BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017733
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 255/361 (70%), Positives = 305/361 (84%), Gaps = 5/361 (1%)
Query: 10 NIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVS 69
++PLLT YKMG+FNLSHR+VLAPLTR RSY ++PQPHA +YYSQRTT GGFLI EATGVS
Sbjct: 9 SVPLLTPYKMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGVS 68
Query: 70 NTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS 129
+TAQGY +TPGIWTKE VEAWKPIVDAVH KGGI FCQIWH GRVSN G QPNG+APIS
Sbjct: 69 DTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGKAPISC 128
Query: 130 TSKGVTP-----GVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ K + P G+D ++PPR L IEEIP IVNDFRLAARNA+EAGFDGVEIHGANGY
Sbjct: 129 SDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGY 188
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
LIDQFMKD VNDRTDEYGGSL+NRC+F LE+V+AV +EIG +RVG+RLSP+A+ E+ D+
Sbjct: 189 LIDQFMKDTVNDRTDEYGGSLQNRCKFPLEIVDAVAKEIGPDRVGIRLSPFADYMESGDT 248
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSR 304
NP ALGLYMA++LNK+ +LY HVIE RM + + +L+ MR+AF+GTFI+AGG++R
Sbjct: 249 NPGALGLYMAESLNKYGILYCHVIEARMKTMGEVHACPHTLMPMRKAFKGTFISAGGFTR 308
Query: 305 DEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFL 364
++GN+AV+ TDLVA+GR FLANPDLPKRF+++APLNKY+R TFY DPVVGYTDYPFL
Sbjct: 309 EDGNEAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFL 368
Query: 365 K 365
+
Sbjct: 369 E 369
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
Length = 376
Score = 535 bits (1377), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/360 (69%), Positives = 297/360 (82%), Gaps = 5/360 (1%)
Query: 11 IPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
IPL++ KMG+F L HR+VLAPLTR RSY +IPQPHAIL+YSQR+TNGG LI EAT +S
Sbjct: 14 IPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISE 73
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
T GY + PGIWTKEQVEAWKPIVDAVH KGGI FCQIWH GRVSN QPNGE PIS T
Sbjct: 74 TGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCT 133
Query: 131 SKGVTP-----GVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYL 185
+G+TP G+D ++ PR L+ +EIP+IVN+FR+AARNAIEAGFDGVEIHGA+GYL
Sbjct: 134 DRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYL 193
Query: 186 IDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSN 245
IDQFMKDQVNDR+D+YGGSLENRCRFALE+VEAV EIG++RVG+R+SP+A EA D+N
Sbjct: 194 IDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN 253
Query: 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRD 305
P ALGLYM ++LNK+ L Y HV+EPRM +K E SL+ MR+A++GTFI AGGY R+
Sbjct: 254 PTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDRE 313
Query: 306 EGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 365
+GN+A+ + DLVA+GRLF++NPDLPKRFELNAPLNKYNR TFY DP+VGYTDYPFL+
Sbjct: 314 DGNRALIEDRADLVAYGRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 373
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/385 (55%), Positives = 272/385 (70%), Gaps = 23/385 (5%)
Query: 3 AAATTTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLI 62
A++ N PL + YKMG+FNLSHR+VLAP+TR R+ N+IPQ YY QR T GGFLI
Sbjct: 8 ASSAQDGNNPLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLI 67
Query: 63 AEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPN 122
E T +S T+ GYP+ PGI+TKEQV WK IVD VH KG +IFCQ+WH GR S+ QP
Sbjct: 68 TEGTMISPTSAGYPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPA 127
Query: 123 GEAPISSTSKGVT--------PGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFD 174
G APISST K ++ G G+ + PR + EI ++V D+R +A NAIEAGFD
Sbjct: 128 GAAPISSTEKPISNRWRILMPDGTHGI-YPKPRAIGTYEISQVVEDYRRSALNAIEAGFD 186
Query: 175 GVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSP 234
G+EIHGA+GYLIDQF+KD +NDRTDEYGGSL NRC+F +VV+AVV IGA+RVG+R+SP
Sbjct: 187 GIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSP 246
Query: 235 YAECAEAVDSNPEALGLYMAKALNKF------KLLYLHVIEPRMI--------QLTDKSE 280
+ +A+DSNP +LGL + + LNK KL YLHV +PR + +L + E
Sbjct: 247 AIDYLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306
Query: 281 TQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAP 340
R + ++R A++GTFI +GGY+R+ G +AVA DLV++GRLF++NPDL R +LNAP
Sbjct: 307 EARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAP 366
Query: 341 LNKYNRSTFYIPDPVVGYTDYPFLK 365
LNKYNR TFY DPVVGYTDYPFL+
Sbjct: 367 LNKYNRKTFYTQDPVVGYTDYPFLQ 391
>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HS6|B Chain B, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HSA|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|2HSA|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|3HGS|A Chain A, Crystal Structure Of Tomato Opr3 In Complex With Phb
pdb|3HGS|B Chain B, Crystal Structure Of Tomato Opr3 In Complex With Phb
Length = 402
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/385 (55%), Positives = 272/385 (70%), Gaps = 23/385 (5%)
Query: 3 AAATTTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLI 62
A++ N PL + YKMG+FNLSHR+VLAP+TR R+ N+IPQ YY QR T GGFLI
Sbjct: 8 ASSAQDGNNPLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLI 67
Query: 63 AEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPN 122
E T +S T+ G+P+ PGI+TKEQV WK IVD VH KG +IFCQ+WH GR S+ QP
Sbjct: 68 TEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPA 127
Query: 123 GEAPISSTSKGVT--------PGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFD 174
G APISST K ++ G G+ + PR + EI ++V D+R +A NAIEAGFD
Sbjct: 128 GAAPISSTEKPISNRWRILMPDGTHGI-YPKPRAIGTYEISQVVEDYRRSALNAIEAGFD 186
Query: 175 GVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSP 234
G+EIHGA+GYLIDQF+KD +NDRTDEYGGSL NRC+F +VV+AVV IGA+RVG+R+SP
Sbjct: 187 GIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSP 246
Query: 235 YAECAEAVDSNPEALGLYMAKALNKF------KLLYLHVIEPRMI--------QLTDKSE 280
+ +A+DSNP +LGL + + LNK KL YLHV +PR + +L + E
Sbjct: 247 AIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306
Query: 281 TQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAP 340
R + ++R A++GTFI +GGY+R+ G +AVA DLV++GRLF++NPDL R +LNAP
Sbjct: 307 EARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAP 366
Query: 341 LNKYNRSTFYIPDPVVGYTDYPFLK 365
LNKYNR TFY DPVVGYTDYPFL+
Sbjct: 367 LNKYNRKTFYTQDPVVGYTDYPFLQ 391
>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
pdb|2HS8|B Chain B, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
Length = 402
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/385 (54%), Positives = 272/385 (70%), Gaps = 23/385 (5%)
Query: 3 AAATTTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLI 62
A++ N PL + YKMG+FNLSHR+VLAP+TR R+ N+IPQ YY QR T GGFLI
Sbjct: 8 ASSAQDGNNPLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLI 67
Query: 63 AEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPN 122
E T +S T+ G+P+ PGI+TKEQV WK IVD VH KG +IFCQ+WH GR S+ QP
Sbjct: 68 TEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPA 127
Query: 123 GEAPISSTSKGVT--------PGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFD 174
G APISST K ++ G G+ + PR + EI ++V D+R +A NAIEAGFD
Sbjct: 128 GAAPISSTEKPISNRWRILMPDGTHGI-YPKPRAIGTYEISQVVEDYRRSALNAIEAGFD 186
Query: 175 GVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSP 234
