceeEEEEecCCC----C--------------ChHH----HHHHHHHHHHcC----CccEEee
Q 017732 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI----W--------------GNEG----FIDGLGDAVEQG----LVKAVGV 197 (367)
Q Consensus 144 ~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~----~--------------~~~~----~~~~L~~l~~~G----~ir~iGv 197 (367)
+ .....+++.|++.+.||+ +.-+|+... . +.++ ..+.+.++.+.. .+.++.+
T Consensus 88 ~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~i~~~~~~dvlgH~Dl 165 (253)
T TIGR01856 88 P-GFEDFTKDFLDEYGLDFV-IGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRDYFESVYDSIQALFKPLVIGHIDL 165 (253)
T ss_pred c-chHHHHHHHHHHCCCCeE-EEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCcccHhH
Confidence 2 233457777888888888 788897541 1 1122 233445555542 1222221
Q ss_pred c----C--------CC--HHHHHHHHHHHHhcCCCeeEecccc--ccccCCcchhcHHHHHHHhCCeEE
Q 017732 198 S----N--------YS--EKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 198 S----~--------~~--~~~l~~~~~~~~~~~~~~~~~q~~~--n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
- . +. .+.++++++.+...+..+.+|--.+ ...+.-+. ..+++.|++.|+.++
T Consensus 166 i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~-~~il~~~~~~g~~it 233 (253)
T TIGR01856 166 VQKFGPLFTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGLRKPLEEAYPS-KELLNLAKELGIPLV 233 (253)
T ss_pred HHHhCccccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCCCCCCC-HHHHHHHHHcCCCEE
Confidence 0 0 00 1236777777777776666664322 12122221 249999999998865
No 305
>PRK00077 eno enolase; Provisional
Probab=22.12 E-value=7.1e+02 Score=24.70 Aligned_cols=96 Identities=17% Similarity=0.065 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC--CccEEeec--CCCHHHHHHHHHHHHhcCCC
Q 017732 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVS--NYSEKRLRNAYEKLKKRGIP 218 (367)
Q Consensus 143 ~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~~~ 218 (367)
+++.....+.+.++. .+++++-.|-..+ -|+.+.+|.++- +|.-.|=- ..+++.+.++++. .-
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~---D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLDEN---DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCCCc---cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 555555555555444 4577777774322 356666666653 45544322 2368888888664 34
Q ss_pred eeEeccccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
.+++|+..|-.--=.+-..+...|+.+|+.++.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 677777766543222233588999999998664
No 306
>PF13289 SIR2_2: SIR2-like domain
Probab=22.01 E-value=3.3e+02 Score=21.58 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCC--eeEeccccccccCCcchhcHHHHHHHhCCeEE
Q 017732 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (367)
Q Consensus 177 ~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~--~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~vi 250 (367)
..+++.+..+.....+-.||.|-.++ .+..++..+...... ..... +.+.........+.++.||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSRPRHYI-----VIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCCccEEE-----EEcCCchHHHHHHHHHcCCEEC
Confidence 45778888888889999999996654 555555443332211 11111 1111111236778888898875
No 307
>PRK05926 hypothetical protein; Provisional
Probab=21.94 E-value=7.4e+02 Score=24.09 Aligned_cols=130 Identities=10% Similarity=0.009 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC--------hHHHH
Q 017732 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--------NEGFI 180 (367)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~--------~~~~~ 180 (367)
.|+++..+.+. ... =.++.|++ |..| ..+.+.+.+.++...+.+ .+ +.+|+..... ....-
T Consensus 101 ~eeI~~~a~~a-~~G--~~ei~iv~--G~~p-~~~~e~~~e~i~~Ik~~~----p~-i~i~a~s~~Ei~~~~~~~~~~~~ 169 (370)
T PRK05926 101 PDQLVQSIKEN-PSP--ITETHIVA--GCFP-SCNLAYYEELFSKIKQNF----PD-LHIKALTAIEYAYLSKLDNLPVK 169 (370)
T ss_pred HHHHHHHHHHH-hcC--CCEEEEEe--CcCC-CCCHHHHHHHHHHHHHhC----CC-eeEEECCHHHHHHHHhhcCCCHH
Confidence 46666655443 211 25788886 5433 355666655544444332 12 3345432100 01234
Q ss_pred HHHHHHHHcCCccEEee---------------cCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHh
Q 017732 181 DGLGDAVEQGLVKAVGV---------------SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL 245 (367)
Q Consensus 181 ~~L~~l~~~G~ir~iGv---------------S~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~ 245 (367)
+.|++|++.|.-++.|- ...+.++..+.++.++..|++..+- +-|.+.+...+.-+.+...++.
