Query 017733
Match_columns 367
No_of_seqs 156 out of 1341
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02411 12-oxophytodienoate r 100.0 2.6E-89 5.6E-94 671.3 39.5 359 8-366 7-386 (391)
2 COG1902 NemA NADH:flavin oxido 100.0 7.1E-88 1.5E-92 650.2 36.8 348 9-365 2-359 (363)
3 PRK10605 N-ethylmaleimide redu 100.0 3.6E-87 7.9E-92 650.4 38.5 350 11-364 1-362 (362)
4 cd02933 OYE_like_FMN Old yello 100.0 2.8E-83 6E-88 618.3 37.5 333 12-346 1-338 (338)
5 PF00724 Oxidored_FMN: NADH:fl 100.0 3.5E-83 7.5E-88 620.1 25.7 325 12-341 1-340 (341)
6 cd04747 OYE_like_5_FMN Old yel 100.0 3.2E-81 7E-86 606.0 36.2 330 13-348 1-356 (361)
7 cd04734 OYE_like_3_FMN Old yel 100.0 1.1E-80 2.3E-85 602.2 36.5 324 13-346 1-341 (343)
8 PRK13523 NADPH dehydrogenase N 100.0 1.4E-80 2.9E-85 598.6 34.8 317 11-341 1-324 (337)
9 cd04733 OYE_like_2_FMN Old yel 100.0 2.9E-80 6.3E-85 599.5 35.1 319 13-338 1-338 (338)
10 cd04735 OYE_like_4_FMN Old yel 100.0 1.2E-79 2.5E-84 597.8 34.1 320 13-341 1-332 (353)
11 cd02931 ER_like_FMN Enoate red 100.0 1.3E-78 2.9E-83 595.1 36.5 330 13-347 1-362 (382)
12 cd02929 TMADH_HD_FMN Trimethyl 100.0 2.1E-78 4.6E-83 591.4 35.4 334 10-351 5-350 (370)
13 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 2.7E-78 5.9E-83 588.7 35.8 323 13-349 1-335 (353)
14 cd02932 OYE_YqiM_FMN Old yello 100.0 4.3E-77 9.3E-82 577.2 35.4 317 13-337 1-335 (336)
15 cd02803 OYE_like_FMN_family Ol 100.0 5.2E-77 1.1E-81 575.2 34.0 315 14-338 1-327 (327)
16 PRK08255 salicylyl-CoA 5-hydro 100.0 3.8E-74 8.3E-79 609.3 37.2 326 8-341 394-736 (765)
17 KOG0134 NADH:flavin oxidoreduc 100.0 2.7E-55 5.8E-60 417.5 15.2 351 11-366 7-392 (400)
18 TIGR00737 nifR3_yhdG putative 100.0 1.5E-31 3.2E-36 257.4 21.9 235 19-337 1-237 (319)
19 cd02801 DUS_like_FMN Dihydrour 100.0 7.8E-31 1.7E-35 241.0 18.8 162 159-338 67-229 (231)
20 PRK10550 tRNA-dihydrouridine s 100.0 3.4E-30 7.3E-35 245.9 23.0 162 159-339 75-241 (312)
21 PRK11815 tRNA-dihydrouridine s 100.0 1.9E-28 4.2E-33 236.4 21.5 230 23-337 8-248 (333)
22 PRK10415 tRNA-dihydrouridine s 100.0 1.1E-27 2.4E-32 230.1 21.6 237 17-337 1-239 (321)
23 TIGR01037 pyrD_sub1_fam dihydr 100.0 6.9E-27 1.5E-31 223.2 23.7 245 16-339 2-280 (300)
24 COG0042 tRNA-dihydrouridine sy 99.9 1.9E-26 4.1E-31 221.0 20.9 238 16-335 1-241 (323)
25 cd04740 DHOD_1B_like Dihydroor 99.9 1.3E-25 2.8E-30 214.1 25.8 244 17-339 2-277 (296)
26 TIGR00742 yjbN tRNA dihydrouri 99.9 4.2E-26 9E-31 218.2 22.1 227 26-337 1-238 (318)
27 PRK07259 dihydroorotate dehydr 99.9 1.5E-24 3.2E-29 207.2 24.2 242 16-339 3-280 (301)
28 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 1.9E-22 4E-27 191.7 24.5 242 18-338 2-289 (289)
29 PF01207 Dus: Dihydrouridine s 99.9 2.8E-23 6E-28 198.7 11.7 165 159-340 66-234 (309)
30 cd02911 arch_FMN Archeal FMN-b 99.9 1E-20 2.2E-25 173.8 18.3 225 27-336 1-232 (233)
31 PRK05286 dihydroorotate dehydr 99.9 3.3E-20 7.2E-25 180.0 21.1 246 16-338 50-335 (344)
32 cd04739 DHOD_like Dihydroorota 99.8 2.1E-19 4.6E-24 173.1 23.6 241 16-338 3-283 (325)
33 KOG2335 tRNA-dihydrouridine sy 99.8 3.1E-20 6.6E-25 174.9 16.3 156 159-334 86-245 (358)
34 cd04738 DHOD_2_like Dihydrooro 99.8 2.7E-19 5.9E-24 172.7 22.9 248 16-338 40-326 (327)
35 cd02940 DHPD_FMN Dihydropyrimi 99.8 4.4E-19 9.5E-24 169.2 23.9 248 16-338 3-298 (299)
36 PRK07565 dihydroorotate dehydr 99.8 1.7E-18 3.6E-23 167.7 22.8 241 16-338 4-285 (334)
37 TIGR00736 nifR3_rel_arch TIM-b 99.8 3.6E-18 7.8E-23 155.7 20.0 205 49-328 8-226 (231)
38 cd04741 DHOD_1A_like Dihydroor 99.8 1E-16 2.2E-21 152.5 26.0 241 18-338 2-289 (294)
39 PRK08318 dihydropyrimidine deh 99.8 3.8E-17 8.1E-22 163.1 22.8 246 16-338 5-299 (420)
40 TIGR01036 pyrD_sub2 dihydrooro 99.7 3.5E-15 7.7E-20 144.1 21.7 155 158-338 153-334 (335)
41 PLN02495 oxidoreductase, actin 99.6 4.9E-14 1.1E-18 137.6 23.9 255 7-339 5-317 (385)
42 PRK02506 dihydroorotate dehydr 99.6 2.6E-14 5.6E-19 136.9 21.2 156 159-339 105-288 (310)
43 PF01180 DHO_dh: Dihydroorotat 99.6 7.8E-14 1.7E-18 133.0 17.1 157 156-338 109-290 (295)
44 COG0167 PyrD Dihydroorotate de 99.6 2.5E-13 5.4E-18 128.4 18.8 153 159-338 109-287 (310)
45 KOG2333 Uncharacterized conser 99.5 1.1E-13 2.4E-18 134.0 15.3 244 14-344 253-507 (614)
46 cd04722 TIM_phosphate_binding 99.5 1.7E-12 3.6E-17 114.9 20.9 185 45-323 12-200 (200)
47 PLN02826 dihydroorotate dehydr 99.5 2.6E-12 5.7E-17 126.7 22.5 157 155-338 200-387 (409)
48 cd02809 alpha_hydroxyacid_oxid 99.4 5.4E-11 1.2E-15 113.6 19.8 131 160-329 130-263 (299)
49 cd03316 MR_like Mandelate race 99.3 2.2E-11 4.8E-16 119.1 15.2 128 158-321 140-269 (357)
50 TIGR02151 IPP_isom_2 isopenten 99.3 2.7E-10 5.9E-15 110.3 20.8 140 171-338 140-304 (333)
51 TIGR01304 IMP_DH_rel_2 IMP deh 99.1 1.5E-09 3.2E-14 105.8 15.6 116 162-325 102-219 (369)
52 PRK05437 isopentenyl pyrophosp 99.0 3.9E-08 8.4E-13 95.9 20.4 131 170-328 146-296 (352)
53 cd02811 IDI-2_FMN Isopentenyl- 99.0 6.2E-08 1.3E-12 93.7 20.2 131 170-328 138-290 (326)
54 cd00381 IMPDH IMPDH: The catal 98.9 2.5E-07 5.4E-12 89.4 20.5 132 161-332 95-236 (325)
55 cd04730 NPD_like 2-Nitropropan 98.8 6E-07 1.3E-11 82.6 19.5 77 254-331 115-194 (236)
56 cd03315 MLE_like Muconate lact 98.8 2E-07 4.4E-12 87.5 15.6 121 159-321 87-209 (265)
57 cd03319 L-Ala-DL-Glu_epimerase 98.8 1.7E-07 3.7E-12 90.2 15.4 121 159-322 136-258 (316)
58 cd03329 MR_like_4 Mandelate ra 98.8 2.2E-07 4.9E-12 91.3 15.6 123 159-321 145-270 (368)
59 PRK13585 1-(5-phosphoribosyl)- 98.7 4.2E-07 9.1E-12 84.0 14.9 145 163-337 89-237 (241)
60 PRK14024 phosphoribosyl isomer 98.7 3.3E-07 7.2E-12 84.9 13.9 145 163-336 88-236 (241)
61 KOG2334 tRNA-dihydrouridine sy 98.7 5.6E-08 1.2E-12 93.6 8.5 145 170-333 104-253 (477)
62 PRK05458 guanosine 5'-monophos 98.7 7.2E-07 1.6E-11 85.6 15.8 129 161-330 98-238 (326)
63 PRK04180 pyridoxal biosynthesi 98.7 2E-07 4.3E-12 86.7 11.3 152 162-330 27-242 (293)
64 PRK01130 N-acetylmannosamine-6 98.6 6.1E-07 1.3E-11 81.9 13.7 134 163-336 79-215 (221)
65 PRK08649 inosine 5-monophospha 98.6 1.2E-06 2.5E-11 85.8 16.1 100 209-325 117-218 (368)
66 cd04732 HisA HisA. Phosphorib 98.6 1.1E-06 2.4E-11 80.7 15.0 83 250-334 148-231 (234)
67 cd02922 FCB2_FMN Flavocytochro 98.6 1.2E-05 2.5E-10 78.2 21.3 152 162-330 134-308 (344)
68 cd04731 HisF The cyclase subun 98.6 8.8E-07 1.9E-11 82.1 12.9 81 248-329 149-230 (243)
69 cd04731 HisF The cyclase subun 98.6 3.3E-07 7.1E-12 84.9 9.5 87 250-338 29-116 (243)
70 cd03328 MR_like_3 Mandelate ra 98.6 1.5E-06 3.3E-11 84.9 14.6 121 159-321 140-264 (352)
71 cd04737 LOX_like_FMN L-Lactate 98.5 2.6E-06 5.7E-11 82.8 15.2 102 211-329 208-312 (351)
72 PRK00748 1-(5-phosphoribosyl)- 98.5 1.5E-06 3.3E-11 79.9 13.0 78 250-328 148-226 (233)
73 cd03327 MR_like_2 Mandelate ra 98.5 2.9E-06 6.4E-11 82.6 15.5 127 159-320 122-250 (341)
74 TIGR03572 WbuZ glycosyl amidat 98.5 2.6E-06 5.6E-11 78.4 13.7 75 250-325 155-230 (232)
75 PRK02083 imidazole glycerol ph 98.5 7.6E-07 1.7E-11 83.0 9.9 86 251-338 33-119 (253)
76 COG4948 L-alanine-DL-glutamate 98.5 2.9E-06 6.3E-11 83.6 14.5 122 159-321 145-268 (372)
77 cd03321 mandelate_racemase Man 98.5 1.4E-06 3.1E-11 85.2 12.1 122 159-321 143-266 (355)
78 cd04729 NanE N-acetylmannosami 98.5 1.8E-06 3.8E-11 78.8 11.9 132 162-332 82-216 (219)
79 cd04732 HisA HisA. Phosphorib 98.5 8.6E-07 1.9E-11 81.5 9.7 87 250-338 31-118 (234)
80 cd03326 MR_like_1 Mandelate ra 98.5 2.8E-06 6.2E-11 84.0 13.7 121 159-320 162-288 (385)
81 PRK01033 imidazole glycerol ph 98.4 3.8E-06 8.2E-11 78.6 13.3 81 250-332 154-236 (258)
82 TIGR00007 phosphoribosylformim 98.4 4.1E-06 8.8E-11 76.9 13.2 77 250-328 147-224 (230)
83 TIGR00735 hisF imidazoleglycer 98.4 5.7E-06 1.2E-10 77.3 14.3 139 162-328 86-235 (254)
84 TIGR01306 GMP_reduct_2 guanosi 98.4 1.1E-05 2.3E-10 77.3 15.8 125 165-329 99-234 (321)
85 cd03324 rTSbeta_L-fuconate_deh 98.4 7.8E-06 1.7E-10 81.6 15.3 120 159-320 198-322 (415)
86 TIGR00735 hisF imidazoleglycer 98.4 1.8E-06 3.9E-11 80.6 10.0 86 251-338 33-119 (254)
87 cd00945 Aldolase_Class_I Class 98.4 1.8E-05 4E-10 70.2 15.8 133 159-322 65-201 (201)
88 TIGR02708 L_lactate_ox L-lacta 98.4 9.8E-06 2.1E-10 79.1 14.4 101 211-328 215-318 (367)
89 PRK06806 fructose-bisphosphate 98.3 0.00016 3.5E-09 68.4 21.7 195 87-329 28-237 (281)
90 PRK15072 bifunctional D-altron 98.3 2.1E-05 4.5E-10 78.4 16.4 144 160-321 130-286 (404)
91 cd02808 GltS_FMN Glutamate syn 98.3 1.5E-05 3.2E-10 79.0 15.2 105 210-327 199-319 (392)
92 PRK07695 transcriptional regul 98.3 2.7E-05 6E-10 70.0 15.4 104 216-336 86-191 (201)
93 cd03322 rpsA The starvation se 98.3 1.3E-05 2.8E-10 78.7 14.3 114 159-321 128-243 (361)
94 PRK13125 trpA tryptophan synth 98.3 2.7E-05 5.8E-10 72.3 15.6 153 159-327 18-219 (244)
95 cd04727 pdxS PdxS is a subunit 98.3 4.4E-05 9.5E-10 71.0 16.5 140 145-329 48-232 (283)
96 PF00478 IMPDH: IMP dehydrogen 98.3 3.7E-05 8E-10 74.5 16.7 129 162-330 110-248 (352)
97 PRK14017 galactonate dehydrata 98.3 2.3E-05 5.1E-10 77.5 15.8 130 159-321 126-257 (382)
98 PRK07315 fructose-bisphosphate 98.3 0.00014 3E-09 69.2 20.0 197 87-329 28-239 (293)
99 cd04728 ThiG Thiazole synthase 98.3 7.7E-05 1.7E-09 68.2 16.9 134 159-331 76-215 (248)
100 cd03325 D-galactonate_dehydrat 98.3 2.6E-05 5.7E-10 76.3 15.0 128 161-321 127-256 (352)
101 TIGR01302 IMP_dehydrog inosine 98.2 2.6E-05 5.7E-10 78.7 15.2 136 161-336 225-370 (450)
102 PLN02535 glycolate oxidase 98.2 2.3E-05 5.1E-10 76.4 13.6 104 210-330 209-315 (364)
103 PRK06843 inosine 5-monophospha 98.2 3E-05 6.6E-10 76.4 14.4 135 160-334 153-297 (404)
104 PRK02714 O-succinylbenzoate sy 98.2 3E-05 6.5E-10 74.9 14.1 121 160-321 121-246 (320)
105 TIGR03151 enACPred_II putative 98.2 4.9E-05 1.1E-09 72.9 15.3 120 163-330 78-198 (307)
106 PTZ00314 inosine-5'-monophosph 98.2 2.3E-05 5.1E-10 79.8 13.8 134 161-334 242-385 (495)
107 TIGR01163 rpe ribulose-phospha 98.2 5.7E-05 1.2E-09 68.0 14.8 52 284-336 151-207 (210)
108 PRK06512 thiamine-phosphate py 98.2 0.00014 3.1E-09 66.4 17.3 104 216-336 100-206 (221)
109 TIGR01769 GGGP geranylgeranylg 98.2 0.00012 2.6E-09 65.9 16.4 74 245-322 131-205 (205)
110 PRK00507 deoxyribose-phosphate 98.2 4.9E-05 1.1E-09 69.3 14.0 129 162-325 77-211 (221)
111 TIGR02534 mucon_cyclo muconate 98.2 3.6E-05 7.8E-10 75.8 13.7 112 169-321 154-267 (368)
112 PRK15440 L-rhamnonate dehydrat 98.1 4.5E-05 9.8E-10 75.6 14.4 117 169-320 169-289 (394)
113 PF04131 NanE: Putative N-acet 98.1 6.8E-05 1.5E-09 65.9 13.6 129 162-334 54-184 (192)
114 PRK06801 hypothetical protein; 98.1 0.00053 1.2E-08 64.9 20.5 191 87-327 28-238 (286)
115 cd03318 MLE Muconate Lactonizi 98.1 4.2E-05 9.2E-10 75.1 13.6 119 162-321 147-268 (365)
116 cd03323 D-glucarate_dehydratas 98.1 5E-05 1.1E-09 75.4 13.5 117 160-320 171-289 (395)
117 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 4.4E-05 9.4E-10 77.3 13.1 144 150-334 215-369 (475)
118 TIGR00262 trpA tryptophan synt 98.1 0.00014 3.1E-09 67.9 15.6 154 159-327 24-232 (256)
119 cd00429 RPE Ribulose-5-phospha 98.1 0.00017 3.6E-09 64.9 15.6 52 284-336 152-208 (211)
120 TIGR03247 glucar-dehydr glucar 98.1 5.8E-05 1.2E-09 75.9 13.7 118 160-320 183-307 (441)
121 cd04736 MDH_FMN Mandelate dehy 98.1 5.8E-05 1.3E-09 73.5 13.2 100 210-326 222-322 (361)
122 PRK07807 inosine 5-monophospha 98.1 8.3E-05 1.8E-09 75.4 14.8 147 149-335 216-372 (479)
123 PLN02274 inosine-5'-monophosph 98.1 7.2E-05 1.6E-09 76.4 14.4 140 161-340 249-400 (505)
124 TIGR03572 WbuZ glycosyl amidat 98.1 2.2E-05 4.8E-10 72.1 9.7 87 250-338 32-119 (232)
125 cd04724 Tryptophan_synthase_al 98.1 0.00014 3.1E-09 67.4 15.0 153 159-326 14-219 (242)
126 cd03320 OSBS o-Succinylbenzoat 98.1 4.9E-05 1.1E-09 71.3 11.8 116 163-321 88-205 (263)
127 PRK14024 phosphoribosyl isomer 98.0 2.6E-05 5.7E-10 72.2 9.3 85 251-338 35-120 (241)
128 TIGR01859 fruc_bis_ald_ fructo 98.0 0.001 2.2E-08 63.0 20.0 139 163-327 88-235 (282)
129 cd04726 KGPDC_HPS 3-Keto-L-gul 98.0 0.00026 5.5E-09 63.5 15.2 130 165-336 70-200 (202)
130 PF04481 DUF561: Protein of un 98.0 0.00014 3.1E-09 64.8 12.8 133 168-326 77-218 (242)
131 PRK00748 1-(5-phosphoribosyl)- 98.0 3.4E-05 7.3E-10 70.9 9.3 87 250-338 32-119 (233)
132 PRK07107 inosine 5-monophospha 98.0 0.00011 2.4E-09 74.9 13.9 134 160-332 242-391 (502)
133 cd03317 NAAAR N-acylamino acid 98.0 0.0002 4.4E-09 70.0 15.2 117 159-321 139-257 (354)
134 PLN02334 ribulose-phosphate 3- 98.0 0.00037 8E-09 64.0 15.6 129 166-336 82-216 (229)
135 TIGR01949 AroFGH_arch predicte 98.0 0.00033 7.2E-09 65.5 15.5 140 161-335 92-240 (258)
136 PLN02591 tryptophan synthase 98.0 0.00032 6.9E-09 65.2 15.2 154 159-327 16-223 (250)
137 PRK02083 imidazole glycerol ph 97.9 0.00021 4.6E-09 66.6 13.9 78 250-328 155-233 (253)
138 TIGR00343 pyridoxal 5'-phospha 97.9 0.00047 1E-08 64.3 15.7 142 145-331 50-239 (287)
139 cd00959 DeoC 2-deoxyribose-5-p 97.9 0.00031 6.8E-09 63.3 14.3 128 162-321 72-202 (203)
140 PF01645 Glu_synthase: Conserv 97.9 0.00014 3.1E-09 70.9 12.7 106 209-327 187-308 (368)
141 PRK05096 guanosine 5'-monophos 97.9 0.00022 4.7E-09 68.2 13.5 136 160-335 109-255 (346)
142 TIGR00126 deoC deoxyribose-pho 97.9 0.00025 5.4E-09 64.2 13.2 131 162-324 73-206 (211)
143 PRK00208 thiG thiazole synthas 97.9 0.00052 1.1E-08 62.9 15.1 134 159-331 76-215 (250)
144 TIGR03128 RuMP_HxlA 3-hexulose 97.9 0.00044 9.6E-09 62.2 14.8 129 164-334 68-198 (206)
145 PF01070 FMN_dh: FMN-dependent 97.9 0.00013 2.9E-09 71.2 12.1 102 209-327 210-314 (356)
146 TIGR01928 menC_lowGC/arch o-su 97.9 0.00036 7.8E-09 67.5 14.7 118 159-321 134-252 (324)
147 PLN02979 glycolate oxidase 97.9 0.00023 4.9E-09 69.2 13.1 99 212-327 211-312 (366)
148 PRK13585 1-(5-phosphoribosyl)- 97.9 7.4E-05 1.6E-09 69.0 9.3 86 251-338 35-121 (241)
149 COG0352 ThiE Thiamine monophos 97.9 0.00026 5.6E-09 64.0 12.4 104 216-337 94-201 (211)
150 PRK03512 thiamine-phosphate py 97.9 0.0011 2.4E-08 60.2 16.6 79 256-336 117-200 (211)
151 TIGR01927 menC_gamma/gm+ o-suc 97.9 0.00038 8.3E-09 66.8 14.3 109 170-321 122-235 (307)
152 PRK02615 thiamine-phosphate py 97.9 0.0012 2.6E-08 64.2 17.7 101 216-333 230-333 (347)
153 COG0107 HisF Imidazoleglycerol 97.9 9.1E-05 2E-09 66.6 9.1 86 251-338 33-119 (256)
154 PRK13111 trpA tryptophan synth 97.8 0.00059 1.3E-08 63.8 15.0 154 159-327 26-233 (258)
155 CHL00200 trpA tryptophan synth 97.8 0.00052 1.1E-08 64.3 14.6 153 159-326 29-235 (263)
156 PRK08185 hypothetical protein; 97.8 0.0028 6E-08 60.0 19.5 189 87-325 23-231 (283)
157 PRK07028 bifunctional hexulose 97.8 0.00044 9.5E-09 69.5 15.1 127 164-332 73-200 (430)
158 cd00564 TMP_TenI Thiamine mono 97.8 0.0015 3.3E-08 57.6 16.9 81 255-336 109-192 (196)
159 TIGR02129 hisA_euk phosphoribo 97.8 0.0001 2.3E-09 68.2 9.5 80 251-338 41-124 (253)
160 cd00331 IGPS Indole-3-glycerol 97.8 0.0011 2.4E-08 60.3 16.1 127 164-336 86-215 (217)
161 PRK05581 ribulose-phosphate 3- 97.8 0.00081 1.8E-08 61.1 15.2 40 296-336 173-212 (220)
162 PRK11197 lldD L-lactate dehydr 97.8 0.00021 4.5E-09 70.2 11.7 97 214-327 235-334 (381)
163 cd00958 DhnA Class I fructose- 97.8 0.00063 1.4E-08 62.6 14.4 143 160-336 77-228 (235)
164 PRK12738 kbaY tagatose-bisphos 97.8 0.0023 4.9E-08 60.6 18.3 190 87-325 28-235 (286)
165 PRK07709 fructose-bisphosphate 97.8 0.0032 7E-08 59.6 19.2 136 164-325 92-236 (285)
166 PRK07226 fructose-bisphosphate 97.8 0.00056 1.2E-08 64.3 14.1 140 160-333 94-242 (267)
167 PF02581 TMP-TENI: Thiamine mo 97.8 0.00087 1.9E-08 59.2 14.5 130 148-325 35-180 (180)
168 PRK02901 O-succinylbenzoate sy 97.8 0.00076 1.6E-08 65.3 15.3 110 171-321 101-213 (327)
169 PRK09195 gatY tagatose-bisphos 97.8 0.0016 3.4E-08 61.7 16.9 190 87-326 28-236 (284)
170 PF00977 His_biosynth: Histidi 97.8 0.0001 2.2E-09 67.8 8.6 85 252-338 33-118 (229)
171 TIGR01305 GMP_reduct_1 guanosi 97.8 0.00089 1.9E-08 64.1 15.0 133 160-333 108-252 (343)
172 PLN02446 (5-phosphoribosyl)-5- 97.8 0.00015 3.3E-09 67.4 9.5 82 251-338 46-131 (262)
173 PRK13587 1-(5-phosphoribosyl)- 97.8 0.00014 3E-09 67.1 9.2 85 252-338 35-121 (234)
174 PRK05567 inosine 5'-monophosph 97.8 0.00046 1E-08 70.4 13.8 131 162-332 230-370 (486)
175 PRK13586 1-(5-phosphoribosyl)- 97.7 0.00025 5.5E-09 65.2 10.5 85 251-338 33-118 (232)
176 PRK08610 fructose-bisphosphate 97.7 0.0035 7.7E-08 59.3 18.3 194 87-324 28-235 (286)
177 TIGR01858 tag_bisphos_ald clas 97.7 0.0033 7.2E-08 59.4 18.1 190 87-326 26-234 (282)
178 PRK01033 imidazole glycerol ph 97.7 0.00023 4.9E-09 66.6 9.6 87 250-338 32-119 (258)
179 PF00290 Trp_syntA: Tryptophan 97.6 0.0017 3.7E-08 60.6 14.4 154 159-327 24-231 (259)
180 CHL00162 thiG thiamin biosynth 97.6 0.0017 3.7E-08 59.5 13.7 105 213-333 124-229 (267)
181 COG0106 HisA Phosphoribosylfor 97.6 0.00026 5.5E-09 64.7 8.3 87 251-339 34-121 (241)
182 PRK07998 gatY putative fructos 97.6 0.013 2.9E-07 55.3 20.2 191 87-327 28-234 (283)
183 PRK14114 1-(5-phosphoribosyl)- 97.6 0.00034 7.4E-09 64.7 9.2 84 251-337 33-117 (241)
184 PRK04128 1-(5-phosphoribosyl)- 97.6 0.0003 6.6E-09 64.6 8.7 83 251-337 33-116 (228)
185 PRK13587 1-(5-phosphoribosyl)- 97.6 0.0024 5.2E-08 58.9 14.6 136 162-327 88-226 (234)
186 cd00308 enolase_like Enolase-s 97.6 0.00076 1.7E-08 61.8 11.1 92 213-321 81-174 (229)
187 PRK08649 inosine 5-monophospha 97.6 0.0012 2.5E-08 64.9 12.8 139 160-334 142-297 (368)
188 TIGR00167 cbbA ketose-bisphosp 97.5 0.0097 2.1E-07 56.5 18.4 137 163-325 91-239 (288)
189 cd02812 PcrB_like PcrB_like pr 97.5 0.00065 1.4E-08 61.7 9.9 84 246-336 133-218 (219)
190 TIGR00693 thiE thiamine-phosph 97.5 0.0092 2E-07 53.2 17.2 79 256-335 111-193 (196)
191 COG0269 SgbH 3-hexulose-6-phos 97.5 0.0019 4.1E-08 58.0 12.5 134 162-335 70-205 (217)
192 COG0106 HisA Phosphoribosylfor 97.5 0.0037 8.1E-08 57.2 14.5 138 162-329 87-228 (241)
193 PF03437 BtpA: BtpA family; I 97.5 0.0034 7.3E-08 58.4 14.5 155 153-328 23-233 (254)
194 PTZ00170 D-ribulose-5-phosphat 97.5 0.0033 7.2E-08 57.7 14.5 141 160-334 20-213 (228)
195 TIGR01919 hisA-trpF 1-(5-phosp 97.5 0.00055 1.2E-08 63.5 9.4 84 252-338 35-119 (243)
196 cd00405 PRAI Phosphoribosylant 97.5 0.0015 3.2E-08 58.9 11.8 121 166-331 67-190 (203)
197 COG2022 ThiG Uncharacterized e 97.5 0.01 2.2E-07 53.7 16.7 181 88-327 27-216 (262)
198 TIGR01304 IMP_DH_rel_2 IMP deh 97.5 0.0022 4.7E-08 62.9 13.8 133 160-329 143-291 (369)
199 PRK12857 fructose-1,6-bisphosp 97.5 0.013 2.8E-07 55.5 18.5 190 87-326 28-236 (284)
200 PRK00278 trpC indole-3-glycero 97.5 0.0043 9.4E-08 58.1 15.2 127 164-336 125-254 (260)
201 PRK12290 thiE thiamine-phospha 97.5 0.0051 1.1E-07 61.1 16.1 77 257-335 316-405 (437)
202 cd03332 LMO_FMN L-Lactate 2-mo 97.5 0.0011 2.4E-08 65.2 11.4 99 211-326 240-341 (383)
203 PRK12737 gatY tagatose-bisphos 97.5 0.011 2.4E-07 56.0 17.7 190 87-326 28-236 (284)
204 PRK05835 fructose-bisphosphate 97.5 0.0084 1.8E-07 57.2 16.7 190 87-325 27-258 (307)
205 PLN02898 HMP-P kinase/thiamin- 97.4 0.0067 1.4E-07 62.3 17.2 79 257-336 406-489 (502)
206 PRK13307 bifunctional formalde 97.4 0.0058 1.3E-07 60.3 15.9 124 165-332 243-368 (391)
207 PRK09140 2-dehydro-3-deoxy-6-p 97.4 0.01 2.2E-07 53.6 16.3 63 258-328 121-185 (206)
208 TIGR00007 phosphoribosylformim 97.4 0.00097 2.1E-08 61.1 9.9 86 251-338 31-117 (230)
209 PRK08999 hypothetical protein; 97.4 0.0021 4.6E-08 61.7 12.3 69 256-325 241-311 (312)
210 cd04723 HisA_HisF Phosphoribos 97.4 0.00074 1.6E-08 62.2 8.6 84 251-338 38-122 (233)
211 TIGR01768 GGGP-family geranylg 97.4 0.0011 2.3E-08 60.4 9.4 81 250-336 140-222 (223)
212 PRK09517 multifunctional thiam 97.4 0.0056 1.2E-07 65.9 16.4 104 216-332 91-204 (755)
213 PRK14114 1-(5-phosphoribosyl)- 97.4 0.0053 1.2E-07 56.8 13.8 138 162-329 85-230 (241)
214 COG0159 TrpA Tryptophan syntha 97.3 0.012 2.7E-07 54.7 15.9 153 159-326 31-237 (265)
215 PLN02493 probable peroxisomal 97.3 0.0019 4.1E-08 63.2 11.1 99 212-327 212-313 (367)
216 PRK08883 ribulose-phosphate 3- 97.3 0.0069 1.5E-07 55.3 14.1 139 146-335 63-208 (220)
217 PRK09197 fructose-bisphosphate 97.3 0.013 2.8E-07 56.7 16.5 209 87-325 31-282 (350)
218 cd00452 KDPG_aldolase KDPG and 97.3 0.0099 2.1E-07 52.9 14.9 61 258-326 114-175 (190)
219 PF00977 His_biosynth: Histidi 97.3 0.0019 4.2E-08 59.3 10.5 136 162-327 85-225 (229)
220 PF03060 NMO: Nitronate monoox 97.3 0.0095 2.1E-07 57.8 15.3 123 161-330 102-227 (330)
221 COG0274 DeoC Deoxyribose-phosp 97.3 0.0048 1E-07 55.8 12.1 133 162-325 80-215 (228)
222 PRK07084 fructose-bisphosphate 97.3 0.027 5.9E-07 54.0 17.9 136 164-325 100-271 (321)
223 PF01791 DeoC: DeoC/LacD famil 97.3 0.0074 1.6E-07 55.6 13.8 141 162-326 79-234 (236)
224 cd00947 TBP_aldolase_IIB Tagat 97.3 0.042 9E-07 51.9 18.7 191 87-326 23-230 (276)
225 PRK06552 keto-hydroxyglutarate 97.2 0.017 3.6E-07 52.5 15.5 61 259-327 127-188 (213)
226 COG0036 Rpe Pentose-5-phosphat 97.2 0.0095 2.1E-07 53.8 13.6 143 160-337 17-212 (220)
227 PRK13399 fructose-1,6-bisphosp 97.2 0.034 7.5E-07 53.9 18.3 199 87-323 28-278 (347)
228 TIGR02129 hisA_euk phosphoribo 97.2 0.0052 1.1E-07 57.0 12.0 139 163-327 88-237 (253)
229 TIGR01521 FruBisAldo_II_B fruc 97.2 0.035 7.6E-07 53.8 18.0 202 87-324 26-277 (347)
230 PRK00043 thiE thiamine-phospha 97.2 0.0026 5.5E-08 57.3 9.8 78 257-335 120-201 (212)
231 COG0107 HisF Imidazoleglycerol 97.2 0.0087 1.9E-07 54.1 12.7 145 164-336 88-243 (256)
232 TIGR01919 hisA-trpF 1-(5-phosp 97.2 0.012 2.6E-07 54.6 14.2 140 162-329 86-232 (243)
233 PRK09196 fructose-1,6-bisphosp 97.2 0.039 8.6E-07 53.5 18.1 200 87-325 28-280 (347)
234 PRK15129 L-Ala-D/L-Glu epimera 97.1 0.011 2.3E-07 57.2 14.1 72 159-266 131-202 (321)
235 PLN02617 imidazole glycerol ph 97.1 0.0022 4.9E-08 65.9 9.7 87 251-338 270-382 (538)
236 cd00377 ICL_PEPM Members of th 97.1 0.017 3.7E-07 53.5 14.7 142 159-326 84-230 (243)
237 cd04723 HisA_HisF Phosphoribos 97.1 0.017 3.7E-07 53.2 14.5 75 251-328 149-224 (233)
238 PF05690 ThiG: Thiazole biosyn 97.1 0.013 2.9E-07 53.2 13.2 117 209-331 75-213 (247)
239 PF01116 F_bP_aldolase: Fructo 97.1 0.023 5E-07 54.0 15.5 140 162-326 86-239 (287)
240 PLN02446 (5-phosphoribosyl)-5- 97.1 0.012 2.5E-07 54.9 13.1 139 163-325 95-241 (262)
241 TIGR00734 hisAF_rel hisA/hisF 97.0 0.0026 5.5E-08 58.2 8.2 80 252-336 40-122 (221)
242 COG1646 Predicted phosphate-bi 97.0 0.018 3.9E-07 52.2 13.3 50 287-337 184-235 (240)
243 PRK04169 geranylgeranylglycery 97.0 0.0051 1.1E-07 56.5 9.8 58 278-336 168-228 (232)
244 COG5016 Pyruvate/oxaloacetate 97.0 0.013 2.9E-07 57.0 12.9 127 156-321 98-230 (472)
245 PRK04302 triosephosphate isome 97.0 0.039 8.4E-07 50.4 15.6 80 256-336 129-216 (223)
246 KOG1436 Dihydroorotate dehydro 97.0 0.025 5.3E-07 53.5 14.2 162 148-338 189-377 (398)
247 TIGR00259 thylakoid_BtpA membr 97.0 0.051 1.1E-06 50.6 16.2 46 280-327 186-232 (257)
248 PLN02617 imidazole glycerol ph 96.9 0.016 3.4E-07 59.7 13.7 150 162-327 337-517 (538)
249 TIGR02317 prpB methylisocitrat 96.9 0.12 2.5E-06 49.1 18.6 141 159-327 88-234 (285)
250 PRK13586 1-(5-phosphoribosyl)- 96.9 0.03 6.6E-07 51.5 14.3 136 162-327 85-223 (232)
251 PLN02980 2-oxoglutarate decarb 96.9 0.0096 2.1E-07 69.3 13.1 114 159-314 1092-1212(1655)
252 cd01572 QPRTase Quinolinate ph 96.9 0.014 2.9E-07 55.0 11.9 105 195-326 146-258 (268)
253 cd01568 QPRTase_NadC Quinolina 96.9 0.03 6.4E-07 52.8 14.0 113 194-329 144-262 (269)
254 COG1304 idi Isopentenyl diphos 96.9 0.019 4E-07 56.2 13.0 70 257-327 235-307 (360)
255 PRK05105 O-succinylbenzoate sy 96.8 0.025 5.5E-07 54.6 13.6 104 171-319 127-234 (322)
256 COG3010 NanE Putative N-acetyl 96.8 0.028 6.1E-07 50.0 12.2 126 164-333 90-219 (229)
257 PRK08005 epimerase; Validated 96.8 0.084 1.8E-06 47.8 15.7 128 166-336 75-205 (210)
258 PRK05283 deoxyribose-phosphate 96.8 0.016 3.6E-07 53.8 11.3 127 162-320 86-222 (257)
259 TIGR00078 nadC nicotinate-nucl 96.7 0.022 4.8E-07 53.5 11.8 88 212-326 164-254 (265)
260 COG0191 Fba Fructose/tagatose 96.7 0.13 2.8E-06 48.4 16.6 188 86-316 27-229 (286)
261 cd00408 DHDPS-like Dihydrodipi 96.7 0.063 1.4E-06 50.6 15.1 145 160-337 19-171 (281)
262 PF01188 MR_MLE: Mandelate rac 96.7 0.016 3.5E-07 42.4 8.6 65 215-298 1-66 (67)
263 PRK08091 ribulose-phosphate 3- 96.7 0.12 2.6E-06 47.3 16.0 127 167-334 86-219 (228)
264 PRK08072 nicotinate-nucleotide 96.7 0.021 4.6E-07 53.9 11.5 88 212-326 174-264 (277)
265 PRK07455 keto-hydroxyglutarate 96.6 0.0072 1.6E-07 53.8 7.5 64 257-327 121-185 (187)
266 cd00946 FBP_aldolase_IIA Class 96.6 0.17 3.6E-06 49.2 17.3 150 153-325 104-278 (345)
267 TIGR02319 CPEP_Pphonmut carbox 96.6 0.3 6.5E-06 46.5 18.7 137 161-326 94-237 (294)
268 TIGR01182 eda Entner-Doudoroff 96.6 0.046 1E-06 49.2 12.2 46 282-328 136-182 (204)
269 PRK12858 tagatose 1,6-diphosph 96.5 0.082 1.8E-06 51.4 14.6 148 164-329 111-283 (340)
270 cd00945 Aldolase_Class_I Class 96.5 0.1 2.3E-06 45.8 14.3 141 159-338 13-168 (201)
271 PRK14057 epimerase; Provisiona 96.5 0.072 1.6E-06 49.5 13.2 141 146-335 80-234 (254)
272 PF00218 IGPS: Indole-3-glycer 96.5 0.034 7.4E-07 51.8 11.1 148 161-337 70-253 (254)
273 TIGR01520 FruBisAldo_II_A fruc 96.4 0.25 5.5E-06 48.0 17.0 120 204-325 147-290 (357)
274 TIGR00734 hisAF_rel hisA/hisF 96.4 0.023 4.9E-07 51.9 9.3 75 250-327 143-218 (221)
275 PRK08745 ribulose-phosphate 3- 96.4 0.19 4.2E-06 45.9 15.2 138 146-334 67-211 (223)
276 cd01573 modD_like ModD; Quinol 96.3 0.042 9.1E-07 51.8 11.0 94 213-329 171-265 (272)
277 PRK11320 prpB 2-methylisocitra 96.3 0.56 1.2E-05 44.7 18.4 140 159-326 93-238 (292)
278 PRK07428 nicotinate-nucleotide 96.3 0.054 1.2E-06 51.4 11.5 95 212-329 182-278 (288)
279 PRK05742 nicotinate-nucleotide 96.2 0.06 1.3E-06 50.8 11.6 89 214-329 178-268 (277)
280 TIGR01060 eno phosphopyruvate 96.2 0.053 1.1E-06 54.5 11.9 108 206-321 213-335 (425)
281 PF01884 PcrB: PcrB family; I 96.2 0.018 3.8E-07 52.7 7.6 75 251-331 145-220 (230)
282 PRK11750 gltB glutamate syntha 96.2 0.048 1E-06 61.5 12.4 113 196-327 973-1101(1485)
283 PF04131 NanE: Putative N-acet 96.2 0.074 1.6E-06 47.0 11.1 116 163-322 3-119 (192)
284 PF07745 Glyco_hydro_53: Glyco 96.2 0.6 1.3E-05 45.2 18.4 175 87-300 57-236 (332)
285 TIGR01740 pyrF orotidine 5'-ph 96.2 0.15 3.2E-06 46.3 13.5 139 153-336 60-210 (213)
286 TIGR01502 B_methylAsp_ase meth 96.2 0.15 3.3E-06 50.8 14.5 135 159-321 180-326 (408)
287 PRK13306 ulaD 3-keto-L-gulonat 96.1 0.068 1.5E-06 48.6 11.1 123 168-331 76-200 (216)
288 COG0069 GltB Glutamate synthas 96.1 0.049 1.1E-06 54.9 10.9 114 195-327 279-408 (485)
289 PRK04128 1-(5-phosphoribosyl)- 96.1 0.12 2.5E-06 47.5 12.7 36 292-328 181-217 (228)
290 cd00950 DHDPS Dihydrodipicolin 96.1 0.17 3.7E-06 47.9 14.1 125 160-314 22-154 (284)
291 KOG2550 IMP dehydrogenase/GMP 96.1 0.038 8.2E-07 54.0 9.3 128 165-332 256-393 (503)
292 PRK05718 keto-hydroxyglutarate 96.0 0.18 4E-06 45.7 13.3 48 282-331 143-191 (212)
293 COG0329 DapA Dihydrodipicolina 96.0 0.091 2E-06 50.2 11.9 125 159-314 25-158 (299)
294 PRK00230 orotidine 5'-phosphat 96.0 0.13 2.9E-06 47.2 12.5 131 163-336 71-221 (230)
295 PRK08227 autoinducer 2 aldolas 96.0 0.3 6.5E-06 45.8 14.9 130 164-332 99-236 (264)
296 COG2070 Dioxygenases related t 96.0 0.017 3.6E-07 56.2 6.7 77 252-329 138-220 (336)
297 PRK03170 dihydrodipicolinate s 96.0 0.28 6.1E-06 46.6 15.1 125 160-314 23-155 (292)
298 PRK13813 orotidine 5'-phosphat 96.0 0.23 5.1E-06 44.9 13.8 128 166-334 74-204 (215)
299 TIGR00674 dapA dihydrodipicoli 96.0 0.25 5.5E-06 46.8 14.6 131 160-321 20-157 (285)
300 PRK12581 oxaloacetate decarbox 96.0 0.62 1.3E-05 47.2 17.8 136 156-331 105-251 (468)
301 TIGR02320 PEP_mutase phosphoen 95.9 0.32 6.8E-06 46.2 14.9 145 159-325 92-243 (285)
302 PRK11840 bifunctional sulfur c 95.8 0.26 5.6E-06 47.3 13.8 121 209-334 149-290 (326)
303 PLN02858 fructose-bisphosphate 95.8 0.45 9.8E-06 54.6 18.2 199 86-336 1123-1343(1378)
304 COG2513 PrpB PEP phosphonomuta 95.8 0.17 3.6E-06 47.6 12.2 155 162-340 28-202 (289)
305 PRK05848 nicotinate-nucleotide 95.8 0.11 2.5E-06 48.9 11.3 92 212-327 168-262 (273)
306 PRK13397 3-deoxy-7-phosphohept 95.8 1.6 3.5E-05 40.6 21.3 203 14-322 3-219 (250)
307 cd06556 ICL_KPHMT Members of t 95.8 0.51 1.1E-05 43.6 15.3 146 162-339 22-190 (240)
308 TIGR01182 eda Entner-Doudoroff 95.8 0.064 1.4E-06 48.3 9.0 82 246-338 18-100 (204)
309 cd00954 NAL N-Acetylneuraminic 95.8 0.46 9.9E-06 45.1 15.4 123 160-312 22-154 (288)
310 PF01729 QRPTase_C: Quinolinat 95.8 0.13 2.8E-06 44.9 10.7 93 212-327 66-160 (169)
311 PF03740 PdxJ: Pyridoxal phosp 95.7 0.046 1E-06 50.1 7.9 72 258-329 142-221 (239)
312 TIGR00559 pdxJ pyridoxine 5'-p 95.7 0.22 4.8E-06 45.5 12.3 72 258-329 141-219 (237)
313 cd00951 KDGDH 5-dehydro-4-deox 95.7 0.23 5E-06 47.2 13.2 121 161-312 23-148 (289)
314 COG0800 Eda 2-keto-3-deoxy-6-p 95.7 0.064 1.4E-06 48.2 8.7 80 246-336 23-103 (211)
315 COG0214 SNZ1 Pyridoxine biosyn 95.7 0.12 2.7E-06 46.8 10.3 44 286-330 199-245 (296)
316 PRK05718 keto-hydroxyglutarate 95.7 0.071 1.5E-06 48.4 9.1 81 246-337 25-106 (212)
317 cd03314 MAL Methylaspartate am 95.6 0.14 3E-06 50.4 11.6 100 209-321 176-290 (369)
318 cd00003 PNPsynthase Pyridoxine 95.6 0.3 6.6E-06 44.6 12.8 72 258-329 141-218 (234)
319 PRK06015 keto-hydroxyglutarate 95.6 0.079 1.7E-06 47.6 9.0 82 246-338 14-96 (201)
320 PRK03620 5-dehydro-4-deoxygluc 95.6 0.29 6.3E-06 46.9 13.5 125 148-311 24-154 (303)
321 cd04727 pdxS PdxS is a subunit 95.6 0.31 6.7E-06 45.8 13.0 121 162-322 18-139 (283)
322 PRK12330 oxaloacetate decarbox 95.6 0.39 8.4E-06 49.1 14.8 124 157-319 98-229 (499)
323 PRK04147 N-acetylneuraminate l 95.6 0.55 1.2E-05 44.7 15.2 124 160-313 25-157 (293)
324 TIGR00343 pyridoxal 5'-phospha 95.6 0.26 5.7E-06 46.3 12.4 121 162-322 20-141 (287)
325 COG0284 PyrF Orotidine-5'-phos 95.5 0.43 9.3E-06 44.1 13.6 132 162-336 79-228 (240)
326 PRK07565 dihydroorotate dehydr 95.5 0.55 1.2E-05 45.6 15.1 101 209-321 86-196 (334)
327 PRK09722 allulose-6-phosphate 95.5 0.72 1.6E-05 42.3 14.9 122 168-331 78-208 (229)
328 cd03313 enolase Enolase: Enola 95.4 0.11 2.3E-06 52.0 10.2 101 213-321 213-334 (408)
329 PRK06852 aldolase; Validated 95.4 0.56 1.2E-05 44.9 14.4 81 246-331 186-274 (304)
330 cd00952 CHBPH_aldolase Trans-o 95.4 0.33 7.2E-06 46.6 13.2 122 160-312 30-161 (309)
331 PF00701 DHDPS: Dihydrodipicol 95.4 0.26 5.7E-06 46.7 12.2 125 159-313 22-154 (289)
332 PF01081 Aldolase: KDPG and KH 95.3 0.061 1.3E-06 48.1 7.3 81 247-338 19-100 (196)
333 TIGR03249 KdgD 5-dehydro-4-deo 95.3 0.93 2E-05 43.2 15.9 121 161-312 28-153 (296)
334 TIGR02313 HpaI-NOT-DapA 2,4-di 95.3 0.75 1.6E-05 43.8 15.2 122 161-312 23-153 (294)
335 cd02809 alpha_hydroxyacid_oxid 95.3 0.23 5.1E-06 47.4 11.6 93 216-321 107-199 (299)
336 TIGR01417 PTS_I_fam phosphoeno 95.2 3.9 8.6E-05 42.7 21.2 224 44-327 276-530 (565)
337 PRK13802 bifunctional indole-3 95.2 0.45 9.7E-06 50.6 14.3 145 162-336 73-254 (695)
338 TIGR01305 GMP_reduct_1 guanosi 95.2 0.088 1.9E-06 50.7 8.2 67 251-322 109-178 (343)
339 PRK00077 eno enolase; Provisio 95.2 0.16 3.4E-06 51.1 10.4 102 212-321 215-334 (425)
340 PRK13957 indole-3-glycerol-pho 95.1 0.84 1.8E-05 42.3 14.3 146 162-337 64-245 (247)
341 PRK06559 nicotinate-nucleotide 95.1 0.21 4.6E-06 47.3 10.6 108 194-326 160-273 (290)
342 PRK06015 keto-hydroxyglutarate 95.1 0.53 1.1E-05 42.3 12.6 48 282-331 132-180 (201)
343 PRK02412 aroD 3-dehydroquinate 95.1 1.4 3E-05 41.1 15.9 138 159-325 28-175 (253)
344 cd04742 NPD_FabD 2-Nitropropan 95.1 0.11 2.5E-06 51.7 8.9 75 254-330 169-256 (418)
345 cd00331 IGPS Indole-3-glycerol 95.0 0.082 1.8E-06 47.9 7.4 74 249-327 32-106 (217)
346 PF00682 HMGL-like: HMGL-like 95.0 1 2.2E-05 41.2 14.7 125 81-280 101-225 (237)
347 PRK05265 pyridoxine 5'-phospha 95.0 0.55 1.2E-05 43.0 12.4 71 258-329 144-220 (239)
348 cd00453 FTBP_aldolase_II Fruct 95.0 3.3 7.2E-05 40.1 18.2 116 204-324 133-274 (340)
349 PF00478 IMPDH: IMP dehydrogen 94.9 0.15 3.2E-06 49.7 9.2 67 251-322 110-177 (352)
350 PF01081 Aldolase: KDPG and KH 94.9 0.093 2E-06 47.0 7.1 45 282-327 136-181 (196)
351 cd00953 KDG_aldolase KDG (2-ke 94.9 1.2 2.6E-05 42.1 15.1 120 160-313 21-148 (279)
352 PRK08385 nicotinate-nucleotide 94.8 0.38 8.3E-06 45.4 11.3 92 212-326 169-263 (278)
353 PRK06543 nicotinate-nucleotide 94.7 0.44 9.5E-06 45.1 11.4 93 212-329 179-272 (281)
354 cd04725 OMP_decarboxylase_like 94.7 0.95 2.1E-05 41.1 13.3 140 153-335 60-213 (216)
355 PRK09250 fructose-bisphosphate 94.7 1 2.2E-05 43.7 14.0 144 164-330 151-326 (348)
356 TIGR03569 NeuB_NnaB N-acetylne 94.6 0.65 1.4E-05 45.0 12.7 125 167-316 24-160 (329)
357 cd06556 ICL_KPHMT Members of t 94.6 0.55 1.2E-05 43.4 11.8 134 159-337 89-230 (240)
358 cd07948 DRE_TIM_HCS Saccharomy 94.6 0.67 1.4E-05 43.5 12.5 138 164-324 76-223 (262)
359 TIGR02127 pyrF_sub2 orotidine 94.6 4.1 8.8E-05 38.2 18.4 144 153-334 97-256 (261)
360 TIGR01334 modD putative molybd 94.6 0.31 6.7E-06 46.0 10.0 95 212-329 175-270 (277)
361 TIGR02814 pfaD_fam PfaD family 94.6 0.18 3.9E-06 50.6 8.9 37 293-330 224-261 (444)
362 cd02810 DHOD_DHPD_FMN Dihydroo 94.5 1.1 2.3E-05 42.5 13.9 76 246-322 109-196 (289)
363 cd00377 ICL_PEPM Members of th 94.5 1.1 2.4E-05 41.5 13.6 153 162-338 19-194 (243)
364 cd07944 DRE_TIM_HOA_like 4-hyd 94.5 1.6 3.4E-05 41.0 14.8 131 85-290 106-237 (266)
365 cd04739 DHOD_like Dihydroorota 94.5 1.5 3.3E-05 42.4 15.0 147 162-321 26-194 (325)
366 TIGR00222 panB 3-methyl-2-oxob 94.5 0.6 1.3E-05 43.7 11.5 45 247-301 159-203 (263)
367 PRK06552 keto-hydroxyglutarate 94.4 0.27 5.8E-06 44.7 9.1 82 246-338 23-108 (213)
368 TIGR02321 Pphn_pyruv_hyd phosp 94.4 0.93 2E-05 43.1 13.0 155 162-339 25-202 (290)
369 TIGR02319 CPEP_Pphonmut carbox 94.4 0.9 2E-05 43.3 12.9 155 162-339 26-200 (294)