G+EIHGA+GYLIDQF+KD +NDRTDEYGGSL NRC+F +VV+AVV IGA+RVG+R+SP
Sbjct: 187 GIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSP 246
Query: 235 YAECAEAVDSNPEALGLYMAKALNKF------KLLYLHVIEPRMI--------QLTDKSE 280
+ +A+DSNP +LGL + + LNK KL YLHV +PR + +L + E
Sbjct: 247 AIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEE 306
Query: 281 TQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAP 340
R + ++R A++GTFI +GGY+R+ G +AVA DLV++GRLF++NPDL R +LNAP
Sbjct: 307 EARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAP 366
Query: 341 LNKYNRSTFYIPDPVVGYTDYPFLK 365
LNK+NR TFY DPVVGYTDYPFL+
Sbjct: 367 LNKFNRKTFYTQDPVVGYTDYPFLQ 391
>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|1Q45|B Chain B, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|2G5W|A Chain A, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2G5W|B Chain B, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2Q3O|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
pdb|2Q3O|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
Length = 391
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/384 (52%), Positives = 268/384 (69%), Gaps = 24/384 (6%)
Query: 4 AATTTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIA 63
AA +N L ++YKMG+F+LSHR+VLAP+TR R+ N +P YY+QRTT GGFLI+
Sbjct: 3 AAQGNSNETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLIS 62
Query: 64 EATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNG 123
E T VS + G+P+ PGI++ EQVEAWK +V+AVH KGG IFCQ+WH GR S+ QPNG
Sbjct: 63 EGTMVSPGSAGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNG 122
Query: 124 EAPISSTSKGVT--------PGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+PISST+K ++ P + + PR L EIP++V D+ L+A NAI AGFDG
Sbjct: 123 GSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAIRAGFDG 182
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
+EIHGA+GYLIDQF+KD +NDRTD+YGGS+ NRCRF +VVE VV IGA +VG+R+SP
Sbjct: 183 IEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPA 242
Query: 236 AECAEAVDSNPEALGLYMAKALNKF------KLLYLHVIEPRMI---------QLTDKSE 280
+ +A DS+P +LGL + LNK KL YLHV +PR Q +D+ E
Sbjct: 243 IDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEE 302
Query: 281 TQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAP 340
+ + S+R A+ GTF+++GG++++ G +AV DLV++GRLF+ANPDL RF+++
Sbjct: 303 A-KLMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGE 361
Query: 341 LNKYNRSTFYIPDPVVGYTDYPFL 364
LNKYNR TFY DPVVGYTDYPFL
Sbjct: 362 LNKYNRKTFYTQDPVVGYTDYPFL 385
>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With
Tetrahydronad
Length = 377
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 222/369 (60%), Gaps = 13/369 (3%)
Query: 6 TTTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEA 65
T+ +N L T ++G +L +R+++APLTR R+ + +P +YY QR + G +I+EA
Sbjct: 4 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEA 62
Query: 66 TGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEA 125
T +S TA+GY TPGIWT Q WK +V+AVH KGG I Q+WH GRVS+ +QP+G+
Sbjct: 63 TNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQ 122
Query: 126 PISSTSKGVT---------PGVDGLD-WSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
P++ ++ G GL S PR L +EIP IV D+R AA+ A AGFD
Sbjct: 123 PVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDM 182
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VE+H AN L +QF+ N RTD+YGGS+ENR RF LEVV+AV G ERVG+RL+P+
Sbjct: 183 VEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPF 242
Query: 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT 295
E D PEA+ Y+A L++ L YLH EP I D + + MR+ F+G
Sbjct: 243 LELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIG-GDITYPEGFREQMRQRFKGG 301
Query: 296 FIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPV 355
I G Y + N D VAFGR F+ANPDLP+RF L A LN+ + STFY
Sbjct: 302 LIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFY-GGAE 360
Query: 356 VGYTDYPFL 364
VGYTDYPFL
Sbjct: 361 VGYTDYPFL 369
>pdb|1GWJ|A Chain A, Morphinone Reductase
Length = 377
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 221/369 (59%), Gaps = 13/369 (3%)
Query: 6 TTTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEA 65
T+ +N L T ++G +L +R+++APLTR R+ + +P +YY QR + G +I+EA
Sbjct: 4 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEA 62
Query: 66 TGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEA 125
T +S TA+GY TPGIWT Q WK +V+AVH KGG I Q+WH GRVS+ +QP+G+
Sbjct: 63 TNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQ 122
Query: 126 PISSTSKGVT---------PGVDGLD-WSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
P++ ++ G GL S PR L + IP IV D+R AA+ A AGFD
Sbjct: 123 PVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYRQAAQRAKRAGFDM 182
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VE+H AN L +QF+ N RTD+YGGS+ENR RF LEVV+AV G ERVG+RL+P+
Sbjct: 183 VEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPF 242
Query: 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT 295
E D PEA+ Y+A L++ L YLH EP I D + + MR+ F+G
Sbjct: 243 LELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIG-GDITYPEGFREQMRQRFKGG 301
Query: 296 FIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPV 355
I G Y + N D VAFGR F+ANPDLP+RF L A LN+ + STFY
Sbjct: 302 LIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFY-GGAE 360
Query: 356 VGYTDYPFL 364
VGYTDYPFL
Sbjct: 361 VGYTDYPFL 369
>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex
With Tetrahydronad
Length = 377
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 167/369 (45%), Positives = 221/369 (59%), Gaps = 13/369 (3%)
Query: 6 TTTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEA 65
T+ +N L T ++G +L +R+++APLTR R+ + +P +YY QR + G +I+EA
Sbjct: 4 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEA 62
Query: 66 TGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEA 125
T +S TA+GY TPGIWT Q WK +V+AVH KGG I Q+WH GRVS+ +QP+G+
Sbjct: 63 TNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQ 122
Query: 126 PISSTSKGVT---------PGVDGLD-WSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
P++ ++ G GL S PR L +EIP IV D+R AA+ A AGFD
Sbjct: 123 PVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDM 182
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VE+H A L +QF+ N RTD+YGGS+ENR RF LEVV+AV G ERVG+RL+P+
Sbjct: 183 VEVHAAAACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPF 242
Query: 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT 295
E D PEA+ Y+A L++ L YLH EP I D + + MR+ F+G
Sbjct: 243 LELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIG-GDITYPEGFREQMRQRFKGG 301
Query: 296 FIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPV 355
I G Y + N D VAFGR F+ANPDLP+RF L A LN+ + STFY
Sbjct: 302 LIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFY-GGAE 360
Query: 356 VGYTDYPFL 364
VGYTDYPFL
Sbjct: 361 VGYTDYPFL 369
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/357 (42%), Positives = 215/357 (60%), Gaps = 9/357 (2%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIR-SYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L + G F +R+ +APLTR R + +H+P YY+QR + G +I+EATG+S
Sbjct: 4 LFDPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRAS-AGLIISEATGISQE 62
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRV--SNY-GLQPNGEAPIS 128