T Consensus 170 e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sg-mi~G~gEt~edrv~~l~~Lr~L 248 (370)
T PRK05926 170 EVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNAT-MLCYHRETPEDIVTHMSKLRAL 248 (370)
T ss_pred HHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCc-eEEeCCCCHHHHHHHHHHHHhc
Confidence 56888899999887763 1224455556667777778765554 5555555433323455555555
Q ss_pred CCeEE
Q 017732 246 GITLI 250 (367)
Q Consensus 246 gi~vi 250 (367)
+....
T Consensus 249 q~~t~ 253 (370)
T PRK05926 249 QDKTS 253 (370)
T ss_pred CCccC
Confidence 54433
No 308
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=21.86 E-value=1.8e+02 Score=22.57 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHH
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 211 (367)
...+..+..+++-++|+=.+-..|..+..-.++.++..|++|+ ++=++.. ++++..+.+.
T Consensus 30 ~~r~~~~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~--~~~L~~~-p~~L~tLa~L 89 (99)
T COG3113 30 SQREAQLKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN--AVTLTGV-PEQLRTLAEL 89 (99)
T ss_pred HHHHHHccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCC--eeEEecC-cHHHHHHHHH
Confidence 4455666677888999988888877777788999999999998 5555543 4677766554
No 309
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.84 E-value=6.5e+02 Score=23.37 Aligned_cols=224 Identities=16% Similarity=0.188 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 73 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
+.+.+.++++...+.|...|+-.--|.+..+.|+ .+=...++... .+.+.+.+.+-++
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP----~Iq~A~~rAL~------------------~g~t~~~~lel~~ 86 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGP----TIQAAHLRALA------------------AGVTLEDTLELVE 86 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCH----HHHHHHHHHHH------------------CCCCHHHHHHHHH
Confidence 4588999999999999999998777776655332 22111111111 2345555655555
Q ss_pred HHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCC
Q 017732 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (367)
Q Consensus 153 ~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (367)
+..+. +.+.. +.++-...+.-...+-+.++++++.|- ..+=+-...++.-..+...+++.++.+...- -+.
T Consensus 87 ~~r~~-~~~~P-ivlm~Y~Npi~~~Gie~F~~~~~~~Gv-dGlivpDLP~ee~~~~~~~~~~~gi~~I~lv------aPt 157 (265)
T COG0159 87 EIRAK-GVKVP-IVLMTYYNPIFNYGIEKFLRRAKEAGV-DGLLVPDLPPEESDELLKAAEKHGIDPIFLV------APT 157 (265)
T ss_pred HHHhc-CCCCC-EEEEEeccHHHHhhHHHHHHHHHHcCC-CEEEeCCCChHHHHHHHHHHHHcCCcEEEEe------CCC
Confidence 54432 23322 333333222223344556777888774 3444666788888888888888877655422 222
Q ss_pred cchhcHHHHHHHhCCeEEeccccccccccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHH-----HcCC-CHHH
Q 017732 233 PEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGE-----NYSK-TSTQ 306 (367)
Q Consensus 233 ~~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~-----~~~~-s~~q 306 (367)
.. .+.++...+..=+++=|-...+ . ||. +.. ... ...+.++.++++++ .+|+ ++.|
T Consensus 158 t~-~~rl~~i~~~a~GFiY~vs~~G-v-TG~----------~~~-~~~----~~~~~v~~vr~~~~~Pv~vGFGIs~~e~ 219 (265)
T COG0159 158 TP-DERLKKIAEAASGFIYYVSRMG-V-TGA----------RNP-VSA----DVKELVKRVRKYTDVPVLVGFGISSPEQ 219 (265)
T ss_pred CC-HHHHHHHHHhCCCcEEEEeccc-c-cCC----------Ccc-cch----hHHHHHHHHHHhcCCCeEEecCcCCHHH
Confidence 21 1356666666655554333321 0 111 000 001 13344556665543 2454 3444
Q ss_pred HHHHHHhcCCCeEEecCCCCHHHHHHHHhhhCCCCCHHHHHHHHHhHhc
Q 017732 307 VGLNWLLAQDNVVPIPGAKNAEQAAEFAGALGWRLTDEEVNELRSMASE 355 (367)
Q Consensus 307 ~al~~~l~~~~v~vi~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~ 355 (367)
++--..... -||+|+.=++.+.++.. ++-++.+.++.+.