370 PLN02746 hydroxymethylglutaryl 94.3 1.1 2.3E-05 43.8 13.4 142 162-319 124-270 (347)
371 PF03102 NeuB: NeuB family; I 94.2 0.39 8.4E-06 44.5 9.7 131 166-321 3-146 (241)
372 PRK12331 oxaloacetate decarbox 94.2 1.3 2.8E-05 44.8 14.2 130 166-330 103-241 (448)
373 COG0434 SgcQ Predicted TIM-bar 94.1 0.59 1.3E-05 42.7 10.3 137 162-325 98-235 (263)
374 KOG3111 D-ribulose-5-phosphate 94.1 0.63 1.4E-05 41.2 10.1 139 149-337 71-215 (224)
375 PRK07259 dihydroorotate dehydr 94.0 0.85 1.9E-05 43.5 12.1 141 163-321 27-188 (301)
376 PRK14042 pyruvate carboxylase 94.0 1.2 2.6E-05 46.6 13.9 119 165-319 102-226 (596)
377 PRK14041 oxaloacetate decarbox 94.0 1.1 2.3E-05 45.7 13.2 135 156-331 95-241 (467)
378 TIGR00683 nanA N-acetylneurami 94.0 2.1 4.6E-05 40.7 14.6 123 160-313 22-155 (290)
379 PRK06852 aldolase; Validated 94.0 3.8 8.2E-05 39.2 16.1 151 84-312 150-301 (304)
380 PRK00311 panB 3-methyl-2-oxobu 94.0 0.68 1.5E-05 43.4 11.0 45 247-301 160-204 (264)
381 PF00682 HMGL-like: HMGL-like 93.9 0.84 1.8E-05 41.7 11.5 137 161-319 69-210 (237)
382 TIGR03586 PseI pseudaminic aci 93.9 1.4 2.9E-05 42.8 13.2 133 163-320 21-166 (327)
383 PRK06096 molybdenum transport 93.9 0.87 1.9E-05 43.2 11.6 93 212-327 176-269 (284)
384 PRK07114 keto-hydroxyglutarate 93.9 0.33 7.2E-06 44.3 8.5 82 246-338 25-111 (222)
385 cd08205 RuBisCO_IV_RLP Ribulos 93.9 1 2.2E-05 44.3 12.6 87 159-271 146-233 (367)
386 PF01487 DHquinase_I: Type I 3 93.9 2.7 5.9E-05 38.2 14.7 133 160-324 11-152 (224)
387 KOG0134 NADH:flavin oxidoreduc 93.9 0.014 3E-07 57.1 -0.6 76 10-85 15-100 (400)
388 PRK09140 2-dehydro-3-deoxy-6-p 93.8 0.42 9.2E-06 43.1 9.1 82 246-338 20-103 (206)
389 PF13714 PEP_mutase: Phosphoen 93.8 1.4 3E-05 40.7 12.6 154 162-338 19-189 (238)
390 cd07940 DRE_TIM_IPMS 2-isoprop 93.8 2.7 5.8E-05 39.4 14.8 131 83-288 109-241 (268)
391 PLN02274 inosine-5'-monophosph 93.8 0.18 3.8E-06 51.8 7.3 67 250-321 249-316 (505)
392 PLN02417 dihydrodipicolinate s 93.8 2.1 4.5E-05 40.5 14.2 122 160-313 23-152 (280)
393 PRK07896 nicotinate-nucleotide 93.8 0.92 2E-05 43.1 11.6 91 212-326 186-278 (289)
394 cd07938 DRE_TIM_HMGL 3-hydroxy 93.8 1.8 4E-05 40.8 13.7 139 163-320 77-223 (274)
395 PLN02460 indole-3-glycerol-pho 93.8 1.5 3.3E-05 42.5 13.1 147 162-337 142-332 (338)
396 PRK07107 inosine 5-monophospha 93.7 0.22 4.8E-06 51.1 7.9 68 249-321 242-311 (502)
397 PRK08195 4-hyroxy-2-oxovalerat 93.7 1.9 4.2E-05 41.9 14.1 112 87-273 114-226 (337)
398 PRK06978 nicotinate-nucleotide 93.7 0.59 1.3E-05 44.4 10.1 112 194-330 169-285 (294)
399 PRK09016 quinolinate phosphori 93.7 0.6 1.3E-05 44.4 10.1 93 212-329 195-287 (296)
400 PLN02424 ketopantoate hydroxym 93.6 1.1 2.5E-05 43.1 11.9 103 159-301 113-225 (332)
401 TIGR03128 RuMP_HxlA 3-hexulose 93.5 1.8 4E-05 38.6 12.8 118 162-324 15-135 (206)
402 TIGR02317 prpB methylisocitrat 93.5 2 4.3E-05 40.8 13.2 154 162-339 23-196 (285)
403 PRK14040 oxaloacetate decarbox 93.4 2.2 4.7E-05 44.8 14.7 129 166-331 104-243 (593)
404 PRK02048 4-hydroxy-3-methylbut 93.4 3.7 8E-05 42.6 15.8 211 15-267 12-234 (611)
405 cd00452 KDPG_aldolase KDPG and 93.4 0.61 1.3E-05 41.4 9.3 81 246-337 14-95 (190)
406 cd00381 IMPDH IMPDH: The catal 93.4 0.43 9.3E-06 46.2 8.9 66 250-321 95-162 (325)
407 cd06557 KPHMT-like Ketopantoat 93.3 1.1 2.4E-05 41.8 11.0 77 247-338 157-233 (254)
408 TIGR02660 nifV_homocitr homoci 93.2 1.5 3.3E-05 43.1 12.6 131 166-319 79-214 (365)
409 cd04740 DHOD_1B_like Dihydroor 93.2 1.8 3.9E-05 41.1 12.8 84 227-321 91-185 (296)
410 cd04743 NPD_PKS 2-Nitropropane 93.2 0.41 8.9E-06 46.1 8.3 80 252-331 114-211 (320)
411 PRK05096 guanosine 5'-monophos 93.2 0.38 8.2E-06 46.4 7.9 64 251-319 110-176 (346)
412 PRK06843 inosine 5-monophospha 93.2 0.41 9E-06 47.6 8.5 68 250-322 154-222 (404)
413 PLN02495 oxidoreductase, actin 93.2 1.3 2.7E-05 44.0 11.8 100 216-325 104-217 (385)
414 PRK07807 inosine 5-monophospha 93.2 0.4 8.7E-06 48.9 8.6 66 250-320 228-294 (479)
415 PRK07114 keto-hydroxyglutarate 93.1 0.98 2.1E-05 41.3 10.3 45 282-327 146-193 (222)
416 cd07945 DRE_TIM_CMS Leptospira 93.1 1.9 4.1E-05 40.9 12.6 137 163-319 78-220 (280)
417 cd04726 KGPDC_HPS 3-Keto-L-gul 93.1 2.6 5.5E-05 37.4 13.0 90 212-322 40-133 (202)
418 COG1954 GlpP Glycerol-3-phosph 93.1 0.47 1E-05 41.1 7.6 61 252-322 112-173 (181)
419 PRK06106 nicotinate-nucleotide 93.1 1.5 3.2E-05 41.5 11.7 90 212-326 180-270 (281)
420 cd07943 DRE_TIM_HOA 4-hydroxy- 93.1 4 8.6E-05 38.1 14.7 127 87-288 111-237 (263)
421 COG0135 TrpF Phosphoribosylant 93.1 2.7 5.9E-05 38.0 12.9 120 165-329 68-190 (208)
422 PF00834 Ribul_P_3_epim: Ribul 93.0 0.3 6.4E-06 44.0 6.6 118 168-328 76-200 (201)
423 TIGR01306 GMP_reduct_2 guanosi 93.0 0.45 9.8E-06 45.9 8.2 67 251-322 96-165 (321)
424 TIGR02321 Pphn_pyruv_hyd phosp 93.0 8.6 0.00019 36.6 20.0 208 45-326 24-239 (290)
425 PRK11858 aksA trans-homoaconit 93.0 1.9 4.1E-05 42.7 12.9 133 165-319 81-217 (378)
426 PF13714 PEP_mutase: Phosphoen 93.0 2.8 6E-05 38.8 13.1 200 49-326 22-223 (238)
427 PRK05692 hydroxymethylglutaryl 92.9 2.7 5.8E-05 40.0 13.4 135 166-319 86-228 (287)
428 PTZ00314 inosine-5'-monophosph 92.9 0.52 1.1E-05 48.3 9.1 66 251-321 243-309 (495)
429 PRK13398 3-deoxy-7-phosphohept 92.9 8.3 0.00018 36.2 22.1 99 213-323 124-232 (266)
430 cd07939 DRE_TIM_NifV Streptomy 92.9 4.7 0.0001 37.6 14.8 134 82-291 104-237 (259)
431 PRK09282 pyruvate carboxylase 92.9 2.2 4.7E-05 44.8 13.7 133 165-332 102-243 (592)
432 TIGR01302 IMP_dehydrog inosine 92.8 0.5 1.1E-05 47.9 8.8 67 250-321 225-292 (450)
433 cd03174 DRE_TIM_metallolyase D 92.8 2.2 4.7E-05 39.5 12.5 138 162-319 77-219 (265)
434 PRK11320 prpB 2-methylisocitra 92.8 4.1 8.8E-05 38.9 14.2 154 162-338 27-200 (292)
435 PF04309 G3P_antiterm: Glycero 92.6 0.086 1.9E-06 46.2 2.5 66 252-327 108-174 (175)
436 cd08210 RLP_RrRLP Ribulose bis 92.5 1.8 3.9E-05 42.6 11.8 85 159-269 141-226 (364)
437 TIGR03217 4OH_2_O_val_ald 4-hy 92.4 4.2 9.1E-05 39.5 14.2 82 159-273 143-225 (333)
438 cd07939 DRE_TIM_NifV Streptomy 92.4 2.8 6.1E-05 39.0 12.6 137 165-324 75-221 (259)
439 PF05853 DUF849: Prokaryotic p 92.3 2.5 5.5E-05 39.8 12.2 58 159-233 26-83 (272)
440 cd02940 DHPD_FMN Dihydropyrimi 92.2 7.2 0.00016 37.2 15.4 75 246-321 111-199 (299)
441 PLN02925 4-hydroxy-3-methylbut 91.9 5.9 0.00013 41.9 15.1 209 16-267 82-303 (733)
442 PRK05437 isopentenyl pyrophosp 91.9 2.3 4.9E-05 41.7 11.8 101 212-321 107-216 (352)
443 TIGR01232 lacD tagatose 1,6-di 91.9 3.5 7.7E-05 39.5 12.5 149 164-329 111-283 (325)
444 cd06557 KPHMT-like Ketopantoat 91.8 8.5 0.00018 35.9 14.9 166 162-361 22-221 (254)
445 PRK08673 3-deoxy-7-phosphohept 91.8 13 0.00029 36.1 20.4 86 227-322 202-297 (335)
446 TIGR01418 PEP_synth phosphoeno 91.8 8.8 0.00019 41.8 17.1 234 44-325 487-769 (782)
447 PRK08227 autoinducer 2 aldolas 91.6 9.3 0.0002 35.8 15.0 139 84-313 123-261 (264)
448 cd07945 DRE_TIM_CMS Leptospira 91.6 10 0.00022 35.9 15.4 138 81-290 108-245 (280)
449 PRK01222 N-(5'-phosphoribosyl) 91.5 7.8 0.00017 35.0 14.0 38 292-329 153-190 (210)
450 PRK13305 sgbH 3-keto-L-gulonat 91.4 0.4 8.7E-06 43.7 5.5 51 285-336 153-205 (218)
451 PRK05458 guanosine 5'-monophos 91.4 1 2.2E-05 43.6 8.5 67 251-322 99-168 (326)
452 cd07940 DRE_TIM_IPMS 2-isoprop 91.4 10 0.00022 35.5 15.2 131 166-319 76-218 (268)
453 PRK12399 tagatose 1,6-diphosph 91.3 5.5 0.00012 38.2 13.2 149 164-329 110-282 (324)
454 COG3684 LacD Tagatose-1,6-bisp 91.3 6 0.00013 36.8 12.8 139 164-328 116-269 (306)
455 COG1830 FbaB DhnA-type fructos 91.3 4.5 9.7E-05 37.8 12.2 119 82-274 124-242 (265)
456 TIGR01108 oadA oxaloacetate de 91.2 3.6 7.8E-05 43.1 13.0 126 157-319 92-221 (582)
457 COG1794 RacX Aspartate racemas 91.2 1.7 3.7E-05 39.5 9.1 69 202-270 8-84 (230)
458 COG3010 NanE Putative N-acetyl 91.2 7.4 0.00016 35.0 12.9 132 164-337 38-178 (229)
459 cd07941 DRE_TIM_LeuA3 Desulfob 91.1 5.6 0.00012 37.4 13.2 142 163-324 82-234 (273)
460 PRK15452 putative protease; Pr 91.1 5.8 0.00013 40.1 14.0 128 162-325 13-144 (443)
461 TIGR01303 IMP_DH_rel_1 IMP deh 91.1 0.92 2E-05 46.3 8.3 66 250-320 226-292 (475)
462 TIGR02090 LEU1_arch isopropylm 91.0 3.7 8.1E-05 40.3 12.3 132 165-319 77-213 (363)
463 COG1830 FbaB DhnA-type fructos 90.8 8.9 0.00019 35.8 13.7 74 247-330 165-245 (265)
464 COG0119 LeuA Isopropylmalate/h 90.7 6.4 0.00014 39.4 13.7 144 154-319 71-220 (409)
465 cd02922 FCB2_FMN Flavocytochro 90.7 3.6 7.9E-05 40.1 11.8 39 282-321 202-240 (344)
466 PRK12331 oxaloacetate decarbox 90.7 8.6 0.00019 39.0 14.8 157 147-338 21-195 (448)
467 COG0800 Eda 2-keto-3-deoxy-6-p 90.7 2.4 5.1E-05 38.3 9.5 32 294-326 154-185 (211)
468 COG0157 NadC Nicotinate-nucleo 90.6 2.4 5.2E-05 39.8 9.9 96 212-330 174-270 (280)
469 PRK00278 trpC indole-3-glycero 90.6 8.2 0.00018 36.1 13.7 131 161-337 72-206 (260)
470 PRK12595 bifunctional 3-deoxy- 90.6 18 0.0004 35.5 20.5 105 213-331 215-329 (360)
471 PRK11572 copper homeostasis pr 90.6 7.3 0.00016 36.2 12.9 138 149-329 67-206 (248)
472 COG0710 AroD 3-dehydroquinate 90.5 7.5 0.00016 35.7 12.9 85 159-268 14-99 (231)
473 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.4 16 0.00034 34.4 17.2 97 159-289 149-245 (275)
474 PRK05692 hydroxymethylglutaryl 90.3 16 0.00035 34.7 15.5 125 80-273 112-236 (287)
475 PRK12999 pyruvate carboxylase; 90.2 7.2 0.00016 44.2 15.0 127 165-321 633-765 (1146)
476 KOG0538 Glycolate oxidase [Ene 90.1 0.94 2E-05 43.0 6.7 99 213-328 212-313 (363)
477 PRK12330 oxaloacetate decarbox 90.1 19 0.0004 37.0 16.6 159 147-338 22-196 (499)
478 PRK04161 tagatose 1,6-diphosph 90.1 6.6 0.00014 37.8 12.5 147 164-329 112-284 (329)
479 PRK08318 dihydropyrimidine deh 90.1 12 0.00026 37.4 15.3 75 246-321 111-199 (420)
480 PRK02227 hypothetical protein; 90.0 14 0.0003 34.1 14.1 127 162-322 10-151 (238)
481 PLN00191 enolase 90.0 1.7 3.6E-05 44.1 9.0 68 246-321 296-366 (457)
482 TIGR02320 PEP_mutase phosphoen 90.0 3.9 8.5E-05 38.8 11.0 153 162-338 19-204 (285)
483 PRK11613 folP dihydropteroate 90.0 2.6 5.6E-05 40.0 9.7 101 232-337 23-131 (282)
484 cd01571 NAPRTase_B Nicotinate 89.7 3.9 8.5E-05 39.2 10.9 104 212-329 170-280 (302)
485 cd07941 DRE_TIM_LeuA3 Desulfob 89.7 13 0.00028 35.0 14.3 128 81-280 112-239 (273)
486 PRK12344 putative alpha-isopro 89.7 6.8 0.00015 40.5 13.4 134 166-319 92-230 (524)
487 TIGR02090 LEU1_arch isopropylm 89.5 11 0.00024 37.0 14.2 117 81-273 105-221 (363)
488 COG2876 AroA 3-deoxy-D-arabino 89.4 13 0.00028 34.7 13.4 144 159-321 59-248 (286)
489 PF02548 Pantoate_transf: Keto 89.4 2.6 5.5E-05 39.4 9.0 98 159-301 95-205 (261)
490 TIGR01496 DHPS dihydropteroate 89.3 3 6.6E-05 38.9 9.6 101 232-337 8-116 (257)
491 PRK00311 panB 3-methyl-2-oxobu 89.3 19 0.00042 33.8 15.1 167 162-360 25-223 (264)
492 KOG2550 IMP dehydrogenase/GMP 89.3 1.1 2.3E-05 44.2 6.6 75 248-327 250-327 (503)
493 cd07943 DRE_TIM_HOA 4-hydroxy- 89.3 16 0.00034 34.1 14.5 128 165-330 91-229 (263)
494 COG0352 ThiE Thiamine monophos 89.2 6.7 0.00014 35.5 11.4 107 162-324 24-133 (211)
495 cd04722 TIM_phosphate_binding 89.1 12 0.00026 32.1 12.9 133 159-326 12-147 (200)
496 cd00958 DhnA Class I fructose- 89.0 15 0.00033 33.4 14.0 111 83-268 104-214 (235)
497 PRK00366 ispG 4-hydroxy-3-meth 89.0 2 4.3E-05 41.7 8.2 75 246-328 40-114 (360)
498 PRK05567 inosine 5'-monophosph 88.9 1.8 3.9E-05 44.3 8.5 67 250-321 229-296 (486)
499 COG0134 TrpC Indole-3-glycerol 88.8 3.5 7.7E-05 38.3 9.5 54 283-337 195-251 (254)
500 COG0413 PanB Ketopantoate hydr 88.7 9.2 0.0002 35.6 11.9 134 159-337 94-235 (268)
No 1
>PLN02411 12-oxophytodienoate reductase
Probab=100.00 E-value=2.6e-89 Score=671.28 Aligned_cols=359 Identities=58% Similarity=0.998 Sum_probs=309.9
Q ss_pred CCCccCCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhh
Q 017733 8 TTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQV 87 (367)
Q Consensus 8 ~~~~~Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~ 87 (367)
..+++||+|++||+++|||||+|+||+++++.||.||+.+++||++||+|+||||+|+++|++.|+.+++++++|+|+++
T Consensus 7 ~~~~~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i 86 (391)
T PLN02411 7 NSNETLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQV 86 (391)
T ss_pred CCchhcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHH
Confidence 45689999999999999999999999988888899999999999999995599999999999999999999999999999
Q ss_pred hhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCC-----CCC--CCCCCCCCCChHHHHHHHHH
Q 017733 88 EAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPG-----VDG--LDWSPPRPLSIEEIPKIVND 160 (367)
Q Consensus 88 ~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~-----~~~--~~~~~~~~mt~~eI~~ii~~ 160 (367)
++||+|+++||++|+++++||+|+||++.+.+...+..+++||.++..+. ..+ .....|++||.+||+++|++
T Consensus 87 ~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~ 166 (391)
T PLN02411 87 EAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEH 166 (391)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999997654333556788887543210 000 01346899999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
|++||+||++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||+++|++.|+||||+.+++.+
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~ 246 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLD 246 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999998655443
Q ss_pred cCCCChHHHHHHHHHHhhhc------CccEEEEecCCcccc---C--Cch---hhHHHHHHHHHhcCCcEEEeCCCCHHH
Q 017733 241 AVDSNPEALGLYMAKALNKF------KLLYLHVIEPRMIQL---T--DKS---ETQRSLLSMRRAFEGTFIAAGGYSRDE 306 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~------Gvd~i~v~~~~~~~~---~--~~~---~~~~~~~~ir~~~~~pvi~~Ggit~~~ 306 (367)
..+.++.++...+++.|+.. |+||||++.+.+... . ... ....+++.||+.+++||+++|++++++
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i~~~~ 326 (391)
T PLN02411 247 ATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGFTREL 326 (391)
T ss_pred CCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCCCHHH
Confidence 22344567788888888764 599999998754211 0 011 123467889999999999999999999
Q ss_pred HHHHHHcCCCcEEcccHHHHhCCchHHHHHhCCCCCCCCCcccccCCCCCCcccCCCCcC
Q 017733 307 GNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLKL 366 (367)
Q Consensus 307 a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (367)
|+++|++|++|+|+|||++++||||++|+++|+++++++++++|++....||++||+|.+
T Consensus 327 a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g~~l~~~~~~~~~~~~~~~gy~~~p~~~~ 386 (391)
T PLN02411 327 GMQAVQQGDADLVSYGRLFISNPDLVLRFKLNAPLNKYIRKTFYTQDPVVGYTDYPFLSQ 386 (391)
T ss_pred HHHHHHcCCCCEEEECHHHHhCccHHHHHhcCCCCCCCChhheeCCCCCCCCCccccccc
Confidence 999999999999999999999999999999999999999999997334469999998754
No 2
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=7.1e-88 Score=650.21 Aligned_cols=348 Identities=39% Similarity=0.631 Sum_probs=304.5
Q ss_pred CCccCCCccccCCeeeCCceeeCcCCCCcc-CCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHh
Q 017733 9 TNIPLLTAYKMGQFNLSHRMVLAPLTRIRS-YNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQ 86 (367)
Q Consensus 9 ~~~~Lf~Pl~ig~~~lkNRiv~apm~~~~~-~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~ 86 (367)
.+++||+|++||+++|||||+|+||+++++ .+|.||+.++.||++||+ |+||||||.+.|++.|+.+++.+++|+|++
T Consensus 2 ~~~~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~ 81 (363)
T COG1902 2 SMPKLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQ 81 (363)
T ss_pred CccccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhH
Confidence 356799999999999999999999999998 689999999999999999 799999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAAR 166 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~ 166 (367)
+++|++++++||++|+++++||+|+||++..... ....+++||+++.... ....|++||++||+++|++|++||+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~-~~~~~vapS~~~~~~~----~~~~pr~mt~~eI~~ii~~f~~AA~ 156 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHP-WLPSAVAPSAIPAPGG----RRATPRELTEEEIEEVIEDFARAAR 156 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCccccccccc-CCCcccCCCccccccC----CCCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865432 1257899998876531 2468999999999999999999999
Q ss_pred HHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCC
Q 017733 167 NAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 167 ~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~ 245 (367)
||++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++|||+.+... ..+.
T Consensus 157 rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~--~~g~ 234 (363)
T COG1902 157 RAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD--GGGL 234 (363)
T ss_pred HHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC--CCCC
Confidence 999999999999999999999999999999999999999999999999999999999988 7999999975412 2245
Q ss_pred hHHHHHHHHHHhhhcC-ccEEEEecCCccccC----C-chhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 246 PEALGLYMAKALNKFK-LLYLHVIEPRMIQLT----D-KSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~G-vd~i~v~~~~~~~~~----~-~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
+.+++.++++.|++.| +||||++.+...... . ...+..++..+|..+++|||++|++ ++++|+++|++|.+|+
T Consensus 235 ~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDl 314 (363)
T COG1902 235 TIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADL 314 (363)
T ss_pred CHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCE
Confidence 6888999999999999 799999988763211 1 2234567788999999999999998 8999999999999999
Q ss_pred EcccHHHHhCCchHHHHHhCCCCCCCCCcccccCCCCCCcccCCCCc
Q 017733 319 VAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLK 365 (367)
Q Consensus 319 V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (367)
|+|||++++||+|++|+++|++. -.+..++.+....||++++...
T Consensus 315 Va~gR~~ladP~~~~k~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~ 359 (363)
T COG1902 315 VAMGRPFLADPDLVLKAAEGREL--EIRPCIYCNQYCLGYTDYPLLK 359 (363)
T ss_pred EEechhhhcCccHHHHHHcCCCc--cccccccccchhhhccccccch
Confidence 99999999999999999999885 2222233334556888877553
No 3
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=3.6e-87 Score=650.45 Aligned_cols=350 Identities=43% Similarity=0.741 Sum_probs=306.3
Q ss_pred ccCCCccccCCeeeCCceeeCcCCCCcc--CCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhh
Q 017733 11 IPLLTAYKMGQFNLSHRMVLAPLTRIRS--YNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVE 88 (367)
Q Consensus 11 ~~Lf~Pl~ig~~~lkNRiv~apm~~~~~--~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~ 88 (367)
++||+|++||+++|||||+++||+++.+ .+|.||+.+++||++|| |+||||+|+++|++.|+..++++++|+|++++
T Consensus 1 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~ 79 (362)
T PRK10605 1 EKLFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIA 79 (362)
T ss_pred CCCCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHH
Confidence 4699999999999999999999987554 57899999999999999 79999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCC-----CC----CCCCCCCCCChHHHHHHHH
Q 017733 89 AWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGV-----DG----LDWSPPRPLSIEEIPKIVN 159 (367)
Q Consensus 89 ~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~-----~~----~~~~~~~~mt~~eI~~ii~ 159 (367)
+||+++++||++|+++++||+|+||++.....+.+..+++||+++..... .+ .....|++||.+||+++|+
T Consensus 80 ~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 159 (362)
T PRK10605 80 AWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVN 159 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHH
Confidence 99999999999999999999999999876554345568999987653100 00 1135689999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
+|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++.|+||||+.+.++
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999965332
Q ss_pred ccCCCChHHH-HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcE
Q 017733 240 EAVDSNPEAL-GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDL 318 (367)
Q Consensus 240 ~~~~~~~~~~-~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~ 318 (367)
...++.+.++ +.++++.|++.|+|||||+.+.+.. ..+....+.+.||+.+++||+++|++|++.|+++|++|.+|+
T Consensus 240 ~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~--~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 240 NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG--GEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDA 317 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC--CccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCE
Confidence 2223345566 7999999999999999998764321 112234567889999999999999999999999999999999
Q ss_pred EcccHHHHhCCchHHHHHhCCCCCCCCCcccccCCCCCCcccCCCC
Q 017733 319 VAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFL 364 (367)
Q Consensus 319 V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (367)
|+|||++++||+|++|+++|+++++++...+++ ...-||++||.|
T Consensus 318 V~~gR~~iadPd~~~k~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 362 (362)
T PRK10605 318 VAFGRDYIANPDLVARLQRKAELNPQRPESFYG-GGAEGYTDYPTL 362 (362)
T ss_pred EEECHHhhhCccHHHHHhcCCCCCCCChhhhcC-CCCCCCcCCCCC
Confidence 999999999999999999999999999999987 334699999864
No 4
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=2.8e-83 Score=618.33 Aligned_cols=333 Identities=54% Similarity=0.898 Sum_probs=296.8
Q ss_pred cCCCccccCCeeeCCceeeCcCCCCcc-CCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhh
Q 017733 12 PLLTAYKMGQFNLSHRMVLAPLTRIRS-YNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAW 90 (367)
Q Consensus 12 ~Lf~Pl~ig~~~lkNRiv~apm~~~~~-~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~ 90 (367)
+||+|++||+++|||||+++||+..++ .+|.||+.+++||++||+| ||||+|+++|++.|+..++++++|+|+++++|
T Consensus 1 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~l 79 (338)
T cd02933 1 KLFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGW 79 (338)
T ss_pred CCCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHH
Confidence 699999999999999999999998887 7999999999999999997 99999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCC----CCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017733 91 KPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPG----VDGLDWSPPRPLSIEEIPKIVNDFRLAAR 166 (367)
Q Consensus 91 ~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~----~~~~~~~~~~~mt~~eI~~ii~~f~~aA~ 166 (367)
|+++++||++|+++++||+|+||++.......+..+++||+++.... ........|++||.+||+++|++|++||+
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 159 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAAR 159 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654212456799998764310 00002346899999999999999999999
Q ss_pred HHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCCh
Q 017733 167 NAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNP 246 (367)
Q Consensus 167 ~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~ 246 (367)
+|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++|+++|+||+|+.+...+..++.+
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998789999999754433223456
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.+++.++++.|++.|+|+|+|+.+...... ...+..+++.||+.+++||+++|++++++|+++|++|.||+|+|||+++
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~l 318 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNP-EDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFI 318 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhh
Confidence 788999999999999999999776543222 3456778899999999999999999999999999999999999999999
Q ss_pred hCCchHHHHHhCCCCCCCCC
Q 017733 327 ANPDLPKRFELNAPLNKYNR 346 (367)
Q Consensus 327 adP~l~~k~~~g~~~~~~~~ 346 (367)
+||+|++|+++|+++..|++
T Consensus 319 adP~~~~k~~~g~~~~~~~~ 338 (338)
T cd02933 319 ANPDLVERLKNGAPLNEYDR 338 (338)
T ss_pred hCcCHHHHHhcCCCCCCCCC
Confidence 99999999999999998874
No 5
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=3.5e-83 Score=620.12 Aligned_cols=325 Identities=38% Similarity=0.654 Sum_probs=266.1
Q ss_pred cCCCccccCCeeeCCceeeCcCCCCcc-CCC-CCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhh
Q 017733 12 PLLTAYKMGQFNLSHRMVLAPLTRIRS-YNH-IPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVE 88 (367)
Q Consensus 12 ~Lf~Pl~ig~~~lkNRiv~apm~~~~~-~~g-~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~ 88 (367)
+||+|++||+++|||||+|+||+++++ .+| .|++.+++||++||+ |+||||+|+++|++.+..+++++++|+|++++
T Consensus 1 ~LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~ 80 (341)
T PF00724_consen 1 KLFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIP 80 (341)
T ss_dssp GGGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHH
T ss_pred CCCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHH
Confidence 599999999999999999999999888 677 667799999999999 89999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017733 89 AWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNA 168 (367)
Q Consensus 89 ~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a 168 (367)
+||+++++||++|+++++||+|+||++.+... +..+++||+....+.........+++||.+||+++|++|++||++|
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~--~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A 158 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGRQANPEYS--GDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRA 158 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GGGSSGCCS--GGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccceeeccccccccCcccC--CCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987653 3344677743221100000123458999999999999999999999
Q ss_pred HHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChH
Q 017733 169 IEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 169 ~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~ 247 (367)
++|||||||||+|||||++|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||||+.+...+ +.+.
T Consensus 159 ~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~---g~~~ 235 (341)
T PF00724_consen 159 KEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEG---GITL 235 (341)
T ss_dssp HHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTT---SHHS
T ss_pred HHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCC---CCch
Confidence 9999999999999999999999999999999999999999999999999999999988 69999999764432 3355
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccc---cC-----C--chhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQ---LT-----D--KSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~---~~-----~--~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
++..++++.+++.|+|+++++...+.. +. . ...+...++.+|+.+++|||++|++ +++.|+++|++|++
T Consensus 236 ~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~ 315 (341)
T PF00724_consen 236 EETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKA 315 (341)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCc
Confidence 777889999999999998876543211 11 1 1123467889999999999999999 68889999999999
Q ss_pred cEEcccHHHHhCCchHHHHHhCCCC
Q 017733 317 DLVAFGRLFLANPDLPKRFELNAPL 341 (367)
Q Consensus 317 D~V~~gR~~ladP~l~~k~~~g~~~ 341 (367)
|+|+|||++++|||||+|+++|++.
T Consensus 316 DlV~~gR~~ladPd~~~k~~~g~~d 340 (341)
T PF00724_consen 316 DLVAMGRPLLADPDLPNKAREGRED 340 (341)
T ss_dssp SEEEESHHHHH-TTHHHHHHHTTGG
T ss_pred eEeeccHHHHhCchHHHHHHcCCcc
Confidence 9999999999999999999999874
No 6
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=3.2e-81 Score=605.98 Aligned_cols=330 Identities=29% Similarity=0.443 Sum_probs=286.8
Q ss_pred CCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCC-CCCCcCCCHHhhhhh
Q 017733 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGY-PNTPGIWTKEQVEAW 90 (367)
Q Consensus 13 Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~-~~~~~~~~~~~~~~~ 90 (367)
||+|++||+++|||||+++||++..+.+|.||+.+++||++||+ |+||||||+++|++.+... ++++++|+|+++++|
T Consensus 1 Lf~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~ 80 (361)
T cd04747 1 LFTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGW 80 (361)
T ss_pred CCCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHH
Confidence 89999999999999999999998877889999999999999998 8999999999998765544 678899999999999
Q ss_pred hHHHHHHHHcCCeeEEccccCCccCCCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017733 91 KPIVDAVHQKGGIIFCQIWHAGRVSNYGLQ-PNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAI 169 (367)
Q Consensus 91 ~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~-~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~ 169 (367)
|+++++||++|+++++||+|+||++..... ..+..+++||+++... ...|++||.+||+++|++|++||++|+
T Consensus 81 ~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~------~~~p~~mt~~eI~~ii~~f~~AA~~a~ 154 (361)
T cd04747 81 KKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPG------KPVGREMTEADIDDVIAAFARAAADAR 154 (361)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCC------CCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999864321 1244678999876431 346899999999999999999999999
Q ss_pred HhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccc-cCCCChH
Q 017733 170 EAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAE-AVDSNPE 247 (367)
Q Consensus 170 ~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~-~~~~~~~ 247 (367)
+|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||+|+++.... ..++.+.
T Consensus 155 ~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~ 234 (361)
T cd04747 155 RLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTP 234 (361)
T ss_pred HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999987 79999998532110 0123567
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-------------------CHHHHH
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-------------------SRDEGN 308 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-------------------t~~~a~ 308 (367)
+++.++++.|++.|+||||++.+.+..+.........++.+|+.+++||+++|++ |+++++
T Consensus 235 ~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~ 314 (361)
T cd04747 235 DELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLL 314 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHH
Confidence 7889999999999999999987653222111223456778999999999999997 789999
Q ss_pred HHHHcCCCcEEcccHHHHhCCchHHHHHhCCC--CCCCCCcc
Q 017733 309 KAVAANYTDLVAFGRLFLANPDLPKRFELNAP--LNKYNRST 348 (367)
Q Consensus 309 ~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~~--~~~~~~~~ 348 (367)
++|++|+||+|++||++++||+|++|+++|+. +.+||++.
T Consensus 315 ~~l~~g~~D~V~~gR~~iadP~~~~k~~~g~~~~Ir~~~~~~ 356 (361)
T cd04747 315 ERLERGEFDLVAVGRALLSDPAWVAKVREGRLDELIPFSRAA 356 (361)
T ss_pred HHHHCCCCCeehhhHHHHhCcHHHHHHHcCCcccccCCCHHH
Confidence 99999999999999999999999999999975 67887653
No 7
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=1.1e-80 Score=602.25 Aligned_cols=324 Identities=27% Similarity=0.409 Sum_probs=289.4
Q ss_pred CCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhh
Q 017733 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWK 91 (367)
Q Consensus 13 Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~ 91 (367)
||+|++||+++|||||+|+||++.++.+|.||+.+++||++||+ |+||||+|+++|++.|+.+++++++|+|+++++||
T Consensus 1 Lf~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 1 LLSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CCCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 89999999999999999999998777889999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 017733 92 PIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEA 171 (367)
Q Consensus 92 ~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~a 171 (367)
+|+++||++|+++++||+|+||++.... .+.++++||+++... ....|++||.+||++++++|++||++|++|
T Consensus 81 ~l~~~vh~~g~~~~~Ql~H~G~~~~~~~--~~~~~~~ps~~~~~~-----~~~~~~~mt~~eI~~ii~~f~~AA~ra~~a 153 (343)
T cd04734 81 RLAEAVHAHGAVIMIQLTHLGRRGDGDG--SWLPPLAPSAVPEPR-----HRAVPKAMEEEDIEEIIAAFADAARRCQAG 153 (343)
T ss_pred HHHHHHHhcCCeEEEeccCCCcCcCccc--CCCcccCCCCCCCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999987433 356789999876432 245689999999999999999999999999
Q ss_pred CCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHH
Q 017733 172 GFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALG 250 (367)
Q Consensus 172 GfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~ 250 (367)
||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++||++.+... ++.+.+++
T Consensus 154 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~---~G~~~~e~ 230 (343)
T cd04734 154 GLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE---GGLSPDEA 230 (343)
T ss_pred CCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC---CCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999977 7999999865432 23457888
Q ss_pred HHHHHHhhhcC-ccEEEEecCCcccc-----------CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 017733 251 LYMAKALNKFK-LLYLHVIEPRMIQL-----------TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTD 317 (367)
Q Consensus 251 ~~l~~~L~~~G-vd~i~v~~~~~~~~-----------~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 317 (367)
.++++.|+++| +|+|+|+.+.+... .....+..+++.+|+.+++||+++|++ |+++++++|+.|.+|
T Consensus 231 ~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D 310 (343)
T cd04734 231 LEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHAD 310 (343)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCC
Confidence 99999999998 99999987764322 111224567788999999999999999 899999999999999
Q ss_pred EEcccHHHHhCCchHHHHHhCCC--CCCCCC
Q 017733 318 LVAFGRLFLANPDLPKRFELNAP--LNKYNR 346 (367)
Q Consensus 318 ~V~~gR~~ladP~l~~k~~~g~~--~~~~~~ 346 (367)
+|++||++++||+|++|+++|+. +.+|-.