G+P PGIW+ QVEAW PI AVH GG+IF Q+WH GR+ SN G+QP AP +
Sbjct: 63 GLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMVPSNVSGMQPV--APSA 120
Query: 129 STSKGVTPGVDGLD-WSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLID 187
S + G+ DG + R L ++EIP++++D+ AAR+A++AGFDGV+IH ANGYLID
Sbjct: 121 SQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAANGYLID 180
Query: 188 QFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247
+F++D N R DEYGG++ENR R +V E V+ IG ER +RLSP E VDS+PE
Sbjct: 181 EFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPE 240
Query: 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEG 307
+ + AK L+ + +L + E + K++ + +R+ F+ + Y+ +
Sbjct: 241 QVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQDYTFETA 300
Query: 308 NKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFL 364
A+ + D ++FGR F+ NPDLP+RF APL K T+Y P GYTDYP L
Sbjct: 301 QAALDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWYTQTP-KGYTDYPLL 356
>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
pdb|3GKA|B Chain B, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
Length = 361
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/363 (42%), Positives = 220/363 (60%), Gaps = 22/363 (6%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAIL--YYSQRTTNGGFLIAEATGVSN 70
L +G L++R+++APLTR R+ P+A++ YY++R + G +I+EAT V+
Sbjct: 12 LFDPLTIGDLTLANRIIMAPLTRARA-GDTRTPNALMARYYAERAS-AGLIISEATSVTP 69
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
GY +TPGIW+ EQV+ W+ + DAVH GG IF Q+WH GRVS+ +G P++ +
Sbjct: 70 QGVGYASTPGIWSPEQVDGWRLVTDAVHAAGGRIFLQLWHVGRVSDPVFL-DGALPVAPS 128
Query: 131 SKGVTPGVDGLDWSP------PRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + PG P PR L ++EIP +V FR A NA AGFDGVE+HGANGY
Sbjct: 129 A--IAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGANGY 186
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L+DQF++D N RTD YGGS+ENR R LEVV+A + A RVG+ L+P + DS
Sbjct: 187 LLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDS 246
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSR 304
+P A ++A+ L + ++ +L E + Q+ ++ AF G FI ++
Sbjct: 247 DPAATFGHVARELGRRRIAFLFARE----SFGGDAIGQQ----LKAAFGGPFIVNENFTL 298
Query: 305 DEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFL 364
D A+ A D VA+G+LF+ANPDLP+RF+LNAPLN+ N +TFY VGYTDYP L
Sbjct: 299 DSAQAALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAATFYAQGE-VGYTDYPAL 357
Query: 365 KLA 367
+ A
Sbjct: 358 ESA 360
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 209/361 (57%), Gaps = 18/361 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRS-YNHIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L K+G L +R+++APLTR R+ +P YY QR + G +++EAT VS
Sbjct: 4 LFDPIKLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRAS-AGLILSEATSVSPM 62
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
GYP+TPGIW EQV W + AVH GG IF Q+WH GR+S+ NGE P++ ++
Sbjct: 63 GVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYL-NGELPVAPSA 121
Query: 132 ---KGVTPGVDGL-DWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLID 187
KG V L D+ PR L EEI IV +R A NA AGFDGVEIHGANGYL+D
Sbjct: 122 IQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLD 181
Query: 188 QFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247
QF++ N RTD YGGSLENR R LEV +A + GA+RVG+ L+P A+ + D++
Sbjct: 182 QFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRA 241
Query: 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSM-RRAFEGTFIAAGGYSRDE 306
Y+A+ L K + ++ + + E S+ + + AF G +I + +
Sbjct: 242 ETFTYVARELGKRGIAFI---------CSREREADDSIGPLIKEAFGGPYIVNERFDKAS 292
Query: 307 GNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLKL 366
N A+A+ D VAFG F+ANPDLP R +APLN+ + TFY P VGY DYP LKL
Sbjct: 293 ANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHPETFYGKGP-VGYIDYPRLKL 351
Query: 367 A 367
A
Sbjct: 352 A 352
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 272 bits (695), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
NGYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 NGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/365 (42%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 123
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 184 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 242
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 243 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 300
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 301 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 359
Query: 360 DYPFL 364
DYP L
Sbjct: 360 DYPSL 364
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APL+R+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLSRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 123
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+G+L+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 184 HGFLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 242
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 243 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 300
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 301 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 359
Query: 360 DYPFL 364
DYP L
Sbjct: 360 DYPSL 364
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +F+ GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFF-GGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 207/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN R + GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNP-QRPESFAGGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 267 bits (682), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 220/363 (60%), Gaps = 19/363 (5%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L +G L +R+V+ P+TR R+ + +YY+QR + G +++E T +S
Sbjct: 5 LFQPITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRAS-AGLIVSEGTQISP 63
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
TA+GY TPGI+T EQ+ W+ + +AVH KG IF Q+WH GRV++ +G+ PISS+
Sbjct: 64 TAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRVTHPD-NIDGQQPISSS 122
Query: 131 S---KGVTPGVDG-------LDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHG 180
+ + V VD +D + PR ++ +I +++ D+R AA NA+EAGFDG+E+H
Sbjct: 123 TLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALNAMEAGFDGIELHA 182
Query: 181 ANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240
ANGYLI+QF+ + N+R+DEYGGSLENR RF EVV A+V IGAERVG+RL+P
Sbjct: 183 ANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNG 242
Query: 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL-LSMRRAFEGTFIAA 299
VD++P A LNK +++YLH+ E + D +T S ++R A++G I A
Sbjct: 243 TVDADPILTYTAAAALLNKHRIVYLHIAE---VDWDDAPDTPVSFKRALREAYQGVLIYA 299
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ +A+ D++ FGR F+ANPDLP+R PL ++ +T + G T
Sbjct: 300 GRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPATLF-GGGEKGLT 358
Query: 360 DYP 362
DYP
Sbjct: 359 DYP 361
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 267 bits (682), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE++ A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELNSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 267 bits (682), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 207/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q+WH GR+S+ +QP G+AP+S++