T Consensus 220 ~~~v~~~AD---GVIVGSAiV~~i~~~~~-------~~~~~~~~~l~~~ 258 (265)
T COG0159 220 AAQVAEAAD---GVIVGSAIVKIIEEGLD-------EEALEELRALVKE 258 (265)
T ss_pred HHHHHHhCC---eEEEcHHHHHHHHhccc-------hhhHHHHHHHHHH
Confidence 433333322 47888887777777755 3344445444443
No 310
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=21.70 E-value=7.3e+02 Score=24.64 Aligned_cols=81 Identities=15% Similarity=0.012 Sum_probs=49.2
Q ss_pred eeEEEEecCCCCChHHHHHHHHHHHHcC--CccEEeecC--CCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcH
Q 017732 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (367)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~ 238 (367)
.+++++-.|-.. +-|+.+.+|.+.- .|.-.|=-. .+++.+.++++. .-.+++|+..|-.--=.+-..+
T Consensus 278 ~~i~~iEdPl~~---~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGItea~~i 349 (425)
T TIGR01060 278 YPIVSIEDGLSE---EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTETLDA 349 (425)
T ss_pred CCcEEEEcCCCc---ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHH
Confidence 467777776432 2366666666554 554433222 257888887664 2467777776654322222358
Q ss_pred HHHHHHhCCeEEe
Q 017732 239 KAACDELGITLIA 251 (367)
Q Consensus 239 ~~~~~~~gi~via 251 (367)
.+.|+++|+.++.
T Consensus 350 a~lA~~~Gi~~vv 362 (425)
T TIGR01060 350 VELAKKAGYTAVI 362 (425)
T ss_pred HHHHHHcCCcEEE
Confidence 8999999998654
No 311
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.54 E-value=2.9e+02 Score=21.23 Aligned_cols=57 Identities=18% Similarity=0.101 Sum_probs=31.3
Q ss_pred HHhcCCCceeEEEEecCCCCChHHHHHHHHHHH---HcCCccEEeecCCCHHHHHHHHHH
Q 017732 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAV---EQGLVKAVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 155 L~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~---~~G~ir~iGvS~~~~~~l~~~~~~ 211 (367)
|..|.-.++=|++++......-...+..|.++. ++..++.+|||..+.+.+.++.+.
T Consensus 20 l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 20 LSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred HHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 445543454444443322211223333444443 345689999999998877777554
No 312
>PLN02610 probable methionyl-tRNA synthetase
Probab=21.51 E-value=3.3e+02 Score=29.61 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCcc
Q 017732 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (367)
Q Consensus 146 ~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir 193 (367)
...+.+++.+++|++++ |.|.-. .++...+-+.+.+.+|.++|.|-
T Consensus 88 ~~~~~~~~~~~~l~i~~-D~f~rT-~~~~h~~~vq~~f~~L~~~G~Iy 133 (801)
T PLN02610 88 KYHAIHKEVYDWFDISF-DKFGRT-STPQQTEICQAIFKKLMENNWLS 133 (801)
T ss_pred HHHHHHHHHHHHcCCcc-ccCccC-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 34567888899999886 643221 12223567888999999999875
No 313
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.47 E-value=7.3e+02 Score=23.79 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G 190 (367)
.+.+.|.+.+++. ...|...+.+..-+.|+ .+.+.+.+.++.++++.
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN-LPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC-CCHHHHHHHHHHHHHHC
Confidence 5788888877754 56888888887656664 45677888888888875
No 314
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.43 E-value=4.2e+02 Score=26.40 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCcc-----EEeecCCCHH------HHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCe
Q 017732 180 IDGLGDAVEQGLVK-----AVGVSNYSEK------RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (367)
Q Consensus 180 ~~~L~~l~~~G~ir-----~iGvS~~~~~------~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~ 248 (367)
++.|.+|.++|+|+ +++....... .-.++...++..++.-++.---+..++|-.. -+....++.||.