T Consensus 311 ~V~~gR~~ladP~l~~k~~~g~~~~i~~C~~ 341 (343)
T cd04734 311 MVGMTRAHIADPHLVAKAREGREDDIRPCIG 341 (343)
T ss_pred eeeecHHhHhCccHHHHHHcCCccCcCcCcC
Confidence 99999999999999999999984 344543
No 8
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=1.4e-80 Score=598.56 Aligned_cols=317 Identities=27% Similarity=0.377 Sum_probs=284.1
Q ss_pred ccCCCccccCCeeeCCceeeCcCCCCcc--CCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhh
Q 017733 11 IPLLTAYKMGQFNLSHRMVLAPLTRIRS--YNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQV 87 (367)
Q Consensus 11 ~~Lf~Pl~ig~~~lkNRiv~apm~~~~~--~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~ 87 (367)
++||+|++||+++|||||+++||++..+ .||.||+++++||++||+ |+||||+|++.|++.|...++++++|+|+++
T Consensus 1 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i 80 (337)
T PRK13523 1 SKLFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHI 80 (337)
T ss_pred CCCCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHH
Confidence 4699999999999999999999987765 589999999999999998 8999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 017733 88 EAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARN 167 (367)
Q Consensus 88 ~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~ 167 (367)
++||+++++||++|+++++||+|+||++.. .+ .+++||+++... ....|++||.+||+++|++|++||++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~----~~-~~~~ps~~~~~~-----~~~~p~~mt~eeI~~ii~~f~~aA~~ 150 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGRKAEL----EG-DIVAPSAIPFDE-----KSKTPVEMTKEQIKETVLAFKQAAVR 150 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCCC----CC-CccCCCCCCCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998742 22 458999887542 13578999999999999999999999
Q ss_pred HHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChH
Q 017733 168 AIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 168 a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~ 247 (367)
|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++ +.+|+||+|+.+... ++.+.
T Consensus 151 a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~---~G~~~ 226 (337)
T PRK13523 151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHP---GGLTV 226 (337)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCC---CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999 468999999965332 24467
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccC---CchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccH
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLT---DKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~---~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR 323 (367)
+++.++++.|++.|+|||+++.+++.... ....+..+++.+|+.+++||+++|++ |+++|+++|++|.+|+|++||
T Consensus 227 ~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR 306 (337)
T PRK13523 227 QDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGR 306 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhH
Confidence 88999999999999999999988643211 11224567889999999999999999 899999999999999999999
Q ss_pred HHHhCCchHHHHHhCCCC
Q 017733 324 LFLANPDLPKRFELNAPL 341 (367)
Q Consensus 324 ~~ladP~l~~k~~~g~~~ 341 (367)
++++||+|++|++++..-
T Consensus 307 ~~iadP~~~~k~~~~~~~ 324 (337)
T PRK13523 307 ELLRNPYFPRIAAKELGF 324 (337)
T ss_pred HHHhCccHHHHHHHHcCC
Confidence 999999999999998543
No 9
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.9e-80 Score=599.53 Aligned_cols=319 Identities=28% Similarity=0.438 Sum_probs=283.2
Q ss_pred CCCccccCC-eeeCCceeeCcCCCCcc-CCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCC---CCCcCCCHHh
Q 017733 13 LLTAYKMGQ-FNLSHRMVLAPLTRIRS-YNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYP---NTPGIWTKEQ 86 (367)
Q Consensus 13 Lf~Pl~ig~-~~lkNRiv~apm~~~~~-~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~---~~~~~~~~~~ 86 (367)
||+|++||+ +||||||+|+||+++++ .||.||+++++||++||+ |+||||+|.++|++.|+..+ +++++|+|++
T Consensus 1 Lf~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~ 80 (338)
T cd04733 1 LGQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGED 80 (338)
T ss_pred CCCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHH
Confidence 899999995 99999999999998887 899999999999999998 89999999999999999888 8899999999
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAAR 166 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~ 166 (367)
+++||+|+++||++|+++++||+|+||++.... +..+++||+++..... ......|++||.+||++++++|++||+
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~---~~~~~~ps~~~~~~~~-~~~~~~p~~mt~~eI~~~i~~~~~aA~ 156 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLNHPGRQSPAGL---NQNPVAPSVALDPGGL-GKLFGKPRAMTEEEIEDVIDRFAHAAR 156 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCcCCCccC---CCCCcCCCCCcCcccc-cccCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986543 2356899887643210 012357899999999999999999999
Q ss_pred HHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCC
Q 017733 167 NAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 167 ~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~ 245 (367)
+|++|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++|++ +|+||+|+.+.. . .+.
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~-~--~g~ 233 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ-R--GGF 233 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC-C--CCC
Confidence 999999999999999999999999999999999999999999999999999999999987 899999985322 2 234
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCC-----------chhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTD-----------KSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAA 313 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~-----------~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~ 313 (367)
+.+++.++++.|++.|+|||+|+.+.+.++.. ...+...++.||+++++||+++|++ |+++++++|++
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~ 313 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALAS 313 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHc
Confidence 57889999999999999999999876543221 1112456778999999999999999 89999999999
Q ss_pred CCCcEEcccHHHHhCCchHHHHHhC
Q 017733 314 NYTDLVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 314 G~~D~V~~gR~~ladP~l~~k~~~g 338 (367)
|.+|+|+|||++++||+|++|+++|
T Consensus 314 g~aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 314 GAVDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred CCCCeeeeChHhhhCccHHHHHhcC
Confidence 9999999999999999999999986
No 10
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.2e-79 Score=597.83 Aligned_cols=320 Identities=33% Similarity=0.492 Sum_probs=284.2
Q ss_pred CCCccccCC-eeeCCceeeCcCCCCcc-CCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhh
Q 017733 13 LLTAYKMGQ-FNLSHRMVLAPLTRIRS-YNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAW 90 (367)
Q Consensus 13 Lf~Pl~ig~-~~lkNRiv~apm~~~~~-~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~ 90 (367)
||+|++||+ ++|||||+|+||++.++ .+|.||+.+++||++||+|+||||+|+++|++.++.+++++++|+|+++++|
T Consensus 1 Lf~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~ 80 (353)
T cd04735 1 LFEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGL 80 (353)
T ss_pred CCCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHH
Confidence 899999998 99999999999999888 7999999999999999988999999999999999989999999999999999
Q ss_pred hHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 017733 91 KPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIE 170 (367)
Q Consensus 91 ~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~ 170 (367)
|+++++||++|+++++||+|+||++..... .+.++++||+++.... ....|++||.+||++||++|++||++|++
T Consensus 81 ~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~-~~~~~~~ps~~~~~~~----~~~~p~~mt~~eI~~ii~~f~~aA~~a~~ 155 (353)
T cd04735 81 RKLAQAIKSKGAKAILQIFHAGRMANPALV-PGGDVVSPSAIAAFRP----GAHTPRELTHEEIEDIIDAFGEATRRAIE 155 (353)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCcccc-CCCceecCCCCcccCC----CCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876543 3456799998763211 14568999999999999999999999999
Q ss_pred hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhC----Cc-ceEEEeCCCccccccCCCC
Q 017733 171 AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIG----AE-RVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 171 aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg----~~-~i~vrls~~~~~~~~~~~~ 245 (367)
|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++| ++ +|++|+|+.+... ++.
T Consensus 156 aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~---~g~ 232 (353)
T cd04735 156 AGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEE---PGI 232 (353)
T ss_pred cCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccC---CCC
Confidence 999999999999999999999999999999999999999999999999999998 55 7999999865332 234
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccC--CchhhHHHHHHHHHhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLT--DKSETQRSLLSMRRAF--EGTFIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~--~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
+.+++.++++.|++.|+|||+|+.+.+.... .........+.+++.+ ++||+++|++ |+++++++|+.| +|+|+
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g-aD~V~ 311 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETG-ADLVA 311 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CChHH
Confidence 5788899999999999999999987653221 1112345667788887 7899999999 899999999997 99999
Q ss_pred ccHHHHhCCchHHHHHhCCCC
Q 017733 321 FGRLFLANPDLPKRFELNAPL 341 (367)
Q Consensus 321 ~gR~~ladP~l~~k~~~g~~~ 341 (367)
+||++++||+|++|+++|++.
T Consensus 312 ~gR~liadPdl~~k~~~G~~~ 332 (353)
T cd04735 312 IGRGLLVDPDWVEKIKEGRED 332 (353)
T ss_pred HhHHHHhCccHHHHHHcCChh
Confidence 999999999999999999753
No 11
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.3e-78 Score=595.14 Aligned_cols=330 Identities=28% Similarity=0.407 Sum_probs=282.2
Q ss_pred CCCccccCCeeeCCceeeCcCCC-Ccc-CCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCC--CC--CCcCCCHH
Q 017733 13 LLTAYKMGQFNLSHRMVLAPLTR-IRS-YNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGY--PN--TPGIWTKE 85 (367)
Q Consensus 13 Lf~Pl~ig~~~lkNRiv~apm~~-~~~-~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~--~~--~~~~~~~~ 85 (367)
||+|++||+++|||||+++||+. .++ .||.||+++++||++||+ |+||||+|+++|++.+... ++ ++.+++++
T Consensus 1 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd02931 1 LFEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTA 80 (382)
T ss_pred CCCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHH
Confidence 89999999999999999999975 454 799999999999999998 8999999999999886432 23 33566778
Q ss_pred hhhhhhHHHHHHHHcCCeeEEccccC-CccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017733 86 QVEAWKPIVDAVHQKGGIIFCQIWHA-GRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLA 164 (367)
Q Consensus 86 ~~~~~~~l~~~vh~~g~~~~~Ql~h~-Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~a 164 (367)
++++||+++++||++|+++++||+|. ||++.+... .+..+++||+++... . ....|++||.+||+++|++|++|
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~-~~~~~~~ps~~~~~~-~---~~~~p~~mt~~eI~~ii~~f~~A 155 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFL-GEDKPVAPSPIPNRW-L---PEITCRELTTEEVETFVGKFGES 155 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEccCcCCCccCcccc-CCCCccCCCCCCCCc-C---CCCCCCcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999997 999876543 235679999977431 0 13578999999999999999999
Q ss_pred HHHHHHhCCCEEEEeccc-chHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcccccc-
Q 017733 165 ARNAIEAGFDGVEIHGAN-GYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEA- 241 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~-gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~- 241 (367)
|++|++|||||||||++| ||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||+|+++...+.
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~ 235 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR 235 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccc
Confidence 999999999999999999 99999999999999999999999999999999999999999987 899999985422110
Q ss_pred ----------CCCChHHHHHHHHHHhhhcCccEEEEecCCccccC--------CchhhHHHHHHHHHhcCCcEEEeCCC-
Q 017733 242 ----------VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT--------DKSETQRSLLSMRRAFEGTFIAAGGY- 302 (367)
Q Consensus 242 ----------~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~--------~~~~~~~~~~~ir~~~~~pvi~~Ggi- 302 (367)
.++.+.+++.++++.|+++|+|||+++.+++.... ....+..+++.+|+.+++||+++|++
T Consensus 236 ~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~ 315 (382)
T cd02931 236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRME 315 (382)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCC
Confidence 12346788999999999999999999987643211 11223467788999999999999999
Q ss_pred CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCCC--CCCCCCc
Q 017733 303 SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAP--LNKYNRS 347 (367)
Q Consensus 303 t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~~--~~~~~~~ 347 (367)
++++++++|++|.+|+|+|||++++||||++|+++|+. +.+|-.+
T Consensus 316 ~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~C 362 (382)
T cd02931 316 DPELASEAINEGIADMISLGRPLLADPDVVNKIRRGRFKNIRPCISC 362 (382)
T ss_pred CHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcCCcccCcCChhh
Confidence 89999999999999999999999999999999999974 4455444
No 12
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=2.1e-78 Score=591.38 Aligned_cols=334 Identities=22% Similarity=0.315 Sum_probs=284.1
Q ss_pred CccCCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCC-CCcCCCHHhh
Q 017733 10 NIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPN-TPGIWTKEQV 87 (367)
Q Consensus 10 ~~~Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~-~~~~~~~~~~ 87 (367)
+++||+|++||++||||||+++||++..+.+ . +..+..||++||+ |+||||+|.++|++.|+..++ ++++|+|+++
T Consensus 5 ~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~-~-~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i 82 (370)
T cd02929 5 HDILFEPIKIGPVTARNRFYQVPHCNGMGYR-K-PSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDI 82 (370)
T ss_pred ccccCCCccCCCEEeccceEECCcccCcCCC-C-hHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHH
Confidence 7889999999999999999999998775422 2 2345689999998 789999999999999998877 7999999999
Q ss_pred hhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 017733 88 EAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARN 167 (367)
Q Consensus 88 ~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~ 167 (367)
++||+++++||++|+++++||+|+||++.... .+..+++||+++.... ......|++||++||+++|++|++||++
T Consensus 83 ~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~--~~~~~~~ps~~~~~~~--~~~~~~p~~mt~~eI~~ii~~f~~AA~r 158 (370)
T cd02929 83 RNLAAMTDAVHKHGALAGIELWHGGAHAPNRE--SRETPLGPSQLPSEFP--TGGPVQAREMDKDDIKRVRRWYVDAALR 158 (370)
T ss_pred HHHHHHHHHHHHCCCeEEEecccCCCCCCccC--CCCCccCCCCCCCCcc--ccCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886432 3456799998764310 0013468999999999999999999999
Q ss_pred HHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCCh
Q 017733 168 AIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNP 246 (367)
Q Consensus 168 a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~ 246 (367)
|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++|||+++...+. +..+
T Consensus 159 a~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~-g~~~ 237 (370)
T cd02929 159 ARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPG-GIES 237 (370)
T ss_pred HHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCC-CCCC
Confidence 99999999999999999999999999999999999999999999999999999999977 899999986543322 2246
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCcccc------CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQL------TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~------~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 319 (367)
.+++.++++.|++. +|+++++.+.+... .....+..+++.+|+.+++||+++|++ ++++++++|++|++|+|
T Consensus 238 ~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 316 (370)
T cd02929 238 EGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLI 316 (370)
T ss_pred HHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 78889999999876 89999987653211 112224567788999999999999999 89999999999999999
Q ss_pred cccHHHHhCCchHHHHHhCC--CCCCCCCccccc
Q 017733 320 AFGRLFLANPDLPKRFELNA--PLNKYNRSTFYI 351 (367)
Q Consensus 320 ~~gR~~ladP~l~~k~~~g~--~~~~~~~~~~~~ 351 (367)
++||++++||+|++|+++|+ .+.+|-.+..|.
T Consensus 317 ~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~C~ 350 (370)
T cd02929 317 GAARPSIADPFLPKKIREGRIDDIRECIGCNICI 350 (370)
T ss_pred eechHhhhCchHHHHHHcCCccccccCCchhhhh
Confidence 99999999999999999997 355565555554
No 13
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=2.7e-78 Score=588.74 Aligned_cols=323 Identities=28% Similarity=0.378 Sum_probs=284.7
Q ss_pred CCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhh
Q 017733 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWK 91 (367)
Q Consensus 13 Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~ 91 (367)
||+|++||++||||||+|+||+..++.+|.||+.+++||++||+ |+||||+|+++|++.|+.+++++++|+|+++++||
T Consensus 1 lf~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~ 80 (353)
T cd02930 1 LLSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHR 80 (353)
T ss_pred CCCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHH
Confidence 89999999999999999999987776568899999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 017733 92 PIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEA 171 (367)
Q Consensus 92 ~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~a 171 (367)
+++++||++|+++++||+|+||++... .+++||+++... ....|++||++||++++++|++||++|++|
T Consensus 81 ~l~~~vh~~g~~~~~QL~h~G~~~~~~------~~~~ps~~~~~~-----~~~~p~~mt~~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 81 LITDAVHAEGGKIALQILHAGRYAYHP------LCVAPSAIRAPI-----NPFTPRELSEEEIEQTIEDFARCAALAREA 149 (353)
T ss_pred HHHHHHHHcCCEEEeeccCCCCCCCCC------CCcCCCCCCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999987542 458999876431 135689999999999999999999999999
Q ss_pred CCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHH
Q 017733 172 GFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALG 250 (367)
Q Consensus 172 GfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~ 250 (367)
||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||+|+.+... ++.+.+++
T Consensus 150 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~---~g~~~~e~ 226 (353)
T cd02930 150 GYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE---GGSTWEEV 226 (353)
T ss_pred CCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC---CCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 7999999854322 23467889
Q ss_pred HHHHHHhhhcCccEEEEecCCccccC-------CchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEccc
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLT-------DKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~-------~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 322 (367)
.++++.|+++|+|||+++.+....+. +...+....+.+|+.+++||+++|++ ++++++++|++|.+|+|++|
T Consensus 227 ~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 227 VALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMA 306 (353)
T ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhh
Confidence 99999999999999999754332111 11123456788999999999999999 89999999999999999999
Q ss_pred HHHHhCCchHHHHHhCCC--CCCCCCccc
Q 017733 323 RLFLANPDLPKRFELNAP--LNKYNRSTF 349 (367)
Q Consensus 323 R~~ladP~l~~k~~~g~~--~~~~~~~~~ 349 (367)
|++++||+|++|+++|+. +.+|-....
T Consensus 307 R~~l~dP~~~~k~~~g~~~~i~~Ci~cn~ 335 (353)
T cd02930 307 RPFLADPDFVAKAAAGRADEINTCIACNQ 335 (353)
T ss_pred HHHHHCccHHHHHHhCCcccCcCchhhHH
Confidence 999999999999999974 445654443
No 14
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=4.3e-77 Score=577.16 Aligned_cols=317 Identities=33% Similarity=0.470 Sum_probs=283.1
Q ss_pred CCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhh
Q 017733 13 LLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWK 91 (367)
Q Consensus 13 Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~ 91 (367)
||+|++||+++|||||+++||+++.+.||.||+.+++||++||+ |+||||+|++.|++.|+.+++++++|+|+++++||
T Consensus 1 Lf~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~ 80 (336)
T cd02932 1 LFTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALK 80 (336)
T ss_pred CCCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHH
Confidence 89999999999999999999998777899999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccCCCCCC-----------CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017733 92 PIVDAVHQKGGIIFCQIWHAGRVSNYGLQ-----------PNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVND 160 (367)
Q Consensus 92 ~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~-----------~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 160 (367)
+++++||++|+++++||+|+||++..... ..+..+++||.++... ....|++||.+||+++|++
T Consensus 81 ~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~-----~~~~p~~mt~~eI~~ii~~ 155 (336)
T cd02932 81 RIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDE-----GWPTPRELTREEIAEVVDA 155 (336)
T ss_pred HHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCC-----CCCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999875431 0134578999876432 2457899999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECA 239 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~ 239 (367)
|+++|++|+++||||||||++|||||+|||||.+|+|+|+||||++||+||++|||++||+++|++ +|+||+++.+...
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~ 235 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE 235 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987 8999999854222
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc----CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcC
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL----TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~----~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
++.+.+++.++++.|++.|+|||+++.+..... .....+.+.++.||+.+++||+++|++ |+++++++|++|
T Consensus 236 ---~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 236 ---GGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 233578899999999999999999987654321 112234567888999999999999999 899999999999
Q ss_pred CCcEEcccHHHHhCCchHHHHHh
Q 017733 315 YTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 315 ~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
.+|+|++||++++||+|++|+.+
T Consensus 313 ~aD~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 313 RADLVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred CCCeehhhHHHHhCccHHHHHhh
Confidence 99999999999999999999975
No 15
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=5.2e-77 Score=575.19 Aligned_cols=315 Identities=38% Similarity=0.593 Sum_probs=285.4
Q ss_pred CCccccCCeeeCCceeeCcCCCCcc-CCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhh
Q 017733 14 LTAYKMGQFNLSHRMVLAPLTRIRS-YNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWK 91 (367)
Q Consensus 14 f~Pl~ig~~~lkNRiv~apm~~~~~-~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~ 91 (367)
|+|++||+++|||||+++||++.++ .+|.||+.+++||++||+ |+||||+|+++|++.++.+++++++|+|+++++||
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 8999999999999999999999888 789999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 017733 92 PIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEA 171 (367)
Q Consensus 92 ~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~a 171 (367)
+++++||++|+++++||+|+||++.+.. .+..+++||+++... ....|++||.+||+++|++|+++|++|++|
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~~~~~~~s~~~~~~-----~~~~~~~mt~~ei~~~i~~~~~aA~~a~~a 153 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNL--TGGPPPAPSAIPSPG-----GGEPPREMTKEEIEQIIEDFAAAARRAKEA 153 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcC--CCCCccCCCCCCCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998655 245678999766432 246799999999999999999999999999
Q ss_pred CCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHH
Q 017733 172 GFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALG 250 (367)
Q Consensus 172 GfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~ 250 (367)
||||||||++||||++|||||.+|+|+|+||||+|||+||++|+|++||+++|++ +|+||+++.+... +..+.+++
T Consensus 154 GfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~---~g~~~~e~ 230 (327)
T cd02803 154 GFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP---GGLTLEEA 230 (327)
T ss_pred CCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC---CCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 8999999854322 12467889
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCC--------chhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTD--------KSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~--------~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
.++++.|++.|+|||+++.+....+.. .......++.+++.+++||+++|++ |+++++++|+.|.+|+|++
T Consensus 231 ~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 231 IEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 999999999999999999876543221 2334567888999999999999999 7999999999988999999
Q ss_pred cHHHHhCCchHHHHHhC
Q 017733 322 GRLFLANPDLPKRFELN 338 (367)
Q Consensus 322 gR~~ladP~l~~k~~~g 338 (367)
||++++||+|++|+++|
T Consensus 311 gR~~ladP~l~~k~~~g 327 (327)
T cd02803 311 GRALLADPDLPNKAREG 327 (327)
T ss_pred cHHHHhCccHHHHHhcC
Confidence 99999999999999876
No 16
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=3.8e-74 Score=609.31 Aligned_cols=326 Identities=30% Similarity=0.426 Sum_probs=288.2
Q ss_pred CCCccCCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHh
Q 017733 8 TTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQ 86 (367)
Q Consensus 8 ~~~~~Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~ 86 (367)
+++++||+|++||+++|||||+++||+.+.+.||.||+.+++||++||+ |+||||+|+++|++.|+.+++++++|+|++
T Consensus 394 ~~~~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~ 473 (765)
T PRK08255 394 RPPPPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQ 473 (765)
T ss_pred CCcccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHH
Confidence 4589999999999999999999999988777899999999999999998 899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHc-CCeeEEccccCCccCCCCCC---------CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 017733 87 VEAWKPIVDAVHQK-GGIIFCQIWHAGRVSNYGLQ---------PNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPK 156 (367)
Q Consensus 87 ~~~~~~l~~~vh~~-g~~~~~Ql~h~Gr~~~~~~~---------~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ 156 (367)
+++||+++++||++ |+++++||+|+||++..... ..+..+++||+++... ....|++||++||++
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~-----~~~~p~~mt~~eI~~ 548 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLP-----GSQVPREMTRADMDR 548 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCC-----CCCCCCcCCHHHHHH
Confidence 99999999999999 69999999999999864321 1223568999987542 146799999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCC
Q 017733 157 IVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPY 235 (367)
Q Consensus 157 ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~ 235 (367)
+|++|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||||+.
T Consensus 549 ~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~ 628 (765)
T PRK08255 549 VRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAH 628 (765)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 899999985
Q ss_pred ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc----CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHH
Q 017733 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL----TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKA 310 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~----~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~ 310 (367)
+ +.+ ++.+.+++.++++.|++.|+|||+|+.+..... ........+++.||+.+++||+++|++ ++++++++
T Consensus 629 ~-~~~--~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~ 705 (765)
T PRK08255 629 D-WVE--GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSI 705 (765)
T ss_pred c-ccC--CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHH
Confidence 4 321 234678899999999999999999987653211 111223567788999999999999999 89999999
Q ss_pred HHcCCCcEEcccHHHHhCCchHHHHHhCCCC
Q 017733 311 VAANYTDLVAFGRLFLANPDLPKRFELNAPL 341 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~k~~~g~~~ 341 (367)
|++|++|+|++||++++||+|+.+.......
T Consensus 706 l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~ 736 (765)
T PRK08255 706 IAAGRADLCALARPHLADPAWTLHEAAEIGY 736 (765)
T ss_pred HHcCCcceeeEcHHHHhCccHHHHHHHHcCC
Confidence 9999999999999999999999998876444
No 17
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.7e-55 Score=417.54 Aligned_cols=351 Identities=41% Similarity=0.635 Sum_probs=256.3
Q ss_pred ccCCCccccCCeeeCCceeeCcCCCCccCCCCC---CHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHh
Q 017733 11 IPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIP---QPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQ 86 (367)
Q Consensus 11 ~~Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~---t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~ 86 (367)
+.||+|+++|.+.+..|++.+||+.+.+.+..+ ...+..||.+|.. -.++||+++..+++.+-++...+++|.|++
T Consensus 7 ~~~a~~v~~g~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~ 86 (400)
T KOG0134|consen 7 PELAEPVKMGNLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQ 86 (400)
T ss_pred cccccccccccccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeeccc
Confidence 349999999999998888888887765522222 2333445555553 344555555555555555555555555555
Q ss_pred hhhhhHHHHHHHHcC-----------------CeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q 017733 87 VEAWKPIVDAVHQKG-----------------GIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPL 149 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g-----------------~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~m 149 (367)
.+.|+..+.++|+.+ ...++|+.|+|+++..... ..+++.|.+.......+.....|+.|
T Consensus 87 ~~~~~~~~~~~~e~~~~~~~ql~~~~~~~~~~~~~~~~~~h~~~q~~~~~~---p~~~~a~~v~~~~~~~~~~~~~p~~l 163 (400)
T KOG0134|consen 87 NEEWAGNVIAFHENDSFEFRQLWHLGAKLQDGALAVQQLSHAGRQTPCTVN---PTPWGASDVQLPNAIRGVEFGKPKPL 163 (400)
T ss_pred ccccCCceEEEecCCchHHHHHHHhhhhhhhhhhhHHhccCCccccccccC---CCCCCHHhccCcccccchhcCCCCCC
Confidence 555555555555444 4455555555555432211 12233333322211111234568999
Q ss_pred ChHHHHHHHH-HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcce
Q 017733 150 SIEEIPKIVN-DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 150 t~~eI~~ii~-~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i 228 (367)
|.+||.+.|. .|+.||+.+.+|||||||||++|||||+||+||.+|+|||+||||+|||+||++||+++||+++|+..+
T Consensus 164 ~~e~Ik~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~ 243 (400)
T KOG0134|consen 164 SKEQIKTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRV 243 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccc
Confidence 9999998665 555666666699999999999999999999999999999999999999999999999999999998888
Q ss_pred EEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc-----------cCCchhhHHHHHHHHHhcCCcEE
Q 017733 229 GMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ-----------LTDKSETQRSLLSMRRAFEGTFI 297 (367)
Q Consensus 229 ~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~-----------~~~~~~~~~~~~~ir~~~~~pvi 297 (367)
++|+++..++.+. ..+.|+...+|..++..|+|++.++.+.+.. ......+..+.+.++..++.+|+
T Consensus 244 ~l~~~~~~~fq~~--~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v 321 (400)
T KOG0134|consen 244 FLRGSPTNEFQDI--GITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVV 321 (400)
T ss_pred eEEecCchhhhhc--cccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEE
Confidence 8888885445433 2346677889999999999977775443211 11223345677889999999977
Q ss_pred EeCC--CCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCCCCCCCCCcccccCCCCCCcccCCCCcC
Q 017733 298 AAGG--YSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPLNKYNRSTFYIPDPVVGYTDYPFLKL 366 (367)
Q Consensus 298 ~~Gg--it~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (367)
..|| .|++.+.++++.|..|+|++||.+++|||||.|++.|.++|++++++++.+++..||++++.+.+
T Consensus 322 ~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~~~~n~~d~~t~~~~~~~~g~~~~~~~~~ 392 (400)
T KOG0134|consen 322 YAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNGLPLNKYDRSTFYTDMAVKGYADYPQMEQ 392 (400)
T ss_pred EecCCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhCCCcccccccccccccchhccccChhHHH
Confidence 6663 39999999999999999999999999999999999999999999999998899999999997754
No 18
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.5e-31 Score=257.35 Aligned_cols=235 Identities=19% Similarity=0.205 Sum_probs=182.3
Q ss_pred cCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHHHH
Q 017733 19 MGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVH 98 (367)
Q Consensus 19 ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~vh 98 (367)
||++.++|++++|||... |+...+...++. |+++++||.+..... .+ ..+ ..+++. ..+
T Consensus 1 ~~~~~~~~~l~lAPm~~~-------t~~~fR~l~~~~-g~~~~~temi~~~~l--~~-------~~~---~~~~~~-~~~ 59 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGV-------TDSPFRRLVAEY-GAGLTVCEMVSSEAI--VY-------DSQ---RTMRLL-DIA 59 (319)
T ss_pred CCCccCCCCEEecCCCCC-------CcHHHHHHHHHH-CCCEEEECCEEEhhh--hc-------CCH---HHHHHh-hcC
Confidence 588999999999999665 555433333333 689999997755422 11 111 112222 124
Q ss_pred HcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEE
Q 017733 99 QKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEI 178 (367)
Q Consensus 99 ~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei 178 (367)
..+.++++||.. ..| ++|+++|++++++|||+|||
T Consensus 60 ~~~~p~i~ql~g---------------------------------~~~------------~~~~~aa~~~~~~G~d~Iel 94 (319)
T TIGR00737 60 EDETPISVQLFG---------------------------------SDP------------DTMAEAAKINEELGADIIDI 94 (319)
T ss_pred CccceEEEEEeC---------------------------------CCH------------HHHHHHHHHHHhCCCCEEEE
Confidence 567789999942 112 58999999999999999999
Q ss_pred ecccchHHHhhcCcccccCCCCCCCc-hhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHh
Q 017733 179 HGANGYLIDQFMKDQVNDRTDEYGGS-LENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKAL 257 (367)
Q Consensus 179 ~~~~gyLl~qFlsp~~N~R~D~yGgs-~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L 257 (367)
|+|| | .|+|+|+|||+ +.+|++++.+|+++||++++ .+|.||++.. + .....+..++++.|
T Consensus 95 N~gc---------P-~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g--~-----~~~~~~~~~~a~~l 156 (319)
T TIGR00737 95 NMGC---------P-VPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIG--W-----DDAHINAVEAARIA 156 (319)
T ss_pred ECCC---------C-HHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEcc--c-----CCCcchHHHHHHHH
Confidence 9998 7 79999999998 68999999999999999996 5889998752 1 11122356799999
Q ss_pred hhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 258 NKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 258 ~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
++.|+|+|++|.++....+..+...+.++.+++.+++||+++|++ |+++++++++.+.||+|++||++++||+|+++++
T Consensus 157 ~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~ 236 (319)
T TIGR00737 157 EDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIE 236 (319)
T ss_pred HHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHH
Confidence 999999999987654433444556788999999999999999999 8999999997777999999999999999999987
Q ss_pred h
Q 017733 337 L 337 (367)
Q Consensus 337 ~ 337 (367)
+
T Consensus 237 ~ 237 (319)
T TIGR00737 237 Q 237 (319)
T ss_pred H
Confidence 5
No 19
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.97 E-value=7.8e-31 Score=241.00 Aligned_cols=162 Identities=22% Similarity=0.169 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
++|+++|++++++|||+||||++| |..|.|+|+|||++++|++++.|++++||++++ .++.||++...
T Consensus 67 ~~~~~aa~~~~~aG~d~ieln~g~---------p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~-- 134 (231)
T cd02801 67 ETLAEAAKIVEELGADGIDLNMGC---------PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGW-- 134 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCC---------CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeecc--
Confidence 689999999999999999999998 889999999999999999999999999999997 56777776521
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTD 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 317 (367)
.. .+++.++++.|++.|+|+|+++.++.......+.....++.+++.+++||+++|++ ++++++++++.+.+|
T Consensus 135 -----~~-~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad 208 (231)
T cd02801 135 -----DD-EEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVD 208 (231)
T ss_pred -----CC-chHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCC
Confidence 11 14678899999999999999988764332333446677888999999999999999 899999999997799
Q ss_pred EEcccHHHHhCCchHHHHHhC
Q 017733 318 LVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 318 ~V~~gR~~ladP~l~~k~~~g 338 (367)
+|++||++++||+|++|+++.
T Consensus 209 ~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 209 GVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred EEEEcHHhHhCCHHHHhhhhc
Confidence 999999999999999999875
No 20
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.97 E-value=3.4e-30 Score=245.95 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC-C-chhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-G-SLENRCRFALEVVEAVVREIGAE-RVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-g-s~enr~r~~~eii~aiR~~vg~~-~i~vrls~~ 235 (367)
+.|+++|++++++|||+||||+||. +|..| ++| | .+++|++++.+|+++||++++++ +|.||++..
T Consensus 75 ~~~~~aA~~~~~~g~d~IdiN~GCP-------~~~v~----~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g 143 (312)
T PRK10550 75 QWLAENAARAVELGSWGVDLNCGCP-------SKTVN----GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG 143 (312)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC-------chHHh----cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC
Confidence 5799999999999999999999993 23333 344 3 69999999999999999999865 899999872
Q ss_pred ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh-hHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHc
Q 017733 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE-TQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAA 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~-~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~ 313 (367)
+ +..+++.++++.++++|+|+|+||.++..+.+..+. +++.++.+|+.+++||++||++ |+++++++|+.
T Consensus 144 --~------~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 144 --W------DSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred --C------CCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 1 123447799999999999999999887665555443 6788999999999999999999 89999999998
Q ss_pred CCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 314 NYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 314 G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
+.||+|++||++++||+|++++++|.
T Consensus 216 ~g~DgVmiGRg~l~nP~lf~~~~~g~ 241 (312)
T PRK10550 216 TGCDAVMIGRGALNIPNLSRVVKYNE 241 (312)
T ss_pred cCCCEEEEcHHhHhCcHHHHHhhcCC
Confidence 88999999999999999999999875
No 21
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.96 E-value=1.9e-28 Score=236.42 Aligned_cols=230 Identities=16% Similarity=0.166 Sum_probs=173.7
Q ss_pred eeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCC-eeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHHHHHcC
Q 017733 23 NLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNG-GFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKG 101 (367)
Q Consensus 23 ~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~-Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~vh~~g 101 (367)
.-+|++++|||.+. |+...+...+.- |+ ++++||.+.+.. .... . .+++.. .+...
T Consensus 8 ~~~~~~~lAPM~g~-------td~~fR~~~~~~-g~~~~~~temv~~~~--l~~~--------~----~~~~l~-~~~~e 64 (333)
T PRK11815 8 LPSRRFSVAPMMDW-------TDRHCRYFHRLL-SRHALLYTEMVTTGA--IIHG--------D----RERLLA-FDPEE 64 (333)
T ss_pred CCCCCEEEeCCCCC-------cCHHHHHHHHHh-CCCCEEEECCEEecc--cccc--------C----HHHHhc-cCCCC
Confidence 34689999999765 565533333333 45 899999775542 2111 1 111111 13455
Q ss_pred CeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecc
Q 017733 102 GIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGA 181 (367)
Q Consensus 102 ~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~ 181 (367)
.++++||.- ..| +.|+++|++++++|||+||||+|
T Consensus 65 ~p~~vQl~g---------------------------------~~p------------~~~~~aA~~~~~~g~d~IdlN~g 99 (333)
T PRK11815 65 HPVALQLGG---------------------------------SDP------------ADLAEAAKLAEDWGYDEINLNVG 99 (333)
T ss_pred CcEEEEEeC---------------------------------CCH------------HHHHHHHHHHHhcCCCEEEEcCC
Confidence 688899842 122 68999999999999999999999
Q ss_pred cchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcC
Q 017733 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFK 261 (367)
Q Consensus 182 ~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~G 261 (367)
| |..|.|+|+||+++++|++++.+|++++|++++ .+|.||++.. +. +.++.+++.++++.++++|
T Consensus 100 C---------P~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~-~pVsvKiR~g--~~---~~~t~~~~~~~~~~l~~aG 164 (333)
T PRK11815 100 C---------PSDRVQNGRFGACLMAEPELVADCVKAMKDAVS-IPVTVKHRIG--ID---DQDSYEFLCDFVDTVAEAG 164 (333)
T ss_pred C---------CHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC-CceEEEEEee--eC---CCcCHHHHHHHHHHHHHhC
Confidence 8 899999999999999999999999999999984 4777766542 11 1234566789999999999
Q ss_pred ccEEEEecCCcc-ccCC-------chhhHHHHHHHHHhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCch
Q 017733 262 LLYLHVIEPRMI-QLTD-------KSETQRSLLSMRRAF-EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDL 331 (367)
Q Consensus 262 vd~i~v~~~~~~-~~~~-------~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l 331 (367)
+|+|++|.++.. +.+. .+..+..++.+++.+ ++|||++|++ |+++++++++ + ||+|++||+++.||++
T Consensus 165 ~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~-aDgVmIGRa~l~nP~~ 242 (333)
T PRK11815 165 CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-H-VDGVMIGRAAYHNPYL 242 (333)
T ss_pred CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-c-CCEEEEcHHHHhCCHH
Confidence 999999976531 1111 223567788899986 8999999999 8999999997 5 9999999999999999
Q ss_pred HHHHHh
Q 017733 332 PKRFEL 337 (367)
Q Consensus 332 ~~k~~~ 337 (367)
++++++
T Consensus 243 ~~~~~~ 248 (333)
T PRK11815 243 LAEVDR 248 (333)
T ss_pred HHHHHH
Confidence 999876
No 22
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.96 E-value=1.1e-27 Score=230.06 Aligned_cols=237 Identities=16% Similarity=0.226 Sum_probs=177.1
Q ss_pred cccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHH
Q 017733 17 YKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDA 96 (367)
Q Consensus 17 l~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 96 (367)
++||+++++|++++|||.+. |+..++...+.. |+++++||.+...+. . +..+. ...++.
T Consensus 1 ~~i~~~~~~~~~~lAPM~g~-------td~~fR~l~~~~-g~~~~~temvs~~~~--~-------~~~~~--~~~~~~-- 59 (321)
T PRK10415 1 MRIGQYQLRNRLIAAPMAGI-------TDRPFRTLCYEM-GAGLTVSEMMSSNPQ--V-------WESDK--SRLRMV-- 59 (321)
T ss_pred CccCCccCCCCEEecCCCCC-------CcHHHHHHHHHH-CCCEEEEccEEcchh--h-------hcCHh--HHHHhc--
Confidence 36899999999999999665 566544444433 689999996655422 1 11110 011111
Q ss_pred HHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEE
Q 017733 97 VHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGV 176 (367)
Q Consensus 97 vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgV 176 (367)
......++++||.- ..| +.|+++|+++++.|||+|
T Consensus 60 ~~~~~~~~~vQl~g---------------------------------~~~------------~~~~~aa~~~~~~g~d~I 94 (321)
T PRK10415 60 HIDEPGIRTVQIAG---------------------------------SDP------------KEMADAARINVESGAQII 94 (321)
T ss_pred cCccCCCEEEEEeC---------------------------------CCH------------HHHHHHHHHHHHCCCCEE
Confidence 11222456788831 122 578999999999999999
Q ss_pred EEecccchHHHhhcCcccccCCCCCCC-chhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHH
Q 017733 177 EIHGANGYLIDQFMKDQVNDRTDEYGG-SLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAK 255 (367)
Q Consensus 177 ei~~~~gyLl~qFlsp~~N~R~D~yGg-s~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~ 255 (367)
|||+|| |. .+.+..++| .+.+++.++.+++++||++++ .+|.+|++.. + ....+++.++++
T Consensus 95 dlN~gC---------P~-~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d-~pv~vKiR~G--~-----~~~~~~~~~~a~ 156 (321)
T PRK10415 95 DINMGC---------PA-KKVNRKLAGSALLQYPDLVKSILTEVVNAVD-VPVTLKIRTG--W-----APEHRNCVEIAQ 156 (321)
T ss_pred EEeCCC---------CH-HHHcCCCcccHHhcCHHHHHHHHHHHHHhcC-CceEEEEEcc--c-----cCCcchHHHHHH
Confidence 999999 54 244555555 588999999999999999983 4788888752 1 122345778999
Q ss_pred HhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHH
Q 017733 256 ALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 256 ~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
.++++|+|+|++|.++..+.+.....++.++.+++.+++|||++|++ |+++++++++.+.||+|++||+++.||+++.+
T Consensus 157 ~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~ 236 (321)
T PRK10415 157 LAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFRE 236 (321)
T ss_pred HHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHH
Confidence 99999999999998875555544456788999999999999999999 89999999987679999999999999999999
Q ss_pred HHh
Q 017733 335 FEL 337 (367)
Q Consensus 335 ~~~ 337 (367)
+++
T Consensus 237 ~~~ 239 (321)
T PRK10415 237 IQH 239 (321)
T ss_pred HHH
Confidence 875
No 23
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.95 E-value=6.9e-27 Score=223.23 Aligned_cols=245 Identities=15% Similarity=0.106 Sum_probs=182.9
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCC-C----------CCCCCCcCCCH
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTA-Q----------GYPNTPGIWTK 84 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g-~----------~~~~~~~~~~~ 84 (367)
+++++|++|||+|++||+... . +++.++.+.+. |+|.|+++.+...+.- . ...+..++.++
T Consensus 2 ~~~~~g~~l~npi~~aag~~~-----~-~~~~~~~~~~~--G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~ 73 (300)
T TIGR01037 2 EVELFGIRFKNPLILASGIMG-----S-GVESLRRIDRS--GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP 73 (300)
T ss_pred cEEECCEECCCCCEeCCcCCC-----C-CHHHHHHHHHc--CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc
Confidence 467899999999999996321 1 66665543332 7999999877766431 1 12233455565
Q ss_pred HhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017733 85 EQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLA 164 (367)
Q Consensus 85 ~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~a 164 (367)
..-..++.+....|+.+.++++||+- .. .++|+++
T Consensus 74 g~~~~~~~~~~~~~~~~~pl~~qi~g---------------------------------~~------------~~~~~~~ 108 (300)
T TIGR01037 74 GVEAFLEELKPVREEFPTPLIASVYG---------------------------------SS------------VEEFAEV 108 (300)
T ss_pred CHHHHHHHHHHHhccCCCcEEEEeec---------------------------------CC------------HHHHHHH
Confidence 44455666777778888899999941 01 1578899
Q ss_pred HHHHHHhC--CCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 165 ARNAIEAG--FDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 165 A~~a~~aG--fdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
|+.+.+++ +|+||||++| |.+|.|.+. +.++.+++.|++++||++++ .+|.||++++
T Consensus 109 a~~~~~~~~~~d~ielN~~c---------P~~~~~g~~----l~~~~~~~~eiv~~vr~~~~-~pv~vKi~~~------- 167 (300)
T TIGR01037 109 AEKLEKAPPYVDAYELNLSC---------PHVKGGGIA----IGQDPELSADVVKAVKDKTD-VPVFAKLSPN------- 167 (300)
T ss_pred HHHHHhccCccCEEEEECCC---------CCCCCCccc----cccCHHHHHHHHHHHHHhcC-CCEEEECCCC-------
Confidence 99988874 9999999999 777654444 44567799999999999983 5899999862
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccc----------------cCCchh----hHHHHHHHHHhcCCcEEEeCCC
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ----------------LTDKSE----TQRSLLSMRRAFEGTFIAAGGY 302 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~----------------~~~~~~----~~~~~~~ir~~~~~pvi~~Ggi 302 (367)
.++..++++.++++|+|+|+++...... ..+.+. ....+..+++.+++|||++||+
T Consensus 168 ----~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI 243 (300)
T TIGR01037 168 ----VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGI 243 (300)
T ss_pred ----hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCC
Confidence 2456789999999999999997432110 001111 2356778899999999999999
Q ss_pred -CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 303 -SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 303 -t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
|+++++++|+.| +|+|++||+++.||+|+++++++.
T Consensus 244 ~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 244 TSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred CCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHH
Confidence 899999999998 999999999999999999999873
No 24
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.9e-26 Score=221.01 Aligned_cols=238 Identities=20% Similarity=0.193 Sum_probs=184.1
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCC-eeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHH
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNG-GFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIV 94 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~-Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~ 94 (367)
+++++.+.++||+++|||.+. ||...++..+.- |+ ++.+||.+.....-.+.... ++.+-
T Consensus 1 ~~~~~~~~~~~~~~lAPM~gv-------td~~fR~l~~~~-ga~~~~~TEmv~~~~~~~~~~~~-----------~~~~~ 61 (323)
T COG0042 1 MLKIGLIELRNRVILAPMAGV-------TDLPFRRLAREL-GAYDLLYTEMVSAKALLHGRKKF-----------LLLLD 61 (323)
T ss_pred CCccccccccCcEEEecCCCC-------ccHHHHHHHHHh-CCCceEEEccEEEhhhccCCcch-----------hhhcC
Confidence 467899999999999999776 677644444443 56 99999976655432221111 11110
Q ss_pred HHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 017733 95 DAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFD 174 (367)
Q Consensus 95 ~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfd 174 (367)
.. ....++.+||.- ..| +.+++||+.+.+.|+|
T Consensus 62 ~~--~~e~p~~vQl~g---------------------------------sdp------------~~l~eaA~~~~~~g~~ 94 (323)
T COG0042 62 EL--EEERPVAVQLGG---------------------------------SDP------------ELLAEAAKIAEELGAD 94 (323)
T ss_pred cC--CCCCCEEEEecC---------------------------------CCH------------HHHHHHHHHHHhcCCC
Confidence 00 234568888842 123 4679999999999999
Q ss_pred EEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHH
Q 017733 175 GVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMA 254 (367)
Q Consensus 175 gVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~ 254 (367)
+|+||+|| |.-.-....+|..|...+.++.+||+++++++++-||.||++.. +.+..-.+..++
T Consensus 95 ~IdlN~GC---------P~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG-------~d~~~~~~~~ia 158 (323)
T COG0042 95 IIDLNCGC---------PSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLG-------WDDDDILALEIA 158 (323)
T ss_pred EEeeeCCC---------ChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecc-------cCcccccHHHHH
Confidence 99999999 65544455566679999999999999999999833777777762 111112356799
Q ss_pred HHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchH
Q 017733 255 KALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLP 332 (367)
Q Consensus 255 ~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~ 332 (367)
+.+++.|++.++||.++..+.+..+.+++.++.+|+.++ +|||+||++ |+++|.++|+.+.||.||+||+++.||++.