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 243
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 244 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 301
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN R + GYT
Sbjct: 302 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNP-QRPESFSGGGAEGYT 360
Query: 360 DYPFL 364
DYP L
Sbjct: 361 DYPSL 365
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q++H GR+S+ +QP G+AP+S++
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLYHTGRISHSSIQPGGQAPVSAS 123
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 184 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 242
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 243 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 300
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 301 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 359
Query: 360 DYPFL 364
DYP L
Sbjct: 360 DYPSL 364
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 208/365 (56%), Gaps = 18/365 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
L T K+G +R+ +APLTR+RS IP P YY QR + G +I+EAT +S
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISST 130
A+GY PG+ + EQ+ AWK I VH + G I Q++H GR+S+ +QP G+AP+S++
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLFHTGRISHSSIQPGGQAPVSAS 123
Query: 131 SKGVTPGVD---------GLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181
+ +D + PR L ++EIP IVNDFR A NA EAGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241
+GYL+ QF+ N RTD+YGGS+ENR R LEVV+AV E A+R+G+R+SP +
Sbjct: 184 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIG-TFQN 242
Query: 242 VDSNP--EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA 299
VD+ P EA LY+ + L K + YLH+ E + SE R +R F G I A
Sbjct: 243 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQ--KVRERFHGVIIGA 300
Query: 300 GGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYT 359
G Y+ ++ + D VAFGR ++ANPDL R + A LN +FY GYT
Sbjct: 301 GAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFY-GGGAEGYT 359
Query: 360 DYPFL 364
DYP L
Sbjct: 360 DYPSL 364
>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye
pdb|3ATY|B Chain B, Crystal Structure Of Tcoye
pdb|3ATZ|A Chain A, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|B Chain B, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|C Chain C, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|D Chain D, Crystal Structure Of Tcoye With Phba
Length = 379
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 208/374 (55%), Gaps = 29/374 (7%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSY--NHIPQPHAILYYSQRTTNGGFLIAEATGVSN 70
LL K+G++ L +R+++APLTR ++ +H+P+ ++L Y + + G +IAEAT V
Sbjct: 7 LLRPLKLGRYTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRASAGLIIAEATMVQP 66
Query: 71 TAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGR--VSNYGLQ--PNGEAP 126
G+ PGI++ Q+E W+ IVDAVH+KGG+IF Q+ HAGR + LQ + + P
Sbjct: 67 NYTGFLTEPGIYSDAQIEEWRKIVDAVHKKGGLIFLQLIHAGRAGIPEKILQQSKSDQDP 126
Query: 127 ISST--SKGVTPGVDGL------------DWSPPRPLSIEEIPK-IVNDFRLAARNAI-E 170
++ + P D + P L+ +E+ I+ F A+NAI +
Sbjct: 127 LAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEELTDDEVRDGIIPLFVEGAKNAIFK 186
Query: 171 AGFDGVEIHGANGYLIDQFMKDQVNDR-TDEYGGS-LENRCRFALEVVEAVVREIGAERV 228
AGFDGVEIHGANGYL+D F ++ N R + Y G+ ++ RC+ +V ++V +G++RV
Sbjct: 187 AGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRV 246
Query: 229 GMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSM 288
G+R+SP +DSNPEAL ++ K + L YLH + M+ + + +
Sbjct: 247 GLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN----QQIGDVVAWV 302
Query: 289 RRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRST 348
R ++ G I+ Y +E ++ + D VAFG F+ANPDL +R + N PLN+ T
Sbjct: 303 RGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPLNEPRPET 362
Query: 349 FYIPDPVVGYTDYP 362
+Y VGY DYP
Sbjct: 363 YYT-RTAVGYNDYP 375
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAG------RVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+W G ++ GL+ +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 136
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 137 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 188
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEIH ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 189 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 248
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 249 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 308
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 309 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 368
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 369 KYDRDTFY-QMSAHGYIDYP 387
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 205/380 (53%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAG------RVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ +W G ++ GL+ +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVNLWVLGWAAFPDNLARDGLRYD 135
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 136 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 187
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEIH ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 188 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 247
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 248 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 307
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 367
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 368 KYDRDTFY-QMSAHGYIDYP 386
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 213 bits (543), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAG------RVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+W G ++ GL+ +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 135
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 136 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 187
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEI+ ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 188 VEINSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 247
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 248 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 307
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 367
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 368 KYDRDTFY-QMSAHGYIDYP 386
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQI----WHA--GRVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+ W A ++ GL+ +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYD 136
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 137 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 188
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEIH ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 189 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 248
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 249 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 308
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 309 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 368