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a--~m~keiE~~GiP 366 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGA--TMVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHH--HHHHHHHHcCCC
Confidence 68899999999997 5555433221 1223444455566554443334555555433 267778889999
Q ss_pred EEecccc
Q 017732 249 LIAYCPI 255 (367)
Q Consensus 249 via~~pl 255 (367)
++-+..+
T Consensus 367 vv~~~~~ 373 (431)
T TIGR01918 367 VVHMCTV 373 (431)
T ss_pred EEEEeec
Confidence 9876554
No 315
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.42 E-value=3.5e+02 Score=26.39 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEecccccccc
Q 017732 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (367)
Q Consensus 180 ~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl~~G~ 259 (367)
.+++.+|.+.|.+.|| +..+-.+.=..+....+..+...-+...-..-+.+ +++.|+++||.||.-+-=..+
T Consensus 12 ~~a~~~l~~~g~~d~l-~~d~LaE~tma~~~~~~~~~p~~gY~~~~~~~L~~------~L~~~~~~gIkvI~NaGg~np- 83 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYL-VGDYLAERTMAILARAKRKDPTKGYAPDFVRDLRP------LLPAAAEKGIKVITNAGGLNP- 83 (362)
T ss_pred HHHHHHHHhcCCCCEE-EEecHHHHHHHHHHHHHhhCCCCCchHHHHHHHHH------HHHHHHhCCCCEEEeCCCCCH-
Q ss_pred ccCCCCCCCCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCCC
Q 017732 260 LTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (367)
Q Consensus 260 l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s 303 (367)
....+++++++++.|.+
T Consensus 84 ---------------------------~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 84 ---------------------------AGCADIVREIARELGLS 100 (362)
T ss_pred ---------------------------HHHHHHHHHHHHhcCCC
No 316
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=21.37 E-value=4.3e+02 Score=27.93 Aligned_cols=110 Identities=12% Similarity=0.258 Sum_probs=65.1
Q ss_pred CCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCc--chhcHHHHHHHhCCeEEeccccccccccCCCCCC
Q 017732 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQ 267 (367)
Q Consensus 190 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~--~~~~~~~~~~~~gi~via~~pl~~G~l~~~~~~~ 267 (367)
.++-.+-=++.+.+.+.++.+.++.....+ .+ +|=++... .+..+.+.+++-++-++. | |.=+
T Consensus 154 ~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~---~~-~~tiC~at~~Rq~a~~~la~~~d~~~vv----G-g~~S------ 218 (647)
T PRK00087 154 KKICVVSQTTEKQENFEKVLKELKKKGKEV---KV-FNTICNATEVRQEAAEKLAKKVDVMIVV----G-GKNS------ 218 (647)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCc---cc-CCCcchhhhhHHHHHHHHHhhCCEEEEE----C-CCCC------
Confidence 444444445567777777777665432222 12 23333211 122477777777766664 2 2100
Q ss_pred CCCCCCCCCCCchHHHhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Q 017732 268 NPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFA 334 (367)
Q Consensus 268 ~~p~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl 334 (367)
.+ -.+|.++|.+.+. ++.++.-.|+-....|.+..|+|+|+.+-+.+
T Consensus 219 -------------sN-------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v 271 (647)
T PRK00087 219 -------------SN-------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEEV 271 (647)
T ss_pred -------------cc-------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHH
Confidence 00 1267788887763 78888889988776568999999999764443
No 317
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=21.33 E-value=4.9e+02 Score=21.80 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=7.7
Q ss_pred CChHHHHHHHHHHHHc
Q 017732 174 WGNEGFIDGLGDAVEQ 189 (367)
Q Consensus 174 ~~~~~~~~~L~~l~~~ 189 (367)
...+++.+.|.++.++
T Consensus 180 ~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 180 QGIDELRAAIAKWLAE 195 (196)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3445555555554443
No 318
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.29 E-value=1.6e+02 Score=24.14 Aligned_cols=40 Identities=0% Similarity=-0.149 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCceeEEEEecCCCC--ChHHHHHHHHHHHHc
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQ 189 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~~--~~~~~~~~L~~l~~~ 189 (367)
.+++.|+.+....+|+++++..+.. ...++...++.|.+.
T Consensus 56 ~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 56 GFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred HHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 4555555566666777777766552 244555556666555
No 319
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=21.01 E-value=7e+02 Score=23.42 Aligned_cols=120 Identities=20% Similarity=0.086 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHH-HHHHhccCCC--CCCcEEEEeccCCCCC---CCCHHHHHH
Q 017732 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG-RFIKERKQRD--PEVEVTVATKFAALPW---RLGRQSVLA 149 (367)
Q Consensus 76 ~~~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG-~al~~~~~~~--~R~~~~I~tK~g~~~~---~~~~~~i~~ 149 (367)
++.+.+-.++..|-+.| .+|.|.| -. +| .-..+..... +++.+....-.|.... .-..+.-..
T Consensus 50 ~av~~~~~~l~~ggrI~----~~GaGtS------g~-la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~ 118 (299)
T PRK05441 50 AAVDAAAAALRQGGRLI----YIGAGTS------GR-LGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAE 118 (299)
T ss_pred HHHHHHHHHHHCCCEEE----EEcCcHH------HH-HHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHH
Confidence 34445555667788777 6888865 32 33 1112221111 2344444333332100 001111222
Q ss_pred HHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHH
Q 017732 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (367)
Q Consensus 150 ~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~ 208 (367)
...+.|+..+...=|+++.-..+. ...+++++++.+++.| ++-|++++.....+.+.