T Consensus 159 ~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~ 238 (323)
T COG0042 159 RILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLF 238 (323)
T ss_pred HHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHH
Confidence 999999999999999998888877788999999999999 999999999 999999999998899999999999999999
Q ss_pred HHH
Q 017733 333 KRF 335 (367)
Q Consensus 333 ~k~ 335 (367)
+.+
T Consensus 239 ~~i 241 (323)
T COG0042 239 RQI 241 (323)
T ss_pred HHH
Confidence 984
No 25
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.95 E-value=1.3e-25 Score=214.06 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=179.1
Q ss_pred cccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCC-CCCC----------CCCcCCCHH
Q 017733 17 YKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTA-QGYP----------NTPGIWTKE 85 (367)
Q Consensus 17 l~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g-~~~~----------~~~~~~~~~ 85 (367)
.++.|++|+|.|+.++= .++ +...+..+.+.. |+|.|+++.+...+.- ...+ +..++.++.
T Consensus 2 ~~~~G~~~~nP~~~aag-----~~~--~~~~~~~~~~~g-~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g 73 (296)
T cd04740 2 VELAGLRLKNPVILASG-----TFG--FGEELSRVADLG-KLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPG 73 (296)
T ss_pred eEECCEEcCCCCEECCC-----CCC--CHHHHHHHHhcC-CceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcC
Confidence 57889999999999842 122 334333332222 4899999977665432 1111 122444443
Q ss_pred hhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 017733 86 QVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAA 165 (367)
Q Consensus 86 ~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA 165 (367)
.-..++++.+..++.+.++++||... . +++|+++|
T Consensus 74 ~~~~~~~~~~~~~~~~~p~ivsi~g~---------------------------------~------------~~~~~~~a 108 (296)
T cd04740 74 VEAFLEELLPWLREFGTPVIASIAGS---------------------------------T------------VEEFVEVA 108 (296)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEecC---------------------------------C------------HHHHHHHH
Confidence 34555666666666788999999520 0 37899999
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~ 245 (367)
++++++|||+||||.+| |.+|+|.+.||+ +.+++.|++++||+++ +.||.+|++++
T Consensus 109 ~~~~~~G~d~iElN~~c---------P~~~~~g~~~~~----~~~~~~eiv~~vr~~~-~~Pv~vKl~~~---------- 164 (296)
T cd04740 109 EKLADAGADAIELNISC---------PNVKGGGMAFGT----DPEAVAEIVKAVKKAT-DVPVIVKLTPN---------- 164 (296)
T ss_pred HHHHHcCCCEEEEECCC---------CCCCCCcccccC----CHHHHHHHHHHHHhcc-CCCEEEEeCCC----------
Confidence 99999999999999765 888887666665 4689999999999998 35899999873
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCcc----c----c--------CC----chhhHHHHHHHHHhcCCcEEEeCCC-CH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMI----Q----L--------TD----KSETQRSLLSMRRAFEGTFIAAGGY-SR 304 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~----~----~--------~~----~~~~~~~~~~ir~~~~~pvi~~Ggi-t~ 304 (367)
.++..++++.+++.|+|.|.++..... . + .+ .+....+++.+++.+++|||++||+ ++
T Consensus 165 -~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 165 -VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred -chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 124667899999999999987542110 0 0 01 1123467788999999999999999 89
Q ss_pred HHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 305 DEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 305 ~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
+++.++|+.| +|+|+++|++++||+++++++++.
T Consensus 244 ~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l 277 (296)
T cd04740 244 EDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGL 277 (296)
T ss_pred HHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHH
Confidence 9999999999 999999999999999999999874
No 26
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.95 E-value=4.2e-26 Score=218.22 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=172.7
Q ss_pred CceeeCcCCCCccCCCCCCHHHHHHHHhhcCCC-eeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHHHHHcCCee
Q 017733 26 HRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNG-GFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGII 104 (367)
Q Consensus 26 NRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~-Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~vh~~g~~~ 104 (367)
+|+++|||.+. |+..++...++- |+ ++.+||.+.+.. .... ... ++. ..+....++
T Consensus 1 ~~~~lAPM~g~-------Td~~fR~l~~~~-g~~~~~~TEMv~a~~--l~~~-------~~~-----~~l-~~~~~e~p~ 57 (318)
T TIGR00742 1 GRFSVAPMLDW-------TDRHFRYFLRLL-SKHTLLYTEMITAKA--IIHG-------DKK-----DIL-KFSPEESPV 57 (318)
T ss_pred CCEEEECCCCC-------cCHHHHHHHHHh-CCCCEEEeCCEEEhh--hhcc-------CHH-----HHc-ccCCCCCcE
Confidence 68999999766 666533333322 55 899999776542 2111 111 111 123445678
Q ss_pred EEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccch
Q 017733 105 FCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGY 184 (367)
Q Consensus 105 ~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gy 184 (367)
++||+- ..| +.|+++|+++.++|||+|+||+||
T Consensus 58 ~vQl~g---------------------------------~~p------------~~~~~aA~~~~~~g~d~IDlN~GC-- 90 (318)
T TIGR00742 58 ALQLGG---------------------------------SDP------------NDLAKCAKIAEKRGYDEINLNVGC-- 90 (318)
T ss_pred EEEEcc---------------------------------CCH------------HHHHHHHHHHHhCCCCEEEEECCC--
Confidence 888842 122 578999999999999999999999
Q ss_pred HHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccE
Q 017733 185 LIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLY 264 (367)
Q Consensus 185 Ll~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~ 264 (367)
|..+.+.+.||+.+.++++++.++|+++|++++ .||.||++... . ..++.+++.++++.++++|++.
T Consensus 91 -------P~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~-~PVsvKiR~g~--~---~~~~~~~~~~~~~~l~~~G~~~ 157 (318)
T TIGR00742 91 -------PSDRVQNGNFGACLMGNADLVADCVKAMQEAVN-IPVTVKHRIGI--D---PLDSYEFLCDFVEIVSGKGCQN 157 (318)
T ss_pred -------CHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC-CCeEEEEecCC--C---CcchHHHHHHHHHHHHHcCCCE
Confidence 888899999999999999999999999999985 48888887631 1 1123466789999999999999
Q ss_pred EEEecCCc-cccCC-------chhhHHHHHHHHHhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHH
Q 017733 265 LHVIEPRM-IQLTD-------KSETQRSLLSMRRAF-EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 265 i~v~~~~~-~~~~~-------~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
|.+|.++. .+.++ .+..+..+..+++.+ ++|||+||++ |++++++++. | ||.||+||+++.||+++.+
T Consensus 158 itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g-~dgVMigRgal~nP~if~~ 235 (318)
T TIGR00742 158 FIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-H-VDGVMVGREAYENPYLLAN 235 (318)
T ss_pred EEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-C-CCEEEECHHHHhCCHHHHH
Confidence 99998874 22221 222456778899988 7999999999 8999999995 5 9999999999999999999
Q ss_pred HHh
Q 017733 335 FEL 337 (367)
Q Consensus 335 ~~~ 337 (367)
+.+
T Consensus 236 ~~~ 238 (318)
T TIGR00742 236 VDR 238 (318)
T ss_pred HHH
Confidence 875
No 27
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.93 E-value=1.5e-24 Score=207.24 Aligned_cols=242 Identities=17% Similarity=0.118 Sum_probs=175.0
Q ss_pred ccccCCeeeCCceeeCcC-CCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCC-CCCC----------CCCcCC
Q 017733 16 AYKMGQFNLSHRMVLAPL-TRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTA-QGYP----------NTPGIW 82 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm-~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g-~~~~----------~~~~~~ 82 (367)
+.++.|++|+|.|+.++= ... +.+.+. ..+. |+|.|++..+..++.. ...+ +..++.
T Consensus 3 ~~~~~G~~~~nPv~~aag~~~~-------~~~~~~---~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~ 72 (301)
T PRK07259 3 SVELPGLKLKNPVMPASGTFGF-------GGEYAR---FYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQ 72 (301)
T ss_pred ceEECCEECCCCcEECCcCCCC-------CHHHHH---HhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCC
Confidence 467889999999999873 322 334333 3333 7999999977665431 1111 112222
Q ss_pred CHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017733 83 TKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFR 162 (367)
Q Consensus 83 ~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~ 162 (367)
+...-..++++....++.+.++++||.- .. .++|+
T Consensus 73 ~~g~~~~~~~~~~~~~~~~~p~i~si~g---------------------------------~~------------~~~~~ 107 (301)
T PRK07259 73 NPGVDAFIEEELPWLEEFDTPIIANVAG---------------------------------ST------------EEEYA 107 (301)
T ss_pred CcCHHHHHHHHHHHHhccCCcEEEEecc---------------------------------CC------------HHHHH
Confidence 2222223444545555567889999931 01 26899
Q ss_pred HHHHHHHHhC-CCEEEEecccchHHHhhcCcccccCCCCC-CCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 163 LAARNAIEAG-FDGVEIHGANGYLIDQFMKDQVNDRTDEY-GGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 163 ~aA~~a~~aG-fdgVei~~~~gyLl~qFlsp~~N~R~D~y-Ggs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
++|++++++| ||+||||++| |+. .. |..+.++.+++.|++++||+++ +.+|.+|++++
T Consensus 108 ~~a~~~~~aG~~D~iElN~~c---------P~~-----~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~----- 167 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISC---------PNV-----KHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPN----- 167 (301)
T ss_pred HHHHHHhccCCcCEEEEECCC---------CCC-----CCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCC-----
Confidence 9999999999 9999999988 432 23 3357788999999999999998 35899999973
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccc--------------------cCCchhhHHHHHHHHHhcCCcEEEeC
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ--------------------LTDKSETQRSLLSMRRAFEGTFIAAG 300 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~--------------------~~~~~~~~~~~~~ir~~~~~pvi~~G 300 (367)
.++..++++.++++|+|.|+++...... +...+.....++.+++.+++||+++|
T Consensus 168 ------~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~G 241 (301)
T PRK07259 168 ------VTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMG 241 (301)
T ss_pred ------chhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEEC
Confidence 2356789999999999999875422110 00012235677889999999999999
Q ss_pred CC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 301 GY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 301 gi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
|+ |+++++++|+.| +|+|+++|++++||++++++++|.
T Consensus 242 GI~~~~da~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 242 GISSAEDAIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred CCCCHHHHHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHH
Confidence 99 899999999999 999999999999999999999874
No 28
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.91 E-value=1.9e-22 Score=191.67 Aligned_cols=242 Identities=16% Similarity=0.184 Sum_probs=174.5
Q ss_pred ccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCC-CCCCCC-------------------
Q 017733 18 KMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNT-AQGYPN------------------- 77 (367)
Q Consensus 18 ~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~-g~~~~~------------------- 77 (367)
++.|++|+|.|+.++-.... +.++++++.+ + |+|.+++..+...+. |...++
T Consensus 2 ~~~G~~~~nPv~~aag~~~~------~~~~~~~~~~-~-g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n 73 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLLK------TGELIARAAA-A-GFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILN 73 (289)
T ss_pred eECCEECCCCCEeCCCCCCC------CHHHHHHHHH-c-CCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEee
Confidence 57799999999999885421 3444443332 2 688888886665432 222111
Q ss_pred CCcCCCHHhhhhhhHHHHHHHH--cCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHH
Q 017733 78 TPGIWTKEQVEAWKPIVDAVHQ--KGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIP 155 (367)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~vh~--~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~ 155 (367)
..++-+ .-++.|.+.....++ .+.++++||... .
T Consensus 74 ~~g~~~-~g~~~~~~~i~~~~~~~~~~pvi~si~g~---------------------------------~---------- 109 (289)
T cd02810 74 SFGLPN-LGLDVWLQDIAKAKKEFPGQPLIASVGGS---------------------------------S---------- 109 (289)
T ss_pred cCCCCC-cCHHHHHHHHHHHHhccCCCeEEEEeccC---------------------------------C----------
Confidence 112222 234445444444444 478899998431 0
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCC
Q 017733 156 KIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235 (367)
Q Consensus 156 ~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~ 235 (367)
.++|.++|+++.++|+|+||||++| |..+. +..+.++.+++.+++++||+++ +.+|.+|+++.
T Consensus 110 --~~~~~~~a~~~~~~G~d~ielN~~c---------P~~~~-----~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~ 172 (289)
T cd02810 110 --KEDYVELARKIERAGAKALELNLSC---------PNVGG-----GRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPY 172 (289)
T ss_pred --HHHHHHHHHHHHHhCCCEEEEEcCC---------CCCCC-----CcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCC
Confidence 1578999999999999999999998 55443 2336788999999999999998 35899999983
Q ss_pred ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc-------------C---Cc----hhhHHHHHHHHHhc--C
Q 017733 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL-------------T---DK----SETQRSLLSMRRAF--E 293 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~-------------~---~~----~~~~~~~~~ir~~~--~ 293 (367)
.+.++..++++.++++|+|+|+++.+..... . +. +....+++.+++.+ +
T Consensus 173 ---------~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ 243 (289)
T cd02810 173 ---------FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLD 243 (289)
T ss_pred ---------CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCC
Confidence 2356688899999999999999976432100 0 00 11345678899998 7
Q ss_pred CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 294 GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 294 ~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
+||+++||+ |++++.++|+.| +|+|++||+++.| |+++++++++
T Consensus 244 ipiia~GGI~~~~da~~~l~~G-Ad~V~vg~a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 244 IPIIGVGGIDSGEDVLEMLMAG-ASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred CCEEEECCCCCHHHHHHHHHcC-ccHheEcHHHHhcCccHHHHHhcC
Confidence 999999999 799999999999 9999999999999 9999999863
No 29
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.89 E-value=2.8e-23 Score=198.71 Aligned_cols=165 Identities=20% Similarity=0.224 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+.+++||+++.+.|+|+|+||+|| |..-.....+|..|...+..+.++|+++|++++ .+|.||++..
T Consensus 66 ~~~~~aa~~~~~~~~~~IDlN~GC---------P~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~g--- 132 (309)
T PF01207_consen 66 EDLAEAAEIVAELGFDGIDLNMGC---------PAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRLG--- 132 (309)
T ss_dssp HHHHHHHHHHCCTT-SEEEEEE------------SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEESE---
T ss_pred HHHHHHHHhhhccCCcEEeccCCC---------CHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEecccc---
Confidence 688999999999999999999999 444344456888899999999999999999997 5777777652
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTD 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 317 (367)
..++.+++.++++.|+++|+++|.||.++..+.+..+.+++.++.+++.+++||++||++ |+++++++++...+|
T Consensus 133 ----~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~d 208 (309)
T PF01207_consen 133 ----WDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGAD 208 (309)
T ss_dssp ----CT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SS
T ss_pred ----cccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCc
Confidence 123456788999999999999999999988777777888899999999999999999999 899999999985699
Q ss_pred EEcccHHHHhCCchHH---HHHhCCC
Q 017733 318 LVAFGRLFLANPDLPK---RFELNAP 340 (367)
Q Consensus 318 ~V~~gR~~ladP~l~~---k~~~g~~ 340 (367)
.||+||+++.||++++ .+..|..
T Consensus 209 gvMigRgal~nP~lf~~~~~~~~~~~ 234 (309)
T PF01207_consen 209 GVMIGRGALGNPWLFREIDQIKEGEP 234 (309)
T ss_dssp EEEESHHHCC-CCHHCHHHCHHHHTT
T ss_pred EEEEchhhhhcCHHhhhhhhhccCCC
Confidence 9999999999999999 5555543
No 30
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.86 E-value=1e-20 Score=173.77 Aligned_cols=225 Identities=12% Similarity=0.103 Sum_probs=160.3
Q ss_pred ceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCC------CCCCcCCCHHhhhhhhHHHHHHHHc
Q 017733 27 RMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGY------PNTPGIWTKEQVEAWKPIVDAVHQK 100 (367)
Q Consensus 27 Riv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~------~~~~~~~~~~~~~~~~~l~~~vh~~ 100 (367)
+++++||.+. |+.- |-+..+..+|+.+.++...+...... .+..-+..+...+.+++....++..
T Consensus 1 ~~~lApMag~-------td~~--f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~ 71 (233)
T cd02911 1 PVALASMAGI-------TDGD--FCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDS 71 (233)
T ss_pred CceeeecCCC-------cCHH--HHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhcc
Confidence 5789999654 3332 33335545778888777654221100 0001122333667777777777888
Q ss_pred CCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEec
Q 017733 101 GGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHG 180 (367)
Q Consensus 101 g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~ 180 (367)
+.++++||.. ..| +.++++|+++.+ ++|+||||+
T Consensus 72 ~~p~~vqi~g---------------------------------~~~------------~~~~~aa~~~~~-~~~~ielN~ 105 (233)
T cd02911 72 NVLVGVNVRS---------------------------------SSL------------EPLLNAAALVAK-NAAILEINA 105 (233)
T ss_pred CCeEEEEecC---------------------------------CCH------------HHHHHHHHHHhh-cCCEEEEEC
Confidence 8999999942 112 567899998877 469999999
Q ss_pred ccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhc
Q 017733 181 ANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKF 260 (367)
Q Consensus 181 ~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~ 260 (367)
+| |........+|..+...+..+.+++++||+ + ..+|.||+++. . + ++..++++.++++
T Consensus 106 gC---------P~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~-~~pVsvKir~g--------~-~-~~~~~la~~l~~a 164 (233)
T cd02911 106 HC---------RQPEMVEAGAGEALLKDPERLSEFIKALKE-T-GVPVSVKIRAG--------V-D-VDDEELARLIEKA 164 (233)
T ss_pred CC---------CcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c-CCCEEEEEcCC--------c-C-cCHHHHHHHHHHh
Confidence 99 443333445566788889999999999998 4 35899999983 1 1 3466799999999
Q ss_pred CccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 261 KLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 261 Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
|+|+||++..... .......++.++ +++|||++|++ |+++++++++.| +|+|++||+ .||++++.+.
T Consensus 165 G~d~ihv~~~~~g----~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~--~~p~~~~~~~ 232 (233)
T cd02911 165 GADIIHVDAMDPG----NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA--SLPENIEWLV 232 (233)
T ss_pred CCCEEEECcCCCC----CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC--CCchHHHHhh
Confidence 9999998644211 123445555555 68999999999 899999999988 999999999 9999998775
No 31
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.86 E-value=3.3e-20 Score=180.02 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=168.0
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCC-CCCCC------------CCCcC
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNT-AQGYP------------NTPGI 81 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~-g~~~~------------~~~~~ 81 (367)
+.++.|++|+|.|+.|+=... +-+ .+++.+. |+|-|++..+...|. |...+ +..++
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~~-------~~~---~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl 119 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFDK-------NGE---AIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGF 119 (344)
T ss_pred ceEECCEECCCCCEECCCCCC-------ChH---HHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCC
Confidence 578899999999988663221 222 2344444 789999987665422 22212 11222
Q ss_pred CCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 82 WTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 82 ~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
-+. -++.|.+.....+ .+.++++++...... + .....++|
T Consensus 120 ~n~-g~~~~~~~l~~~~-~~~pvivsI~~~~~~-------------------------------~-------~~~~~~d~ 159 (344)
T PRK05286 120 NND-GADALAERLKKAY-RGIPLGINIGKNKDT-------------------------------P-------LEDAVDDY 159 (344)
T ss_pred CCH-hHHHHHHHHHHhc-CCCcEEEEEecCCCC-------------------------------C-------cccCHHHH
Confidence 222 1333333222223 567788888542110 0 00123678
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCccc-ccCCCCCCCchhhHhHHHHHHHHHHHHHhCC----cceEEEeCCCc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQV-NDRTDEYGGSLENRCRFALEVVEAVVREIGA----ERVGMRLSPYA 236 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~-N~R~D~yGgs~enr~r~~~eii~aiR~~vg~----~~i~vrls~~~ 236 (367)
++.++.+.+ ++|++|||.+| |++ |.|.++++ ..+.|++++||+++++ .||.|||+++
T Consensus 160 ~~~~~~~~~-~ad~lelN~sc---------P~~~g~~~~~~~-------~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~- 221 (344)
T PRK05286 160 LICLEKLYP-YADYFTVNISS---------PNTPGLRDLQYG-------EALDELLAALKEAQAELHGYVPLLVKIAPD- 221 (344)
T ss_pred HHHHHHHHh-hCCEEEEEccC---------CCCCCcccccCH-------HHHHHHHHHHHHHHhccccCCceEEEeCCC-
Confidence 888887754 79999999888 554 55655555 3466999999999984 5899999983
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc-------------CCch----hhHHHHHHHHHhc--CCcEE
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL-------------TDKS----ETQRSLLSMRRAF--EGTFI 297 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~-------------~~~~----~~~~~~~~ir~~~--~~pvi 297 (367)
.+.++..++++.+++.|+|.|.++.+..... .+.+ ..+.+++.+++.+ ++||+
T Consensus 222 --------~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIi 293 (344)
T PRK05286 222 --------LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPII 293 (344)
T ss_pred --------CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 2345677899999999999999987653210 0111 2345678899988 78999
Q ss_pred EeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 298 AAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 298 ~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
++||+ |++++.++|..| +|+|+++|+++.+ |+++++++++
T Consensus 294 g~GGI~s~eda~e~l~aG-Ad~V~v~~~~~~~gP~~~~~i~~~ 335 (344)
T PRK05286 294 GVGGIDSAEDAYEKIRAG-ASLVQIYSGLIYEGPGLVKEIVRG 335 (344)
T ss_pred EECCCCCHHHHHHHHHcC-CCHHHHHHHHHHhCchHHHHHHHH
Confidence 99999 899999999988 9999999999885 9999999876
No 32
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.85 E-value=2.1e-19 Score=173.10 Aligned_cols=241 Identities=17% Similarity=0.166 Sum_probs=167.4
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCC---CCCCCCC--------------
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSN---TAQGYPN-------------- 77 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~---~g~~~~~-------------- 77 (367)
++++.|++|+|.|+.++-+... +.+. ..+... |+|-|++..+...+ .|...+.
T Consensus 3 ~v~~~Gl~l~nPv~~ASg~~~~------~~e~---~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~ 73 (325)
T cd04739 3 STTYLGLSLKNPLVASASPLSR------NLDN---IRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSY 73 (325)
T ss_pred eEEECCEecCCCCEeCCcCCCC------CHHH---HHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccc
Confidence 3578899999999997443211 3333 233333 78888888665442 2222211
Q ss_pred --CCcCCCHHhhhhhhHHHHHH-HHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHH
Q 017733 78 --TPGIWTKEQVEAWKPIVDAV-HQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEI 154 (367)
Q Consensus 78 --~~~~~~~~~~~~~~~l~~~v-h~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI 154 (367)
..++.+. -++.|.+..... ++.+.++++|++.. .
T Consensus 74 in~~g~~n~-g~~~~~~~i~~~~~~~~~pvi~si~g~---------------------------------~--------- 110 (325)
T cd04739 74 FPEYGRYNL-GPEEYLELIRRAKRAVSIPVIASLNGV---------------------------------S--------- 110 (325)
T ss_pred cccccccCc-CHHHHHHHHHHHHhccCCeEEEEeCCC---------------------------------C---------
Confidence 1122222 233333333333 33478899998310 0
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCC
Q 017733 155 PKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSP 234 (367)
Q Consensus 155 ~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~ 234 (367)
.++|.++|+.+.++|+|+||||.+| .|.+.+.+|++++++ +.+++++||+++. .||.||+++
T Consensus 111 ---~~~~~~~a~~~~~~gad~iElN~s~-----------~~~~~~~~g~~~~~~---~~eiv~~v~~~~~-iPv~vKl~p 172 (325)
T cd04739 111 ---AGGWVDYARQIEEAGADALELNIYA-----------LPTDPDISGAEVEQR---YLDILRAVKSAVT-IPVAVKLSP 172 (325)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEeCCC-----------CCCCCCcccchHHHH---HHHHHHHHHhccC-CCEEEEcCC
Confidence 1578899999999999999999987 355667888887654 6899999999984 599999998
Q ss_pred CccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC-------------C----chhhHHHHHHHHHhcCCcEE
Q 017733 235 YAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT-------------D----KSETQRSLLSMRRAFEGTFI 297 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~-------------~----~~~~~~~~~~ir~~~~~pvi 297 (367)
+. ++...+++.+++.|+|.|.++........ + .+....+++.+++.+++||+
T Consensus 173 ~~-----------~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIi 241 (325)
T cd04739 173 FF-----------SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLA 241 (325)
T ss_pred Cc-----------cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEE
Confidence 31 13556888899999999999876421100 0 01123456778888899999
Q ss_pred EeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 298 AAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 298 ~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
++||+ |.++|.++|..| +|+|+++|+++.+ |+++.++.++
T Consensus 242 g~GGI~s~~Da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 242 ASGGVHDAEDVVKYLLAG-ADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred EECCCCCHHHHHHHHHcC-CCeeEEehhhhhcCchHHHHHHHH
Confidence 99999 899999999988 9999999999995 9999998877
No 33
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.1e-20 Score=174.90 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+.+.+||+++..-+ |||.||||| |..=-+...||..|.....++-|+|++||..++. +|.+||+..+
T Consensus 86 ~~ll~Aa~lv~~y~-D~idlNcGC---------Pq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~-pVs~KIRI~~-- 152 (358)
T KOG2335|consen 86 ENLLKAARLVQPYC-DGIDLNCGC---------PQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNV-PVSVKIRIFV-- 152 (358)
T ss_pred HHHHHHHHHhhhhc-CcccccCCC---------CHHHHhcCCccceeccCHHHHHHHHHHHHhhcCC-CeEEEEEecC--
Confidence 57899999999877 999999999 6666788899999999999999999999999974 5666665532
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC--CchhhHHHHHHHHHhcC-CcEEEeCCC-CHHHHHHHHHcC
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT--DKSETQRSLLSMRRAFE-GTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~--~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
+.+++..++++++++|++++.||+++..+.. ..+.++.+++.||+.++ +||++||+| +.++++.+++..
T Consensus 153 -------d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~t 225 (358)
T KOG2335|consen 153 -------DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYT 225 (358)
T ss_pred -------cHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHh
Confidence 3567889999999999999999999876654 55678889999999998 999999999 899999999955
Q ss_pred CCcEEcccHHHHhCCchHHH
Q 017733 315 YTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 315 ~~D~V~~gR~~ladP~l~~k 334 (367)
.+|.||.|||++.||.++.-
T Consensus 226 G~dGVM~arglL~NPa~F~~ 245 (358)
T KOG2335|consen 226 GADGVMSARGLLYNPALFLT 245 (358)
T ss_pred CCceEEecchhhcCchhhcc
Confidence 59999999999999999855
No 34
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.84 E-value=2.7e-19 Score=172.66 Aligned_cols=248 Identities=15% Similarity=0.106 Sum_probs=165.8
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCC-CCCCC------------CCCcCC
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNT-AQGYP------------NTPGIW 82 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~-g~~~~------------~~~~~~ 82 (367)
+.++.|++|+|.|+.|+=... +.+.+.++. .+ |+|.|++..+...+. |...+ +..++-
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~~~-------~~~~~~~~~-~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~ 110 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGFDK-------NAEAIDALL-AL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFN 110 (327)
T ss_pred ceEECCEECCCCCEeCcCCCC-------CHHHHHHHH-HC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCC
Confidence 478889999999987663221 333333333 23 789999887665422 22211 111222
Q ss_pred CHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017733 83 TKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFR 162 (367)
Q Consensus 83 ~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~ 162 (367)
+.. ++.|.+........+.++++|+..... +++++.+++|+
T Consensus 111 n~g-~~~~~~~l~~~~~~~~plivsi~g~~~--------------------------------------~~~~~~~~d~~ 151 (327)
T cd04738 111 NDG-ADAVAKRLKKRRPRGGPLGVNIGKNKD--------------------------------------TPLEDAVEDYV 151 (327)
T ss_pred Ccc-HHHHHHHHHHhccCCCeEEEEEeCCCC--------------------------------------CcccccHHHHH
Confidence 221 222222111111246788899843110 01234457888
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCccc-ccCCCCCCCchhhHhHHHHHHHHHHHHHhCC----cceEEEeCCCcc
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQV-NDRTDEYGGSLENRCRFALEVVEAVVREIGA----ERVGMRLSPYAE 237 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~-N~R~D~yGgs~enr~r~~~eii~aiR~~vg~----~~i~vrls~~~~ 237 (367)
+.++.+.. ++|+||||.+| |++ +.|. ......+.+++++||+++.+ .||.||++++
T Consensus 152 ~~~~~~~~-~ad~ielN~sc---------P~~~g~~~-------~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-- 212 (327)
T cd04738 152 IGVRKLGP-YADYLVVNVSS---------PNTPGLRD-------LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-- 212 (327)
T ss_pred HHHHHHHh-hCCEEEEECCC---------CCCCcccc-------ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC--
Confidence 88888765 49999999999 432 2332 23456678999999999852 4899999973
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc-------------CCc----hhhHHHHHHHHHhc--CCcEEE
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL-------------TDK----SETQRSLLSMRRAF--EGTFIA 298 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~-------------~~~----~~~~~~~~~ir~~~--~~pvi~ 298 (367)
.+.++..++++.++++|+|+|.++.+..... .+. +.....++.+++.+ ++||++
T Consensus 213 -------~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~ 285 (327)
T cd04738 213 -------LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIG 285 (327)
T ss_pred -------CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEE
Confidence 2345677899999999999999887542110 111 12246778899998 789999
Q ss_pred eCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 299 AGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 299 ~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
+||+ |++++.++|..| +|+|+++|+++.+ |+++.++.++
T Consensus 286 ~GGI~t~~da~e~l~aG-Ad~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 286 VGGISSGEDAYEKIRAG-ASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred ECCCCCHHHHHHHHHcC-CCHHhccHHHHhhCcHHHHHHHhc
Confidence 9999 899999999988 9999999999986 9999999875
No 35
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.84 E-value=4.4e-19 Score=169.25 Aligned_cols=248 Identities=14% Similarity=0.098 Sum_probs=172.1
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeC-C-CCCCCC----------CCCcC--
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVS-N-TAQGYP----------NTPGI-- 81 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~-~-~g~~~~----------~~~~~-- 81 (367)
+++++|++|||.|+.++=.... +.+.+.++.+. |+|.|++..+... + .|...+ +..++
T Consensus 3 ~~~~~Gl~l~nPi~~aag~~~~------~~~~~~~~~~~--G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 3 SVTFCGIKFPNPFGLASAPPTT------SYPMIRRAFEA--GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred ceEECCEEcCCCCEeCCcCCCC------CHHHHHHHHHh--CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 4678899999999999842110 33433443322 6888888877666 3 332111 11112
Q ss_pred ---CCHHhhhhhhHHHHHHHH-c-CCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 017733 82 ---WTKEQVEAWKPIVDAVHQ-K-GGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPK 156 (367)
Q Consensus 82 ---~~~~~~~~~~~l~~~vh~-~-g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ 156 (367)
+++.-++.+.+.+...++ . +.++++|++-. ..+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~--------------------------------~~~---------- 112 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCE--------------------------------YNK---------- 112 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCC--------------------------------CCH----------
Confidence 222223333333333333 2 46788888420 011
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCc
Q 017733 157 IVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYA 236 (367)
Q Consensus 157 ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~ 236 (367)
++|+++|+++.++|+|+||||++| |.. .....+|..+......+.+++++||+.+. .||.|||+++
T Consensus 113 --~~~~~~a~~~~~~gad~ielN~sC---------P~~-~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~- 178 (299)
T cd02940 113 --EDWTELAKLVEEAGADALELNFSC---------PHG-MPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPN- 178 (299)
T ss_pred --HHHHHHHHHHHhcCCCEEEEECCC---------CCC-CCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCC-
Confidence 689999999988999999999999 443 12234566788888999999999999884 4899999983
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc---------------------ccCCch----hhHHHHHHHHHh
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI---------------------QLTDKS----ETQRSLLSMRRA 291 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~---------------------~~~~~~----~~~~~~~~ir~~ 291 (367)
.++..++++.+++.|+|.|.+++.... ...+.+ ..+..+..++++
T Consensus 179 ----------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~ 248 (299)
T cd02940 179 ----------ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA 248 (299)
T ss_pred ----------chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh
Confidence 123567889999999999986542211 011111 125678889999
Q ss_pred c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh-CCchHHHHHhC
Q 017733 292 F--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA-NPDLPKRFELN 338 (367)
Q Consensus 292 ~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la-dP~l~~k~~~g 338 (367)
+ ++|||++||+ +.+++.++|..| ||+|+++|+++. .|+++.++.++
T Consensus 249 ~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 249 PEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeecccCCcHHHHHhhh
Confidence 9 8999999999 899999999998 999999999988 99999998875
No 36
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.82 E-value=1.7e-18 Score=167.73 Aligned_cols=241 Identities=16% Similarity=0.144 Sum_probs=165.9
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCC--------------------C
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQ--------------------G 74 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~--------------------~ 74 (367)
.++++|++|||.|+.++-+... +.+. +.+... |+|-|++..+...+.+. .
T Consensus 4 ~~~~~Gl~l~nPv~~asg~~~~------~~~~---~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (334)
T PRK07565 4 STTYLGLTLRNPLVASASPLSE------SVDN---VKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALD 74 (334)
T ss_pred eEEECCEecCCCCEecCcCCCC------CHHH---HHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhh
Confidence 4678899999999877654321 3333 333333 68888877654332211 0
Q ss_pred CCCCCcCCCHHhhhhhhHHHHHHHH-cCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHH
Q 017733 75 YPNTPGIWTKEQVEAWKPIVDAVHQ-KGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEE 153 (367)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~vh~-~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~e 153 (367)
..+..++ ...-++.|.+.+..+++ .+.++++|+.-. .+
T Consensus 75 ~~n~~gl-~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~---------------------------------~~------- 113 (334)
T PRK07565 75 YFPEPAK-FYVGPEEYLELIRRAKEAVDIPVIASLNGS---------------------------------SA------- 113 (334)
T ss_pred hhhhhhc-cCcCHHHHHHHHHHHHHhcCCcEEEEeccC---------------------------------CH-------
Confidence 0011122 11224455555544533 367889888310 01
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeC
Q 017733 154 IPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLS 233 (367)
Q Consensus 154 I~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls 233 (367)
++|.+.|+++.++|+|+||||.+| .|.+.+.+|++.+++ +.+++++||+++. .||.+|++
T Consensus 114 -----~e~~~~a~~~~~agad~ielN~sc-----------pp~~~~~~g~~~~~~---~~eil~~v~~~~~-iPV~vKl~ 173 (334)
T PRK07565 114 -----GGWVDYARQIEQAGADALELNIYY-----------LPTDPDISGAEVEQR---YLDILRAVKSAVS-IPVAVKLS 173 (334)
T ss_pred -----HHHHHHHHHHHHcCCCEEEEeCCC-----------CCCCCCCccccHHHH---HHHHHHHHHhccC-CcEEEEeC
Confidence 467899999999999999999987 234556777776543 5899999999884 48999998
Q ss_pred CCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC-------------C----chhhHHHHHHHHHhcCCcE
Q 017733 234 PYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT-------------D----KSETQRSLLSMRRAFEGTF 296 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~-------------~----~~~~~~~~~~ir~~~~~pv 296 (367)
++ .++...+++.+++.|+|.|.++.+...... + .+.....+..+++.+++||
T Consensus 174 p~-----------~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipI 242 (334)
T PRK07565 174 PY-----------FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADL 242 (334)
T ss_pred CC-----------chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCE
Confidence 73 123457888999999999998876422100 0 0112345667888889999
Q ss_pred EEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 297 IAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 297 i~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
|++||+ |.+++.++|..| +|+|+++|+++.+ |+++.++.++
T Consensus 243 ig~GGI~s~~Da~e~l~aG-A~~V~v~t~~~~~g~~~~~~i~~~ 285 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAG-ADVVMIASALLRHGPDYIGTILRG 285 (334)
T ss_pred EEECCCCCHHHHHHHHHcC-CCceeeehHHhhhCcHHHHHHHHH
Confidence 999999 899999999988 9999999999996 9999998877
No 37
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.81 E-value=3.6e-18 Score=155.68 Aligned_cols=205 Identities=11% Similarity=0.012 Sum_probs=153.7
Q ss_pred HHHHhhcCCCeeEEEccceeCCC-----------CCCCCCCCcCCCH-HhhhhhhHHHHHHHHcCCeeEEccccCCccCC
Q 017733 49 LYYSQRTTNGGFLIAEATGVSNT-----------AQGYPNTPGIWTK-EQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSN 116 (367)
Q Consensus 49 ~~y~~~a~g~Glii~e~~~v~~~-----------g~~~~~~~~~~~~-~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~ 116 (367)
+|..+.+..+|+++.++...+.. |+..+ ++++ .....+.+-...++ .+.++++|+.+.
T Consensus 8 ~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef----~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~----- 77 (231)
T TIGR00736 8 EFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEF----SFNLEEFNSYIIEQIKKAE-SRALVSVNVRFV----- 77 (231)
T ss_pred HHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCccc----CcCcccHHHHHHHHHHHHh-hcCCEEEEEecC-----
Confidence 45666554689999999987643 33332 3343 23455555666665 455999999431
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCccccc
Q 017733 117 YGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVND 196 (367)
Q Consensus 117 ~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~ 196 (367)
.| ++|.++|+.+.+ ++|+||||++| |....
T Consensus 78 ----------------------------~~------------ee~~~~a~~v~~-~~d~IdiN~gC---------P~~~v 107 (231)
T TIGR00736 78 ----------------------------DL------------EEAYDVLLTIAE-HADIIEINAHC---------RQPEI 107 (231)
T ss_pred ----------------------------CH------------HHHHHHHHHHhc-CCCEEEEECCC---------CcHHH
Confidence 12 578888888765 89999999999 65445
Q ss_pred CCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC
Q 017733 197 RTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT 276 (367)
Q Consensus 197 R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~ 276 (367)
....+|..+...+..+.++++++|+. ..||.||+++.. +.++...+++.++++|+|+|+|+.... .
T Consensus 108 ~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~---------~~~~~~~~a~~l~~aGad~i~Vd~~~~---g 173 (231)
T TIGR00736 108 TEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC---------IPLDELIDALNLVDDGFDGIHVDAMYP---G 173 (231)
T ss_pred cCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC---------CcchHHHHHHHHHHcCCCEEEEeeCCC---C
Confidence 55567778888999999999999943 348999999831 223467899999999999999974321 1
Q ss_pred CchhhHHHHHHHHHhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 277 DKSETQRSLLSMRRAFE-GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 277 ~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
.....++.++.+++.++ +|||++|++ |.+++.++++.| ||+|++||+++.+
T Consensus 174 ~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~VmvgR~~l~~ 226 (231)
T TIGR00736 174 KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSVARAILKG 226 (231)
T ss_pred CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEEcHhhccC
Confidence 22246788999999995 999999999 899999999987 9999999999865
No 38
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.78 E-value=1e-16 Score=152.52 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=161.2
Q ss_pred ccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCC-CCCCC----------CCCcCCCHHh
Q 017733 18 KMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNT-AQGYP----------NTPGIWTKEQ 86 (367)
Q Consensus 18 ~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~-g~~~~----------~~~~~~~~~~ 86 (367)
++.|++|||.|+.|+=.... +.+.+..+.+ + |+|-|++..+...+. |...+ +..++-+. -
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~~------~~e~~~~~~~-~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~-g 72 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWCT------TLEDLLELAA-S-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNL-G 72 (294)
T ss_pred ccCCeeCCCCCEECCCCCCC------CHHHHHHHHH-c-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCc-C
Confidence 57899999999999875211 3344444333 3 789898886655433 22211 11233222 2
Q ss_pred hhhhhHHHHHHH----HcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVH----QKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFR 162 (367)
Q Consensus 87 ~~~~~~l~~~vh----~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~ 162 (367)
++.|.+.....+ +.+.++++|++. . + ++|+
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g---------------------------------~-~------------~~~~ 106 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTG---------------------------------S-A------------EDIA 106 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCC---------------------------------C-H------------HHHH
Confidence 333333333332 246788888842 0 1 5778
Q ss_pred HHHHHHHHh---CCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 163 LAARNAIEA---GFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 163 ~aA~~a~~a---GfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
+.+++..+. |+|+||||.+| |++. -++++......+.+++++||+++. .||.|||+++.
T Consensus 107 ~~~~~~~~~~~~~ad~ielN~sC---------Pn~~-----~~~~~~~~~~~~~~i~~~v~~~~~-iPv~vKl~p~~--- 168 (294)
T cd04741 107 AMYKKIAAHQKQFPLAMELNLSC---------PNVP-----GKPPPAYDFDATLEYLTAVKAAYS-IPVGVKTPPYT--- 168 (294)
T ss_pred HHHHHHHhhccccccEEEEECCC---------CCCC-----CcccccCCHHHHHHHHHHHHHhcC-CCEEEEeCCCC---
Confidence 888888775 79999999999 4431 112333446789999999999984 48999999841
Q ss_pred ccCCCChHHHHHHHHHHhhhc--CccEEEEecCCc-----c----c-------cC---C----chhhHHHHHHHHHhcC-
Q 017733 240 EAVDSNPEALGLYMAKALNKF--KLLYLHVIEPRM-----I----Q-------LT---D----KSETQRSLLSMRRAFE- 293 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~--Gvd~i~v~~~~~-----~----~-------~~---~----~~~~~~~~~~ir~~~~- 293 (367)
+.++..++++.+.+. |+|.|.+++... . . .+ + .+.....++.+++.++
T Consensus 169 ------~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~ 242 (294)
T cd04741 169 ------DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPS 242 (294)
T ss_pred ------CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCC
Confidence 234466888888888 899887643220 0 0 00 1 0112244567778884
Q ss_pred -CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh-CCchHHHHHhC
Q 017733 294 -GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA-NPDLPKRFELN 338 (367)
Q Consensus 294 -~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la-dP~l~~k~~~g 338 (367)
+|||++||+ |.+++.++|..| +|.|+++|+++. +|+++.++.++
T Consensus 243 ~ipIig~GGI~s~~da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 243 EIQIIGVGGVLDGRGAFRMRLAG-ASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC-CCceeEchhhhhcCchHHHHHHHH
Confidence 899999999 899999999998 999999999995 99999999875
No 39
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.77 E-value=3.8e-17 Score=163.11 Aligned_cols=246 Identities=12% Similarity=0.050 Sum_probs=166.5
Q ss_pred ccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCC-CCC----------C-----
Q 017733 16 AYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGY-PNT----------P----- 79 (367)
Q Consensus 16 Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~-~~~----------~----- 79 (367)
+.++.|++|||.|+.++=.... -.+...+++ + + |+|.|++..+. .+.|... +.. +
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~-----~~~~~~~~~-~-~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTN-----KYYNVARAF-E-A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCC-----CHHHHHHHH-H-h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCc
Confidence 4678899999999998763321 023334444 2 3 68888877655 3233322 110 1
Q ss_pred cCCCHHhhhhhhHHHHHHHH-c-CCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017733 80 GIWTKEQVEAWKPIVDAVHQ-K-GGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKI 157 (367)
Q Consensus 80 ~~~~~~~~~~~~~l~~~vh~-~-g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~i 157 (367)
+++++..++.+-+.+..+++ . +.++++||+.. ..
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~--------------------------------~~------------ 111 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVE--------------------------------CN------------ 111 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccC--------------------------------CC------------
Confidence 22222222333333333322 2 45678888420 00
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcc-cccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCc
Q 017733 158 VNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQ-VNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYA 236 (367)
Q Consensus 158 i~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~-~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~ 236 (367)
.++|++.|+.+.++|+|+||||.+| |. .+.| .+|..+......+.+|+++||+.+. .||.|||+++.