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 369 KYDRDTFY-QMSAHGYIDYP 387
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQI----WHA--GRVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+ W A ++ GL+ +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLQVLGWAAFPDNLARDGLRYD 136
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 137 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 188
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEIH ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 189 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 248
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 249 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 308
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 309 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 368
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 369 KYDRDTFY-QMSAHGYIDYP 387
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQI----WHA--GRVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+ W A ++ GL+ +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFPDNLARDGLRYD 135
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 136 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 187
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEIH ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 188 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 247
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 248 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 307
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 367
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 368 KYDRDTFY-QMSAHGYIDYP 386
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQI----WHA--GRVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+ W A ++ GL+ +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFPDNLARDGLRYD 136
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 137 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 188
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEIH ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 189 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 248
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 249 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 308
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 309 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 368
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 369 KYDRDTFY-QMSAHGYIDYP 387
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQI----WHA--GRVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+ W A ++ GL+ +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLLVLGWAAFPDNLARDGLRYD 136
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 137 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 188
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEIH ANGYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 189 VEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 248
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 249 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 308
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 309 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 368
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 369 KYDRDTFY-QMSAHGYIDYP 387
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 206/380 (54%), Gaps = 39/380 (10%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN--HIP-QPHAILYYSQRTTN-GGFLIAEATGV 68
L K+G L HR V+ PLTR+R+ + +IP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 69 SNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAG------RVSNYGLQPN 122
S A GY N PG+W++EQ+ W I +A+H+K ++ Q+W G ++ GL+ +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 135
Query: 123 G-------EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDG 175
+A + +K +P L+ +EI + + ++ AA+N+I AG DG
Sbjct: 136 SASDNVFMDAEQEAKAKKAN--------NPQHSLTKDEIKQYIKEYVQAAKNSIAAGADG 187
Query: 176 VEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235
VEI+ A+GYL++QF+ N RTDEYGGS+ENR RF LEVV+A+V IG E+VG+RLSPY
Sbjct: 188 VEINSAHGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY 247
Query: 236 A---ECAEAVDSNPEALGLYMAKALNKF-----KLLYLHVIEPRM----IQLTDKSETQR 283
+ ++ A Y+A L K +L ++H++EPR+ + +
Sbjct: 248 GVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG 307
Query: 284 SLLSMRRAFEGTFIAAGGYS-RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLN 342
S + ++G I AG ++ E + + L+ +GR F++NPDL R E PLN
Sbjct: 308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLN 367
Query: 343 KYNRSTFYIPDPVVGYTDYP 362
KY+R TFY GY DYP
Sbjct: 368 KYDRDTFY-QMSAHGYIDYP 386
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 197/368 (53%), Gaps = 26/368 (7%)
Query: 18 KMGQFNLSHRMVLAPLTRIRSY-NHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGY 75
K+G L ++V P TR R+ +H P + YY R+T G LI EAT VS A GY
Sbjct: 19 KVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
Query: 76 PNT-PGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYG-LQPNGEAPISST--- 130
PGIWT + +AWK I D VH G + Q+ GRV++ ++ G P+S++
Sbjct: 79 EGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATY 138
Query: 131 -SKGVTPGVDGLDWSPPRPLSIEEIPKIVND-FRLAARNAIEAGFDGVEIHGANGYLIDQ 188
S + + +P R L+ +E+ +V + + AA+ A++AGFD +E+H A+GYL+DQ
Sbjct: 139 ESDAAKEAAEAVG-NPVRALTTQEVKDLVYETYTNAAQKAMDAGFDYIELHAAHGYLLDQ 197
Query: 189 FMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC----AEAVDS 244
F++ N RTDEYGGS+ENR R LE+++ + +GA+++G+R+SP+A A
Sbjct: 198 FLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTV 257
Query: 245 NPEALGLYMAKALNKFK-----LLYLHVIEPRMIQLTDKSETQRSLLS--MRRAFEGTFI 297
+P Y+ L + + Y+ V+EPR+ D SE ++ + + + ++G +
Sbjct: 258 HPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVIL 317
Query: 298 AAGGYSRD----EGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPD 353
AG YS D + K A+ LV F R F +NP+L + L Y+R+TFY D
Sbjct: 318 KAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFY-SD 376
Query: 354 PVVGYTDY 361
GY +
Sbjct: 377 NNYGYNTF 384
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 197/368 (53%), Gaps = 26/368 (7%)
Query: 18 KMGQFNLSHRMVLAPLTRIRSY-NHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGY 75
K+G L ++V P TR R+ +H P + YY R+T G LI EAT VS A GY
Sbjct: 19 KVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
Query: 76 PNT-PGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYG-LQPNGEAPISST--- 130
PGIWT + +AWK I D VH G + Q+ GRV++ ++ G P+S++
Sbjct: 79 EGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATY 138
Query: 131 -SKGVTPGVDGLDWSPPRPLSIEEIPKIVND-FRLAARNAIEAGFDGVEIHGANGYLIDQ 188
S + + +P R L+ +E+ +V + + AA+ A++AGFD +E+H A+GYL+DQ
Sbjct: 139 ESDAAKEAAEAVG-NPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQ 197
Query: 189 FMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC----AEAVDS 244
F++ N RTDEYGGS+ENR R LE+++ + +GA+++G+R+SP+A A
Sbjct: 198 FLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTV 257
Query: 245 NPEALGLYMAKALNKFK-----LLYLHVIEPRMIQLTDKSETQRSLLS--MRRAFEGTFI 297
+P Y+ L + + Y+ V+EPR+ D SE ++ + + + ++G +
Sbjct: 258 HPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVIL 317
Query: 298 AAGGYSRD----EGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPD 353