T Consensus 119 ~~~~~l~~~~l~~~DvvI~IS~SG-~T~~vi~al~~Ak~~G-a~tI~IT~~~~s~La~~ 175 (299)
T PRK05441 119 LGAADLKAINLTAKDVVVGIAASG-RTPYVIGALEYARERG-ALTIGISCNPGSPLSKE 175 (299)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCC-CCHHHHHHHHHHHHCC-CeEEEEECCCCChhhHh
Confidence 334455566666678888776442 3567999999999999 68899998866666554
No 320
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.99 E-value=4.4e+02 Score=28.05 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHc--CCccEEeecCCCHHHHHHHHHHH
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKL 212 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~--G~ir~iGvS~~~~~~l~~~~~~~ 212 (367)
.+.+.|++-++.....-.....-+|+|+..+... ....++|.+..++ +.+++|.+++.....+..+...|
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 4466677766655443334456789988876543 3455666666666 89999999997655555555443
No 321
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.87 E-value=6.1e+02 Score=26.97 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=56.9
Q ss_pred CceeEEEEecCCCCChHHHHHHHHHHHHc---------CCccEEeec-CCCHHHHHHHHHHHHhcCCCeeEeccccc---
Q 017732 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQ---------GLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS--- 227 (367)
Q Consensus 161 dyiDl~~lH~p~~~~~~~~~~~L~~l~~~---------G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~~~~~q~~~n--- 227 (367)
..+|.|++..++ ..++++...+|--+ |..-.-+.. +++.+.+.++++..++.++|++++.+.+.
T Consensus 234 ~~ldyy~~~G~t---p~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~ 310 (665)
T PRK10658 234 EYLEYFVIDGPT---PKEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMK 310 (665)
T ss_pred CcEEEEEEeCCC---HHHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhc
Confidence 679999998864 46677666665322 321111111 34566788888888889999988766532
Q ss_pred -----cc--c--CCcchhcHHHHHHHhCCeEEec
Q 017732 228 -----LI--Y--RKPEENGVKAACDELGITLIAY 252 (367)
Q Consensus 228 -----~~--~--~~~~~~~~~~~~~~~gi~via~ 252 (367)
-+ + +-+...++++..+++|+.++.+
T Consensus 311 ~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~ 344 (665)
T PRK10658 311 EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVW 344 (665)
T ss_pred CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEe
Confidence 11 1 1112236999999999999876
No 322
>PRK12928 lipoyl synthase; Provisional
Probab=20.76 E-value=7e+02 Score=23.33 Aligned_cols=165 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEeC----CCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHH
Q 017732 72 RKMKAAKAAFDTSLDNGITFFDT----AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (367)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gi~~~DT----A~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i 147 (367)
.+.++..+.++.+.+.|++++-. -+.+.++. -..+-+.++... ...-.+..++ .+++.+
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g-------~~~~~ell~~Ik----~~~p~~~I~~------ltp~~~ 149 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGG-------AAHFVATIAAIR----ARNPGTGIEV------LTPDFW 149 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccC-------HHHHHHHHHHHH----hcCCCCEEEE------eccccc
Q ss_pred HHHHHHHHHhcCCCceeEEEE---------ecCCC-CChHHHHHHHHHHHHcC---Ccc---EEeecCCCHHHHHHHHHH
Q 017732 148 LAALKDSLFRLGLSSVELYQL---------HWAGI-WGNEGFIDGLGDAVEQG---LVK---AVGVSNYSEKRLRNAYEK 211 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~~l---------H~p~~-~~~~~~~~~L~~l~~~G---~ir---~iGvS~~~~~~l~~~~~~ 211 (367)
.+ .++.|+.|.-...|++.. ..... ...++.++.++.+++.| .++ =+|+ .-+.+++.+.++.
T Consensus 150 ~~-~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~ 227 (290)
T PRK12928 150 GG-QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRD 227 (290)
T ss_pred cC-CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHH
Q ss_pred HHhcC---------CCeeEeccccccccCCcchhcHHHHHHHhCCeEEecccc
Q 017732 212 LKKRG---------IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (367)
Q Consensus 212 ~~~~~---------~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via~~pl 255 (367)
++..+ ..|.-.+.+..=+....+-..+-..+.+.|...++.+||
T Consensus 228 Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 228 LRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred HHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 323
>PLN02389 biotin synthase
Probab=20.68 E-value=8e+02 Score=23.98 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=56.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEeCCCC-cCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHH
Q 017732 70 DDRKMKAAKAAFDTSLDNGITFFDTAEV-YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (367)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gi~~~DTA~~-Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~ 148 (367)
...+.++..+.++.+.+.|++.|--... .+.+. ....-+.+-+.++... ...+.|....|. .+.+.+
T Consensus 114 ~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~---e~~~~e~i~eiir~ik----~~~l~i~~s~G~----l~~E~l- 181 (379)
T PLN02389 114 KLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVG---RKTNFNQILEYVKEIR----GMGMEVCCTLGM----LEKEQA- 181 (379)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCC---ChhHHHHHHHHHHHHh----cCCcEEEECCCC----CCHHHH-
Confidence 3468899999999999999998743211 11110 0001234445555543 123445544442 334333
Q ss_pred HHHHHHHHhcCCCceeEEEEec-C----C---CCChHHHHHHHHHHHHcCC
Q 017732 149 AALKDSLFRLGLSSVELYQLHW-A----G---IWGNEGFIDGLGDAVEQGL 191 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~-p----~---~~~~~~~~~~L~~l~~~G~ 191 (367)
+.|+..|+|++-+-+ .. + . ....++.++.++.+++.|.