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~sc---------P~~~~~~--~~g~~~~~~~~~~~~i~~~v~~~~~-~Pv~vKl~p~~ 179 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGC---------PHGMSER--GMGSAVGQVPELVEMYTRWVKRGSR-LPVIVKLTPNI 179 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------CCCcccc--CCcccccCCHHHHHHHHHHHHhccC-CcEEEEcCCCc
Confidence 1578999999999999999999999 54 2222 3566777888999999999999974 48999999831
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc---------------------ccCCchh----hHHHHHHHHHh
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI---------------------QLTDKSE----TQRSLLSMRRA 291 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~---------------------~~~~~~~----~~~~~~~ir~~ 291 (367)
.+...+++.+++.|+|.|.+.+.... ...+.++ .+..+..++++
T Consensus 180 -----------~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~ 248 (420)
T PRK08318 180 -----------TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD 248 (420)
T ss_pred -----------ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc
Confidence 12456888999999998875332111 0011222 34667788888
Q ss_pred c---CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh-CCchHHHHHhC
Q 017733 292 F---EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA-NPDLPKRFELN 338 (367)
Q Consensus 292 ~---~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la-dP~l~~k~~~g 338 (367)
+ ++|||++||+ |.+++.++|..| +|.|+++|+++. +|+++.++..+
T Consensus 249 ~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~ 299 (420)
T PRK08318 249 PETRGLPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISG 299 (420)
T ss_pred cccCCCCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHH
Confidence 7 7899999999 899999999998 999999999999 89999998887
No 40
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.69 E-value=3.5e-15 Score=144.15 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhC------CcceEEE
Q 017733 158 VNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIG------AERVGMR 231 (367)
Q Consensus 158 i~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg------~~~i~vr 231 (367)
.++|++.++++.+ ..|+||||..| |++ .....+ .....+.+++++||+++. ..||.+|
T Consensus 153 ~~dy~~~~~~~~~-~ad~iElNlSc---------Pn~--~~~~~~----~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 153 KEDYAACLRKLGP-LADYLVVNVSS---------PNT--PGLRDL----QYKAELRDLLTAVKQEQDGLRRVHRVPVLVK 216 (335)
T ss_pred HHHHHHHHHHHhh-hCCEEEEEccC---------CCC--CCcccc----cCHHHHHHHHHHHHHHHHhhhhccCCceEEE
Confidence 3678888887765 59999999988 432 211112 235678999999999885 1489999
Q ss_pred eCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc-----c-----C---Cchh----hHHHHHHHHHhc--
Q 017733 232 LSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ-----L-----T---DKSE----TQRSLLSMRRAF-- 292 (367)
Q Consensus 232 ls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~-----~-----~---~~~~----~~~~~~~ir~~~-- 292 (367)
|+++ .+.++...+++.+++.|+|.|.+.+..... + . +.++ ....+..+++.+
T Consensus 217 LsP~---------~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~ 287 (335)
T TIGR01036 217 IAPD---------LTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQG 287 (335)
T ss_pred eCCC---------CCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCC
Confidence 9994 223456779999999999999876533210 0 0 1111 224556677777
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh-CCchHHHHHhC
Q 017733 293 EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA-NPDLPKRFELN 338 (367)
Q Consensus 293 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la-dP~l~~k~~~g 338 (367)
++|||++||+ |.+++.++|..| +|+|.++++++. +|+|+.++.++
T Consensus 288 ~ipiig~GGI~~~~da~e~l~aG-A~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 288 RLPIIGVGGISSAQDALEKIRAG-ASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC-CcHHHhhHHHHHhCchHHHHHHhh
Confidence 5799999999 899999999999 999999999988 59999999875
No 41
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.64 E-value=4.9e-14 Score=137.64 Aligned_cols=255 Identities=13% Similarity=0.122 Sum_probs=167.4
Q ss_pred CCCCccCCCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCC--CCCCC--------
Q 017733 7 TTTNIPLLTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNT--AQGYP-------- 76 (367)
Q Consensus 7 ~~~~~~Lf~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~--g~~~~-------- 76 (367)
++.++.| ..+++|++|||.|+.++=.... +.+.+..+.+ + |+|-|++-.+..++. +...+
T Consensus 5 ~~~~~dL--st~~~Gl~l~NP~i~ASgp~t~------~~e~~~~~~~-~-g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g 74 (385)
T PLN02495 5 AASEPDL--SVTVNGLKMPNPFVIGSGPPGT------NYTVMKRAFD-E-GWGGVIAKTVSLDASKVINVTPRYARLRAG 74 (385)
T ss_pred ccCCCcc--eEEECCEEcCCCcEeCCccCCC------CHHHHHHHHh-c-CCeEEEeccccCCccccCCCCCeEEecCcc
Confidence 4456666 5788999999999998775431 3333233222 2 688777665543321 11100
Q ss_pred -------CCCc-----CCCHHhhhhhhHHHHHHH-Hc-CCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 017733 77 -------NTPG-----IWTKEQVEAWKPIVDAVH-QK-GGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLD 142 (367)
Q Consensus 77 -------~~~~-----~~~~~~~~~~~~l~~~vh-~~-g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~ 142 (367)
+..+ ++++.-++.|-+....++ +. +.++++.|.-
T Consensus 75 ~~~~~~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~-------------------------------- 122 (385)
T PLN02495 75 ANGSAKGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIME-------------------------------- 122 (385)
T ss_pred cccccccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccC--------------------------------
Confidence 1111 233333445444444554 33 4577766621
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCccc-ccCCCCCCCchhhHhHHHHHHHHHHHH
Q 017733 143 WSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQV-NDRTDEYGGSLENRCRFALEVVEAVVR 221 (367)
Q Consensus 143 ~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~-N~R~D~yGgs~enr~r~~~eii~aiR~ 221 (367)
... .++|.+.|+++.++|.|+||||.+| |++ +.|. .|..+......+.+++++||+
T Consensus 123 ~~s------------~~~~~~~a~~~e~~GaD~iELNiSC---------Pn~~~~r~--~g~~~gq~~e~~~~i~~~Vk~ 179 (385)
T PLN02495 123 EYN------------KDAWEEIIERVEETGVDALEINFSC---------PHGMPERK--MGAAVGQDCDLLEEVCGWINA 179 (385)
T ss_pred CCC------------HHHHHHHHHHHHhcCCCEEEEECCC---------CCCCCcCc--cchhhccCHHHHHHHHHHHHH
Confidence 000 1688999999999999999999998 432 1122 355677889999999999999
Q ss_pred HhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc-------c----c--------C--Cchh
Q 017733 222 EIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI-------Q----L--------T--DKSE 280 (367)
Q Consensus 222 ~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~-------~----~--------~--~~~~ 280 (367)
.+. .||.|||+|+ ..+...+++.+.+.|+|.|.+.+.... . + . +.++
T Consensus 180 ~~~-iPv~vKLsPn-----------~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~a 247 (385)
T PLN02495 180 KAT-VPVWAKMTPN-----------ITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKA 247 (385)
T ss_pred hhc-CceEEEeCCC-----------hhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchh
Confidence 873 4899999984 123556888889999998877553221 0 0 0 0010
Q ss_pred -h---HHHHHHHHHhc------CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhCC
Q 017733 281 -T---QRSLLSMRRAF------EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELNA 339 (367)
Q Consensus 281 -~---~~~~~~ir~~~------~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g~ 339 (367)
. ......+++.+ ++||+++||+ |.++|.++|..| +|.|.++.+++.+ |.+++++.+|-
T Consensus 248 lkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aG-As~VQv~Ta~~~~Gp~vi~~i~~~L 317 (385)
T PLN02495 248 VRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLG-ADTVQVCTGVMMHGYPLVKNLCAEL 317 (385)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhC-CCceeEeeeeeecCcHHHHHHHHHH
Confidence 0 11223355554 3799999999 899999999999 9999999999999 99999998873
No 42
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.64 E-value=2.6e-14 Score=136.92 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhC-CCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAG-FDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aG-fdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~ 237 (367)
++|.+.|+.+.++| .|+||||..| |++-. +..+......+.+++++||+++. .||.+||+++.
T Consensus 105 ~~~~~~a~~~~~~g~ad~iElN~Sc---------Pn~~~-----~~~~g~d~~~~~~i~~~v~~~~~-~Pv~vKlsp~~- 168 (310)
T PRK02506 105 EETHTILKKIQASDFNGLVELNLSC---------PNVPG-----KPQIAYDFETTEQILEEVFTYFT-KPLGVKLPPYF- 168 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCC---------CCCCC-----ccccccCHHHHHHHHHHHHHhcC-CccEEecCCCC-
Confidence 56778888888898 8999999999 43311 22222234457999999999884 48999999941
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCC-----cc----cc----C------C----chhhHHHHHHHHHhc--
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR-----MI----QL----T------D----KSETQRSLLSMRRAF-- 292 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~-----~~----~~----~------~----~~~~~~~~~~ir~~~-- 292 (367)
+..+..+.+..+.+.|++.+...... .. .+ . + .+........+++.+
T Consensus 169 --------~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~ 240 (310)
T PRK02506 169 --------DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNP 240 (310)
T ss_pred --------CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCC
Confidence 22334445555566678776554310 00 00 0 1 111234556677777
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh-CCchHHHHHhCC
Q 017733 293 EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA-NPDLPKRFELNA 339 (367)
Q Consensus 293 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la-dP~l~~k~~~g~ 339 (367)
++|||++||+ |.+++.++|..| +|+|+++.+++. +|+++.++.++-
T Consensus 241 ~ipIig~GGI~s~~da~e~i~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 241 SIQIIGTGGVKTGRDAFEHILCG-ASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC-CCHHhhhHHHHHhChHHHHHHHHHH
Confidence 5899999999 899999999999 999999999998 799999998873
No 43
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.57 E-value=7.8e-14 Score=132.96 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCC
Q 017733 156 KIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235 (367)
Q Consensus 156 ~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~ 235 (367)
+.+++|++.|+++. +|.|++|||..| |++ . .+..+.+......++++.+|+.+. .||.|||+++
T Consensus 109 ~~~~d~~~~a~~~~-~~ad~lElN~Sc---------Pn~--~---~~~~~~~~~~~~~~i~~~v~~~~~-~Pv~vKL~p~ 172 (295)
T PF01180_consen 109 EEIEDWAELAKRLE-AGADALELNLSC---------PNV--P---GGRPFGQDPELVAEIVRAVREAVD-IPVFVKLSPN 172 (295)
T ss_dssp GHHHHHHHHHHHHH-HHCSEEEEESTS---------TTS--T---TSGGGGGHHHHHHHHHHHHHHHHS-SEEEEEE-ST
T ss_pred hhHHHHHHHHHHhc-CcCCceEEEeec---------cCC--C---CccccccCHHHHHHHHHHHHhccC-CCEEEEecCC
Confidence 34578999998887 999999999988 433 2 233556667788889999998873 4999999994
Q ss_pred ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc---------cC--------Cc----hhhHHHHHHHHHhcC-
Q 017733 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ---------LT--------DK----SETQRSLLSMRRAFE- 293 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~---------~~--------~~----~~~~~~~~~ir~~~~- 293 (367)
- .+ .. ...++..+.+.|++.|.+.+..... +. +. +....+++.+++.++
T Consensus 173 ~-------~~-~~-~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~ 243 (295)
T PF01180_consen 173 F-------TD-IE-PFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ 243 (295)
T ss_dssp S-------SC-HH-HHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT
T ss_pred C-------Cc-hH-HHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc
Confidence 1 11 22 2345666668899998854321110 00 11 122356778889888
Q ss_pred -CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHH-HhCCchHHHHHhC
Q 017733 294 -GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLF-LANPDLPKRFELN 338 (367)
Q Consensus 294 -~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~-ladP~l~~k~~~g 338 (367)
+||+++||+ |.+++.++|..| +|.|.++.++ ..+|+.++++.++
T Consensus 244 ~i~Iig~GGI~s~~da~e~l~aG-A~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 244 DIPIIGVGGIHSGEDAIEFLMAG-ASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp SSEEEEESS--SHHHHHHHHHHT-ESEEEESHHHHHHGTTHHHHHHHH
T ss_pred ceEEEEeCCcCCHHHHHHHHHhC-CCHheechhhhhcCcHHHHHHHHH
Confidence 899999999 899999999999 9999999999 7799999999875
No 44
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.56 E-value=2.5e-13 Score=128.38 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhC-CCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAG-FDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aG-fdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~ 237 (367)
++|.+-+....+++ +|+||||..| |+ ++. |-++......+.+++++|++.+. .||.|||+|+
T Consensus 109 ~~~~d~~~~~~~~~~ad~ielNiSc---------Pn----t~g-~~~l~~~~e~l~~l~~~vk~~~~-~Pv~vKl~P~-- 171 (310)
T COG0167 109 EAWADYARLLEEAGDADAIELNISC---------PN----TPG-GRALGQDPELLEKLLEAVKAATK-VPVFVKLAPN-- 171 (310)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccC---------CC----CCC-hhhhccCHHHHHHHHHHHHhccc-CceEEEeCCC--
Confidence 46777777777888 9999999988 43 333 54677677899999999999985 5999999983
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc----C-------------C----chhhHHHHHHHHHhcC--C
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL----T-------------D----KSETQRSLLSMRRAFE--G 294 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~----~-------------~----~~~~~~~~~~ir~~~~--~ 294 (367)
.++..++++.++++|+|.|.+++-....+ . + .+.-...++.+++++. +
T Consensus 172 ---------~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~i 242 (310)
T COG0167 172 ---------ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDI 242 (310)
T ss_pred ---------HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCC
Confidence 35677899999999999997765322111 0 1 1112345677888876 8
Q ss_pred cEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 295 TFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 295 pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
|+|++||+ |.++|.+.|..| +++|.++.+++.+ |.++.++.+|
T Consensus 243 pIIGvGGI~s~~DA~E~i~aG-A~~vQv~Tal~~~Gp~i~~~I~~~ 287 (310)
T COG0167 243 PIIGVGGIETGEDALEFILAG-ASAVQVGTALIYKGPGIVKEIIKG 287 (310)
T ss_pred cEEEecCcCcHHHHHHHHHcC-CchheeeeeeeeeCchHHHHHHHH
Confidence 99999999 899999999999 9999999999999 9999999987
No 45
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.55 E-value=1.1e-13 Score=133.99 Aligned_cols=244 Identities=15% Similarity=0.142 Sum_probs=174.6
Q ss_pred CCccccCCeeeCCceeeCcCCCCccCCCCCCHHHHHHHHhhcC--CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhh
Q 017733 14 LTAYKMGQFNLSHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT--NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWK 91 (367)
Q Consensus 14 f~Pl~ig~~~lkNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~--g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~ 91 (367)
..|..-+.+-++.+.++||+++. .+.| |+++.+ |+-+...|++...+.=++.. ..|.
T Consensus 253 l~p~eKk~lD~r~K~~LaPLTTv---GNLP-------FRRlCk~lGADvTcgEMA~~tpLlqG~~-----------sEWA 311 (614)
T KOG2333|consen 253 LRPQEKKLLDFRDKKYLAPLTTV---GNLP-------FRRLCKKLGADVTCGEMAMATPLLQGTA-----------SEWA 311 (614)
T ss_pred cChhcccccccccceeecccccc---CCcc-------HHHHHHHhCCccchhHHHHHHHHhcccc-----------hhhh
Confidence 34556566888999999999886 4455 677765 77788888776654412111 1121
Q ss_pred HHHHHHHHcC--CeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017733 92 PIVDAVHQKG--GIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAI 169 (367)
Q Consensus 92 ~l~~~vh~~g--~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~ 169 (367)
..++|+ -.+++||.. ..| +...++|....
T Consensus 312 ----LlkRH~sEdiFGVQlag---------------------------------~~p------------dt~~kaaq~i~ 342 (614)
T KOG2333|consen 312 ----LLKRHQSEDIFGVQLAG---------------------------------SKP------------DTAAKAAQVIA 342 (614)
T ss_pred ----hhhhcCcccceeeEecc---------------------------------CCh------------HHHHHHHHHHH
Confidence 112333 368888842 112 34577776654
Q ss_pred -HhCCCEEEEecccchHHHhhcCcccccCCCCCCC-chhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChH
Q 017733 170 -EAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGG-SLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 170 -~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGg-s~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~ 247 (367)
.+-.|.|+||+||. . ..--.+-|| +|.||+.-+.++|+++....+.-||.|||.-. . .+..
T Consensus 343 e~~~VDFIDlN~GCP---------I-Dlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG--~-----keg~ 405 (614)
T KOG2333|consen 343 ETCDVDFIDLNMGCP---------I-DLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTG--T-----KEGH 405 (614)
T ss_pred hhcceeeeeccCCCC---------h-heeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecc--c-----ccCc
Confidence 57899999999994 2 222223355 59999999999999999999855777777641 1 1111
Q ss_pred HHHHHHHHHhh-hcCccEEEEecCCccccCCchhhHHHHHHHHHhcC--CcEEEeCCC-CHHHH-HHHHHcCCCcEEccc
Q 017733 248 ALGLYMAKALN-KFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE--GTFIAAGGY-SRDEG-NKAVAANYTDLVAFG 322 (367)
Q Consensus 248 ~~~~~l~~~L~-~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a-~~~L~~G~~D~V~~g 322 (367)
--+-.++..+. ++|++.+++|.++..+.+++..+++++..+.+..+ +|||++|.+ +.++- +..-..+.+|.||+|
T Consensus 406 ~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIa 485 (614)
T KOG2333|consen 406 PVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIA 485 (614)
T ss_pred hhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEee
Confidence 22445777776 89999999999998888998889999988887764 699999998 99884 555555559999999
Q ss_pred HHHHhCCchHHHHHhCCCCCCC
Q 017733 323 RLFLANPDLPKRFELNAPLNKY 344 (367)
Q Consensus 323 R~~ladP~l~~k~~~g~~~~~~ 344 (367)
||++.-|+++..+++-+-+.+.
T Consensus 486 RGALIKPWIFtEIkeqq~wD~s 507 (614)
T KOG2333|consen 486 RGALIKPWIFTEIKEQQHWDIS 507 (614)
T ss_pred ccccccchHhhhhhhhhcCCcc
Confidence 9999999999999998766544
No 46
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.53 E-value=1.7e-12 Score=114.89 Aligned_cols=185 Identities=21% Similarity=0.210 Sum_probs=132.2
Q ss_pred HHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCC
Q 017733 45 PHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNG 123 (367)
Q Consensus 45 ~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~ 123 (367)
+...++++..++ |++++.++....++.+..... .+.+....|..+.++++|+.+.....
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 71 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD------------KEVLKEVAAETDLPLGVQLAINDAAA-------- 71 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc------------ccHHHHHHhhcCCcEEEEEccCCchh--------
Confidence 677888888887 788888887776655432111 14566677788999999997642210
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCC
Q 017733 124 EAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGG 203 (367)
Q Consensus 124 ~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGg 203 (367)
....+|++++++|+|+|+||..|+|+
T Consensus 72 ------------------------------------~~~~~a~~~~~~g~d~v~l~~~~~~~------------------ 97 (200)
T cd04722 72 ------------------------------------AVDIAAAAARAAGADGVEIHGAVGYL------------------ 97 (200)
T ss_pred ------------------------------------hhhHHHHHHHHcCCCEEEEeccCCcH------------------
Confidence 00122889999999999999999765
Q ss_pred chhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCch--hh
Q 017733 204 SLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKS--ET 281 (367)
Q Consensus 204 s~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~--~~ 281 (367)
+++..++++++|+.++..++.+++++.... +.. .+.+.|+|++.++........... ..
T Consensus 98 -----~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~---------~~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~ 158 (200)
T cd04722 98 -----AREDLELIRELREAVPDVKVVVKLSPTGEL---------AAA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIA 158 (200)
T ss_pred -----HHHHHHHHHHHHHhcCCceEEEEECCCCcc---------chh-----hHHHcCCCEEEEcCCcCCCCCccCchhH
Confidence 578899999999999434889999874211 111 167789999988765443222111 11
Q ss_pred HHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccH
Q 017733 282 QRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 282 ~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR 323 (367)
....+.+++..++||+++||+ +++++.++++.| +|+|++||
T Consensus 159 ~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~vgs 200 (200)
T cd04722 159 DLLLILAKRGSKVPVIAGGGINDPEDAAEALALG-ADGVIVGS 200 (200)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEecC
Confidence 234556667788999999999 679999999998 99999986
No 47
>PLN02826 dihydroorotate dehydrogenase
Probab=99.51 E-value=2.6e-12 Score=126.71 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCC-chhhHhHHHHHHHHHHHHHh--------CC
Q 017733 155 PKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGG-SLENRCRFALEVVEAVVREI--------GA 225 (367)
Q Consensus 155 ~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGg-s~enr~r~~~eii~aiR~~v--------g~ 225 (367)
+..+++|++.++.+.. ..|.||||..| |++ . |. .++ ....+.+++++|+++. ..
T Consensus 200 ~~~~~Dy~~~~~~~~~-~aDylelNiSc---------PNt--p----glr~lq-~~~~l~~ll~~V~~~~~~~~~~~~~~ 262 (409)
T PLN02826 200 EDAAADYVQGVRALSQ-YADYLVINVSS---------PNT--P----GLRKLQ-GRKQLKDLLKKVLAARDEMQWGEEGP 262 (409)
T ss_pred cccHHHHHHHHHHHhh-hCCEEEEECCC---------CCC--C----Cccccc-ChHHHHHHHHHHHHHHHHhhhccccC
Confidence 3456789999888864 59999999988 543 1 21 222 2346677888777553 12
Q ss_pred cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC--------------Cch----hhHHHHHH
Q 017733 226 ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT--------------DKS----ETQRSLLS 287 (367)
Q Consensus 226 ~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~--------------~~~----~~~~~~~~ 287 (367)
.||.||++|+ .+.++...+++.+.+.|+|-|.+++.+...+. +.+ .....+..
T Consensus 263 ~Pv~vKlaPd---------l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~ 333 (409)
T PLN02826 263 PPLLVKIAPD---------LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLRE 333 (409)
T ss_pred CceEEecCCC---------CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHH
Confidence 3899999984 23455677899899999999988764321100 111 12345667
Q ss_pred HHHhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 288 MRRAF--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 288 ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
+++.+ ++|||++||+ |.+++.+.|..| +++|.++++++.+ |.++.++.++
T Consensus 334 l~~~~~~~ipIIgvGGI~sg~Da~e~i~AG-As~VQv~Ta~~~~Gp~~i~~I~~e 387 (409)
T PLN02826 334 MYRLTRGKIPLVGCGGVSSGEDAYKKIRAG-ASLVQLYTAFAYEGPALIPRIKAE 387 (409)
T ss_pred HHHHhCCCCcEEEECCCCCHHHHHHHHHhC-CCeeeecHHHHhcCHHHHHHHHHH
Confidence 87877 6899999999 899999999999 9999999999995 9999999886
No 48
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.37 E-value=5.4e-11 Score=113.63 Aligned_cols=131 Identities=18% Similarity=0.067 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
.+.+.++++.+.|+|+|+||.+| |....| +..++++++|+.++ .+|.+|...
T Consensus 130 ~~~~~i~~~~~~g~~~i~l~~~~---------p~~~~~-------------~~~~~i~~l~~~~~-~pvivK~v~----- 181 (299)
T cd02809 130 ITEDLLRRAEAAGYKALVLTVDT---------PVLGRR-------------LTWDDLAWLRSQWK-GPLILKGIL----- 181 (299)
T ss_pred HHHHHHHHHHHcCCCEEEEecCC---------CCCCCC-------------CCHHHHHHHHHhcC-CCEEEeecC-----
Confidence 34556677788999999999998 321111 34688999999986 478887432
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc--CCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF--EGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
+. +.++.+.++|+|+|.++.......+..++....+..+++.+ ++|||++||+ +..++.++|..| +
T Consensus 182 ------s~----~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG-A 250 (299)
T cd02809 182 ------TP----EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG-A 250 (299)
T ss_pred ------CH----HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC-C
Confidence 12 34677889999999997543222333445567788888877 4899999999 899999999998 9
Q ss_pred cEEcccHHHHhCC
Q 017733 317 DLVAFGRLFLANP 329 (367)
Q Consensus 317 D~V~~gR~~ladP 329 (367)
|+|++||+++...
T Consensus 251 d~V~ig~~~l~~~ 263 (299)
T cd02809 251 DAVLIGRPFLYGL 263 (299)
T ss_pred CEEEEcHHHHHHH
Confidence 9999999998764
No 49
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=99.34 E-value=2.2e-11 Score=119.12 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCc
Q 017733 158 VNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYA 236 (367)
Q Consensus 158 i~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~ 236 (367)
.++++++|++++++||++|+|+.++++++. ||.++..++|++||+++|++ .|.++.|.
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------~~~~~d~~~v~~ir~~~g~~~~l~vDaN~-- 198 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------EDLREDLARVRAVREAVGPDVDLMVDANG-- 198 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------HHHHHHHHHHHHHHHhhCCCCEEEEECCC--
Confidence 356888999999999999999999875544 79999999999999999977 68887764
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCC
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANY 315 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~ 315 (367)
..+.+++.++++.|++.+++|++ ++. .+.+...++.+++.+++||++.+.+ ++++++++++.+.
T Consensus 199 -------~~~~~~a~~~~~~l~~~~i~~iE--qP~------~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~ 263 (357)
T cd03316 199 -------RWDLAEAIRLARALEEYDLFWFE--EPV------PPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA 263 (357)
T ss_pred -------CCCHHHHHHHHHHhCccCCCeEc--CCC------CccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC
Confidence 33578899999999999999987 331 1224566788999999999999988 8999999999999
Q ss_pred CcEEcc
Q 017733 316 TDLVAF 321 (367)
Q Consensus 316 ~D~V~~ 321 (367)
+|+|.+
T Consensus 264 ~d~v~~ 269 (357)
T cd03316 264 VDIIQP 269 (357)
T ss_pred CCEEec
Confidence 999854
No 50
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.31 E-value=2.7e-10 Score=110.29 Aligned_cols=140 Identities=20% Similarity=0.177 Sum_probs=96.3
Q ss_pred hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHH
Q 017733 171 AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALG 250 (367)
Q Consensus 171 aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~ 250 (367)
.+.|+++||..+. +.-.+|. . ..++ +-.++.|++||+.++ .||.||.+.+ .. .
T Consensus 140 i~adal~i~ln~~---q~~~~p~------g-~~~f----~~~le~i~~i~~~~~-vPVivK~~g~--------g~----~ 192 (333)
T TIGR02151 140 IEADALAIHLNVL---QELVQPE------G-DRNF----KGWLEKIAEICSQLS-VPVIVKEVGF--------GI----S 192 (333)
T ss_pred hcCCCEEEcCccc---ccccCCC------C-CcCH----HHHHHHHHHHHHhcC-CCEEEEecCC--------CC----C
Confidence 4679999987552 1222221 0 1122 336799999999984 5899998752 12 2
Q ss_pred HHHHHHhhhcCccEEEEecCCcccc-------C-C----------chhhHHHHHHHHH-hcCCcEEEeCCC-CHHHHHHH
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQL-------T-D----------KSETQRSLLSMRR-AFEGTFIAAGGY-SRDEGNKA 310 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~-------~-~----------~~~~~~~~~~ir~-~~~~pvi~~Ggi-t~~~a~~~ 310 (367)
.+.++.|+++|+|+|+++.+..... . . ..+....+..+++ .+++|||++||+ ++.++.++
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~ka 272 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKA 272 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHH
Confidence 4578889999999999986431100 0 0 0011123445555 467899999999 89999999
Q ss_pred HHcCCCcEEcccHHHH-----hCCchHHHHHhC
Q 017733 311 VAANYTDLVAFGRLFL-----ANPDLPKRFELN 338 (367)
Q Consensus 311 L~~G~~D~V~~gR~~l-----adP~l~~k~~~g 338 (367)
|..| +|+|++||+++ .+|+.+.+..+.
T Consensus 273 LalG-Ad~V~igr~~L~~~~~~g~~~v~~~i~~ 304 (333)
T TIGR02151 273 IALG-ADAVGMARPFLKAALDEGEEAVIEEIEL 304 (333)
T ss_pred HHhC-CCeehhhHHHHHHHHhcCHHHHHHHHHH
Confidence 9999 99999999999 789877776654
No 51
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.13 E-value=1.5e-09 Score=105.81 Aligned_cols=116 Identities=16% Similarity=0.032 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+++|+++++.+++.+ ...++.++|++||++. -.+.+|+++
T Consensus 102 a~aa~~~~e~~~~~~-------------------------------~p~l~~~ii~~vr~a~--VtvkiRl~~------- 141 (369)
T TIGR01304 102 AAATRLLQELHAAPL-------------------------------KPELLGERIAEVRDSG--VITAVRVSP------- 141 (369)
T ss_pred HHHHHHHHHcCCCcc-------------------------------ChHHHHHHHHHHHhcc--eEEEEecCC-------
Confidence 679999998888762 2568899999999974 345666643
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccC-CchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT-DKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~-~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 319 (367)
..+.++++.++++|+|+|.++.++..+.+ .....+..+.++++.+++|||+ |++ |.+++.++++.| ||.|
T Consensus 142 ------~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aG-aDgV 213 (369)
T TIGR01304 142 ------QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTG-AAGV 213 (369)
T ss_pred ------cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEE
Confidence 12457889999999999999877654433 1112344566677778999998 556 999999999988 9999
Q ss_pred cccHHH
Q 017733 320 AFGRLF 325 (367)
Q Consensus 320 ~~gR~~ 325 (367)
++||+-
T Consensus 214 ~~G~gg 219 (369)
T TIGR01304 214 IVGPGG 219 (369)
T ss_pred EECCCC
Confidence 988754
No 52
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.02 E-value=3.9e-08 Score=95.95 Aligned_cols=131 Identities=21% Similarity=0.167 Sum_probs=90.7
Q ss_pred HhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHH
Q 017733 170 EAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEAL 249 (367)
Q Consensus 170 ~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~ 249 (367)
..+.|+++||..++ +.-.+|. |.- ..+-+++.|++||+.++ .||.||.+.. ..+
T Consensus 146 ~~~adal~l~l~~~---qe~~~p~---------g~~--~f~~~le~i~~i~~~~~-vPVivK~~g~--------g~s--- 199 (352)
T PRK05437 146 MIEADALQIHLNPL---QELVQPE---------GDR--DFRGWLDNIAEIVSALP-VPVIVKEVGF--------GIS--- 199 (352)
T ss_pred hcCCCcEEEeCccc---hhhcCCC---------Ccc--cHHHHHHHHHHHHHhhC-CCEEEEeCCC--------CCc---
Confidence 35789999997542 2222221 110 12346799999999984 5899999762 222
Q ss_pred HHHHHHHhhhcCccEEEEecCCccc-------cC-----------CchhhHHHHHHHHHh-cCCcEEEeCCC-CHHHHHH
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQ-------LT-----------DKSETQRSLLSMRRA-FEGTFIAAGGY-SRDEGNK 309 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~-------~~-----------~~~~~~~~~~~ir~~-~~~pvi~~Ggi-t~~~a~~ 309 (367)
.+.++.|.+.|+|+|+++...-.. .. ...+....+..+++. .++||+++||+ +..++.+
T Consensus 200 -~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k 278 (352)
T PRK05437 200 -KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAK 278 (352)
T ss_pred -HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHH
Confidence 357778889999999997642100 00 011122355667777 48999999999 8999999
Q ss_pred HHHcCCCcEEcccHHHHhC
Q 017733 310 AVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 310 ~L~~G~~D~V~~gR~~lad 328 (367)
+|..| +|+|++||+++..
T Consensus 279 ~l~~G-Ad~v~ig~~~l~~ 296 (352)
T PRK05437 279 ALALG-ADAVGMAGPFLKA 296 (352)
T ss_pred HHHcC-CCEEEEhHHHHHH
Confidence 99999 9999999999976
No 53
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.98 E-value=6.2e-08 Score=93.65 Aligned_cols=131 Identities=24% Similarity=0.231 Sum_probs=87.9
Q ss_pred HhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHH
Q 017733 170 EAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEAL 249 (367)
Q Consensus 170 ~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~ 249 (367)
.++.|+++||..+. +...+|. |. ...+-.++.|+++++.+. .||.+|.+.. ..+
T Consensus 138 ~~~adalel~l~~~---q~~~~~~---------~~--~df~~~~~~i~~l~~~~~-vPVivK~~g~--------g~s--- 191 (326)
T cd02811 138 MIEADALAIHLNPL---QEAVQPE---------GD--RDFRGWLERIEELVKALS-VPVIVKEVGF--------GIS--- 191 (326)
T ss_pred hcCCCcEEEeCcch---HhhcCCC---------CC--cCHHHHHHHHHHHHHhcC-CCEEEEecCC--------CCC---
Confidence 35789999987432 2222221 11 012235688888888873 4899999763 223
Q ss_pred HHHHHHHhhhcCccEEEEecCCcc---------ccCC-----------chhhHHHHHHHHHhc-CCcEEEeCCC-CHHHH
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMI---------QLTD-----------KSETQRSLLSMRRAF-EGTFIAAGGY-SRDEG 307 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~---------~~~~-----------~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a 307 (367)
.+.++.|++.|+|+|+++...-. .... ..+....+..+++.+ ++|||++||+ +..++
T Consensus 192 -~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv 270 (326)
T cd02811 192 -RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDI 270 (326)
T ss_pred -HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHH
Confidence 35677888999999999753110 0000 011123455667766 7999999999 89999
Q ss_pred HHHHHcCCCcEEcccHHHHhC
Q 017733 308 NKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 308 ~~~L~~G~~D~V~~gR~~lad 328 (367)
.++|..| +|+|++||+++.-
T Consensus 271 ~kal~lG-Ad~V~i~~~~L~~ 290 (326)
T cd02811 271 AKALALG-ADLVGMAGPFLKA 290 (326)
T ss_pred HHHHHhC-CCEEEEcHHHHHH
Confidence 9999999 9999999998753
No 54
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.89 E-value=2.5e-07 Score=89.37 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
+.+.+..+.++|+|.|+|+.+||. .....++|+++|+..+.-+|.+ .-
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~------------------------~~~~~~~i~~ik~~~p~v~Vi~--G~------ 142 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGH------------------------SVYVIEMIKFIKKKYPNVDVIA--GN------ 142 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC------------------------cHHHHHHHHHHHHHCCCceEEE--CC------
Confidence 456666778899999999987741 1345889999999875223433 11
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCC---ccc---cCCchhhHHHHHHHHHh---cCCcEEEeCCC-CHHHHHHH
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQ---LTDKSETQRSLLSMRRA---FEGTFIAAGGY-SRDEGNKA 310 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~---~~~~~~~~~~~~~ir~~---~~~pvi~~Ggi-t~~~a~~~ 310 (367)
-.+. +.++.+.++|+|+|.+..+. +.. .....+....+..+.+. .++|||+.||+ ++.++.++
T Consensus 143 ---v~t~----~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kA 215 (325)
T cd00381 143 ---VVTA----EAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKA 215 (325)
T ss_pred ---CCCH----HHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Confidence 1123 35566778999999874221 111 11222344444444443 46899999999 89999999
Q ss_pred HHcCCCcEEcccHHHHhCCchH
Q 017733 311 VAANYTDLVAFGRLFLANPDLP 332 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~ 332 (367)
|+.| +|.|++||.|+.-.+-+
T Consensus 216 la~G-A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 216 LAAG-ADAVMLGSLLAGTDESP 236 (325)
T ss_pred HHcC-CCEEEecchhcccccCC
Confidence 9999 99999999999977655
No 55
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.81 E-value=6e-07 Score=82.59 Aligned_cols=77 Identities=23% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHhhhcCccEEEEecCCccccCCc--hhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 254 AKALNKFKLLYLHVIEPRMIQLTDK--SETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 254 ~~~L~~~Gvd~i~v~~~~~~~~~~~--~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
++.+.+.|+|++.++.......... ......++.+++.+++||++.||+ +++++.++++.| +|.|+++++++..++
T Consensus 115 ~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G-adgV~vgS~l~~~~e 193 (236)
T cd04730 115 ARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATEE 193 (236)
T ss_pred HHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CcEEEEchhhhcCcc
Confidence 4456668999998754321111111 123567888998889999999999 579999999988 999999999999886
Q ss_pred h
Q 017733 331 L 331 (367)
Q Consensus 331 l 331 (367)
.
T Consensus 194 ~ 194 (236)
T cd04730 194 S 194 (236)
T ss_pred c
Confidence 5
No 56
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.78 E-value=2e-07 Score=87.46 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++.+.++.+++.||..++|+.+.. ..-..++|++||+++|++ .|.+..|.
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKvg~~-------------------------~~~d~~~v~~vr~~~g~~~~l~vDan~--- 138 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKVGRD-------------------------PARDVAVVAALREAVGDDAELRVDANR--- 138 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCC-------------------------HHHHHHHHHHHHHhcCCCCEEEEeCCC---
Confidence 4566777888889999999986420 133478999999999875 45544443
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++.++++.|++.+++|++ ++. .+.+....+.+++.+++||++.+.+ +++++.++++.+.+
T Consensus 139 ------~~~~~~a~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~ 204 (265)
T cd03315 139 ------GWTPKQAIRALRALEDLGLDYVE--QPL------PADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAA 204 (265)
T ss_pred ------CcCHHHHHHHHHHHHhcCCCEEE--CCC------CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCC
Confidence 23578899999999999999998 331 1224566788999999999999988 89999999999999
Q ss_pred cEEcc
Q 017733 317 DLVAF 321 (367)
Q Consensus 317 D~V~~ 321 (367)
|+|.+
T Consensus 205 d~v~~ 209 (265)
T cd03315 205 DAVNI 209 (265)
T ss_pred CEEEE
Confidence 99876
No 57
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.78 E-value=1.7e-07 Score=90.22 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++.+.++.+++.||++|+|+.+. .. ....++|+++|+++| + .|.++.+.
T Consensus 136 ~~~~~~~~~~~~~Gf~~iKik~g~---------------------~~----~~d~~~v~~lr~~~g-~~~l~vD~n~--- 186 (316)
T cd03319 136 EAMAAAAKKAAKRGFPLLKIKLGG---------------------DL----EDDIERIRAIREAAP-DARLRVDANQ--- 186 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC---------------------Ch----hhHHHHHHHHHHhCC-CCeEEEeCCC---
Confidence 456778888888999999998742 11 234799999999998 5 56666654
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++.++++.|++.+++|++ ++. . +.....++++++.+++||++++.+ +++++.++++.+.+
T Consensus 187 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~-----~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~ 252 (316)
T cd03319 187 ------GWTPEEAVELLRELAELGVELIE--QPV-----P-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY 252 (316)
T ss_pred ------CcCHHHHHHHHHHHHhcCCCEEE--CCC-----C-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC
Confidence 23457899999999999999987 331 1 224556778999999999999988 89999999999999
Q ss_pred cEEccc
Q 017733 317 DLVAFG 322 (367)
Q Consensus 317 D~V~~g 322 (367)
|.|.+-
T Consensus 253 d~v~~~ 258 (316)
T cd03319 253 DGINIK 258 (316)
T ss_pred CEEEEe
Confidence 998653
No 58
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.76 E-value=2.2e-07 Score=91.35 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++++.|+++++.||++|+|+.+.+ . -.+...+.|++||+++|++ .|.|..|.
T Consensus 145 ~~~~~~a~~~~~~Gf~~~Kik~~~~--------------------~---~~~~di~~i~~vR~~~G~~~~l~vDan~--- 198 (368)
T cd03329 145 EAYADFAEECKALGYRAIKLHPWGP--------------------G---VVRRDLKACLAVREAVGPDMRLMHDGAH--- 198 (368)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCc--------------------h---hHHHHHHHHHHHHHHhCCCCeEEEECCC---
Confidence 4678888889999999999974321 0 0234689999999999987 57777664
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-C-HHHHHHHHHcCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-S-RDEGNKAVAANY 315 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t-~~~a~~~L~~G~ 315 (367)
..+.+++.++++.|++.++.|++ ++- .+........|++.+++||++...+ + ++++.++++.+.
T Consensus 199 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a 264 (368)
T cd03329 199 ------WYSRADALRLGRALEELGFFWYE--DPL------REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGA 264 (368)
T ss_pred ------CcCHHHHHHHHHHhhhcCCCeEe--CCC------CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCC
Confidence 33578899999999999999987 331 1223355668999999999887777 7 999999999999
Q ss_pred CcEEcc
Q 017733 316 TDLVAF 321 (367)
Q Consensus 316 ~D~V~~ 321 (367)
+|+|.+
T Consensus 265 ~d~v~~ 270 (368)
T cd03329 265 TDFLRA 270 (368)
T ss_pred CCEEec
Confidence 998843
No 59
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.70 E-value=4.2e-07 Score=84.05 Aligned_cols=145 Identities=16% Similarity=0.108 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcc--eEEEeCCCccccc
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAER--VGMRLSPYAECAE 240 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~--i~vrls~~~~~~~ 240 (367)
+.++.+.++|+|+|-|.... .++ .+.++++++.+|++. +++.+....-..
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~-----------------------~~~----~~~~~~i~~~~g~~~i~~sid~~~~~v~~- 140 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAA-----------------------VEN----PEIVRELSEEFGSERVMVSLDAKDGEVVI- 140 (241)
T ss_pred HHHHHHHHcCCCEEEEChHH-----------------------hhC----hHHHHHHHHHhCCCcEEEEEEeeCCEEEE-
Confidence 34566667999998763321 111 246677777777553 344332110000
Q ss_pred cCCCC-hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 241 AVDSN-PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 241 ~~~~~-~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
.++.. +..+..++++.+++.|++.++++........ ...+.+.++.+++.+++||+++||+ +++++.++++.| +|.
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G-a~g 218 (241)
T PRK13585 141 KGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAG-AAG 218 (241)
T ss_pred CCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCE
Confidence 01111 1113456888889999999998765332222 2245677889999999999999999 799999988887 999
Q ss_pred EcccHHHHhCCchHHHHHh
Q 017733 319 VAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 319 V~~gR~~ladP~l~~k~~~ 337 (367)
|++|++++.+|..+.+++.
T Consensus 219 v~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 219 VVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred EEEEHHHhcCCcCHHHHHH
Confidence 9999999999998877654
No 60
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.70 E-value=3.3e-07 Score=84.89 Aligned_cols=145 Identities=12% Similarity=0.033 Sum_probs=100.0
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
+.++++..+|++-|-+. ..+.+.+.++.+++++.++.+ .+.+.+....... .+
T Consensus 88 edv~~~l~~Ga~kvviG-----------------------s~~l~~p~l~~~i~~~~~~~i---~vsld~~~~~v~~-~G 140 (241)
T PRK14024 88 ESLEAALATGCARVNIG-----------------------TAALENPEWCARVIAEHGDRV---AVGLDVRGHTLAA-RG 140 (241)
T ss_pred HHHHHHHHCCCCEEEEC-----------------------chHhCCHHHHHHHHHHhhhhE---EEEEEEeccEecc-CC
Confidence 45566677899877542 334456778888888876543 1222221100000 01
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHH---cCCCcE
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVA---ANYTDL 318 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~---~G~~D~ 318 (367)
+.....+..++++.+++.|++.+-++..+.......+ +.+.++.+++.+++||+++||+ |++++.++++ .| +|.
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~G-vdg 218 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLG-VEG 218 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCC-ccE
Confidence 1112234567899999999999988877665555544 6788899999999999999999 8999998864 35 999
Q ss_pred EcccHHHHhCCchHHHHH
Q 017733 319 VAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 319 V~~gR~~ladP~l~~k~~ 336 (367)
|++||+++..+-=..+++
T Consensus 219 V~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 219 AIVGKALYAGAFTLPEAL 236 (241)
T ss_pred EEEeHHHHcCCCCHHHHH
Confidence 999999999986555544
No 61
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=5.6e-08 Score=93.60 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=113.0
Q ss_pred HhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHH
Q 017733 170 EAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEAL 249 (367)
Q Consensus 170 ~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~ 249 (367)
.--..|+++|+|| |--|.-...-|+.+...+.-+..|+..+.+.+. .++..|++. -++.++
T Consensus 104 ~nDvsgidiN~gC---------pK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~-vpvtckIR~---------L~s~ed 164 (477)
T KOG2334|consen 104 DNDVSGIDINMGC---------PKEFSIHGGMGAALLTDPDKLVAILYSLVKGNK-VPVTCKIRL---------LDSKED 164 (477)
T ss_pred hcccccccccCCC---------CCccccccCCCchhhcCHHHHHHHHHHHHhcCc-ccceeEEEe---------cCCccc
Confidence 3447789999999 777777778888888778888889998888773 355555543 124566
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-C---HHHHHHHHHcCCCcEEcccHH
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-S---RDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t---~~~a~~~L~~G~~D~V~~gR~ 324 (367)
++++.+++.+.|+..|.+|.++......++.....++.+.+.++ +||+++|+. + ..|.+...+....|.|+++|.
T Consensus 165 tL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~ 244 (477)
T KOG2334|consen 165 TLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARA 244 (477)
T ss_pred HHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHh
Confidence 78899999999999999998887766666667778888888887 899999986 5 345566666666999999999
Q ss_pred HHhCCchHH
Q 017733 325 FLANPDLPK 333 (367)
Q Consensus 325 ~ladP~l~~ 333 (367)
+..||-.+.
T Consensus 245 A~~n~SiF~ 253 (477)
T KOG2334|consen 245 AESNPSIFR 253 (477)
T ss_pred hhcCCceee
Confidence 999997554
No 62
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.68 E-value=7.2e-07 Score=85.62 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhCC--CEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEE-eCCCcc
Q 017733 161 FRLAARNAIEAGF--DGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMR-LSPYAE 237 (367)
Q Consensus 161 f~~aA~~a~~aGf--dgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vr-ls~~~~ 237 (367)
..+-+....+||. |.|.|.++||+ ...+.++|+.||+..+..+|.+. +.