AG YS D + K A+ LV F R F +NP+L + L Y+R+TFY D
Sbjct: 318 KAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFY-SD 376
Query: 354 PVVGYTDY 361
GY +
Sbjct: 377 NNYGYNTF 384
>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
Length = 343
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 165/340 (48%), Gaps = 37/340 (10%)
Query: 18 KMGQFNLSHRMVLAPLTRIR-SYNHIPQPHAILYYSQRTTNG-GFLIAEATGVSNTAQGY 75
K+ + +R++++P+ S + +P I++Y+ R G G ++ EAT V + +
Sbjct: 9 KIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRIT 68
Query: 76 PNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPN-GEAPISSTSKGV 134
+ GIW EQV+ K IVD G ++ Q+ HAGR N + G +PI +
Sbjct: 69 DHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKA----- 123
Query: 135 TPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQV 194
G + PR LS+EEI IV F AA+ A AG+D VEIH A+GYLI +F+
Sbjct: 124 -----GDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLS 178
Query: 195 NDRTDEYGGSLENRCRFALEVVEAVVREIGAER-VGMRLSP--YAECAEAVDSNPEALGL 251
N R DEYG S+ENR RF +EV++ V + + + +R+S Y E +D E + +
Sbjct: 179 NKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINM 238
Query: 252 YMAKA----LNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEG 307
K ++ LL + + Q+ +ET + +++ + G +++
Sbjct: 239 IKDKVDLIDVSSGGLLNVDINLYPGYQVK-YAETIKKRCNIKTSAVGLIT-----TQELA 292
Query: 308 NKAVAANYTDLVAFGRLFLANP-----------DLPKRFE 336
+ ++ DLVA GR L NP D PK++E
Sbjct: 293 EEILSNERADLVALGRELLRNPYWVLHTYTSKEDWPKQYE 332
>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
Length = 337
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 165/340 (48%), Gaps = 37/340 (10%)
Query: 18 KMGQFNLSHRMVLAPLTRIR-SYNHIPQPHAILYYSQRTTNG-GFLIAEATGVSNTAQGY 75
K+ + +R++++P+ S + +P I++Y+ R G G ++ EAT V + +
Sbjct: 9 KIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRIT 68
Query: 76 PNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPN-GEAPISSTSKGV 134
+ GIW EQV+ K IVD G ++ Q+ HAGR N + G +PI +
Sbjct: 69 DHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKA----- 123
Query: 135 TPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQV 194
G + PR LS+EEI IV F AA+ A AG+D VEIH A+GYLI +F+
Sbjct: 124 -----GDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLS 178
Query: 195 NDRTDEYGGSLENRCRFALEVVEAVVREIGAER-VGMRLSP--YAECAEAVDSNPEALGL 251
N R DEYG S+ENR RF +EV++ V + + + +R+S Y E +D E + +
Sbjct: 179 NKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINM 238
Query: 252 YMAKA----LNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEG 307
K ++ LL + + Q+ +ET + +++ + G +++
Sbjct: 239 IKDKVDLIDVSSGGLLNVDINLYPGYQVK-YAETIKKRCNIKTSAVGLIT-----TQELA 292
Query: 308 NKAVAANYTDLVAFGRLFLANP-----------DLPKRFE 336
+ ++ DLVA GR L NP D PK++E
Sbjct: 293 EEILSNERADLVALGRELLRNPYWVLHTYTSKEDWPKQYE 332
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 122/245 (49%), Gaps = 25/245 (10%)
Query: 10 NIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNH---IPQPHAILYYSQRTTNGGFLIAEAT 66
N L + Y + L +R+V++P+ + H I Y ++ G +I EAT
Sbjct: 2 NTMLFSPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEAT 61
Query: 67 GVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAP 126
GV+ + GIW+ + + + +V V + G I Q+ HAGR S Q GE
Sbjct: 62 GVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKS----QVPGEI- 116
Query: 127 ISSTSKGVTPGVDGLDWSPPRP--LSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ P D S P P ++ +I + V F+ AR A EAGFD +EIH A+GY
Sbjct: 117 -------IAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGY 169
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
LI++F+ N R DEYGGS ENR RF EV++A VRE+ + +R+S A D
Sbjct: 170 LINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDA-VREVWDGPLFVRIS-------ASDY 221
Query: 245 NPEAL 249
+P+ L
Sbjct: 222 HPDGL 226
>pdb|3L67|A Chain A, Xenobiotic Reductase A - C25s Variant
pdb|3L68|A Chain A, Xenobiotic Reductase A - C25s Variant With Coumarin
Length = 363
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 14/330 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN-HIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L Y + L +R+ + P+++ + + I H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMSQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
+ P GIW+ +A+ P+V A+ G + QI HAGR ++ G+ I++
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 132 ----KGVTPGVDGLDW---SPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + P PR +++++I ++ DF AAR A +AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L F + N RTD YGGS +NR RF LE + A VRE+ E + + + D
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETL-AAVREVWPENLPLTARFGVLEYDGRDE 242
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAFEGTFIAAG 300
+ +A+ L L V I T+ + +RR + +A
Sbjct: 243 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAW 302
Query: 301 GYSRDE-GNKAVAANYTDLVAFGRLFLANP 329
G+ + A+ AN DLV+ GR LA+P
Sbjct: 303 GFGTPQLAEAALQANQLDLVSVGRAHLADP 332
>pdb|3N14|A Chain A, Xena - W358a
Length = 363
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 14/330 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN-HIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L Y + L +R+ + P+ + + + I H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
+ P GIW+ +A+ P+V A+ G + QI HAGR ++ G+ I++
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 132 ----KGVTPGVDGLDW---SPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + P PR +++++I ++ DF AAR A +AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L F + N RTD YGGS +NR RF LE + A VRE+ E + + + D
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETL-AAVREVWPENLPLTARFGVLEYDGRDE 242
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAFEGTFIAAG 300
+ +A+ L L V I T+ + +RR + +A
Sbjct: 243 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAW 302
Query: 301 GYSRDE-GNKAVAANYTDLVAFGRLFLANP 329
G+ + A+ AN DLV+ GR LA+P
Sbjct: 303 GFGTPQLAEAALQANQLDLVSVGRAHLADP 332
>pdb|3L65|A Chain A, Xenobiotic Reductase A - C25a Mutant
pdb|3L66|A Chain A, Xenobiotic Reductase A - C25a Variant With Coumarin
Length = 363
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 14/330 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN-HIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L Y + L +R+ + P+ + + + I H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMAQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
+ P GIW+ +A+ P+V A+ G + QI HAGR ++ G+ I++
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 132 ----KGVTPGVDGLDW---SPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + P PR +++++I ++ DF AAR A +AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L F + N RTD YGGS +NR RF LE + A VRE+ E + + + D
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETL-AAVREVWPENLPLTARFGVLEYDGRDE 242
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAFEGTFIAAG 300
+ +A+ L L V I T+ + +RR + +A
Sbjct: 243 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAW 302
Query: 301 GYSRDE-GNKAVAANYTDLVAFGRLFLANP 329
G+ + A+ AN DLV+ GR LA+P
Sbjct: 303 GFGTPQLAEAALQANQLDLVSVGRAHLADP 332
>pdb|3L5L|A Chain A, Xenobiotic Reductase A - Oxidized
pdb|3L5M|A Chain A, Xenobiotic Reductase A - Coumarin Bound
pdb|3N19|B Chain B, Xena - Reduced
pdb|3N19|D Chain D, Xena - Reduced