T Consensus 182 ----~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 ----AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred ----HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 335566777643321 21 1 0 1236778888888888884
No 324
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=20.56 E-value=7.8e+02 Score=24.26 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcC--CccEEe-e-cCCCHHHHHHHHHHHHhcCC
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVG-V-SNYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G--~ir~iG-v-S~~~~~~l~~~~~~~~~~~~ 217 (367)
++++...+-+.+.++. .+++++-.|-...+ |+.+.+|.++- .+.-.| = ..+++..+.++++. .
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~ 327 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----K 327 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----C
Confidence 3445444444444333 35777777754333 55566666652 444333 2 12468888887664 2
Q ss_pred CeeEeccccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
..+++|+..|-.---.+-..+...|+++|+.++.
T Consensus 328 a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 328 AANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 4677777666543222223588999999999874
No 325
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.56 E-value=4.8e+02 Score=27.29 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceeEE---EEecCCCCChHHHHHHHHHHHHcCC-ccE---------EeecCCCHHHHHHHHHHHHh
Q 017732 148 LAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQGL-VKA---------VGVSNYSEKRLRNAYEKLKK 214 (367)
Q Consensus 148 ~~~l~~SL~~L~~dyiDl~---~lH~p~~~~~~~~~~~L~~l~~~G~-ir~---------iGvS~~~~~~l~~~~~~~~~ 214 (367)
+..+-..|.++|.+.|+++ .++-.-+.-.++-|+.|+.+++... ++- +|.+++.-+.+...++.+..
T Consensus 29 ~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~ 108 (593)
T PRK14040 29 MLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVK 108 (593)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHh
Q ss_pred cCCCeeEeccccccccCCcchhcHHHHHHHhCCeEEe
Q 017732 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~~gi~via 251 (367)
.|+...-+-...|-+..-.. .++++++.|..+.+
T Consensus 109 ~Gid~~rifd~lnd~~~~~~---ai~~ak~~G~~~~~ 142 (593)
T PRK14040 109 NGMDVFRVFDAMNDPRNLET---ALKAVRKVGAHAQG 142 (593)
T ss_pred cCCCEEEEeeeCCcHHHHHH---HHHHHHHcCCeEEE
No 326
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.51 E-value=7.3e+02 Score=23.45 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=63.3
Q ss_pred HHHHHHHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCC-CCCCCCHHHHHHHHHHHHH
Q 017732 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRLGRQSVLAALKDSLF 156 (367)
Q Consensus 78 ~~~l~~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~-~~~~~~~~~i~~~l~~SL~ 156 (367)
+++...|..+|+.|+-++..+..-.. .+.|.++++. +.--||..+... ..|.++++. .++....
T Consensus 165 kd~~~Ia~a~g~~YVA~~~~~~~~~l------~~~i~~A~~~------~Gps~I~v~sPC~~~~~~~~~~---~~~~~kl 229 (299)
T PRK11865 165 KNMPLIMAAHGIPYVATASIGYPEDF------MEKVKKAKEV------EGPAYIQVLQPCPTGWGFPPEK---TIEIGRL 229 (299)
T ss_pred CCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhC------CCCEEEEEECCCCCCCCCCHHH---HHHHHHH
Confidence 45566777889999998877643221 4444555432 234455555433 335556653 3444445
Q ss_pred hcCCCceeEEEEecCCC---CChHH-----HHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHH
Q 017732 157 RLGLSSVELYQLHWAGI---WGNEG-----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (367)
Q Consensus 157 ~L~~dyiDl~~lH~p~~---~~~~~-----~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~ 212 (367)
...+.|.=||-+..-.. ....+ -...-+-|+.||+.+++ ++++++++.+.+
T Consensus 230 Avetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~v 288 (299)
T PRK11865 230 AVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQKYI 288 (299)
T ss_pred HHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHHHHH
Confidence 55577777766643111 00000 11222346789998888 667777776654
No 327
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.49 E-value=7.7e+02 Score=23.70 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=58.1
Q ss_pred EEEEecCCC------------CChHHHHHHHHH-HHHcCC---ccEEeecC--CCHHHHHHHHHHHHhcCCCeeEecccc
Q 017732 165 LYQLHWAGI------------WGNEGFIDGLGD-AVEQGL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (367)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~~L~~-l~~~G~---ir~iGvS~--~~~~~l~~~~~~~~~~~~~~~~~q~~~ 226 (367)
++-||.+++ ...+++.+++.+ +.+.|+ |+|+=+.. .+.++++++.+.++. ...-++-++|
T Consensus 211 aisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~--l~~~VnLiPy 288 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKG--MLCHVNLIPV 288 (342)