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~gh------------------------~~~~~e~I~~ir~~~p~~~vi~g~V~---- 149 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHGH------------------------SDSVINMIQHIKKHLPETFVIAGNVG---- 149 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCc------------------------hHHHHHHHHHHHhhCCCCeEEEEecC----
Confidence 3456666777865 99999998852 24568889999999864455442 22
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCc----cc--cCCchh--hHHHHHHHHHhcCCcEEEeCCC-CHHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRM----IQ--LTDKSE--TQRSLLSMRRAFEGTFIAAGGY-SRDEGN 308 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~----~~--~~~~~~--~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~ 308 (367)
+.+ -++.|.++|+|++.++.+.- +. .....+ ....+..+++.+++|||+.||+ ++.++.
T Consensus 150 --------t~e----~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~ 217 (326)
T PRK05458 150 --------TPE----AVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA 217 (326)
T ss_pred --------CHH----HHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHH
Confidence 233 45567789999987753221 11 111122 2335777888889999999999 899999
Q ss_pred HHHHcCCCcEEcccHHHHhCCc
Q 017733 309 KAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 309 ~~L~~G~~D~V~~gR~~ladP~ 330 (367)
++|+.| +|+|++|++++.-.+
T Consensus 218 KaLa~G-A~aV~vG~~~~~~~e 238 (326)
T PRK05458 218 KSIRFG-ATMVMIGSLFAGHEE 238 (326)
T ss_pred HHHHhC-CCEEEechhhcCCcc
Confidence 999998 999999999985443
No 63
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.67 E-value=2e-07 Score=86.71 Aligned_cols=152 Identities=14% Similarity=0.047 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCC--c---
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY--A--- 236 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~--~--- 236 (367)
+++|+.|.++|||.|-++.+|. +..|... |-++.+.+ +.|++||+++. -||..+..-. .
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~p----------sd~~~~g-g~~Rm~~p----~~I~aIk~~V~-iPVigk~Righ~~Ea~ 90 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVP----------ADIRAAG-GVARMADP----KMIEEIMDAVS-IPVMAKARIGHFVEAQ 90 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCC----------chHhhcC-CeeecCCH----HHHHHHHHhCC-CCeEEeehhhHHHHHH
Confidence 6899999999999999999994 3445554 55666655 55568899883 3655544321 0
Q ss_pred -------cccccCC-CChHHHHHHHHHH------------------hhhcCccEEEEe----------------------
Q 017733 237 -------ECAEAVD-SNPEALGLYMAKA------------------LNKFKLLYLHVI---------------------- 268 (367)
Q Consensus 237 -------~~~~~~~-~~~~~~~~~l~~~------------------L~~~Gvd~i~v~---------------------- 268 (367)
++.+... ..|.++.....+. -.+.|+|+|..+
T Consensus 91 ~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i 170 (293)
T PRK04180 91 ILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEI 170 (293)
T ss_pred HHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHH
Confidence 0101000 0011111111111 123455555443
Q ss_pred --cCCccccC------CchhhHHHHHHHHHhcCCcEE--EeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 269 --EPRMIQLT------DKSETQRSLLSMRRAFEGTFI--AAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 269 --~~~~~~~~------~~~~~~~~~~~ir~~~~~pvi--~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
...+.... ......+.++.+++..++||+ +.||+ ||+++..+++.| +|.|.++++++..++
T Consensus 171 ~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G-AdgVaVGSaI~ks~d 242 (293)
T PRK04180 171 RRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG-ADGVFVGSGIFKSGD 242 (293)
T ss_pred HHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC-CCEEEEcHHhhcCCC
Confidence 00010000 011233567788888889997 99999 999999999998 999999999995444
No 64
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.64 E-value=6.1e-07 Score=81.95 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=91.5
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
+.++.++++|.|.|-+..... + +.+ | ..+.++++++|+. ...++.+..+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~-----------~-~p~--~-------~~~~~~i~~~~~~-~~i~vi~~v~--------- 127 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLR-----------P-RPD--G-------ETLAELVKRIKEY-PGQLLMADCS--------- 127 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCC-----------C-CCC--C-------CCHHHHHHHHHhC-CCCeEEEeCC---------
Confidence 456788899999998765431 0 000 0 2357889999886 3225554332
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCcccc--CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL--TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 319 (367)
+.++ ++.+.+.|+||+.++....... .........++.+++.+++||++.||+ |+++++++++.| +|+|
T Consensus 128 ---t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G-adgV 199 (221)
T PRK01130 128 ---TLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELG-AHAV 199 (221)
T ss_pred ---CHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC-CCEE
Confidence 2333 3467789999997643322111 122234567889999999999999999 899999999999 9999
Q ss_pred cccHHHHhCCchHHHHH
Q 017733 320 AFGRLFLANPDLPKRFE 336 (367)
Q Consensus 320 ~~gR~~ladP~l~~k~~ 336 (367)
++|+.+ .+|+++.|..
T Consensus 200 ~iGsai-~~~~~~~~~~ 215 (221)
T PRK01130 200 VVGGAI-TRPEEITKWF 215 (221)
T ss_pred EEchHh-cCCHHHHHHH
Confidence 999985 5676666543
No 65
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.63 E-value=1.2e-06 Score=85.78 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh-hHHHHHH
Q 017733 209 CRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE-TQRSLLS 287 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~-~~~~~~~ 287 (367)
..++.++|+++|++ + -.+.+|+++ .++.++++.+.++|+|+|.+|.++..+.+.... ++..+..
T Consensus 117 p~l~~~iv~~~~~~-~-V~v~vr~~~-------------~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~ 181 (368)
T PRK08649 117 PELITERIAEIRDA-G-VIVAVSLSP-------------QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKE 181 (368)
T ss_pred HHHHHHHHHHHHhC-e-EEEEEecCC-------------cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHH
Confidence 56789999999995 2 345666654 124568889999999999998776544433222 3344555
Q ss_pred HHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHH
Q 017733 288 MRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 288 ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
+++..++|||+ |++ |+++++++++.| ||.|.+||+-
T Consensus 182 ~ik~~~ipVIa-G~V~t~e~A~~l~~aG-AD~V~VG~G~ 218 (368)
T PRK08649 182 FIYELDVPVIV-GGCVTYTTALHLMRTG-AAGVLVGIGP 218 (368)
T ss_pred HHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence 55567899998 556 999999999988 9999999763
No 66
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.62 E-value=1.1e-06 Score=80.74 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=67.4
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+++.|++++.++..+....... .+...++.+++.+++||+++||+ +++++.++++.| +|.|++||+++.+
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~vg~~~~~~ 225 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAATGIPVIASGGVSSLDDIKALKELG-VAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC-CCEEEEeHHHHcC
Confidence 45688889999999998875543333333 45678889999999999999999 899999999987 9999999999999
Q ss_pred CchHHH
Q 017733 329 PDLPKR 334 (367)
Q Consensus 329 P~l~~k 334 (367)
+.=+.+
T Consensus 226 ~~~~~~ 231 (234)
T cd04732 226 KITLEE 231 (234)
T ss_pred CCCHHH
Confidence 854443
No 67
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.58 E-value=1.2e-05 Score=78.20 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCEEEEecccchHH-------HhhcCcc-cccCC--CCCCCc-hhh------HhHHHHHHHHHHHHHhC
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLI-------DQFMKDQ-VNDRT--DEYGGS-LEN------RCRFALEVVEAVVREIG 224 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl-------~qFlsp~-~N~R~--D~yGgs-~en------r~r~~~eii~aiR~~vg 224 (367)
.+..++|+++||+++-|+.....+- ..|-.|. .+.+. +.+.++ ... ......+.|+.+|+..+
T Consensus 134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 213 (344)
T cd02922 134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTK 213 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcC
Confidence 4556788899999999987664221 1111110 00000 001111 000 12245688999999884
Q ss_pred CcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh---c--CCcEEEe
Q 017733 225 AERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA---F--EGTFIAA 299 (367)
Q Consensus 225 ~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~---~--~~pvi~~ 299 (367)
.||.||--. +.+ -++.+.+.|+|.|.+++..-.......+....+..+++. + ++|||+.
T Consensus 214 -~PvivKgv~-----------~~~----dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~ 277 (344)
T cd02922 214 -LPIVLKGVQ-----------TVE----DAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD 277 (344)
T ss_pred -CcEEEEcCC-----------CHH----HHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 478887221 233 345667899999999764321111112222344445542 2 4899999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 300 GGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 300 Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
||+ +..++.++|.-| +|+|++||+++..+.
T Consensus 278 GGIr~G~Dv~kalaLG-A~aV~iG~~~l~~l~ 308 (344)
T cd02922 278 GGVRRGTDVLKALCLG-AKAVGLGRPFLYALS 308 (344)
T ss_pred CCCCCHHHHHHHHHcC-CCEEEECHHHHHHHh
Confidence 999 899999999999 999999999999886
No 68
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.57 E-value=8.8e-07 Score=82.07 Aligned_cols=81 Identities=14% Similarity=0.031 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHH
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.+..++++.+++.|+|++.++........ ...+...++.+++.+++||+++||+ ++++++++++.+.+|.|++||++.
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~-~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTK-KGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCC-CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 34567889999999999999765432222 2235678888999999999999999 899999999985599999999988
Q ss_pred hCC
Q 017733 327 ANP 329 (367)
Q Consensus 327 adP 329 (367)
..-
T Consensus 228 ~~~ 230 (243)
T cd04731 228 FGE 230 (243)
T ss_pred cCC
Confidence 753
No 69
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.56 E-value=3.3e-07 Score=84.92 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=74.2
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+++.|++.++++..+... ...+.+...++.+++.+++||+++||+ +.+++++++..| +|.|.+||+++.|
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~-~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~~~~ 106 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASS-EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAAVEN 106 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCccc-ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchhhhC
Confidence 4568999999999999887665422 223446778899999999999999999 899999999998 9999999999999
Q ss_pred CchHHHHHhC
Q 017733 329 PDLPKRFELN 338 (367)
Q Consensus 329 P~l~~k~~~g 338 (367)
|+++.++.+.
T Consensus 107 p~~~~~i~~~ 116 (243)
T cd04731 107 PELIREIAKR 116 (243)
T ss_pred hHHHHHHHHH
Confidence 9999998774
No 70
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.55 E-value=1.5e-06 Score=84.91 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++++.|+.+++.||.+++|..+.. .+.-.+.|++||+++|++ .|.|..|.
T Consensus 140 e~~~~~a~~~~~~Gf~~~Kikvg~~-------------------------~~~d~~~v~~vRe~~G~~~~l~vDaN~--- 191 (352)
T cd03328 140 DRLREQLSGWVAQGIPRVKMKIGRD-------------------------PRRDPDRVAAARRAIGPDAELFVDANG--- 191 (352)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCC-------------------------HHHHHHHHHHHHHHcCCCCeEEEECCC---
Confidence 3456667777789999999975320 134589999999999986 57766654
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh--cCCcEEEeCCC-CHHHHHHHHHcC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA--FEGTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~--~~~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
..+.+++.++++.|++.++.|++ ++- .+.+....+.+++. +++||.+...+ +..++.++++.+
T Consensus 192 ------~~~~~~A~~~~~~l~~~~~~~~E--eP~------~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~ 257 (352)
T cd03328 192 ------AYSRKQALALARAFADEGVTWFE--EPV------SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH 257 (352)
T ss_pred ------CCCHHHHHHHHHHHHHhCcchhh--CCC------ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC
Confidence 33578899999999999998887 331 22345667889999 78999988877 899999999999
Q ss_pred CCcEEcc
Q 017733 315 YTDLVAF 321 (367)
Q Consensus 315 ~~D~V~~ 321 (367)
.+|+|.+
T Consensus 258 a~div~~ 264 (352)
T cd03328 258 AVDVLQA 264 (352)
T ss_pred CCCEEec
Confidence 9998843
No 71
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.53 E-value=2.6e-06 Score=82.78 Aligned_cols=102 Identities=21% Similarity=0.097 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 211 FALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 211 ~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.-+.|+++|+.++ .||.+|--. +.+ .++.+.+.|+|+|.+++..-.+.+..+.....+..|++
T Consensus 208 ~~~~~l~~lr~~~~-~PvivKgv~-----------~~~----dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~ 271 (351)
T cd04737 208 LSPADIEFIAKISG-LPVIVKGIQ-----------SPE----DADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAE 271 (351)
T ss_pred CCHHHHHHHHHHhC-CcEEEecCC-----------CHH----HHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHH
Confidence 45688999999985 488888311 123 45567789999999964322222233334566777888
Q ss_pred hc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 291 AF--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 291 ~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
++ ++||++.||+ +..++.++|+.| +|+|++||+++...
T Consensus 272 a~~~~i~vi~dGGIr~g~Di~kaLalG-A~~V~iGr~~l~~l 312 (351)
T cd04737 272 AVNHRVPIIFDSGVRRGEHVFKALASG-ADAVAVGRPVLYGL 312 (351)
T ss_pred HhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence 77 5899999999 899999999999 99999999999864
No 72
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.52 E-value=1.5e-06 Score=79.86 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=64.1
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+++.|++.+-++..+....... .+...++.+++.+++||+++||+ ++++++++++.|.+|.|++||+++..
T Consensus 148 ~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 148 AEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 34688889999999877765544333333 46778899999999999999999 89999999999889999999998764
No 73
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.52 E-value=2.9e-06 Score=82.58 Aligned_cols=127 Identities=16% Similarity=0.247 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++++.|+.+++.||..++|..+.| + ...+ ...+.-.+.|++||+++|++ .|.+..|.
T Consensus 122 ~~~~~~a~~~~~~Gf~~~Kikvg~~--------~-~~~~---------~~~~~d~~~v~avr~~~g~~~~l~vDan~--- 180 (341)
T cd03327 122 DELPDEAKEYLKEGYRGMKMRFGYG--------P-SDGH---------AGLRKNVELVRAIREAVGYDVDLMLDCYM--- 180 (341)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC--------C-Ccch---------HHHHHHHHHHHHHHHHhCCCCcEEEECCC---
Confidence 4456777778889999999987543 1 0000 11345689999999999986 56666554
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++.++++.|++.++.|++ ++. .+.+....+.+++.+++||.+...+ ++.++.++++.+.+
T Consensus 181 ------~~~~~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~ 246 (341)
T cd03327 181 ------SWNLNYAIKMARALEKYELRWIE--EPL------IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAV 246 (341)
T ss_pred ------CCCHHHHHHHHHHhhhcCCcccc--CCC------CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCC
Confidence 23578899999999999998887 442 1234566778999999999998887 89999999999989
Q ss_pred cEEc
Q 017733 317 DLVA 320 (367)
Q Consensus 317 D~V~ 320 (367)
|+|.
T Consensus 247 d~i~ 250 (341)
T cd03327 247 DILQ 250 (341)
T ss_pred CEEe
Confidence 9885
No 74
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.49 E-value=2.6e-06 Score=78.37 Aligned_cols=75 Identities=16% Similarity=0.040 Sum_probs=60.1
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHH
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
..++++.+++.|+|++.++......... ..+...++.+++.+++||+++||+ +++++++++....+|.|++|++|
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~-g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMK-GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcC-CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 4678899999999999998643322222 236778899999999999999999 89999995555559999999986
No 75
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.48 E-value=7.6e-07 Score=83.05 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=74.5
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+++.|++.++++..+..... ...+.+.++.+++.+++||+++||+ |.+++++++..| +|.|.+|+.++.||
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~-~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~G-a~~Viigt~~l~~p 110 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEG-RDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAG-ADKVSINSAAVANP 110 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccc-CcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcC-CCEEEEChhHhhCc
Confidence 45888888999999999877653222 2457788999999999999999999 899999999988 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
++++++.+.
T Consensus 111 ~~~~ei~~~ 119 (253)
T PRK02083 111 ELISEAADR 119 (253)
T ss_pred HHHHHHHHH
Confidence 999999875
No 76
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=98.48 E-value=2.9e-06 Score=83.61 Aligned_cols=122 Identities=22% Similarity=0.268 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+.++++++...+.||+.++|..+++. ...-++.|++||+++|++ .|.|..|.
T Consensus 145 e~~~~~~~~~~~~G~~~~Klk~g~~~------------------------~~~d~~~v~avRe~~g~~~~l~iDan~--- 197 (372)
T COG4948 145 EMAAEAARALVELGFKALKLKVGVGD------------------------GDEDLERVRALREAVGDDVRLMVDANG--- 197 (372)
T ss_pred HHHHHHHHHHHhcCCceEEecCCCCc------------------------hHHHHHHHHHHHHHhCCCceEEEeCCC---
Confidence 56777888888899999999987731 114589999999999965 67776665
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++..+++.|++.++.|++ +|. .+.+....+.+++.+++||.+...+ +.+++.++++.|.+
T Consensus 198 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~ 263 (372)
T COG4948 198 ------GWTLEEAIRLARALEEYGLEWIE--EPL------PPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAV 263 (372)
T ss_pred ------CcCHHHHHHHHHHhcccCcceEE--CCC------CccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCC
Confidence 34567789999999999999988 442 2235567888999888999998887 99999999999999
Q ss_pred cEEcc
Q 017733 317 DLVAF 321 (367)
Q Consensus 317 D~V~~ 321 (367)
|+|.+
T Consensus 264 div~~ 268 (372)
T COG4948 264 DIVQP 268 (372)
T ss_pred CeecC
Confidence 98865
No 77
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.47 E-value=1.4e-06 Score=85.23 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++.+.|+.+.+.||..++|..+. . + .+--.+.|++||+++|++ .|.+..|.
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~---------------~-----~----~~~d~~~v~air~~~g~~~~l~vDaN~--- 195 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGY---------------P-----T----ADEDLAVVRSIRQAVGDGVGLMVDYNQ--- 195 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCC---------------C-----C----hHhHHHHHHHHHHhhCCCCEEEEeCCC---
Confidence 345677777788899999997642 0 1 123478899999999986 46665553
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++.++++.|++.+++||+ ++. .+.+....+.+++.+++||.+...+ ++.++..+++.+.+
T Consensus 196 ------~~~~~~A~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~ 261 (355)
T cd03321 196 ------SLTVPEAIERGQALDQEGLTWIE--EPT------LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGAC 261 (355)
T ss_pred ------CcCHHHHHHHHHHHHcCCCCEEE--CCC------CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCC
Confidence 33577899999999999999998 442 1234566788999999999888777 89999999999989
Q ss_pred cEEcc
Q 017733 317 DLVAF 321 (367)
Q Consensus 317 D~V~~ 321 (367)
|+|.+
T Consensus 262 d~i~~ 266 (355)
T cd03321 262 DLVMP 266 (355)
T ss_pred CeEec
Confidence 98754
No 78
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.47 E-value=1.8e-06 Score=78.82 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+.++.+.++|.|.|.+..... .+.+ ...+.++++++|+.. ..++.+...
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~------------~~p~---------~~~~~~~i~~~~~~g-~~~iiv~v~-------- 131 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDR------------PRPD---------GETLAELIKRIHEEY-NCLLMADIS-------- 131 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC------------CCCC---------CcCHHHHHHHHHHHh-CCeEEEECC--------
Confidence 4466788899999999865331 0111 024578999999876 335554322
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccc--cCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ--LTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~--~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
+.++ +..+.+.|+||+.+....... ..........++.+++.+++||+++||+ ++++++++++.| +|.
T Consensus 132 ----t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G-adg 202 (219)
T cd04729 132 ----TLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELG-ADA 202 (219)
T ss_pred ----CHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC-CCE
Confidence 2333 345677899999653221111 1112234578889999999999999999 899999999999 999
Q ss_pred EcccHHHHhCCchH
Q 017733 319 VAFGRLFLANPDLP 332 (367)
Q Consensus 319 V~~gR~~ladP~l~ 332 (367)
|++|++++...+..
T Consensus 203 V~vGsal~~~~~~~ 216 (219)
T cd04729 203 VVVGSAITRPEHIT 216 (219)
T ss_pred EEEchHHhChHhHh
Confidence 99999976655443
No 79
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.46 E-value=8.6e-07 Score=81.50 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=73.8
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+.+.|+|.+|++..+... .....+...++.+++.+++||+++||+ ++++++++++.| +|.|.+++.++.|
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~~~-~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~l~d 108 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDGAK-GGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAAVKN 108 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCccc-cCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchHHhC
Confidence 4568888999999999998554321 123446778899999999999999999 899999999999 9999999999999
Q ss_pred CchHHHHHhC
Q 017733 329 PDLPKRFELN 338 (367)
Q Consensus 329 P~l~~k~~~g 338 (367)
|++..++.+.
T Consensus 109 p~~~~~i~~~ 118 (234)
T cd04732 109 PELVKELLKE 118 (234)
T ss_pred hHHHHHHHHH
Confidence 9999998875
No 80
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.45 E-value=2.8e-06 Score=83.95 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++++.|+.+++.||.+++|+.+. .+ .+.-.+.|+++|+++|++ .|.|..|.
T Consensus 162 ~~~~~~a~~~~~~Gf~~~Kikvg~--------------------~~----~~~di~~v~avRe~~G~~~~l~vDaN~--- 214 (385)
T cd03326 162 GRLRDEMRRYLDRGYTVVKIKIGG--------------------AP----LDEDLRRIEAALDVLGDGARLAVDANG--- 214 (385)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC--------------------CC----HHHHHHHHHHHHHhcCCCCeEEEECCC---
Confidence 345666677778999999997642 01 233489999999999987 57776654
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++.++++.|++.++.|++ ++- .+.+....+.+++.+++||.+...+ ++.++.++++.+.+
T Consensus 215 ------~w~~~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~ 280 (385)
T cd03326 215 ------RFDLETAIAYAKALAPYGLRWYE--EPG------DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGM 280 (385)
T ss_pred ------CCCHHHHHHHHHHhhCcCCCEEE--CCC------CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCc
Confidence 33578899999999999999988 442 1234566788999999999998887 89999999999876
Q ss_pred ----cEEc
Q 017733 317 ----DLVA 320 (367)
Q Consensus 317 ----D~V~ 320 (367)
|+|.
T Consensus 281 ~~~~div~ 288 (385)
T cd03326 281 RPDRDVLQ 288 (385)
T ss_pred cccCCEEE
Confidence 8874
No 81
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.43 E-value=3.8e-06 Score=78.61 Aligned_cols=81 Identities=23% Similarity=0.153 Sum_probs=65.9
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHH-HcCCCcEEcccHHHHh
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAV-AANYTDLVAFGRLFLA 327 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L-~~G~~D~V~~gR~~la 327 (367)
..++++.+++.|++.+-++..+....... ++.+.++.+++.+++||+++||+ +.+++.+++ +.| +|.|.+|++|.-
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~G-vdgVivg~a~~~ 231 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLG-ADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCC-CCEEEEcceeee
Confidence 35688889999999998886655444443 36778899999999999999999 899999999 565 999999999988
Q ss_pred CCchH
Q 017733 328 NPDLP 332 (367)
Q Consensus 328 dP~l~ 332 (367)
.-+-+
T Consensus 232 ~~~~~ 236 (258)
T PRK01033 232 KGVYK 236 (258)
T ss_pred Ccccc
Confidence 73333
No 82
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.43 E-value=4.1e-06 Score=76.91 Aligned_cols=77 Identities=17% Similarity=0.046 Sum_probs=63.0
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+++.|++.+.++..+...... ..+...++.+++.+++||+++||+ ++++++++++.| +|.|++||+++.+
T Consensus 147 ~~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G-adgv~ig~a~~~~ 224 (230)
T TIGR00007 147 LEELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLG-VYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEeHHHHcC
Confidence 3468888999999988877554433322 245778888999999999999999 899999999887 9999999999876
No 83
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.43 E-value=5.7e-06 Score=77.25 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=92.7
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCcc--
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAE-- 237 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~-- 237 (367)
.+.++.+.++|++.|-|..+- ... .++++.+.+..|+. .+.+.+...+.
T Consensus 86 ~~d~~~~~~~Ga~~vivgt~~-----------------------~~~----p~~~~~~~~~~~~~~iv~slD~~~g~~~~ 138 (254)
T TIGR00735 86 IEDVDKLLRAGADKVSINTAA-----------------------VKN----PELIYELADRFGSQCIVVAIDAKRVYVNS 138 (254)
T ss_pred HHHHHHHHHcCCCEEEEChhH-----------------------hhC----hHHHHHHHHHcCCCCEEEEEEeccCCCCC
Confidence 455667777899999864321 111 34556666666744 34444322100
Q ss_pred ---cc---ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHH
Q 017733 238 ---CA---EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKA 310 (367)
Q Consensus 238 ---~~---~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~ 310 (367)
+. ..+......+..++++.+++.|+|.|.++....... ....+...++.+++.+++||+++||+ ++++++++
T Consensus 139 ~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~-~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~ 217 (254)
T TIGR00735 139 YCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT-KSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEA 217 (254)
T ss_pred CccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC-CCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH
Confidence 00 001111223456789999999999998875433221 22345678899999999999999999 89999999
Q ss_pred HHcCCCcEEcccHHHHhC
Q 017733 311 VAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 311 L~~G~~D~V~~gR~~lad 328 (367)
++.|.+|.|++|+.+...
T Consensus 218 ~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 218 FTKGKADAALAASVFHYR 235 (254)
T ss_pred HHcCCcceeeEhHHHhCC
Confidence 999999999999997654
No 84
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.40 E-value=1.1e-05 Score=77.30 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=88.7
Q ss_pred HHHHHHhC--CCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 165 ARNAIEAG--FDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 165 A~~a~~aG--fdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
+....++| .|.|-|..+||+ .+.+++.|+.+|+..+ .++.+.=+.
T Consensus 99 ~~~lv~a~~~~d~i~~D~ahg~------------------------s~~~~~~i~~i~~~~p-~~~vi~GnV-------- 145 (321)
T TIGR01306 99 VTQLAEEALTPEYITIDIAHGH------------------------SNSVINMIKHIKTHLP-DSFVIAGNV-------- 145 (321)
T ss_pred HHHHHhcCCCCCEEEEeCccCc------------------------hHHHHHHHHHHHHhCC-CCEEEEecC--------
Confidence 33445677 699999999974 4567999999999885 332221111
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCC---cccc-----CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHc
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQL-----TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAA 313 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~~-----~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~ 313 (367)
.+ .+.++.|.++|+|.|.++.+. ++.. ....+....+..+++..++|||+.||+ +..++.++|+.
T Consensus 146 --~t----~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~ 219 (321)
T TIGR01306 146 --GT----PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF 219 (321)
T ss_pred --CC----HHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHc
Confidence 12 346677888999999887332 1110 111223456777888889999999999 79999999999
Q ss_pred CCCcEEcccHHHHhCC
Q 017733 314 NYTDLVAFGRLFLANP 329 (367)
Q Consensus 314 G~~D~V~~gR~~ladP 329 (367)
| +|+|++||.|..--
T Consensus 220 G-Ad~Vmig~~~ag~~ 234 (321)
T TIGR01306 220 G-ASMVMIGSLFAGHE 234 (321)
T ss_pred C-CCEEeechhhcCcc
Confidence 8 99999999986543
No 85
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.40 E-value=7.8e-06 Score=81.58 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++++.|+.+.+.||.+++|+.+. + .+.-.+.|+++|+++|++ .|.|..|.
T Consensus 198 ~~~~~~a~~~~~~Gf~~~KiKvg~---------------------~----~~~d~~~v~avRe~vG~~~~L~vDaN~--- 249 (415)
T cd03324 198 EKLRRLCKEALAQGFTHFKLKVGA---------------------D----LEDDIRRCRLAREVIGPDNKLMIDANQ--- 249 (415)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---------------------C----HHHHHHHHHHHHHhcCCCCeEEEECCC---
Confidence 345666777778899999997531 1 234578999999999986 47776654
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc---CCcEEEeCCC-CHHHHHHHHHc
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF---EGTFIAAGGY-SRDEGNKAVAA 313 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~---~~pvi~~Ggi-t~~~a~~~L~~ 313 (367)
..+.+++.++++.|++.++.|++ ++. .+.+....+.+++.+ ++||.+...+ ++.++.++++.
T Consensus 250 ------~w~~~~A~~~~~~L~~~~l~~iE--EP~------~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~ 315 (415)
T cd03324 250 ------RWDVPEAIEWVKQLAEFKPWWIE--EPT------SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA 315 (415)
T ss_pred ------CCCHHHHHHHHHHhhccCCCEEE--CCC------CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc
Confidence 33578899999999999999988 442 122445677788887 5898887776 89999999999
Q ss_pred CCCcEEc
Q 017733 314 NYTDLVA 320 (367)
Q Consensus 314 G~~D~V~ 320 (367)
+.+|++.
T Consensus 316 ~a~dil~ 322 (415)
T cd03324 316 GAIDVVQ 322 (415)
T ss_pred CCCCEEE
Confidence 9899885
No 86
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.39 E-value=1.8e-06 Score=80.59 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=73.5
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+++.|++.+|++.-.... .....+...++.+++.+++||+++||+ +.+++++++..| +|.|.+|+.++.||
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G-a~~vivgt~~~~~p 110 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASS-EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAG-ADKVSINTAAVKNP 110 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCccc-ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhhCh
Confidence 458888999999999998664331 133456778899999999999999999 899999999998 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
++++++.+.
T Consensus 111 ~~~~~~~~~ 119 (254)
T TIGR00735 111 ELIYELADR 119 (254)
T ss_pred HHHHHHHHH
Confidence 999998763
No 87
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.37 E-value=1.8e-05 Score=70.17 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC-cceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA-ERVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~-~~i~vrls~~~~ 237 (367)
++..+.++.|+++|+|+|.+....++..++ +.+.+.+.+++|+++++. .++.+...+..
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~- 124 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSLKEG-------------------DWEEVLEEIAAVVEAADGGLPLKVILETRG- 124 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHHhCC-------------------CHHHHHHHHHHHHHHhcCCceEEEEEECCC-
Confidence 566888999999999999998755433221 356789999999998722 37888777631
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc--CCcEEEeCCC-CHHHHHHHHHcC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF--EGTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
..+.++..++++.+.+.|+++|..+.+... .......++.+++.+ +.++++.||+ +++.+.+++..|
T Consensus 125 ------~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~----~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~G 194 (201)
T cd00945 125 ------LKTADEIAKAARIAAEAGADFIKTSTGFGG----GGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAG 194 (201)
T ss_pred ------CCCHHHHHHHHHHHHHhCCCEEEeCCCCCC----CCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhc
Confidence 124566677777778889999987644221 112345667788777 5689999999 599999999998
Q ss_pred CCcEEccc
Q 017733 315 YTDLVAFG 322 (367)
Q Consensus 315 ~~D~V~~g 322 (367)
+|.+++|
T Consensus 195 -a~g~~~g 201 (201)
T cd00945 195 -ADGIGTS 201 (201)
T ss_pred -cceeecC
Confidence 8988765
No 88
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.35 E-value=9.8e-06 Score=79.05 Aligned_cols=101 Identities=22% Similarity=0.145 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 211 FALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 211 ~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.-+-|+++|+.++ .||.||= . . .. +.++.+.++|+|.|.|+...-.+.+..+.....+..+++
T Consensus 215 ~~w~~i~~l~~~~~-~PvivKG-v---------~-~~----eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~ 278 (367)
T TIGR02708 215 LSPRDIEEIAGYSG-LPVYVKG-P---------Q-CP----EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAE 278 (367)
T ss_pred CCHHHHHHHHHhcC-CCEEEeC-C---------C-CH----HHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHH
Confidence 44578999999875 4788872 1 1 12 355667789999987765433333334444567788888
Q ss_pred hcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 291 AFE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 291 ~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
.++ +||+++||+ +..++.++|+-| +|+|++||+++.-
T Consensus 279 av~~~i~vi~dGGIr~g~Dv~KaLalG-Ad~V~igR~~l~~ 318 (367)
T TIGR02708 279 AVDKRVPIVFDSGVRRGQHVFKALASG-ADLVALGRPVIYG 318 (367)
T ss_pred HhCCCCcEEeeCCcCCHHHHHHHHHcC-CCEEEEcHHHHHH
Confidence 774 899999999 899999999998 9999999997763
No 89
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.33 E-value=0.00016 Score=68.38 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=119.2
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+.++-+++++.+.++++++|+...... + .+...+.+ +.+|.. +...+. .+
T Consensus 28 ~e~~~avi~aAe~~~~Pvii~~~~~~~~----~--~~~~~~~~~~~~~a~~~~vpv~-----lHlDH~--~~-------- 86 (281)
T PRK06806 28 MEMVMGAIKAAEELNSPIILQIAEVRLN----H--SPLHLIGPLMVAAAKQAKVPVA-----VHFDHG--MT-------- 86 (281)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhc----c--CChHHHHHHHHHHHHHCCCCEE-----EECCCC--CC--------
Confidence 4577888999999999999999653211 0 00000000 011110 001111 11
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
.+.+++|.++||+.|.+-+.+ -+++...+.+.++++-.++.-=+- .=+..+...++
T Consensus 87 ---~e~i~~Al~~G~tsVm~d~s~--------------------~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~ 143 (281)
T PRK06806 87 ---FEKIKEALEIGFTSVMFDGSH--------------------LPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSED 143 (281)
T ss_pred ---HHHHHHHHHcCCCEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccC
Confidence 234556778899999986543 134566777777777777651011 11224443332
Q ss_pred ccccCC--CChHHHHHHHHHHhhhcCccEEEEecCCccccCCc--hhhHHHHHHHHHhcCCcEEEeC--CCCHHHHHHHH
Q 017733 238 CAEAVD--SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK--SETQRSLLSMRRAFEGTFIAAG--GYSRDEGNKAV 311 (367)
Q Consensus 238 ~~~~~~--~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~--~~~~~~~~~ir~~~~~pvi~~G--git~~~a~~~L 311 (367)
..+..+ ..+.+++.+++ ++.|+||+-++-++....+.. .-..+.++.+++.+++|+++-| |++.++..+++
T Consensus 144 ~~~~~g~s~t~~eea~~f~---~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i 220 (281)
T PRK06806 144 GSEDIEMLLTSTTEAKRFA---EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCI 220 (281)
T ss_pred CcccccceeCCHHHHHHHH---HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 211101 12455554444 347999999866664433322 2345778999999999999999 99999999999
Q ss_pred HcCCCcEEcccHHHHhCC
Q 017733 312 AANYTDLVAFGRLFLANP 329 (367)
Q Consensus 312 ~~G~~D~V~~gR~~ladP 329 (367)
+.| ++-|.+.+.+..+|
T Consensus 221 ~~G-~~kinv~T~i~~a~ 237 (281)
T PRK06806 221 QHG-IRKINVATATFNSV 237 (281)
T ss_pred HcC-CcEEEEhHHHHHHH
Confidence 999 99999999999864
No 90
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=98.32 E-value=2.1e-05 Score=78.41 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhc--Ccc----cccCCCC---CC-C-chhhHhHHHHHHHHHHHHHhCCc-c
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFM--KDQ----VNDRTDE---YG-G-SLENRCRFALEVVEAVVREIGAE-R 227 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFl--sp~----~N~R~D~---yG-g-s~enr~r~~~eii~aiR~~vg~~-~ 227 (367)
++.+.|+.+.+.||.+++|+.+..-+ .... ++. .+.-.|. +. + ..+.-.+...+.|++||+++|++ .
T Consensus 130 ~~~~~a~~~~~~Gf~~~KiKvg~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~ 208 (404)
T PRK15072 130 ELLDDVARHLELGYKAIRVQCGVPGL-KTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLH 208 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCce
Confidence 45566677778999999998753100 0000 000 0000010 00 0 11223466789999999999976 4
Q ss_pred eEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHH
Q 017733 228 VGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDE 306 (367)
Q Consensus 228 i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~ 306 (367)
|.+..|. ..+.+++.++++.|++.++.|++ ++. .+......+.+++.+++||++...+ ++.+
T Consensus 209 l~vDaN~---------~w~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~ 271 (404)
T PRK15072 209 LLHDVHH---------RLTPIEAARLGKSLEPYRLFWLE--DPT------PAENQEAFRLIRQHTTTPLAVGEVFNSIWD 271 (404)
T ss_pred EEEECCC---------CCCHHHHHHHHHhccccCCcEEE--CCC------CccCHHHHHHHHhcCCCCEEeCcCccCHHH
Confidence 6666554 34578899999999999999988 442 1224466778999999999988877 8999
Q ss_pred HHHHHHcCCCcEEcc
Q 017733 307 GNKAVAANYTDLVAF 321 (367)
Q Consensus 307 a~~~L~~G~~D~V~~ 321 (367)
++++++.+.+|+|.+
T Consensus 272 ~~~li~~~a~dii~~ 286 (404)
T PRK15072 272 CKQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHHcCCCCEEec
Confidence 999999999998864
No 91
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.32 E-value=1.5e-05 Score=79.02 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc---c-----CCchhh
Q 017733 210 RFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ---L-----TDKSET 281 (367)
Q Consensus 210 r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~---~-----~~~~~~ 281 (367)
.-+.++|+.+|+..+..+|++|+... . ..+ .+++.++..|+|+|+++...-.. + ....+.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~--------~-~~~---~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt 266 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAG--------H-GEG---DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPT 266 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCC--------C-CHH---HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccH
Confidence 45789999999999756899999873 1 223 35566667779999997642111 0 011122
Q ss_pred HHHHHHHHHhc-------CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 282 QRSLLSMRRAF-------EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 282 ~~~~~~ir~~~-------~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
...+..+++.+ ++||++.||+ |..++.++|.-| +|+|.+||+++.
T Consensus 267 ~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLG-Ad~V~ig~~~l~ 319 (392)
T cd02808 267 ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALG-ADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcC-CCeeeechHHHH
Confidence 23344444433 5899999999 899999999999 999999999995
No 92
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.31 E-value=2.7e-05 Score=69.99 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=70.2
Q ss_pred HHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCC--ccccCCchhhHHHHHHHHHhcC
Q 017733 216 VEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR--MIQLTDKSETQRSLLSMRRAFE 293 (367)
Q Consensus 216 i~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~--~~~~~~~~~~~~~~~~ir~~~~ 293 (367)
++.+|+..+...|++... +.++ +.++.+.|+||+.++.-. ...+...+.....++.+++.++
T Consensus 86 ~~~~r~~~~~~~ig~s~~------------s~e~----a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ 149 (201)
T PRK07695 86 VRSVREKFPYLHVGYSVH------------SLEE----AIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALS 149 (201)
T ss_pred HHHHHHhCCCCEEEEeCC------------CHHH----HHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCC
Confidence 455677664336676332 1332 345677899999653211 1111111223466788888889
Q ss_pred CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 294 GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 294 ~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
+||++.||++++++.++++.| +|+|++++++...++....++
T Consensus 150 ipvia~GGI~~~~~~~~~~~G-a~gvav~s~i~~~~~p~~~~~ 191 (201)
T PRK07695 150 IPVIAIGGITPENTRDVLAAG-VSGIAVMSGIFSSANPYSKAK 191 (201)
T ss_pred CCEEEEcCCCHHHHHHHHHcC-CCEEEEEHHHhcCCCHHHHHH
Confidence 999999999999999999998 999999999997666544443
No 93
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=98.31 E-value=1.3e-05 Score=78.67 Aligned_cols=114 Identities=13% Similarity=0.236 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++.+.|+.+.+.||..++|.. .+.|+++|+++|++ .|.+.-|.
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv--------------------------------~~~v~avre~~G~~~~l~vDaN~--- 172 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL--------------------------------PKLFEAVREKFGFEFHLLHDVHH--- 172 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH--------------------------------HHHHHHHHhccCCCceEEEECCC---
Confidence 3456667777788999999742 67899999999976 56665553
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++..+++.|++.++.|++ +|- .+........+++.+++||++...+ ++.++.++++.+.+
T Consensus 173 ------~w~~~~A~~~~~~l~~~~l~~iE--eP~------~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~ 238 (361)
T cd03322 173 ------RLTPNQAARFGKDVEPYRLFWME--DPT------PAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLI 238 (361)
T ss_pred ------CCCHHHHHHHHHHhhhcCCCEEE--CCC------CcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCC
Confidence 23578899999999999999988 441 1234566778999999998887776 89999999999989
Q ss_pred cEEcc
Q 017733 317 DLVAF 321 (367)
Q Consensus 317 D~V~~ 321 (367)
|++.+
T Consensus 239 di~~~ 243 (361)
T cd03322 239 DYIRT 243 (361)
T ss_pred CEEec
Confidence 98754
No 94
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.30 E-value=2.7e-05 Score=72.28 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHH-----HHHHHHHHHhCCcc--eEEE
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFAL-----EVVEAVVREIGAER--VGMR 231 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~-----eii~aiR~~vg~~~--i~vr 231 (367)
+.+.+.++.+.++ +|+|||+..| .|-..| |..+++...-++ ++++++|+.+. .| ++++
T Consensus 18 ~~~~~~~~~l~~~-ad~iElgip~-----------sdp~ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~-~Pl~lM~y 82 (244)
T PRK13125 18 ESFKEFIIGLVEL-VDILELGIPP-----------KYPKYD--GPVIRKSHRKVKGLDIWPLLEEVRKDVS-VPIILMTY 82 (244)
T ss_pred HHHHHHHHHHHhh-CCEEEECCCC-----------CCCCCC--CHHHHHHHHHHHHcCcHHHHHHHhccCC-CCEEEEEe
Confidence 5778888877777 9999999855 566666 556777666666 89999998763 24 3567
Q ss_pred eCCCcc--------ccccC------CC---ChHHHHHHHHHHhhhcCccEEEEecCCccc-------------------c
Q 017733 232 LSPYAE--------CAEAV------DS---NPEALGLYMAKALNKFKLLYLHVIEPRMIQ-------------------L 275 (367)
Q Consensus 232 ls~~~~--------~~~~~------~~---~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~-------------------~ 275 (367)
+|+... +...+ .. +..++..++.+.+.+.|++.+-...+.... +
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~ 162 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRP 162 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCC
Confidence 776310 00000 11 112445556666666776665443321100 0
Q ss_pred -CCc---hhhHHHHHHHHHhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 276 -TDK---SETQRSLLSMRRAF-EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 276 -~~~---~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
.+. ......++.+|+.. +.|+++.||+ +++++.++++.| +|.|.+|++++.
T Consensus 163 ~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g-aD~vvvGSai~~ 219 (244)
T PRK13125 163 ATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG-ADGVVVGTAFIE 219 (244)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 000 11123566788877 4789999999 999999999999 999999999975
No 95
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.29 E-value=4.4e-05 Score=71.05 Aligned_cols=140 Identities=11% Similarity=-0.024 Sum_probs=95.8
Q ss_pred CCCCCChHHHHHHHH------------HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHH
Q 017733 145 PPRPLSIEEIPKIVN------------DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFA 212 (367)
Q Consensus 145 ~~~~mt~~eI~~ii~------------~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~ 212 (367)
..|.=+.++|.+|.+ .|..-|..+.++|.|-|+ + . . |.|-+
T Consensus 48 v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID--a-T------------~------------r~rP~ 100 (283)
T cd04727 48 VARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID--E-S------------E------------VLTPA 100 (283)
T ss_pred eeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe--c-c------------C------------CCCcH
Confidence 455556677776654 567888888999999995 2 1 1 22235
Q ss_pred HHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc-----------------
Q 017733 213 LEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL----------------- 275 (367)
Q Consensus 213 ~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~----------------- 275 (367)
-+++..+|+.. .-+++-..+ +.++++. -.+.|+|+|..+...++.-
T Consensus 101 ~~~~~~iK~~~-~~l~MAD~s------------tleEal~----a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~ 163 (283)
T cd04727 101 DEEHHIDKHKF-KVPFVCGAR------------NLGEALR----RISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRK 163 (283)
T ss_pred HHHHHHHHHHc-CCcEEccCC------------CHHHHHH----HHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 78899999887 224432222 3454432 3467999987764222211
Q ss_pred ---C----------CchhhHHHHHHHHHhcCCcEE--EeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 276 ---T----------DKSETQRSLLSMRRAFEGTFI--AAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 276 ---~----------~~~~~~~~~~~ir~~~~~pvi--~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
+ ...+..+.++.+++.+++||+ +.||+ |++++.++++.| +|.|+++++++..+
T Consensus 164 ~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaVGSAI~~a~ 232 (283)
T cd04727 164 LQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSE 232 (283)
T ss_pred HhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHhhcCC
Confidence 0 112345678889998899987 99999 999999999998 99999999999633
No 96
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.29 E-value=3.7e-05 Score=74.47 Aligned_cols=129 Identities=20% Similarity=0.175 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+-+..+.+||.|.|-|..+||+ .+...+.++.+|+..+.-+|..- |.