Length = 363
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 14/330 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN-HIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L Y + L +R+ + P+ + + + I H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
+ P GIW+ +A+ P+V A+ G + QI HAGR ++ G+ I++
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 132 ----KGVTPGVDGLDW---SPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + P PR +++++I ++ DF AAR A +AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L F + N RTD YGGS +NR RF LE + A VRE+ E + + + D
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETL-AAVREVWPENLPLTARFGVLEYDGRDE 242
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAFEGTFIAAG 300
+ +A+ L L V I T+ + +RR + +A
Sbjct: 243 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAW 302
Query: 301 GYSRDE-GNKAVAANYTDLVAFGRLFLANP 329
G+ + A+ AN DLV+ GR LA+P
Sbjct: 303 GFGTPQLAEAALQANQLDLVSVGRAHLADP 332
>pdb|2H8X|A Chain A, Xenobiotic Reductase A-Oxidized
Length = 358
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 14/330 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN-HIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L Y + L +R+ + P+ + + + I H + G L+ EAT V+
Sbjct: 2 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 61
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
+ P GIW+ +A+ P+V A+ G + QI HAGR ++ G+ I++
Sbjct: 62 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 121
Query: 132 ----KGVTPGVDGLDW---SPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + P PR +++++I ++ DF AAR A +AGF+ +E+H A+GY
Sbjct: 122 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 181
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L F + N RTD YGGS +NR RF LE + A VRE+ E + + + D
Sbjct: 182 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETL-AAVREVWPENLPLTARFGVLEYDGRDE 240
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAFEGTFIAAG 300
+ +A+ L L V I T+ + +RR + +A
Sbjct: 241 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAW 300
Query: 301 GYSRDE-GNKAVAANYTDLVAFGRLFLANP 329
G+ + A+ AN DLV+ GR LA+P
Sbjct: 301 GFGTPQLAEAALQANQLDLVSVGRAHLADP 330
>pdb|2H8Z|A Chain A, Xenobiotic Reductase A In Complex With 8-Hydroxycoumarin
pdb|2H90|A Chain A, Xenobiotic Reductase A In Complex With Coumarin
Length = 359
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 14/330 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN-HIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L Y + L +R+ + P+ + + + I H + G L+ EAT V+
Sbjct: 3 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 62
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
+ P GIW+ +A+ P+V A+ G + QI HAGR ++ G+ I++
Sbjct: 63 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 122
Query: 132 ----KGVTPGVDGLDW---SPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + P PR +++++I ++ DF AAR A +AGF+ +E+H A+GY
Sbjct: 123 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 182
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L F + N RTD YGGS +NR RF LE + A VRE+ E + + + D
Sbjct: 183 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETL-AAVREVWPENLPLTARFGVLEYDGRDE 241
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAFEGTFIAAG 300
+ +A+ L L V I T+ + +RR + +A
Sbjct: 242 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAW 301
Query: 301 GYSRDE-GNKAVAANYTDLVAFGRLFLANP 329
G+ + A+ AN DLV+ GR LA+P
Sbjct: 302 GFGTPQLAEAALQANQLDLVSVGRAHLADP 331
>pdb|3N16|A Chain A, Xena - Y183f
Length = 363
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 148/330 (44%), Gaps = 14/330 (4%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYN-HIPQPHAILYYSQRTTNGGFLIAEATGVSNT 71
L Y + L +R+ + P+ + + + I H + G L+ EAT V+
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 72 AQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTS 131
+ P GIW+ +A+ P+V A+ G + QI HAGR ++ G+ I++
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 132 ----KGVTPGVDGLDW---SPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184
+ + P PR +++++I ++ DF AAR A +AGF+ +E+H A+G+
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGF 183
Query: 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244
L F + N RTD YGGS +NR RF LE + A VRE+ E + + + D
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETL-AAVREVWPENLPLTARFGVLEYDGRDE 242
Query: 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAFEGTFIAAG 300
+ +A+ L L V I T+ + +RR + +A
Sbjct: 243 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAW 302
Query: 301 GYSRDE-GNKAVAANYTDLVAFGRLFLANP 329
G+ + A+ AN DLV+ GR LA+P
Sbjct: 303 GFGTPQLAEAALQANQLDLVSVGRAHLADP 332
>pdb|1Z41|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z41|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z42|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z42|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z44|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z44|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z48|A Chain A, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
pdb|1Z48|B Chain B, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
Length = 338
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 13/210 (6%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYNH---IPQPHAILYYSQRTTNGGFLIAEATGVS 69
L T + L +R+V +P S+ + H Y S+ G +I EA+ V+
Sbjct: 5 LFTPITIKDXTLKNRIVXSPXCXYSSHEKDGKLTPFHXAHYISRAIGQVGLIIVEASAVN 64
Query: 70 NTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS 129
+ GIW+ E +E + + + V ++G I Q+ HAGR + + I+
Sbjct: 65 PQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAF 124
Query: 130 TSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQF 189
+ TP S E++ + V +F+ AA A EAGFD +EIH A+GYLI +F
Sbjct: 125 DEQSATP----------VEXSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEF 174
Query: 190 MKDQVNDRTDEYGGSLENRCRFALEVVEAV 219
+ N RTDEYGGS ENR RF E+++ V
Sbjct: 175 LSPLSNHRTDEYGGSPENRYRFLREIIDEV 204
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
Length = 349
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 5/214 (2%)
Query: 13 LLTAYKMGQFNLSHRMVLAPLTRIRSY--NHIPQPHAILYYSQRTTNG-GFLIAEATGVS 69
L T ++G L +R+ ++P+ + + + H +L+Y R G G ++ EAT V
Sbjct: 4 LFTPLELGGLRLKNRLAMSPMCQYSATLEGEVTDWH-LLHYPTRALGGVGLILVEATAVE 62
Query: 70 NTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS 129
+ P GIW+++ + K + + + G + Q+ HAGR + G P+
Sbjct: 63 PLGRISPYDLGIWSEDHLPGLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGW 122
Query: 130 TSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQF 189
G +P + P PL + +I+ F AR A+ AGF +E+H A+GYL+ F
Sbjct: 123 RVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSF 182
Query: 190 MKDQVNDRTDEYGGSLENRCRFALEVVEAVVREI 223
+ N RTD YGGSLENR RF L+V +A VRE+
Sbjct: 183 LSPLSNQRTDAYGGSLENRMRFPLQVAQA-VREV 215
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 14/177 (7%)
Query: 50 YYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKE--QVEAWKPIVDAVHQKGGIIFCQ 107
+Y++R +G LI G++ G G + Q+ + I +AVHQ+GG I Q
Sbjct: 42 FYAERARHGVALIVSG-GIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQ 100
Query: 108 IWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARN 167
I H GR Y QP+ AP + + ++ P LS EEI +++++F A+