T ss_pred EEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEEec
Confidence 566788775 124566666655 344453 45555553 477888888877653 3467777999
Q ss_pred ccccCCc----ch---hcHHHHHHHhCCeEEeccccccc
Q 017732 227 SLIYRKP----EE---NGVKAACDELGITLIAYCPIAQG 258 (367)
Q Consensus 227 n~~~~~~----~~---~~~~~~~~~~gi~via~~pl~~G 258 (367)
|++.... .. ..+.+..+++|+.+......|.-
T Consensus 289 n~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G~d 327 (342)
T PRK14454 289 NEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGSD 327 (342)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 9965321 11 13566677889999887766643
No 328
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.43 E-value=3.3e+02 Score=25.36 Aligned_cols=58 Identities=7% Similarity=0.014 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeEecccccc---------cc--CCcchhcHHHHHHHhCCeEEeccccc
Q 017732 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSL---------IY--RKPEENGVKAACDELGITLIAYCPIA 256 (367)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~---------~~--~~~~~~~~~~~~~~~gi~via~~pl~ 256 (367)
+.+.+...+.++.|.+.|++...+--.+.- .. ....-.+++++++++||+|+-|.--.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 346677888888888888765555333321 01 11111258899999998888765443
No 329
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=20.42 E-value=8.9e+02 Score=24.40 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCceeEEEEecCCCCC-----hHHHHHHHH
Q 017732 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (367)
Q Consensus 110 E~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dyiDl~~lH~p~~~~-----~~~~~~~L~ 184 (367)
|+.|-+++.+...+++.+=|+|.|-+-. ..-.+.+..-+++.-++++ +.++.++.++... ....+++|.
T Consensus 104 ~~kL~~~I~ei~~~~~P~~I~V~tTC~~---~lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 104 EKKLFKAIDEIIEKYAPPAVFVYQTCVV---ALIGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNKNLGNKLAGEALL 177 (475)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCChH---HHhccCHHHHHHHHHHhhC---CCEEEEECCCcccchhhhHHHHHHHHH
Confidence 7788888877554333456777777642 2222223333333333443 5788888887632 233344333
Q ss_pred H-HH--------HcCCccEEeecCCCHHHHHHHHHHHHhcCCCee
Q 017732 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (367)
Q Consensus 185 ~-l~--------~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~ 220 (367)
+ +. +.+.|--||-.+.. ..+.++...++..|+++.
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~-gd~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLA-GELWQVKPLLDRLGIRVV 221 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCC-CCHHHHHHHHHHcCCeEE
Confidence 3 32 24567788866653 233444444555665543
No 330
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=20.39 E-value=7.4e+02 Score=23.49 Aligned_cols=130 Identities=16% Similarity=0.124 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHC-CCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHH
Q 017732 74 MKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (367)
Q Consensus 74 ~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~ 152 (367)
.++..+++++.-+. ||+.+--+ | |+... .++..|-+.+.....-..=+.+-|.||.. ...+..+...+-
T Consensus 127 ~~~~~~~i~~i~~~~~i~~Vvlt---G-GEPL~--~~d~~L~~ll~~l~~i~~~~~iri~tr~~----~~~p~rit~el~ 196 (321)
T TIGR03821 127 KAQWKEALEYIAQHPEINEVILS---G-GDPLM--AKDHRLDWLLNLLEQIPHLKRLRIHTRLP----VVIPDRITSGLC 196 (321)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEe---C-ccccc--CCchHHHHHHHHHHhCCCCcEEEEecCcc----eeeHHHhhHHHH
Confidence 35566666655533 77765322 1 32111 12333444443221100013566777752 334456666666
Q ss_pred HHHHhcCCCceeEEEEecCCC-CChHHHHHHHHHHHHcCCccEEeec-------CCCHHHHHHHHHHHHhcCC
Q 017732 153 DSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGI 217 (367)
Q Consensus 153 ~SL~~L~~dyiDl~~lH~p~~-~~~~~~~~~L~~l~~~G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~ 217 (367)
+.|+..+..++ +.+|-... .-.+++.++++.|++.|.. +++. |.+.+.+.++.+.+...++
T Consensus 197 ~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~--v~~qtvllkgiNDn~~~l~~L~~~l~~~gv 265 (321)
T TIGR03821 197 DLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGIT--LLNQSVLLRGVNDNADTLAALSERLFDAGV 265 (321)
T ss_pred HHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCE--EEecceeeCCCCCCHHHHHHHHHHHHHcCC
Confidence 67776664433 23454221 2235677788888888842 2221 2255566666555544444
No 331
>PRK15108 biotin synthase; Provisional