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~------------------------s~~~~~~ik~ik~~~~~~~viaG-NV------- 157 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH------------------------SEHVIDMIKKIKKKFPDVPVIAG-NV------- 157 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT------------------------SHHHHHHHHHHHHHSTTSEEEEE-EE-------
T ss_pred HHHHHHHHHcCCCEEEccccCcc------------------------HHHHHHHHHHHHHhCCCceEEec-cc-------
Confidence 45555667799999999999974 34567889999999984444420 11
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCC---ccc---cCCchhhHHHH---HHHHHhcCCcEEEeCCC-CHHHHHHHH
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQ---LTDKSETQRSL---LSMRRAFEGTFIAAGGY-SRDEGNKAV 311 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~---~~~~~~~~~~~---~~ir~~~~~pvi~~Ggi-t~~~a~~~L 311 (367)
-+ .+-++.|.++|+|.|-|--+. +.. ..-..++...+ ...++...+|||+-||+ +.-+.-++|
T Consensus 158 ---~T----~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAl 230 (352)
T PF00478_consen 158 ---VT----YEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKAL 230 (352)
T ss_dssp ----S----HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHH
T ss_pred ---CC----HHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeee
Confidence 12 235566788999999885432 111 11122333333 34555568999999999 799999999
Q ss_pred HcCCCcEEcccHHHHhCCc
Q 017733 312 AANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 312 ~~G~~D~V~~gR~~ladP~ 330 (367)
..| +|+||||+.|..--+
T Consensus 231 a~G-Ad~VMlG~llAgt~E 248 (352)
T PF00478_consen 231 AAG-ADAVMLGSLLAGTDE 248 (352)
T ss_dssp HTT--SEEEESTTTTTBTT
T ss_pred eec-ccceeechhhccCcC
Confidence 999 999999998876544
No 97
>PRK14017 galactonate dehydratase; Provisional
Probab=98.29 E-value=2.3e-05 Score=77.48 Aligned_cols=130 Identities=21% Similarity=0.315 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++++.|+.+++.||..++|..+.. ...+++ ........+.|+++|+++|++ .|.+.-|.
T Consensus 126 ~~~~~~a~~~~~~Gf~~~KiKv~~~--------------~~~~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~--- 186 (382)
T PRK14017 126 ADVAEAARARVERGFTAVKMNGTEE--------------LQYIDS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG--- 186 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcCC--------------cccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC---
Confidence 3456667777789999999985310 011111 011344589999999999976 46665553
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++.++++.|++.++.|++ +|- .+.+....+.+++.+++||.+...+ +++++.++++.+.+
T Consensus 187 ------~w~~~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~ 252 (382)
T PRK14017 187 ------RVHKPMAKVLAKELEPYRPMFIE--EPV------LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV 252 (382)
T ss_pred ------CCCHHHHHHHHHhhcccCCCeEE--CCC------CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC
Confidence 33577899999999999999988 441 1224566788999999999988887 89999999999989
Q ss_pred cEEcc
Q 017733 317 DLVAF 321 (367)
Q Consensus 317 D~V~~ 321 (367)
|+|.+
T Consensus 253 d~v~~ 257 (382)
T PRK14017 253 DIIQP 257 (382)
T ss_pred CeEec
Confidence 98854
No 98
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.28 E-value=0.00014 Score=69.24 Aligned_cols=197 Identities=15% Similarity=0.074 Sum_probs=116.1
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCcc--CCCCCCCCCCCCcc---cCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRV--SNYGLQPNGEAPIS---STSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~--~~~~~~~~~~~~~~---ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
.+.++-+++++.+.++++++|+...... +..+....-...++ ...+|.. ...-|. +
T Consensus 28 ~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~-------lHLDH~-~----------- 88 (293)
T PRK07315 28 LEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVA-------IHLDHG-H----------- 88 (293)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEE-------EECCCC-C-----------
Confidence 4678889999999999999999653211 10000000000000 0011110 000111 2
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeC---CCccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLS---PYAEC 238 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls---~~~~~ 238 (367)
.+.++.|.++||+-|.+-+.+ -+++...+.+.++++-.++.- -+|-..+. ..++.
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~--------------------l~~eEni~~t~~v~~~a~~~g--v~vE~ElG~i~g~ed~ 146 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSH--------------------LPVEENLKLAKEVVEKAHAKG--ISVEAEVGTIGGEEDG 146 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHcC--CEEEEecCcccCcCcc
Confidence 123446677899999987654 245666777777777666531 12222222 11111
Q ss_pred -cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC---CchhhHHHHHHHHHhc-CCcEEEeCC--CCHHHHHHHH
Q 017733 239 -AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT---DKSETQRSLLSMRRAF-EGTFIAAGG--YSRDEGNKAV 311 (367)
Q Consensus 239 -~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~---~~~~~~~~~~~ir~~~-~~pvi~~Gg--it~~~a~~~L 311 (367)
.+.....+++++.++. +.|+|||-++-++.+..+ .+....+.++.|++.+ ++|+++-|| ++.+++.+++
T Consensus 147 ~~g~s~~t~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i 222 (293)
T PRK07315 147 IIGKGELAPIEDAKAMV----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAI 222 (293)
T ss_pred ccCccCCCCHHHHHHHH----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHH
Confidence 1111123556665554 579999998766653332 1234567889999999 499888887 8999999999
Q ss_pred HcCCCcEEcccHHHHhCC
Q 017733 312 AANYTDLVAFGRLFLANP 329 (367)
Q Consensus 312 ~~G~~D~V~~gR~~ladP 329 (367)
+.| ++-|.+.+.+..+|
T Consensus 223 ~~G-i~KiNv~T~i~~~~ 239 (293)
T PRK07315 223 KLG-VAKVNVNTECQIAF 239 (293)
T ss_pred HcC-CCEEEEccHHHHHH
Confidence 999 99999999998743
No 99
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.25 E-value=7.7e-05 Score=68.17 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHh-CCCEEE--EecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCC
Q 017733 159 NDFRLAARNAIEA-GFDGVE--IHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~a-GfdgVe--i~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~ 235 (367)
++=++.|+++.|+ |-|-|+ |+..-.||+. -..+.|++.++.+.+....+=+..
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp-----------------------d~~~tv~aa~~L~~~Gf~vlpyc~- 131 (248)
T cd04728 76 EEAVRTARLAREALGTDWIKLEVIGDDKTLLP-----------------------DPIETLKAAEILVKEGFTVLPYCT- 131 (248)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCcccccc-----------------------CHHHHHHHHHHHHHCCCEEEEEeC-
Confidence 4557788888886 566664 4443322221 247889999999876543331111
Q ss_pred ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcC
Q 017733 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
++ ..++++|++.|++++-......+ ......+.++++.+++..++|||+.||| |++++.++++.|
T Consensus 132 --------dd-----~~~ar~l~~~G~~~vmPlg~pIG-sg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG 197 (248)
T cd04728 132 --------DD-----PVLAKRLEDAGCAAVMPLGSPIG-SGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG 197 (248)
T ss_pred --------CC-----HHHHHHHHHcCCCEeCCCCcCCC-CCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 11 24788899999999832111122 1122334678889999888999999999 899999999999
Q ss_pred CCcEEcccHHHHh--CCch
Q 017733 315 YTDLVAFGRLFLA--NPDL 331 (367)
Q Consensus 315 ~~D~V~~gR~~la--dP~l 331 (367)
+|.|.++.+... ||..
T Consensus 198 -AdgVlV~SAIt~a~dP~~ 215 (248)
T cd04728 198 -ADAVLLNTAIAKAKDPVA 215 (248)
T ss_pred -CCEEEEChHhcCCCCHHH
Confidence 999999999986 4654
No 100
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.25 E-value=2.6e-05 Score=76.28 Aligned_cols=128 Identities=21% Similarity=0.315 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECA 239 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~ 239 (367)
..+.++.+.+.||..++|..+.+. ...| + ..-.+.-.+.|+++|+++|++ .|.|.-|.
T Consensus 127 ~~~~~~~~~~~Gf~~~KiKvg~~~-----------~~~~---~--~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----- 185 (352)
T cd03325 127 VAEAARARREAGFTAVKMNATEEL-----------QWID---T--SKKVDAAVERVAALREAVGPDIDIGVDFHG----- 185 (352)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCc-----------ccCC---C--HHHHHHHHHHHHHHHHhhCCCCEEEEECCC-----
Confidence 445566667899999999875310 0111 0 011345689999999999976 46665553
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
..+.+++.++++.|++.+++|++ ++. .+.+....+.+++.+++||.+...+ +++++.++++.+.+|+
T Consensus 186 ----~~~~~~A~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~ 253 (352)
T cd03325 186 ----RVSKPMAKDLAKELEPYRLLFIE--EPV------LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDI 253 (352)
T ss_pred ----CCCHHHHHHHHHhccccCCcEEE--CCC------CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCE
Confidence 34578899999999999999998 442 1224456778999999998887776 8999999999888998
Q ss_pred Ecc
Q 017733 319 VAF 321 (367)
Q Consensus 319 V~~ 321 (367)
|.+
T Consensus 254 v~~ 256 (352)
T cd03325 254 IQP 256 (352)
T ss_pred Eec
Confidence 844
No 101
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.24 E-value=2.6e-05 Score=78.69 Aligned_cols=136 Identities=19% Similarity=0.167 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
..+-++.+.++|+|.|+|.++||+ ...+.+.|+.||+..++-+|.+.-
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~------------------------~~~~~~~i~~i~~~~~~~~vi~G~-------- 272 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGH------------------------SIYVIDSIKEIKKTYPDLDIIAGN-------- 272 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCc------------------------HhHHHHHHHHHHHhCCCCCEEEEe--------
Confidence 345566778899999999999851 135789999999987644555411
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCC---cccc---CCchhhHHHHHHHHH---hcCCcEEEeCCC-CHHHHHHH
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQL---TDKSETQRSLLSMRR---AFEGTFIAAGGY-SRDEGNKA 310 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~~---~~~~~~~~~~~~ir~---~~~~pvi~~Ggi-t~~~a~~~ 310 (367)
-.+.+ -++.+.++|+|+|.+..+. +... ....+....+..+.+ ..++|||+.||+ ++.++.++
T Consensus 273 ---v~t~~----~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kA 345 (450)
T TIGR01302 273 ---VATAE----QAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKA 345 (450)
T ss_pred ---CCCHH----HHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH
Confidence 12334 3445667899999875321 1111 112233344444433 357899999999 89999999
Q ss_pred HHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 311 VAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
|+.| +|.|++|+.|..-.+-|-++.
T Consensus 346 la~G-A~~V~~G~~~a~~~e~pg~~~ 370 (450)
T TIGR01302 346 LAAG-ADAVMLGSLLAGTTESPGEYE 370 (450)
T ss_pred HHcC-CCEEEECchhhcCCcCCCceE
Confidence 9999 999999999988777666643
No 102
>PLN02535 glycolate oxidase
Probab=98.21 E-value=2.3e-05 Score=76.40 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHH
Q 017733 210 RFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMR 289 (367)
Q Consensus 210 r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir 289 (367)
.+.-+-|+.+|+..+ .||.||=-. +.++ ++.+.+.|+|+|.+++....+....++....+..++
T Consensus 209 ~~tW~~i~~lr~~~~-~PvivKgV~-----------~~~d----A~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~ 272 (364)
T PLN02535 209 SLSWKDIEWLRSITN-LPILIKGVL-----------TRED----AIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVV 272 (364)
T ss_pred CCCHHHHHHHHhccC-CCEEEecCC-----------CHHH----HHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHH
Confidence 345678899999763 478887321 1232 456678999999987543222222233456677777
Q ss_pred Hhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 290 RAF--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 290 ~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
+.+ ++|||+.||+ +..++.++|.-| +|+|++||+++..+.
T Consensus 273 ~av~~~ipVi~dGGIr~g~Dv~KALalG-A~aV~vGr~~l~~l~ 315 (364)
T PLN02535 273 QAVGGRVPVLLDGGVRRGTDVFKALALG-AQAVLVGRPVIYGLA 315 (364)
T ss_pred HHHhcCCCEEeeCCCCCHHHHHHHHHcC-CCEEEECHHHHhhhh
Confidence 766 5899999999 899999999999 999999999998765
No 103
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.21 E-value=3e-05 Score=76.45 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
+..+-+..+.++|.|.|-|.++||+ .+.+.++|+.+|+.++.-.|.+.--.
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~------------------------~~~~~~~v~~ik~~~p~~~vi~g~V~----- 203 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGH------------------------STRIIELVKKIKTKYPNLDLIAGNIV----- 203 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC------------------------ChhHHHHHHHHHhhCCCCcEEEEecC-----
Confidence 3446667778899999999998852 13468999999999864344331111
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCC---cccc---CCchhhHHHH---HHHHHhcCCcEEEeCCC-CHHHHHH
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQL---TDKSETQRSL---LSMRRAFEGTFIAAGGY-SRDEGNK 309 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~~---~~~~~~~~~~---~~ir~~~~~pvi~~Ggi-t~~~a~~ 309 (367)
+.+ -++.+.++|+|+|-+.-+. +... ....+....+ ..+.+.+++|||+-||| ++.++.+
T Consensus 204 ------T~e----~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~K 273 (404)
T PRK06843 204 ------TKE----AALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVK 273 (404)
T ss_pred ------CHH----HHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH
Confidence 233 4556677899998764221 1111 1112333333 33444567899999999 8999999
Q ss_pred HHHcCCCcEEcccHHHHhCCchHHH
Q 017733 310 AVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 310 ~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
+|+.| +|+|++|+.+..-.+=|-+
T Consensus 274 ALalG-A~aVmvGs~~agt~Espg~ 297 (404)
T PRK06843 274 AIAAG-ADSVMIGNLFAGTKESPSE 297 (404)
T ss_pred HHHcC-CCEEEEcceeeeeecCCCc
Confidence 99999 9999999999886554433
No 104
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=98.20 E-value=3e-05 Score=74.89 Aligned_cols=121 Identities=6% Similarity=0.104 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~ 238 (367)
+..+.|+..++.||..++|..|.. + ..--.+.|++||+++|++ .|.+..|.
T Consensus 121 ~~~~~a~~~~~~G~~~~KvKvG~~--------------------~----~~~d~~~v~air~~~g~~~~l~vDaN~---- 172 (320)
T PRK02714 121 AALQQWQTLWQQGYRTFKWKIGVD--------------------P----LEQELKIFEQLLERLPAGAKLRLDANG---- 172 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCC--------------------C----hHHHHHHHHHHHHhcCCCCEEEEECCC----
Confidence 456677777788999999976430 1 122378899999999876 45555543
Q ss_pred cccCCCChHHHHHHHHHHhhh---cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcC
Q 017733 239 AEAVDSNPEALGLYMAKALNK---FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~---~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
..+.+++.++++.|++ .++.||+ +|- .......++.+++.+++||.+...+ ++.++..+++.+
T Consensus 173 -----~w~~~~A~~~~~~l~~l~~~~i~~iE--qP~------~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~ 239 (320)
T PRK02714 173 -----GLSLEEAKRWLQLCDRRLSGKIEFIE--QPL------PPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQG 239 (320)
T ss_pred -----CCCHHHHHHHHHHHhhccCCCccEEE--CCC------CcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC
Confidence 3457889999999987 6888887 431 1224456778999999999998887 899999999999
Q ss_pred CCcEEcc
Q 017733 315 YTDLVAF 321 (367)
Q Consensus 315 ~~D~V~~ 321 (367)
.+|+|.+
T Consensus 240 a~d~v~i 246 (320)
T PRK02714 240 WRGIFVI 246 (320)
T ss_pred CCCEEEE
Confidence 8997743
No 105
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.20 E-value=4.9e-05 Score=72.92 Aligned_cols=120 Identities=18% Similarity=0.083 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
+..+.+.++|.+.|.++.+. | .++++.+|+. | -.|...++
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~---------p--------------------~~~i~~lk~~-g-~~v~~~v~--------- 117 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGN---------P--------------------GKYIPRLKEN-G-VKVIPVVA--------- 117 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCC---------c--------------------HHHHHHHHHc-C-CEEEEEcC---------
Confidence 34455677899999875432 1 2577888776 3 13333222
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
+. +.++.++++|+|.|.++................+..+++.+++|||+.||+ +++++..++..| +|.|++
T Consensus 118 ---s~----~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G-A~gV~i 189 (307)
T TIGR03151 118 ---SV----ALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG-AEAVQM 189 (307)
T ss_pred ---CH----HHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CCEeec
Confidence 12 356778889999998876533222222234567888999999999999999 899999999988 999999
Q ss_pred cHHHHhCCc
Q 017733 322 GRLFLANPD 330 (367)
Q Consensus 322 gR~~ladP~ 330 (367)
|+.++.-++
T Consensus 190 Gt~f~~t~E 198 (307)
T TIGR03151 190 GTRFLCAKE 198 (307)
T ss_pred chHHhcccc
Confidence 999997654
No 106
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.20 E-value=2.3e-05 Score=79.82 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
..+-++.+.++|.|.|+|..+|| +..+..+.|++||+..+.-+|+. .
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G------------------------~s~~~~~~i~~ik~~~~~~~v~a---G------ 288 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQG------------------------NSIYQIDMIKKLKSNYPHVDIIA---G------ 288 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCC------------------------CchHHHHHHHHHHhhCCCceEEE---C------
Confidence 35667778899999999999885 12456889999999876334444 1
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecC--C-cccc---CCchhhHHHHH---HHHHhcCCcEEEeCCC-CHHHHHHH
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEP--R-MIQL---TDKSETQRSLL---SMRRAFEGTFIAAGGY-SRDEGNKA 310 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~--~-~~~~---~~~~~~~~~~~---~ir~~~~~pvi~~Ggi-t~~~a~~~ 310 (367)
+-.+.+ -++.+.++|+|+|-+..+ . +... ....+....+. .+.+..++|||+.||+ ++.++.++
T Consensus 289 --~V~t~~----~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kA 362 (495)
T PTZ00314 289 --NVVTAD----QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKA 362 (495)
T ss_pred --CcCCHH----HHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 112333 344566799999976422 1 1111 11122333333 3444457899999999 89999999
Q ss_pred HHcCCCcEEcccHHHHhCCchHHH
Q 017733 311 VAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
|+.| +|+|++|+.+..--+-+.+
T Consensus 363 la~G-A~~Vm~G~~~a~~~e~~~~ 385 (495)
T PTZ00314 363 LALG-ADCVMLGSLLAGTEEAPGE 385 (495)
T ss_pred HHcC-CCEEEECchhccccccCCc
Confidence 9999 9999999997765554443
No 107
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.19 E-value=5.7e-05 Score=68.04 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=41.9
Q ss_pred HHHHHHHhcC-----CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 284 SLLSMRRAFE-----GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 284 ~~~~ir~~~~-----~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
.++.+++.++ .|+++.||++++.+.++++.| +|.|.+|++++..+|....++
T Consensus 151 ~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~g-ad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 151 KIREVRKMIDENGLSILIEVDGGVNDDNARELAEAG-ADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred HHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence 3444555443 588899999999999999998 999999999999888666654
No 108
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.18 E-value=0.00014 Score=66.38 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=72.1
Q ss_pred HHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc--cCCchhhHHHHHHHHHhc
Q 017733 216 VEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ--LTDKSETQRSLLSMRRAF 292 (367)
Q Consensus 216 i~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~--~~~~~~~~~~~~~ir~~~ 292 (367)
+..+|+..+++ .|++ |.. .+.+++. ...+.|+||+.+..- +.. +...+.....++.+++.+
T Consensus 100 ~~~~r~~~~~~~iiG~--s~~---------~s~~~a~----~A~~~gaDYv~~Gpv-~t~tK~~~~p~gl~~l~~~~~~~ 163 (221)
T PRK06512 100 LAEAIEKHAPKMIVGF--GNL---------RDRHGAM----EIGELRPDYLFFGKL-GADNKPEAHPRNLSLAEWWAEMI 163 (221)
T ss_pred HHHHHHhcCCCCEEEe--cCC---------CCHHHHH----HhhhcCCCEEEECCC-CCCCCCCCCCCChHHHHHHHHhC
Confidence 46778888766 5665 321 1123222 244689999987432 211 112223455677788889
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 293 EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 293 ~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
++||++-||++++++.++++.| +|+|++-++++..+|....++
T Consensus 164 ~iPvvAIGGI~~~n~~~~~~~G-A~giAvisai~~~~dp~~a~~ 206 (221)
T PRK06512 164 EIPCIVQAGSDLASAVEVAETG-AEFVALERAVFDAHDPPLAVA 206 (221)
T ss_pred CCCEEEEeCCCHHHHHHHHHhC-CCEEEEhHHhhCCCCHHHHHH
Confidence 9999999999999999999999 999999999998887654443
No 109
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.18 E-value=0.00012 Score=65.87 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEccc
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 322 (367)
.+.+++...+...+..|++++++...+-. ..+...+.++.+|+.++.|++.+||+ ++++++++++.| +|.|.+|
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVVG 205 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEeC
Confidence 46777778888888889999988543211 22334678999999999999999999 899999999999 9999875
No 110
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.17 E-value=4.9e-05 Score=69.32 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=92.8
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEe---CCCccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRL---SPYAEC 238 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrl---s~~~~~ 238 (367)
...++.|.+.|.|.|++-.-.+. +.+ .+.+.+.+-|.++++.+++ +.+|+ ++
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~----~~~---------------g~~~~v~~ei~~v~~~~~~--~~lKvIlEt~---- 131 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGA----LKS---------------GDWDAVEADIRAVVEAAGG--AVLKVIIETC---- 131 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHH----hcC---------------CCHHHHHHHHHHHHHhcCC--ceEEEEeecC----
Confidence 55677888899999997653321 221 1256678888888887743 45666 33
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC--CcEEEeCCC-CHHHHHHHHHcCC
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE--GTFIAAGGY-SRDEGNKAVAANY 315 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~ 315 (367)
..+.++...+++...++|+|||-.+-+.. ......+..+.+++.+. ++|.++||+ |.++|.++|+.|
T Consensus 132 -----~L~~e~i~~a~~~~~~agadfIKTsTG~~----~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aG- 201 (221)
T PRK00507 132 -----LLTDEEKVKACEIAKEAGADFVKTSTGFS----TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAG- 201 (221)
T ss_pred -----cCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcC-
Confidence 23456667888888999999998764421 12234566777777764 679999999 899999999999
Q ss_pred CcEEcccHHH
Q 017733 316 TDLVAFGRLF 325 (367)
Q Consensus 316 ~D~V~~gR~~ 325 (367)
+|.++..++.
T Consensus 202 A~riGtS~~~ 211 (221)
T PRK00507 202 ATRLGTSAGV 211 (221)
T ss_pred cceEccCcHH
Confidence 9999998774
No 111
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=98.15 E-value=3.6e-05 Score=75.76 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=83.5
Q ss_pred HHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChH
Q 017733 169 IEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 169 ~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~ 247 (367)
++.||..+++..+.. + .+--.+.|+++|+++|++ .|.+.-|. ..+.
T Consensus 154 ~~~Gf~~~KiKvg~~--------------------~----~~~d~~~v~~~re~~g~~~~l~~DaN~---------~~~~ 200 (368)
T TIGR02534 154 EEKRHRSFKLKIGAR--------------------D----PADDVAHVVAIAKALGDRASVRVDVNA---------AWDE 200 (368)
T ss_pred HhcCcceEEEEeCCC--------------------C----cHHHHHHHHHHHHhcCCCcEEEEECCC---------CCCH
Confidence 357999999986420 1 223478999999999986 45554443 3457
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
+++.++++.|++.++.|++ ++. .+......+.+++.+++||++...+ ++.++..+++.+.+|+|.+
T Consensus 201 ~~A~~~~~~l~~~~~~~iE--eP~------~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 201 RTALHYLPQLADAGVELIE--QPT------PAENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred HHHHHHHHHHHhcChhheE--CCC------CcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 8899999999999999887 442 1223455667899999999988777 8999999999988998765
No 112
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=98.15 E-value=4.5e-05 Score=75.63 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=84.2
Q ss_pred HHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChH
Q 017733 169 IEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 169 ~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~ 247 (367)
++.||.+++|..++| |.. |. .-.+.-.+.|++||+++|++ .|.|..|. ..+.
T Consensus 169 ~~~Gf~~~Kik~~~g--------~~~-------g~---~~~~~di~~v~avReavG~d~~l~vDaN~---------~~~~ 221 (394)
T PRK15440 169 KEMGFIGGKMPLHHG--------PAD-------GD---AGLRKNAAMVADMREKVGDDFWLMLDCWM---------SLDV 221 (394)
T ss_pred HhCCCCEEEEcCCcC--------ccc-------ch---HHHHHHHHHHHHHHHhhCCCCeEEEECCC---------CCCH
Confidence 468999999986443 100 00 11345689999999999987 57776654 3457
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc--EEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT--FIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p--vi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
+++.++++.|++.++.|++ ++- .+.+....+.|++.++.| +.+.... ++.++.++|+.+.+|+|.
T Consensus 222 ~~Ai~~~~~le~~~l~wiE--EPl------~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq 289 (394)
T PRK15440 222 NYATKLAHACAPYGLKWIE--ECL------PPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQ 289 (394)
T ss_pred HHHHHHHHHhhhcCCccee--CCC------CcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEe
Confidence 8899999999999999988 441 223456677899987754 4433344 899999999999999874
No 113
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.15 E-value=6.8e-05 Score=65.90 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+.+....++|.|.|-|.+.. + .|+.-+.+++++||+.. -.++-.++
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~-------------R----------~Rp~~l~~li~~i~~~~--~l~MADis-------- 100 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATD-------------R----------PRPETLEELIREIKEKY--QLVMADIS-------- 100 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SS-------------S----------S-SS-HHHHHHHHHHCT--SEEEEE-S--------
T ss_pred HHHHHHHHHcCCCEEEEecCC-------------C----------CCCcCHHHHHHHHHHhC--cEEeeecC--------
Confidence 445556678999999998743 1 13456789999999976 34454444
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccC-CchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT-DKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~-~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 319 (367)
+.|++. ...++|+|+|..+...|.... ...++..+++.+.+. +.|||+-|++ ||+++.++|+.| ++.|
T Consensus 101 ----t~ee~~----~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G-A~aV 170 (192)
T PF04131_consen 101 ----TLEEAI----NAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELG-AHAV 170 (192)
T ss_dssp ----SHHHHH----HHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT--SEE
T ss_pred ----CHHHHH----HHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC-CeEE
Confidence 245443 456789999988766554321 244566778888876 8999999999 999999999999 9999
Q ss_pred cccHHHHhCCchHHH
Q 017733 320 AFGRLFLANPDLPKR 334 (367)
Q Consensus 320 ~~gR~~ladP~l~~k 334 (367)
.+|.+ +-.|.++.+
T Consensus 171 VVGsA-ITrP~~It~ 184 (192)
T PF04131_consen 171 VVGSA-ITRPQEITK 184 (192)
T ss_dssp EE-HH-HH-HHHHHH
T ss_pred EECcc-cCCHHHHHH
Confidence 99976 456766544
No 114
>PRK06801 hypothetical protein; Provisional
Probab=98.13 E-value=0.00053 Score=64.94 Aligned_cols=191 Identities=15% Similarity=0.089 Sum_probs=118.1
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+.++-+++++.+.++++++|+...... + .+...+++ +.+|.. +...+. .+
T Consensus 28 ~e~~~avi~AAe~~~~PvIl~~~~~~~~----~--~~~~~~~~~~~~~a~~~~vpV~-----lHlDH~--~~-------- 86 (286)
T PRK06801 28 SHFLRALFAAAKQERSPFIINIAEVHFK----Y--ISLESLVEAVKFEAARHDIPVV-----LNLDHG--LH-------- 86 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCcchhh----c--CCHHHHHHHHHHHHHHCCCCEE-----EECCCC--CC--------
Confidence 4678889999999999999999654321 0 01000111 011110 001111 11
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEE---eCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMR---LSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vr---ls~~ 235 (367)
.+.+++|.++||+.|.+-+.+ -+++...+.+.++++..+.. |- .|-.- +...
T Consensus 87 ---~e~i~~Ai~~GftSVm~D~S~--------------------l~~eeNi~~t~~v~~~a~~~-gv-~VE~ElG~vgg~ 141 (286)
T PRK06801 87 ---FEAVVRALRLGFSSVMFDGST--------------------LEYEENVRQTREVVKMCHAV-GV-SVEAELGAVGGD 141 (286)
T ss_pred ---HHHHHHHHHhCCcEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEeecCcccCC
Confidence 344667788999999986543 24567788888888888775 21 12111 2222
Q ss_pred ccc---c--ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc--hhhHHHHHHHHHhcCCcEEEeCC--CCHHH
Q 017733 236 AEC---A--EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK--SETQRSLLSMRRAFEGTFIAAGG--YSRDE 306 (367)
Q Consensus 236 ~~~---~--~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~--~~~~~~~~~ir~~~~~pvi~~Gg--it~~~ 306 (367)
++. . +......++++.++++ +.|+|++-++-++.+..+.. ....+.++.+++.+++|++.-|| ++.++
T Consensus 142 e~~v~~~~~~~~~~T~pe~a~~f~~---~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~ 218 (286)
T PRK06801 142 EGGALYGEADSAKFTDPQLARDFVD---RTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDAD 218 (286)
T ss_pred CCCcccCCcccccCCCHHHHHHHHH---HHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHH
Confidence 111 0 0001223455555554 47999999976665444432 23556788999999999888777 89999
Q ss_pred HHHHHHcCCCcEEcccHHHHh
Q 017733 307 GNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 307 a~~~L~~G~~D~V~~gR~~la 327 (367)
+.++++.| ++-|-+++.+..
T Consensus 219 ~~~~i~~G-i~KINv~T~~~~ 238 (286)
T PRK06801 219 FRRAIELG-IHKINFYTGMSQ 238 (286)
T ss_pred HHHHHHcC-CcEEEehhHHHH
Confidence 99999999 899999988765
No 115
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.13 E-value=4.2e-05 Score=75.15 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=86.4
Q ss_pred HHHHHHHHHhC-CCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcccc
Q 017733 162 RLAARNAIEAG-FDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECA 239 (367)
Q Consensus 162 ~~aA~~a~~aG-fdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~ 239 (367)
.+.|+.+.+.| |..++|..+. . + .+--.+.|+++|+.+|++ .|.+..|.
T Consensus 147 ~~~~~~~~~~G~f~~~KiKvg~---------------~-----~----~~~d~~~v~avr~~~g~~~~l~iDaN~----- 197 (365)
T cd03318 147 IAEAEEMLEAGRHRRFKLKMGA---------------R-----P----PADDLAHVEAIAKALGDRASVRVDVNQ----- 197 (365)
T ss_pred HHHHHHHHhCCCceEEEEEeCC---------------C-----C----hHHHHHHHHHHHHHcCCCcEEEEECCC-----
Confidence 34455566789 9999998642 0 1 222368899999999975 45554443
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
..+.+++.++++.|++.++.||+ ++. .+......+.+++..++||++...+ +++++.++++.+.+|+
T Consensus 198 ----~~~~~~A~~~~~~l~~~~~~~iE--eP~------~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~ 265 (365)
T cd03318 198 ----AWDESTAIRALPRLEAAGVELIE--QPV------PRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADV 265 (365)
T ss_pred ----CCCHHHHHHHHHHHHhcCcceee--CCC------CcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCe
Confidence 33577899999999999999887 442 1223456777888888998887776 8999999999888888
Q ss_pred Ecc
Q 017733 319 VAF 321 (367)
Q Consensus 319 V~~ 321 (367)
+.+
T Consensus 266 ~~~ 268 (365)
T cd03318 266 FSL 268 (365)
T ss_pred EEE
Confidence 755
No 116
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.09 E-value=5e-05 Score=75.42 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=86.0
Q ss_pred HHHHHHHHHHH-hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 160 DFRLAARNAIE-AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~-aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
++++.|+.+.+ .||.+++|+.+.. + .+.-.+.|+++|+++++..|.|..|.
T Consensus 171 ~~~~~a~~~~~~~Gf~~~KiKvG~~--------------------~----~~~di~~v~avRea~~~~~l~vDaN~---- 222 (395)
T cd03323 171 GVVRLARAAIDRYGFKSFKLKGGVL--------------------P----GEEEIEAVKALAEAFPGARLRLDPNG---- 222 (395)
T ss_pred HHHHHHHHHHHhcCCcEEEEecCCC--------------------C----HHHHHHHHHHHHHhCCCCcEEEeCCC----
Confidence 34555666654 6999999986431 0 23447899999999952245554443
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTD 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 317 (367)
..+.+++.++++.|++ ++.|++ ++- . ....+..+++.+++||.+...+ +.+++.++++.+.+|
T Consensus 223 -----~w~~~~A~~~~~~l~~-~l~~iE--eP~-----~---d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avd 286 (395)
T cd03323 223 -----AWSLETAIRLAKELEG-VLAYLE--DPC-----G---GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVD 286 (395)
T ss_pred -----CcCHHHHHHHHHhcCc-CCCEEE--CCC-----C---CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCc
Confidence 3357889999999999 998887 431 1 4566777999999999887777 899999999999999
Q ss_pred EEc
Q 017733 318 LVA 320 (367)
Q Consensus 318 ~V~ 320 (367)
++.
T Consensus 287 il~ 289 (395)
T cd03323 287 IPL 289 (395)
T ss_pred EEe
Confidence 874
No 117
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.09 E-value=4.4e-05 Score=77.34 Aligned_cols=144 Identities=18% Similarity=0.099 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceE
Q 017733 150 SIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVG 229 (367)
Q Consensus 150 t~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~ 229 (367)
+.++...+-++..+-++.+.++|.|.|-|.++|| +.+.+.+.|++||+..++-+|.
T Consensus 215 ~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g------------------------~~~~~~~~i~~i~~~~~~~~vi 270 (475)
T TIGR01303 215 RIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHG------------------------HQVKMISAIKAVRALDLGVPIV 270 (475)
T ss_pred eehheeeeCccHHHHHHHHHHhCCCEEEEeCCCC------------------------CcHHHHHHHHHHHHHCCCCeEE
Confidence 3344444445666777777889999999999996 3467899999999988644555
Q ss_pred EEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCC---ccccC---CchhhH----HHHHHHHHhcCCcEEEe
Q 017733 230 MRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQLT---DKSETQ----RSLLSMRRAFEGTFIAA 299 (367)
Q Consensus 230 vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~~~---~~~~~~----~~~~~ir~~~~~pvi~~ 299 (367)
+-. ..+.+ -++.|.++|+|+|.|..+. +.... ...+.. +.++..++ .++|||+.
T Consensus 271 ~g~-----------~~t~~----~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viad 334 (475)
T TIGR01303 271 AGN-----------VVSAE----GVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWAD 334 (475)
T ss_pred Eec-----------cCCHH----HHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEe
Confidence 410 11233 4556678999999875432 11111 111222 22333333 37899999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHH
Q 017733 300 GGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 300 Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
||+ ++.++.++|..| +|.|++|+.|..--+-|-.
T Consensus 335 Ggi~~~~di~kala~G-A~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 335 GGVRHPRDVALALAAG-ASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred CCCCCHHHHHHHHHcC-CCEEeechhhcccccCCCc
Confidence 999 899999999999 9999999998765544433
No 118
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.09 E-value=0.00014 Score=67.87 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchh---hH-------hHHHHHHHHHHHHH-hCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLE---NR-------CRFALEVVEAVVRE-IGAER 227 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~e---nr-------~r~~~eii~aiR~~-vg~~~ 227 (367)
+.+.+.++.+.++|.|.|||-. |.++--.| |-.++ +| .+-++++++++|+. .. .+
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGi-----------PfsDP~aD--GpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~-~p 89 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGV-----------PFSDPLAD--GPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN-IP 89 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-----------CCCCCCCc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC
Confidence 4667778888899999999865 44444444 22222 12 24578899999976 32 23
Q ss_pred --eEEEeCCC-----cccc----cc------CCCChHHHHHHHHHHhhhcCccEEEEecCCccc----------------
Q 017733 228 --VGMRLSPY-----AECA----EA------VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ---------------- 274 (367)
Q Consensus 228 --i~vrls~~-----~~~~----~~------~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~---------------- 274 (367)
++.-.|+. +.|. .. ..+.+.++..++.+.+.+.|++.+-+..++...
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYL 169 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 33344441 1110 00 124566777777777888888876544332110
Q ss_pred ------cC----CchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 275 ------LT----DKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 275 ------~~----~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
.. ..+.....++.+|+..+.||++.+|+ |++++.++++.| +|.|.+|.+++.
T Consensus 170 vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVvGSaiv~ 232 (256)
T TIGR00262 170 VSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIVGSAIVK 232 (256)
T ss_pred EECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 00 01223457788999888999999999 699999999999 999999999874
No 119
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.08 E-value=0.00017 Score=64.94 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=43.7
Q ss_pred HHHHHHHhcC-----CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 284 SLLSMRRAFE-----GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 284 ~~~~ir~~~~-----~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
.++.+++.++ .|+++.||++++++.++++.| +|.|.+|++++..++....++
T Consensus 152 ~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~g-ad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 152 KIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAG-ADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhCCCCHHHHHH
Confidence 4556666653 799999999999999999999 999999999999988766655
No 120
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=98.08 E-value=5.8e-05 Score=75.92 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=85.3
Q ss_pred HHHHHHHHHHH-hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 160 DFRLAARNAIE-AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 160 ~f~~aA~~a~~-aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
++++.|+...+ .||..++|..+.. + ...-.+.|++||+++ ++ .|.|..|.
T Consensus 183 ~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~---------~~~Di~~v~avRea~-~d~~L~vDAN~--- 234 (441)
T TIGR03247 183 AVVRLAEAAYDRYGFRDFKLKGGVL---------------R---------GEEEIEAVTALAKRF-PQARITLDPNG--- 234 (441)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCC---------------C---------hHHHHHHHHHHHHhC-CCCeEEEECCC---
Confidence 34455555554 5999999986531 0 123478999999998 44 46665553
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhh----HHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSET----QRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVA 312 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~----~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~ 312 (367)
..+.++++++++.|++. +.|++ ++. . +.. ...++.|++.+++||.+...+ +++++.++++
T Consensus 235 ------~wt~~~Ai~~~~~Le~~-~~~iE--ePv-----~-~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~ 299 (441)
T TIGR03247 235 ------AWSLDEAIALCKDLKGV-LAYAE--DPC-----G-AEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQ 299 (441)
T ss_pred ------CCCHHHHHHHHHHhhhh-hceEe--CCC-----C-cccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHH
Confidence 33578899999999998 88776 442 1 112 456778999999999887776 8999999999
Q ss_pred cCCCcEEc
Q 017733 313 ANYTDLVA 320 (367)
Q Consensus 313 ~G~~D~V~ 320 (367)
.+.+|++.
T Consensus 300 ~~avdi~~ 307 (441)
T TIGR03247 300 LQAVDIPL 307 (441)
T ss_pred hCCCCEEe
Confidence 99999854
No 121
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.08 E-value=5.8e-05 Score=73.51 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHH
Q 017733 210 RFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMR 289 (367)
Q Consensus 210 r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir 289 (367)
.+.-+.|+.||+.++ .+|.+|= . .+.++ ++.+.+.|+|.|.++.....+....+.....+..++
T Consensus 222 ~~~w~~i~~ir~~~~-~pviiKg-V----------~~~ed----a~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~ 285 (361)
T cd04736 222 SFNWQDLRWLRDLWP-HKLLVKG-I----------VTAED----AKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIV 285 (361)
T ss_pred cCCHHHHHHHHHhCC-CCEEEec-C----------CCHHH----HHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHH
Confidence 356678999999985 3666652 1 12333 445667899999987654433333333456777888
Q ss_pred HhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHH
Q 017733 290 RAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 290 ~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
+.++.||++.||+ +..++.++|.-| +|+|++||+++
T Consensus 286 ~~~~~~vi~dGGIr~g~Dv~KALaLG-A~aV~iGr~~l 322 (361)
T cd04736 286 AATYKPVLIDSGIRRGSDIVKALALG-ANAVLLGRATL 322 (361)
T ss_pred HHhCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHH
Confidence 8888999999999 899999999999 99999999998
No 122
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.08 E-value=8.3e-05 Score=75.38 Aligned_cols=147 Identities=19% Similarity=0.140 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcce
Q 017733 149 LSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 149 mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i 228 (367)
++.++...+-++..+.++...++|.|.|-|.++||+ .+.+.+.|+.||+..+.-.|
T Consensus 216 l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~------------------------~~~~~~~i~~ik~~~p~~~v 271 (479)
T PRK07807 216 LRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGH------------------------QEKMLEALRAVRALDPGVPI 271 (479)
T ss_pred cchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCc------------------------cHHHHHHHHHHHHHCCCCeE
Confidence 334444444456667778888899999999999973 24679999999999864343
Q ss_pred EEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCC---ccc-c--CCchhhHHHHHHHHH---hcCCcEEEe
Q 017733 229 GMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQ-L--TDKSETQRSLLSMRR---AFEGTFIAA 299 (367)
Q Consensus 229 ~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~-~--~~~~~~~~~~~~ir~---~~~~pvi~~ 299 (367)
.. . +-.+.+ -++.|.++|+|+|-|.-+. +.. . ....++...+..+.+ ..++|||+-
T Consensus 272 ~a---g--------nv~t~~----~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 272 VA---G--------NVVTAE----GTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred Ee---e--------ccCCHH----HHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec
Confidence 32 1 111233 4555667999999764433 111 1 112244455554544 467899999
Q ss_pred CCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHH
Q 017733 300 GGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRF 335 (367)
Q Consensus 300 Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~ 335 (367)
||+ ++.++.++|+.| +|.|++|..|..-.+=|-.+
T Consensus 337 ggi~~~~~~~~al~~g-a~~v~~g~~~ag~~Espg~~ 372 (479)
T PRK07807 337 GGVRHPRDVALALAAG-ASNVMIGSWFAGTYESPGDL 372 (479)
T ss_pred CCCCCHHHHHHHHHcC-CCeeeccHhhccCccCCCce
Confidence 999 899999999999 99999999999887766543
No 123
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.08 E-value=7.2e-05 Score=76.36 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
..+-++.+.+||.|.|-|.++||+ .....+.|++||+..+.-.|... +.
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g~------------------------~~~~~~~i~~ik~~~p~~~vi~g-~v------ 297 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQGD------------------------SIYQLEMIKYIKKTYPELDVIGG-NV------ 297 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC------------------------cHHHHHHHHHHHHhCCCCcEEEe-cC------
Confidence 346667778899999999998862 23467899999998863333321 11
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEec--CCc-cccC----Cch--hhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHH
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIE--PRM-IQLT----DKS--ETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKA 310 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~--~~~-~~~~----~~~--~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~ 310 (367)
.+.+ -++.+.++|+|.|-++. +.. .... ..+ .....+..+.+.+++|||+-||| ++.++.++
T Consensus 298 ----~t~e----~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kA 369 (505)
T PLN02274 298 ----VTMY----QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKA 369 (505)
T ss_pred ----CCHH----HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHH
Confidence 1234 34556679999997743 211 1111 111 12234556677778999999999 89999999
Q ss_pred HHcCCCcEEcccHHHHhCCchHHH--HHhCCC
Q 017733 311 VAANYTDLVAFGRLFLANPDLPKR--FELNAP 340 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~k--~~~g~~ 340 (367)
|+.| +|.|++|..+..--+-+-. .++|+.
T Consensus 370 la~G-A~~V~vGs~~~~t~Esp~~~~~~~g~~ 400 (505)
T PLN02274 370 LTLG-ASTVMMGSFLAGTTEAPGEYFYQDGVR 400 (505)
T ss_pred HHcC-CCEEEEchhhcccccCCcceeeeCCeE
Confidence 9999 9999999999876544333 235543
No 124
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.07 E-value=2.2e-05 Score=72.14 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=72.5
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+++.|++.++++.-..... ....+...++.+++.++.||+.+||+ +.++++.++..| +|.|.+++.++.|
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G-~~~vilg~~~l~~ 109 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLG-ADKVSINTAALEN 109 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhcC
Confidence 45688899999999999876543211 22346677888999999999999999 899999999888 9999999999999
Q ss_pred CchHHHHHhC
Q 017733 329 PDLPKRFELN 338 (367)
Q Consensus 329 P~l~~k~~~g 338 (367)
|++..++.+.
T Consensus 110 ~~~~~~~~~~ 119 (232)
T TIGR03572 110 PDLIEEAARR 119 (232)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 125
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.06 E-value=0.00014 Score=67.36 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhH----------hHHHHHHHHHHHHHhCCc-c
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENR----------CRFALEVVEAVVREIGAE-R 227 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr----------~r~~~eii~aiR~~vg~~-~ 227 (367)
+.+.+.++.+.++|.|.+||.. |.++--.| |-.++|- .++..++++++|+.+.-. .
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~i-----------PfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~ 80 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGI-----------PFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV 80 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEE
Confidence 5788889999999999999983 22333333 2223322 358899999999987321 3
Q ss_pred eEEEeCCC-----cccc----cc------CCCChHHHHHHHHHHhhhcCccEEEEecCCccc------------------
Q 017733 228 VGMRLSPY-----AECA----EA------VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ------------------ 274 (367)
Q Consensus 228 i~vrls~~-----~~~~----~~------~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~------------------ 274 (367)
+++.+++. +.+- .. ..+.+.|+...+.+.+.+.|++.+-+..+....