Sbjct: 101 ILHTGR---YSYQPHLVAPSALQAP--------INRFVPHELSHEEILQLIDNFARCAQL 149
Query: 168 AIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIG 224
A EAG+DGVE+ G+ GYLI++F+ + N R+D++GG NR RFA+EVV AV +G
Sbjct: 150 AREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVG 206
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 81 IWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDG 140
IW + + A K I DA+H+ GG+ ++ H G N Q + E P+ V P D
Sbjct: 82 IWDDQDLPALKRIADAIHEGGGLAGIELAHNG--MNAPNQLSRETPLGPGHLPVAP--DT 137
Query: 141 LDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYL-IDQFMKDQVNDRTD 199
+ R ++ ++I + R A R +IEAG+D V ++GA+GY + F+ + N RTD
Sbjct: 138 IAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTD 197
Query: 200 EYGGSLENRCRFALEVVEAVVREI-GAERVGMRLS 233
EYGGSLENR R E++E + E G V R++
Sbjct: 198 EYGGSLENRMRLLRELLEDTLDECAGRAAVACRIT 232
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 81 IWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDG 140
IW + V K + D VH+ G + ++W+ G + PN E+ +T +G +
Sbjct: 77 IWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHA-----PNMES--RATPRGPSQYASE 129
Query: 141 LD-WSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTD 199
+ S + + + +I ++ + AA+ + +AGFD V ++GA+ YL QF+ N RTD
Sbjct: 130 FETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTD 189
Query: 200 EYGGSLENRCRFALEVVEAVVREIGAE 226
+YGGSLENR RF LE +E V +G++
Sbjct: 190 KYGGSLENRARFWLETLEKVKHAVGSD 216
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 81 IWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDG 140
IW + V K + D VH+ G + ++W+ G + PN E+ +T +G +
Sbjct: 77 IWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHA-----PNMES--RATPRGPSQYASE 129
Query: 141 LD-WSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTD 199
+ S + + + +I ++ + AA+ + +AGFD V ++GA+ YL QF+ N RTD
Sbjct: 130 FETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTD 189
Query: 200 EYGGSLENRCRFALEVVEAVVREIGAE 226
+YGGSLENR RF LE +E V +G++
Sbjct: 190 KYGGSLENRARFWLETLEKVKHAVGSD 216
>pdb|3L5A|A Chain A, Crystal Structure Of A Probable Nadh-Dependent Flavin
Oxidoreductase From Staphylococcus Aureus
Length = 419
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 98/235 (41%), Gaps = 21/235 (8%)
Query: 12 PLLTAYKM-GQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTN-GGFLIAEATGVS 69
PLL + + +S+R VL+P T S A L Y+ R +N G + A +
Sbjct: 26 PLLQSIHLPNGIKISNRFVLSPXTVNASTKEGYITKADLAYAARRSNSAGXQVTGAAYIE 85
Query: 70 NTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS 129
+ + I + Q G + Q+ HAGR SN + G+
Sbjct: 86 PYGKLFEYGFNIDHDACIPGLTNXASTXKQHGSLAIIQLAHAGRFSNQAILNFGKV---- 141
Query: 130 TSKGVTPGVDGLDWSPPRPLSI----EEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYL 185
G +P SP + I E+I I+ +R A AI+AGFDGVEI A L
Sbjct: 142 --YGPSPXTL---HSPIEHVVIAXSHEKINSIIQQYRDATLRAIKAGFDGVEISIAQRLL 196
Query: 186 IDQFMKDQVNDRTDEYGG-SLENRCRFALEVVEAVVREIGAER-----VGMRLSP 234
I F N RTD YG SL+NR R LEV AV I E +G R +P
Sbjct: 197 IQTFFSTFSNRRTDHYGADSLKNRARLCLEVXRAVQEVIDKEAPDNFILGFRATP 251
>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
pdb|1VC4|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
Length = 254
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 34/133 (25%)
Query: 202 GGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFK 261
G LE R LE A+V E+ ER E A+++ E LG+ N
Sbjct: 144 GAYLEEARRLGLE---ALV-EVHTER---------ELEIALEAGAEVLGI------NNRD 184
Query: 262 LLYLHV---IEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDL 318
L LH+ PR+ +L K R F G +A GYSR E KA+ + D
Sbjct: 185 LATLHINLETAPRLGRLARK-----------RGFGGVLVAESGYSRKEELKALEGLF-DA 232
Query: 319 VAFGRLFLANPDL 331
V G + PDL
Sbjct: 233 VLIGTSLMRAPDL 245
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 136 PGVDGLDWSPPRPLSIEEIPKIVND-FRLAARNAIEAGFDGVEI 178
PG +G P + LS+EE+ K+V D F A I+ G DG+EI
Sbjct: 181 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVG-DGLEI 223
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|1 Chain 1, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|L Chain L, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Z Chain Z, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|L Chain L, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|S Chain S, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|L Chain L, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Z Chain Z, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|L Chain L, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Z Chain Z, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|L Chain L, Proteasome Inhibition By Fellutamide B
pdb|3D29|Z Chain Z, Proteasome Inhibition By Fellutamide B
pdb|3E47|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|L Chain L, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Z Chain Z, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|M Chain M, Proteasome Activator Complex
pdb|1VSY|1 Chain 1, Proteasome Activator Complex
pdb|3L5Q|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|3 Chain 3, Proteasome Activator Complex
pdb|3MG4|L Chain L, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Z Chain Z, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|L Chain L, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Z Chain Z, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|L Chain L, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Z Chain Z, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|L Chain L, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Z Chain Z, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|L Chain L, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Z Chain Z, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|L Chain L, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Z Chain Z, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|M Chain M, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|L Chain L, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Z Chain Z, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|L Chain L, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Z Chain Z, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 222
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 136 PGVDGLDWSPPRPLSIEEIPKIVND-FRLAARNAIEAGFDGVEI 178
PG +G P + LS+EE+ K+V D F A I+ G DG+EI
Sbjct: 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVG-DGLEI 204
>pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 910
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 191 KDQVNDRT-DEYG-GSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEA 248
+DQV + D YG ++ F +AV+R++G + PY P
Sbjct: 411 RDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGR----VLGHPYGFVDRISKLIPPD 466
Query: 249 LGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYS 303
G+ +AKA EP++ ++ + E ++L+ M R EG AG ++
Sbjct: 467 PGMTLAKAFEA---------EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 512
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,504,774
Number of Sequences: 62578
Number of extensions: 496140
Number of successful extensions: 1311
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 80
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)