Probab=20.16 E-value=7.8e+02 Score=23.62 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeEEEEe--cCCCCChHHHHHHHHHHHHcCCccEEeecC--CCHHHHHHHHH
Q 017732 142 LGRQSVLAALKDSLFRLGLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYE 210 (367)
Q Consensus 142 ~~~~~i~~~l~~SL~~L~~dyiDl~~lH--~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~--~~~~~l~~~~~ 210 (367)
.+++.|.+.++. ...+|...+-+ ... .|.....+.+.+.++.+++.|. .+.+|+ .+.+.+.++.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHH
Confidence 567777776654 45678887733 222 3322345667777777777664 233554 45566666544
No 332
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.12 E-value=5.9e+02 Score=23.97 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=36.2
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHh
Q 017732 292 RIKELGENYSK------TSTQVGLNWLLAQDNVVPIPGAKNAEQAAEFAG 335 (367)
Q Consensus 292 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~vi~g~~~~~~l~enl~ 335 (367)
+|.++|++.|. ++.++=..|+-....|.+-.|+|+|+.|-+++-
T Consensus 229 rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 229 RLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred HHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHH
Confidence 78889998876 678888899988665689999999998877653
No 333
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=20.07 E-value=2.1e+02 Score=27.51 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=22.1
Q ss_pred ccccccccCCcch---hcHHHHHHHhCCeEEeccccc
Q 017732 223 QVNYSLIYRKPEE---NGVKAACDELGITLIAYCPIA 256 (367)
Q Consensus 223 q~~~n~~~~~~~~---~~~~~~~~~~gi~via~~pl~ 256 (367)
...||+.+..... .++.+.|+++||.+-.|-...
T Consensus 125 ~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 125 YTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp T-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 4566665533222 269999999999999876655
No 334
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=20.05 E-value=6.5e+02 Score=24.82 Aligned_cols=134 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHCCCCeEeCCCCcCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 017732 83 TSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS 162 (367)
Q Consensus 83 ~A~~~Gi~~~DTA~~Yg~g~s~~~~~sE~~lG~al~~~~~~~~R~~~~I~tK~g~~~~~~~~~~i~~~l~~SL~~L~~dy 162 (367)
.|+|.|+--+-||.--.- ....=.-|.+.. |.|+-++++ +..+.. .+..+|++||
T Consensus 72 AaLEGG~aa~a~aSG~AA---------~~~ai~~la~aG-----D~iVss~~L----YGGT~~----lf~~tl~~~G--- 126 (426)
T COG2873 72 AALEGGVAALAVASGQAA---------ITYAILNLAGAG-----DNIVSSSKL----YGGTYN----LFSHTLKRLG--- 126 (426)
T ss_pred HHhhcchhhhhhccchHH---------HHHHHHHhccCC-----CeeEeeccc----cCchHH----HHHHHHHhcC---
Q ss_pred eeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCCCHHHHHHHHHHHHhcCCCeeEeccccccccCCcchhcHHHHH
Q 017732 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (367)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~ 242 (367)
+..-+.|..+.+.+-+++.+=-+.=.+..||=-..+.-+++.+.+.|..++++..+--.--.++.-++.
T Consensus 127 ---i~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~-------- 195 (426)
T COG2873 127 ---IEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPI-------- 195 (426)
T ss_pred ---cEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchh--------
Q ss_pred HHhCCeEEecc
Q 017732 243 DELGITLIAYC 253 (367)
Q Consensus 243 ~~~gi~via~~ 253 (367)
++|..++.+|
T Consensus 196 -~hGADIVvHS 205 (426)
T COG2873 196 -EHGADIVVHS 205 (426)
T ss_pred -hcCCCEEEEe
No 335
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.02 E-value=6.2e+02 Score=22.42 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceeEEEEecCCCCChHHHHHHHHHHHHcCCccEEeecCC-CHHHHHHHHHHHHhcCCCeeEeccccc
Q 017732 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (367)
Q Consensus 149 ~~l~~SL~~L~~dyiDl~~lH~p~~~~~~~~~~~L~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~~~~~q~~~n 227 (367)
..+-+.|-+-|++.+.+=+ .....++.+++++++..=-.+|..+. +.++++++.+. |..|.+
T Consensus 23 ~~~~~al~~~Gi~~iEit~-------~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fiv------ 85 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTL-------RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFIV------ 85 (204)
T ss_pred HHHHHHHHHcCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEEE------
Q ss_pred cccCCcchhcHHHHHHHhCCeEEe
Q 017732 228 LIYRKPEENGVKAACDELGITLIA 251 (367)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gi~via 251 (367)
......++++.|+++||.++.
T Consensus 86 ---sP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 ---SPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ---CCCCCHHHHHHHHHcCCcEEC
Done!