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS 160 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEe
Confidence 45577751 1111 00 112356666777777788888776543332110
Q ss_pred --c--CC----chhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHH
Q 017733 275 --L--TD----KSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 275 --~--~~----~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
+ .. .....+.++.+|+..+.||++.||+ +++++.++++. +|.|.+|.+++
T Consensus 161 ~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv 219 (242)
T cd04724 161 RTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALV 219 (242)
T ss_pred CCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHH
Confidence 0 00 1122356778888888999999999 68899998866 99999998876
No 126
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.05 E-value=4.9e-05 Score=71.27 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcccccc
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEA 241 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~ 241 (367)
+.++.+.+.||..++|..+. . + ...-.+.|++||+.+|++ .|.+..|.
T Consensus 88 ~~~~~~~~~Gf~~~KiKvg~---------------~-----~----~~~d~~~v~~vr~~~g~~~~l~vDaN~------- 136 (263)
T cd03320 88 GEAKAAYGGGYRTVKLKVGA---------------T-----S----FEEDLARLRALREALPADAKLRLDANG------- 136 (263)
T ss_pred HHHHHHHhCCCCEEEEEECC---------------C-----C----hHHHHHHHHHHHHHcCCCCeEEEeCCC-------
Confidence 44566677899999998642 0 0 123478899999999875 45555543
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
..+.+++..+++.|++.++.|++ +|. . +.+....+.++ .++||.+...+ +++++.++++.+.+|+|.
T Consensus 137 --~w~~~~A~~~~~~l~~~~i~~iE--qP~-----~-~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~ 204 (263)
T cd03320 137 --GWSLEEALAFLEALAAGRIEYIE--QPL-----P-PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGALV 204 (263)
T ss_pred --CCCHHHHHHHHHhhcccCCceEE--CCC-----C-hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEEE
Confidence 23578899999999999999988 441 1 22334445555 67899998887 899999999999999886
Q ss_pred c
Q 017733 321 F 321 (367)
Q Consensus 321 ~ 321 (367)
+
T Consensus 205 ~ 205 (263)
T cd03320 205 L 205 (263)
T ss_pred E
Confidence 5
No 127
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.02 E-value=2.6e-05 Score=72.21 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=72.4
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+.+.|++.+|+..-+.. .....+.+.++.+.+.+.+||.+.||+ |.++++.++..| ||-|.+|..++.||
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~G-a~kvviGs~~l~~p 111 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATG-CARVNIGTAALENP 111 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchHhCCH
Confidence 35788888999999999765432 234456688899999999999999999 899999999999 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
++..++.+.
T Consensus 112 ~l~~~i~~~ 120 (241)
T PRK14024 112 EWCARVIAE 120 (241)
T ss_pred HHHHHHHHH
Confidence 999998764
No 128
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.01 E-value=0.001 Score=62.98 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCC---ccc-
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY---AEC- 238 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~---~~~- 238 (367)
+..++|.++||+.|.+-+.+ -+++...+.+.++++-.++. |- .|...+... ++.
T Consensus 88 e~i~~ai~~Gf~sVmid~s~--------------------l~~~eni~~t~~v~~~a~~~-gv-~Ve~ElG~~gg~ed~~ 145 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSH--------------------LPFEENLALTKKVVEIAHAK-GV-SVEAELGTLGGIEDGV 145 (282)
T ss_pred HHHHHHHHcCCCEEEECCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEeeCCCcCccccc
Confidence 44555566777777776544 14555566677777666653 21 233333321 111
Q ss_pred cc-cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCC--chhhHHHHHHHHHhcCCcEEEeC--CCCHHHHHHHHHc
Q 017733 239 AE-AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTD--KSETQRSLLSMRRAFEGTFIAAG--GYSRDEGNKAVAA 313 (367)
Q Consensus 239 ~~-~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~--~~~~~~~~~~ir~~~~~pvi~~G--git~~~a~~~L~~ 313 (367)
.+ .....+++++.++.+ +.|+|||-++-++....+. .....+.++.|++.+++|+++-| |++.++..++++.
T Consensus 146 ~g~~~~~t~~eea~~f~~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~ 222 (282)
T TIGR01859 146 DEKEAELADPDEAEQFVK---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKL 222 (282)
T ss_pred cccccccCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHc
Confidence 00 001224566655543 3699999987565432222 22345678999999999999888 8999999999999
Q ss_pred CCCcEEcccHHHHh
Q 017733 314 NYTDLVAFGRLFLA 327 (367)
Q Consensus 314 G~~D~V~~gR~~la 327 (367)
| ++-|.++..+..
T Consensus 223 G-i~kiNv~T~l~~ 235 (282)
T TIGR01859 223 G-IAKINIDTDCRI 235 (282)
T ss_pred C-CCEEEECcHHHH
Confidence 9 899999988763
No 129
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.01 E-value=0.00026 Score=63.46 Aligned_cols=130 Identities=21% Similarity=0.165 Sum_probs=85.3
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEE-eCCCccccccCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMR-LSPYAECAEAVD 243 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vr-ls~~~~~~~~~~ 243 (367)
++.+.++|.|.|-+|+.-+ ...+.++++.+|+. | -.+++- +++.
T Consensus 70 ~~~~~~aGad~i~~h~~~~-------------------------~~~~~~~i~~~~~~-g-~~~~v~~~~~~-------- 114 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAP-------------------------LSTIKKAVKAAKKY-G-KEVQVDLIGVE-------- 114 (202)
T ss_pred HHHHHhcCCCEEEEEeeCC-------------------------HHHHHHHHHHHHHc-C-CeEEEEEeCCC--------
Confidence 3667789999999986321 12346778888863 3 244543 4442
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccH
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR 323 (367)
+.++.. + +...|+|++-+.........+.......++.+++..+.|+++.||++++.+.++++.| +|.|.+|+
T Consensus 115 --t~~e~~---~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~G-ad~vvvGs 187 (202)
T cd04726 115 --DPEKRA---K-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAG-ADIVIVGR 187 (202)
T ss_pred --CHHHHH---H-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcC-CCEEEEee
Confidence 233332 2 4456899987742211111111223455666776667899999999999999999999 99999999
Q ss_pred HHHhCCchHHHHH
Q 017733 324 LFLANPDLPKRFE 336 (367)
Q Consensus 324 ~~ladP~l~~k~~ 336 (367)
+++..+++...++
T Consensus 188 ai~~~~d~~~~~~ 200 (202)
T cd04726 188 AITGAADPAEAAR 200 (202)
T ss_pred hhcCCCCHHHHHh
Confidence 9998777655443
No 130
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.00 E-value=0.00014 Score=64.79 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=94.8
Q ss_pred HHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChH
Q 017733 168 AIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 168 a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~ 247 (367)
|++||.|-|||- + .+.|.. ..| .|+ ..-++++.++.|+..+..++.|-+-. -.+.
T Consensus 77 aV~AGAdliEIG--N---fDsFY~---qGr------~f~--a~eVL~Lt~~tR~LLP~~~LsVTVPH---------iL~l 131 (242)
T PF04481_consen 77 AVKAGADLIEIG--N---FDSFYA---QGR------RFS--AEEVLALTRETRSLLPDITLSVTVPH---------ILPL 131 (242)
T ss_pred HHHhCCCEEEec--c---hHHHHh---cCC------eec--HHHHHHHHHHHHHhCCCCceEEecCc---------cccH
Confidence 356999999972 2 234431 111 122 45688999999999986688887732 3467
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccCCc---------hhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcE
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDK---------SETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDL 318 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~---------~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~ 318 (367)
++-.+++..|+++|+|+|-.-+++-..+... .+.......|.+.+++||++..|++.-.+--++..| +..
T Consensus 132 d~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaG-AsG 210 (242)
T PF04481_consen 132 DQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAG-ASG 210 (242)
T ss_pred HHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcC-Ccc
Confidence 7788999999999999998755443322211 122334557888999999999999887888889999 889
Q ss_pred EcccHHHH
Q 017733 319 VAFGRLFL 326 (367)
Q Consensus 319 V~~gR~~l 326 (367)
|++|.+.=
T Consensus 211 VGVGSavn 218 (242)
T PF04481_consen 211 VGVGSAVN 218 (242)
T ss_pred cchhHHhh
Confidence 99998753
No 131
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.99 E-value=3.4e-05 Score=70.87 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=71.9
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+++.|++.+++..-.... .+...+.+.++.+++.++.||+++||+ +.+++++++..| +|.|.+++.++.+
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~~-~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vilg~~~l~~ 109 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGAK-AGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAG-VSRVIIGTAAVKN 109 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEECchHHhC
Confidence 3468888999999999997642211 123356778888999999999999999 899999999998 9999999999999
Q ss_pred CchHHHHHhC
Q 017733 329 PDLPKRFELN 338 (367)
Q Consensus 329 P~l~~k~~~g 338 (367)
|++..++.+.
T Consensus 110 ~~~l~ei~~~ 119 (233)
T PRK00748 110 PELVKEACKK 119 (233)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 132
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.99 E-value=0.00011 Score=74.88 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
++.+-|+.+.++|+|.|+|-.+||+ .+..++.|+.+|+..+.. +.|.-.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~------------------------~~~~~~~i~~ir~~~~~~-~~V~aG------ 290 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGY------------------------SEWQKRTLDWIREKYGDS-VKVGAG------ 290 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccc------------------------cHHHHHHHHHHHHhCCCC-ceEEec------
Confidence 3445666678899999999888862 234579999999998632 222111
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCc---c---ccCCchhhHHHHHHHHHh-------cC--CcEEEeCCC-C
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRM---I---QLTDKSETQRSLLSMRRA-------FE--GTFIAAGGY-S 303 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~---~---~~~~~~~~~~~~~~ir~~-------~~--~pvi~~Ggi-t 303 (367)
+-.+.+ -++.|.++|+|+|-|..+.- . ......+....+..+.++ .. +|||+-||+ +
T Consensus 291 ---nV~t~e----~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~ 363 (502)
T PRK07107 291 ---NVVDRE----GFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVY 363 (502)
T ss_pred ---cccCHH----HHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCc
Confidence 111233 34456679999998754321 1 112223344444333332 23 799999999 7
Q ss_pred HHHHHHHHHcCCCcEEcccHHHHhCCchH
Q 017733 304 RDEGNKAVAANYTDLVAFGRLFLANPDLP 332 (367)
Q Consensus 304 ~~~a~~~L~~G~~D~V~~gR~~ladP~l~ 332 (367)
.-+.-++|+.| +|+|++||.|..--+-|
T Consensus 364 ~gdi~KAla~G-A~~vm~G~~~ag~~esp 391 (502)
T PRK07107 364 DYHMTLALAMG-ADFIMLGRYFARFDESP 391 (502)
T ss_pred hhHHHHHHHcC-CCeeeeChhhhccccCC
Confidence 89999999999 99999999997754433
No 133
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.98 E-value=0.0002 Score=70.04 Aligned_cols=117 Identities=12% Similarity=0.211 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++.+.++.+++.||..++|..+. ..-.+.|++||+++| + .|.+..|.
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv~~---------------------------~~d~~~l~~vr~~~g-~~~l~lDaN~--- 187 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKIKP---------------------------GWDVEPLKAVRERFP-DIPLMADANS--- 187 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCh---------------------------HHHHHHHHHHHHHCC-CCeEEEECCC---
Confidence 345667777788999999998631 123678999999998 4 45554443
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
..+.+++. +++.|++.++.|++ ++. .+.+....+.+++.+++||.+...+ +++++..+++.|.+
T Consensus 188 ------~~~~~~a~-~~~~l~~~~i~~iE--eP~------~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~ 252 (354)
T cd03317 188 ------AYTLADIP-LLKRLDEYGLLMIE--QPL------AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGAC 252 (354)
T ss_pred ------CCCHHHHH-HHHHhhcCCccEEE--CCC------ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCC
Confidence 22345554 78999999999988 442 1223455677899999999888777 89999999999988
Q ss_pred cEEcc
Q 017733 317 DLVAF 321 (367)
Q Consensus 317 D~V~~ 321 (367)
|+|.+
T Consensus 253 d~~~i 257 (354)
T cd03317 253 KIINI 257 (354)
T ss_pred CEEEe
Confidence 98754
No 134
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.96 E-value=0.00037 Score=64.03 Aligned_cols=129 Identities=17% Similarity=0.243 Sum_probs=80.0
Q ss_pred HHHHHhCCCEEEEecc--cchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 166 RNAIEAGFDGVEIHGA--NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~--~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
..+.++|+|+|-+|.+ + + ....+.++.+|+. | ..+++=+++.
T Consensus 82 ~~~~~~gad~v~vH~~q~~---------------~-----------d~~~~~~~~i~~~-g-~~iGls~~~~-------- 125 (229)
T PLN02334 82 PDFAKAGASIFTFHIEQAS---------------T-----------IHLHRLIQQIKSA-G-MKAGVVLNPG-------- 125 (229)
T ss_pred HHHHHcCCCEEEEeecccc---------------c-----------hhHHHHHHHHHHC-C-CeEEEEECCC--------
Confidence 3447799999999986 1 0 1234555555543 1 2566655541
Q ss_pred CChHHHHHHHHHHhhhc-CccEEEEe--cCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHcCCCcEE
Q 017733 244 SNPEALGLYMAKALNKF-KLLYLHVI--EPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGYSRDEGNKAVAANYTDLV 319 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~-Gvd~i~v~--~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V 319 (367)
.+.+. ++.+.+. |+||+-+- .++.......+.....++.+++.. +.|+.+-||++++.+.++++.| +|.|
T Consensus 126 -t~~~~----~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aG-ad~v 199 (229)
T PLN02334 126 -TPVEA----VEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAG-ANVI 199 (229)
T ss_pred -CCHHH----HHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcC-CCEE
Confidence 22332 2233344 38998542 122211111122334566677764 4789999999999999999999 9999
Q ss_pred cccHHHHhCCchHHHHH
Q 017733 320 AFGRLFLANPDLPKRFE 336 (367)
Q Consensus 320 ~~gR~~ladP~l~~k~~ 336 (367)
.+|++++..++....++
T Consensus 200 vvgsai~~~~d~~~~~~ 216 (229)
T PLN02334 200 VAGSAVFGAPDYAEVIS 216 (229)
T ss_pred EEChHHhCCCCHHHHHH
Confidence 99999998888544443
No 135
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.96 E-value=0.00033 Score=65.52 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAEC 238 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~ 238 (367)
+...++.+.++|.|+|++..-.| .+ +.... .+.+.+|++.+... ++.+.+-+.-..
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g-------------------~~--~~~~~-~~~~~~i~~~~~~~g~~liv~~~~~Gvh 149 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVG-------------------SD--TEWEQ-IRDLGMIAEICDDWGVPLLAMMYPRGPH 149 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecC-------------------Cc--hHHHH-HHHHHHHHHHHHHcCCCEEEEEeccCcc
Confidence 34557778899999999875332 11 11222 36777777776422 454433221000
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCC-------HHHHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYS-------RDEGNKAV 311 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit-------~~~a~~~L 311 (367)
. + ..+.+.....++...+.|+|||-++ + . .....++.+.+..++||++.||++ .+...+++
T Consensus 150 ~--~-~~~~~~~~~~~~~a~~~GADyikt~---~----~--~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~ 217 (258)
T TIGR01949 150 I--D-DRDPELVAHAARLGAELGADIVKTP---Y----T--GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAM 217 (258)
T ss_pred c--c-cccHHHHHHHHHHHHHHCCCEEecc---C----C--CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 1 1 1233444455677778999999864 1 1 134567778777889999999995 45566777
Q ss_pred HcCCCcEEcccHHHHhCCchHHHH
Q 017733 312 AANYTDLVAFGRLFLANPDLPKRF 335 (367)
Q Consensus 312 ~~G~~D~V~~gR~~ladP~l~~k~ 335 (367)
+.| ++.++++|.++..++....+
T Consensus 218 ~aG-a~Gia~g~~i~~~~dp~~~~ 240 (258)
T TIGR01949 218 EAG-AAGVAVGRNIFQHDDPVGIT 240 (258)
T ss_pred HcC-CcEEehhhHhhcCCCHHHHH
Confidence 998 89999999999998844433
No 136
>PLN02591 tryptophan synthase
Probab=97.96 E-value=0.00032 Score=65.19 Aligned_cols=154 Identities=13% Similarity=0.119 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhH----------hHHHHHHHHHHHHHhCCcce
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENR----------CRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr----------~r~~~eii~aiR~~vg~~~i 228 (367)
+.+.+.++.+.++|.|.|||-. |+++--.| |-.+++. .+-++++++++|+... .|+
T Consensus 16 e~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~-~p~ 81 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGV-----------PYSDPLAD--GPVIQAAATRALEKGTTLDSVISMLKEVAPQLS-CPI 81 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 5677778888899999999865 44555555 3333321 2356888888886532 243
Q ss_pred EE--EeCCC-----cccc----cc------CCCChHHHHHHHHHHhhhcCccEEEEecCCcccc----------------
Q 017733 229 GM--RLSPY-----AECA----EA------VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL---------------- 275 (367)
Q Consensus 229 ~v--rls~~-----~~~~----~~------~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~---------------- 275 (367)
.+ =+|+. +.|. +. ..+.+.++..++.+.+.+.|++.|.+..++....
T Consensus 82 ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 82 VLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred EEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 22 11210 0010 01 1245778888899999999999988765433210
Q ss_pred ------CC----chhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 276 ------TD----KSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 276 ------~~----~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
.. .......++.+|+..+.||+.+-|+ +++++.++++.| +|.|.+|.+++.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G-ADGvIVGSalVk 223 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG-ADGVIVGSAMVK 223 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-CCEEEECHHHHH
Confidence 00 1112346788999889999998889 699999999998 999999999964
No 137
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.94 E-value=0.00021 Score=66.57 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=59.6
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+++.|++.+-++.-....... ..+...++.+++.+++||+++||+ +++++.++++...+|.|++|+.+...
T Consensus 155 ~~~~~~~~~~~g~~~ii~~~i~~~g~~~-g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 155 AVEWAKEVEELGAGEILLTSMDRDGTKN-GYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCC-CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 4567888899999988775422111111 235677888999999999999999 89999999986339999999998865
No 138
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.94 E-value=0.00047 Score=64.34 Aligned_cols=142 Identities=13% Similarity=0.019 Sum_probs=93.1
Q ss_pred CCCCCChHHHHHHHH------------HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHH
Q 017733 145 PPRPLSIEEIPKIVN------------DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFA 212 (367)
Q Consensus 145 ~~~~mt~~eI~~ii~------------~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~ 212 (367)
..|.=+.++|.+|.+ .|..-|..+.++|.|-|+ +.. |.|-+
T Consensus 50 v~R~~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiID--eTe-------------------------~lrPa 102 (287)
T TIGR00343 50 VARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYID--ESE-------------------------VLTPA 102 (287)
T ss_pred eeecCCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEE--ccC-------------------------CCCcH
Confidence 445556677777654 566777888899999996 211 22235
Q ss_pred HHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc-----------------
Q 017733 213 LEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL----------------- 275 (367)
Q Consensus 213 ~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~----------------- 275 (367)
-+.+..+|+..+ -++.-.. .+.++++.- .+.|+|+|..+.-.++..
T Consensus 103 de~~~~~K~~f~-vpfmad~------------~~l~EAlra----i~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~ 165 (287)
T TIGR00343 103 DWTFHIDKKKFK-VPFVCGA------------RDLGEALRR----INEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQ 165 (287)
T ss_pred HHHHHHHHHHcC-CCEEccC------------CCHHHHHHH----HHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHH
Confidence 778888888762 2333211 124444322 356888886542211110
Q ss_pred --------------CCchhhHHHHHHHHHhcCCcEE--EeCCC-CHHHHHHHHHcCCCcEEcccHHHHh--CCch
Q 017733 276 --------------TDKSETQRSLLSMRRAFEGTFI--AAGGY-SRDEGNKAVAANYTDLVAFGRLFLA--NPDL 331 (367)
Q Consensus 276 --------------~~~~~~~~~~~~ir~~~~~pvi--~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la--dP~l 331 (367)
.......+.++.+++..++||+ +.||+ ||+++..+++.| ||.|.++++++. ||..
T Consensus 166 ~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG-AdGVaVGSaI~ks~dP~~ 239 (287)
T TIGR00343 166 IQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSNPEK 239 (287)
T ss_pred HhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC-CCEEEEhHHhhcCCCHHH
Confidence 0011234677888888899998 99999 999999999999 999999999996 6643
No 139
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.93 E-value=0.00031 Score=63.29 Aligned_cols=128 Identities=17% Similarity=0.125 Sum_probs=85.2
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
...++.|.+.|+|.|++..--|++.+. ......+-+.++++++...++.+-+-.
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~~-------------------~~~~~~~ei~~v~~~~~g~~lkvI~e~------- 125 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKSG-------------------DYEAVYEEIAAVVEACGGAPLKVILET------- 125 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhCC-------------------CHHHHHHHHHHHHHhcCCCeEEEEEec-------
Confidence 445677888999999998765533222 124456778888888863355442221
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc--CCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF--EGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
...+.++....++...++|+|||-++.+... ........+.+++.+ ++||.+.||+ |.+++.++++.| +|-
T Consensus 126 -~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~----~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g-~~r 199 (203)
T cd00959 126 -GLLTDEEIIKACEIAIEAGADFIKTSTGFGP----GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAG-ATR 199 (203)
T ss_pred -CCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC----CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhC-hhh
Confidence 1223566777888889999999987644321 112333444444444 5789999999 899999999999 887
Q ss_pred Ecc
Q 017733 319 VAF 321 (367)
Q Consensus 319 V~~ 321 (367)
++.
T Consensus 200 iG~ 202 (203)
T cd00959 200 IGT 202 (203)
T ss_pred ccC
Confidence 764
No 140
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.92 E-value=0.00014 Score=70.86 Aligned_cols=106 Identities=20% Similarity=0.140 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCC--------chh
Q 017733 209 CRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTD--------KSE 280 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~--------~~~ 280 (367)
..-+.+.|+.+|+..+..+|+||+... ...++. +....++|+|+|++....-..-.. .-+
T Consensus 187 ~edl~~~I~~Lr~~~~~~pVgvKl~~~---------~~~~~~---~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP 254 (368)
T PF01645_consen 187 IEDLAQLIEELRELNPGKPVGVKLVAG---------RGVEDI---AAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP 254 (368)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEEEE-S---------TTHHHH---HHHHHHTT-SEEEEE-TT---SSEECCHHHHC---
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEECCC---------CcHHHH---HHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc
Confidence 456889999999999767999999873 223322 222667899999997543221110 111
Q ss_pred hHHHHHHHHHh-----c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 281 TQRSLLSMRRA-----F--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 281 ~~~~~~~ir~~-----~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
....+..+.+. + ++.|+++|++ |+.++.++|.-| +|.|.+||+++.
T Consensus 255 ~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLG-AD~v~igt~~li 308 (368)
T PF01645_consen 255 TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALG-ADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT--SEEE-SHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcC-CCeeEecchhhh
Confidence 22222222222 1 3579999999 999999999999 999999999875
No 141
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.92 E-value=0.00022 Score=68.22 Aligned_cols=136 Identities=14% Similarity=0.131 Sum_probs=92.3
Q ss_pred HHHHHHHHHHH-hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 160 DFRLAARNAIE-AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~-aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+|.+..++... +|.|.|-|..+||| .....+.|+.||+..+..+|.. .
T Consensus 109 d~er~~~L~~~~~g~D~iviD~AhGh------------------------s~~~i~~ik~ik~~~P~~~vIa---G---- 157 (346)
T PRK05096 109 DFEKTKQILALSPALNFICIDVANGY------------------------SEHFVQFVAKAREAWPDKTICA---G---- 157 (346)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHHhCCCCcEEE---e----
Confidence 45555555553 79999999999984 3567999999999986534331 1
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCC---cccc---CCchhhHHHHH---HHHHhcCCcEEEeCCC-CHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQL---TDKSETQRSLL---SMRRAFEGTFIAAGGY-SRDEGN 308 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~~---~~~~~~~~~~~---~ir~~~~~pvi~~Ggi-t~~~a~ 308 (367)
+-.+ .+.++.|.++|+|.+-|--+. +... ....++...+. ...+...+|||+-||+ ++-+..
T Consensus 158 ----NV~T----~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~ 229 (346)
T PRK05096 158 ----NVVT----GEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVA 229 (346)
T ss_pred ----cccC----HHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHH
Confidence 1112 236667888999998764332 1111 11223443333 3344567899999999 788999
Q ss_pred HHHHcCCCcEEcccHHHHhCCchHHHH
Q 017733 309 KAVAANYTDLVAFGRLFLANPDLPKRF 335 (367)
Q Consensus 309 ~~L~~G~~D~V~~gR~~ladP~l~~k~ 335 (367)
++|..| +|+||||..|...-+-|-++
T Consensus 230 KAlaaG-Ad~VMlGsllAGt~EsPGe~ 255 (346)
T PRK05096 230 KAFGGG-ADFVMLGGMLAGHEESGGEI 255 (346)
T ss_pred HHHHcC-CCEEEeChhhcCcccCCCcE
Confidence 999999 99999999988766555443
No 142
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.91 E-value=0.00025 Score=64.23 Aligned_cols=131 Identities=14% Similarity=0.071 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
...++.|.++|.|.|++..-.|+|.+ ++.+...+-+.+|+++++..++.|-+-.
T Consensus 73 ~~E~~~Av~~GAdEiDvv~n~g~l~~-------------------g~~~~v~~ei~~i~~~~~g~~lKvIlE~------- 126 (211)
T TIGR00126 73 LYETKEAIKYGADEVDMVINIGALKD-------------------GNEEVVYDDIRAVVEACAGVLLKVIIET------- 126 (211)
T ss_pred HHHHHHHHHcCCCEEEeecchHhhhC-------------------CcHHHHHHHHHHHHHHcCCCeEEEEEec-------
Confidence 34456788999999998876543322 1234567778888888863355552321
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc--CCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF--EGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
...+.++....++...++|+|||-.+-+... ........+.+++.+ +++|-+.||+ |.+++.++++.| +|.
T Consensus 127 -~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~----~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aG-a~r 200 (211)
T TIGR00126 127 -GLLTDEEIRKACEICIDAGADFVKTSTGFGA----GGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAG-ASR 200 (211)
T ss_pred -CCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC----CCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHh-hHH
Confidence 1233456667888889999999988655321 122334445555555 4789999999 899999999999 898
Q ss_pred EcccHH
Q 017733 319 VAFGRL 324 (367)
Q Consensus 319 V~~gR~ 324 (367)
++...+
T Consensus 201 iGts~~ 206 (211)
T TIGR00126 201 IGASAG 206 (211)
T ss_pred hCcchH
Confidence 888665
No 143
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.90 E-value=0.00052 Score=62.89 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHh-CCCEEEE--ecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCC
Q 017733 159 NDFRLAARNAIEA-GFDGVEI--HGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~a-GfdgVei--~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~ 235 (367)
++=++.|+.+.|+ |-|-|+| ....-|| .--..+.|++.++.+.+....+=+..
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~~l-----------------------lpd~~~tv~aa~~L~~~Gf~vlpyc~- 131 (250)
T PRK00208 76 EEAVRTARLAREALGTNWIKLEVIGDDKTL-----------------------LPDPIETLKAAEILVKEGFVVLPYCT- 131 (250)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCC-----------------------CcCHHHHHHHHHHHHHCCCEEEEEeC-
Confidence 4557788888885 5666654 3322111 11257889999999876543331111
Q ss_pred ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcC
Q 017733 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
+ + ..++++|++.|++++-......+. .....+.+.++.+++..++|||+.||| +++++.++++.|
T Consensus 132 --------~-d----~~~ak~l~~~G~~~vmPlg~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelG 197 (250)
T PRK00208 132 --------D-D----PVLAKRLEEAGCAAVMPLGAPIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELG 197 (250)
T ss_pred --------C-C----HHHHHHHHHcCCCEeCCCCcCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC
Confidence 1 1 247888999999998321111221 112234677888999888999999999 899999999999
Q ss_pred CCcEEcccHHHHh--CCch
Q 017733 315 YTDLVAFGRLFLA--NPDL 331 (367)
Q Consensus 315 ~~D~V~~gR~~la--dP~l 331 (367)
+|.|.++.+... ||..
T Consensus 198 -AdgVlV~SAItka~dP~~ 215 (250)
T PRK00208 198 -ADAVLLNTAIAVAGDPVA 215 (250)
T ss_pred -CCEEEEChHhhCCCCHHH
Confidence 999999999986 4543
No 144
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.90 E-value=0.00044 Score=62.23 Aligned_cols=129 Identities=21% Similarity=0.216 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEe-CCCccccccC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRL-SPYAECAEAV 242 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrl-s~~~~~~~~~ 242 (367)
.++.+.++|.|.|-+|+-.+ ...+.++++.+|+. | -.+++-+ ++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------------------~~~~~~~i~~~~~~-g-~~~~~~~~~~-------- 112 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------------------DATIKGAVKAAKKH-G-KEVQVDLINV-------- 112 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc-C-CEEEEEecCC--------
Confidence 46667899999999986431 02346788888874 3 2556553 33
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc-EEEeCCCCHHHHHHHHHcCCCcEEcc
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT-FIAAGGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
..+.++ ++.+.+.|+|++.+..+...+.. .+.....++.+++.++.+ +.+.||++++.+.++++.| +|.|.+
T Consensus 113 -~t~~~~----~~~~~~~g~d~v~~~pg~~~~~~-~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~G-a~~v~v 185 (206)
T TIGR03128 113 -KDKVKR----AKELKELGADYIGVHTGLDEQAK-GQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLG-PDIVIV 185 (206)
T ss_pred -CChHHH----HHHHHHcCCCEEEEcCCcCcccC-CCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcC-CCEEEE
Confidence 122332 33345569999987422211111 122345567777776654 5568999999999999999 999999
Q ss_pred cHHHHhCCchHHH
Q 017733 322 GRLFLANPDLPKR 334 (367)
Q Consensus 322 gR~~ladP~l~~k 334 (367)
||.++..++....
T Consensus 186 Gsai~~~~d~~~~ 198 (206)
T TIGR03128 186 GGAITKAADPAEA 198 (206)
T ss_pred eehhcCCCCHHHH
Confidence 9999987774333
No 145
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.90 E-value=0.00013 Score=71.24 Aligned_cols=102 Identities=24% Similarity=0.129 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHH
Q 017733 209 CRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSM 288 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i 288 (367)
..+.-+-|+.+|+.++ -||.||=-. +.++ ++.+.+.|+|+|.|++..-.+....++....+..+
T Consensus 210 ~~~~w~~i~~~~~~~~-~pvivKgv~-----------~~~d----a~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i 273 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQWK-LPVIVKGVL-----------SPED----AKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEI 273 (356)
T ss_dssp TT-SHHHHHHHHHHCS-SEEEEEEE------------SHHH----HHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHH
T ss_pred CCCCHHHHHHHhcccC-CceEEEecc-----------cHHH----HHHHHhcCCCEEEecCCCcccCccccccccccHHH
Confidence 3466678999999884 366665432 2333 34567899999999854333333444456677788
Q ss_pred HHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 289 RRAFE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 289 r~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
++.++ +||++.||+ +..++.++|.-| +|+|++||+++.
T Consensus 274 ~~~~~~~~~i~~dgGir~g~Dv~kalaLG-A~~v~igr~~l~ 314 (356)
T PF01070_consen 274 RAAVGDDIPIIADGGIRRGLDVAKALALG-ADAVGIGRPFLY 314 (356)
T ss_dssp HHHHTTSSEEEEESS--SHHHHHHHHHTT--SEEEESHHHHH
T ss_pred HhhhcCCeeEEEeCCCCCHHHHHHHHHcC-CCeEEEccHHHH
Confidence 88774 899999999 899999999999 999999999886
No 146
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=97.88 E-value=0.00036 Score=67.49 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+++++.++++++.||..++|+.+ + . .-.++++++|+++++..|.+..|.
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv~----------~----~-------------~d~~~v~~vr~~~~~~~l~vDaN~---- 182 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKIT----------P----Q-------------IMHQLVKLRRLRFPQIPLVIDANE---- 182 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeC----------C----c-------------hhHHHHHHHHHhCCCCcEEEECCC----
Confidence 34566777778889999999852 1 1 125789999999953244544443
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTD 317 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 317 (367)
..+.+++ ..++.|++.++.|++ ++. .+......+.+++.+++||.+...+ ++.++..+++.+.+|
T Consensus 183 -----~~~~~~a-~~~~~l~~~~~~~iE--eP~------~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d 248 (324)
T TIGR01928 183 -----SYDLQDF-PRLKELDRYQLLYIE--EPF------KIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVK 248 (324)
T ss_pred -----CCCHHHH-HHHHHHhhCCCcEEE--CCC------ChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCC
Confidence 1234444 568999999999988 442 1223456788999999999998777 899999999999999
Q ss_pred EEcc
Q 017733 318 LVAF 321 (367)
Q Consensus 318 ~V~~ 321 (367)
++.+
T Consensus 249 vi~~ 252 (324)
T TIGR01928 249 VINI 252 (324)
T ss_pred EEEe
Confidence 8864
No 147
>PLN02979 glycolate oxidase
Probab=97.88 E-value=0.00023 Score=69.15 Aligned_cols=99 Identities=15% Similarity=0.009 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
.-+-|+.+|+..+ -||.||--. +.+ -++.+.+.|+|.|.|++..-.+....+.....+..+++.
T Consensus 211 tW~dl~wlr~~~~-~PvivKgV~-----------~~~----dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 211 SWKDVQWLQTITK-LPILVKGVL-----------TGE----DARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 274 (366)
T ss_pred CHHHHHHHHhccC-CCEEeecCC-----------CHH----HHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHH
Confidence 4477889998774 367776532 123 344567899999999765433333333345566677776
Q ss_pred cC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 292 FE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 292 ~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
+. +||++.||| +..++.++|.-| +|+|++||+++.
T Consensus 275 ~~~~~~Vi~dGGIr~G~Di~KALALG-AdaV~iGrp~L~ 312 (366)
T PLN02979 275 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 312 (366)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 54 789999999 899999999999 999999999984
No 148
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.87 E-value=7.4e-05 Score=69.03 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=70.2
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+.+.|++++|+..-+... .....+...++.+.+.+++|++.+||+ ++++++.+++.| +|.|.+|..++.||
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~-~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~G-a~~v~iGs~~~~~~ 112 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAF-EGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLG-VDRVILGTAAVENP 112 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhh-cCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcC-CCEEEEChHHhhCh
Confidence 457778888999999986443211 122345567888888889999999999 899999999998 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
+++.++.+.
T Consensus 113 ~~~~~i~~~ 121 (241)
T PRK13585 113 EIVRELSEE 121 (241)
T ss_pred HHHHHHHHH
Confidence 999998876
No 149
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.86 E-value=0.00026 Score=64.00 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=75.0
Q ss_pred HHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc---ccCCchhhHHHHHHHHHh
Q 017733 216 VEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI---QLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 216 i~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~---~~~~~~~~~~~~~~ir~~ 291 (367)
+...|+..++. .|++ |.. +.++ +...++.|+||+-+. +-+. .+...+.....++.+++.
T Consensus 94 ~~~ar~~~~~~~iIG~--S~h----------~~ee----a~~A~~~g~DYv~~G-pifpT~tK~~~~~~G~~~l~~~~~~ 156 (211)
T COG0352 94 LAEARELLGPGLIIGL--STH----------DLEE----ALEAEELGADYVGLG-PIFPTSTKPDAPPLGLEGLREIREL 156 (211)
T ss_pred hHHHHHhcCCCCEEEe--ecC----------CHHH----HHHHHhcCCCEEEEC-CcCCCCCCCCCCccCHHHHHHHHHh
Confidence 45567777765 5665 431 2333 334566789999873 2222 122233445677889999
Q ss_pred cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 292 FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 292 ~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
.++|+++-||++++.+.++++.| +|+|++-|+++..++....+++
T Consensus 157 ~~iP~vAIGGi~~~nv~~v~~~G-a~gVAvvsai~~a~d~~~a~~~ 201 (211)
T COG0352 157 VNIPVVAIGGINLENVPEVLEAG-ADGVAVVSAITSAADPAAAAKA 201 (211)
T ss_pred CCCCEEEEcCCCHHHHHHHHHhC-CCeEEehhHhhcCCCHHHHHHH
Confidence 89999999999999999999999 9999999999998887665543
No 150
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.86 E-value=0.0011 Score=60.16 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=57.5
Q ss_pred HhhhcCccEEEEecCCccc---c-CCchhhHHHHHHHHHh-cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 256 ALNKFKLLYLHVIEPRMIQ---L-TDKSETQRSLLSMRRA-FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 256 ~L~~~Gvd~i~v~~~~~~~---~-~~~~~~~~~~~~ir~~-~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
...+.|+||+-++. -+.. + ...+.....++.+.+. .++||++-||++++++.++++.| ++.|++.+++...+|
T Consensus 117 ~A~~~gaDYi~lgp-vf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~G-a~GiAvisai~~~~d 194 (211)
T PRK03512 117 VALAARPSYIALGH-VFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATG-VGSIAVVSAITQAAD 194 (211)
T ss_pred HHhhcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEhhHhhCCCC
Confidence 34567999998753 2211 1 1112233445556555 57999999999999999999999 999999999998888
Q ss_pred hHHHHH
Q 017733 331 LPKRFE 336 (367)
Q Consensus 331 l~~k~~ 336 (367)
+...++
T Consensus 195 ~~~~~~ 200 (211)
T PRK03512 195 WRAATA 200 (211)
T ss_pred HHHHHH
Confidence 766554
No 151
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=97.86 E-value=0.00038 Score=66.80 Aligned_cols=109 Identities=10% Similarity=0.124 Sum_probs=82.4
Q ss_pred HhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHH
Q 017733 170 EAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEA 248 (367)
Q Consensus 170 ~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~ 248 (367)
+.||..++|..|.+ + ...-.+.|++||+++|++ .|.+..|. ..+.+
T Consensus 122 ~~Gf~~~KiKvG~~--------------------~----~~~d~~~v~~vr~~~g~~~~l~vDaN~---------~w~~~ 168 (307)
T TIGR01927 122 AEGFRTFKWKVGVG--------------------E----LAREGMLVNLLLEALPDKAELRLDANG---------GLSPD 168 (307)
T ss_pred hCCCCEEEEEeCCC--------------------C----hHHHHHHHHHHHHHcCCCCeEEEeCCC---------CCCHH
Confidence 68999999986431 1 223478999999999864 35544443 34577
Q ss_pred HHHHHHHHhhh---cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 249 LGLYMAKALNK---FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 249 ~~~~l~~~L~~---~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
++.++++.|++ .+++||+ +|. . .. ..++.+++.+++||.+...+ +++++..++..+.+|+|.+
T Consensus 169 ~A~~~~~~l~~~~~~~i~~iE--qP~-----~--~~-~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 169 EAQQFLKALDPNLRGRIAFLE--EPL-----P--DA-DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred HHHHHHHhcccccCCCceEEe--CCC-----C--CH-HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 89999999997 7899988 442 1 11 55777999999999998887 8999999999998898765
No 152
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.85 E-value=0.0012 Score=64.22 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=69.8
Q ss_pred HHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc--ccCCchhhHHHHHHHHHhc
Q 017733 216 VEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI--QLTDKSETQRSLLSMRRAF 292 (367)
Q Consensus 216 i~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~--~~~~~~~~~~~~~~ir~~~ 292 (367)
+...|+..|++ .|++ |.. +.+++ ....+.|+|||-++.-..+ .+...+.....++.+++.+
T Consensus 230 ~~~aR~llg~~~iIG~--S~H----------s~~e~----~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~ 293 (347)
T PRK02615 230 LAVARQLLGPEKIIGR--STT----------NPEEM----AKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA 293 (347)
T ss_pred HHHHHHhcCCCCEEEE--ecC----------CHHHH----HHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC
Confidence 34557778776 4565 331 13332 2334579999987532111 1222233456788888888
Q ss_pred CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHH
Q 017733 293 EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPK 333 (367)
Q Consensus 293 ~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~ 333 (367)
++|+++-|||+++.+.++++.| +|+|++.++++..++...
T Consensus 294 ~iPv~AiGGI~~~ni~~l~~~G-a~gVAvisaI~~a~dp~~ 333 (347)
T PRK02615 294 PIPWFAIGGIDKSNIPEVLQAG-AKRVAVVRAIMGAEDPKQ 333 (347)
T ss_pred CCCEEEECCCCHHHHHHHHHcC-CcEEEEeHHHhCCCCHHH
Confidence 9999999999999999999999 999999999998666443
No 153
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.85 E-value=9.1e-05 Score=66.64 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=68.6
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++...+.|+|-+..-.=+.+ ........+.++++.+.+-+|+..+||+ +.++++++|..| +|=|++..+++.||
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aG-ADKVSINsaAv~~p 110 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAG-ADKVSINSAAVKDP 110 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcC-CCeeeeChhHhcCh
Confidence 35888889999885533211111 1123446778899999999999999999 899999999999 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
+|+.++.+-
T Consensus 111 ~lI~~~a~~ 119 (256)
T COG0107 111 ELITEAADR 119 (256)
T ss_pred HHHHHHHHH
Confidence 999998764
No 154
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.85 E-value=0.00059 Score=63.79 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhh----------HhHHHHHHHHHHHHHhCCcce
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLEN----------RCRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~en----------r~r~~~eii~aiR~~vg~~~i 228 (367)
+.+.+.++.+.+.|.|.|||-. |.++--.| |-.++. ..+-++++++++|+.....++
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~ 92 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGI-----------PFSDPVAD--GPVIQAASLRALAAGVTLADVFELVREIREKDPTIPI 92 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 5678888888899999999865 55555555 333332 233568888888854322343
Q ss_pred EEEe--CCCc-----ccc----cc------CCCChHHHHHHHHHHhhhcCccEEEEecCCccc-----------------
Q 017733 229 GMRL--SPYA-----ECA----EA------VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ----------------- 274 (367)
Q Consensus 229 ~vrl--s~~~-----~~~----~~------~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~----------------- 274 (367)
.+-. |+.- .+. +. ..+.+.++...+.+.+.+.|++.|-+..++...
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v 172 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV 172 (258)
T ss_pred EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 3211 2210 000 00 124577888888888889999988754433210
Q ss_pred -----cC----CchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 275 -----LT----DKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 275 -----~~----~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
.. ......+.++.+|+..+.||++++|+ +++++.++++ . +|.|.+|.+++.
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv~ 233 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALVK 233 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHHH
Confidence 00 00123357889999989999999999 8999999885 4 999999999873
No 155
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.84 E-value=0.00052 Score=64.28 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhh---H-------hHHHHHHHHHHHHHhCCcce
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLEN---R-------CRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~en---r-------~r~~~eii~aiR~~vg~~~i 228 (367)
+.+.+.++.+.++|.|.|||-. |.++--.| |-.+++ | .+-++++++++|+... .|+
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~-~p~ 94 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGI-----------PYSDPLAD--GPIIQEASNRALKQGINLNKILSILSEVNGEIK-API 94 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 5678888888899999999865 44555555 333322 1 2356889999986532 243
Q ss_pred EE--EeCCC-----cccc-c--------c-CCCChHHHHHHHHHHhhhcCccEEEEecCCcccc----------------
Q 017733 229 GM--RLSPY-----AECA-E--------A-VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL---------------- 275 (367)
Q Consensus 229 ~v--rls~~-----~~~~-~--------~-~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~---------------- 275 (367)
.+ =+|+. +.|. . . ..+.+.++..++.+.+.+.|++.+-+..++....
T Consensus 95 vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 95 VIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred EEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 21 11211 0010 0 0 1245777788888888888988887765432110
Q ss_pred ------CCc----hhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHH
Q 017733 276 ------TDK----SETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 276 ------~~~----~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
... ....+.++.+|+.++.|+..+.|+ ++++++++.+.| +|.|.+|.+++
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G-ADGvVVGSalv 235 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN-INGIVIGSACV 235 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-CCEEEECHHHH
Confidence 000 112346778999889999999999 699999999998 99999999994
No 156
>PRK08185 hypothetical protein; Provisional
Probab=97.84 E-value=0.0028 Score=59.96 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=111.7
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+..+-+++++.+.++++++|+...... + .+.. +++ +.+|.. +... |..+.+
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~----~--~~~~-~~~~~~~~a~~~~vPV~-----lHLD--Hg~~~e------ 82 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELD----F--LGDN-FFAYVRERAKRSPVPFV-----IHLD--HGATIE------ 82 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhh----h--ccHH-HHHHHHHHHHHCCCCEE-----EECC--CCCCHH------
Confidence 4678889999999999999999653221 0 0000 100 001100 0001 111222
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~ 236 (367)
..+.|.++||+.|-+-+.+ -+++...+.+.++++..++.-=+- .|+. ++..+
T Consensus 83 -----~i~~ai~~Gf~SVM~D~S~--------------------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e 136 (283)
T PRK08185 83 -----DVMRAIRCGFTSVMIDGSL--------------------LPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTG 136 (283)
T ss_pred -----HHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcc
Confidence 2344556788888776654 256778889999998887642111 3555 54322
Q ss_pred cccccCC----CChHHHHHHHHHHhhhcCccEEEEecCCccccCCc----hhhHHHHHHHHHhcCCcEEEeCCC--CHHH
Q 017733 237 ECAEAVD----SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK----SETQRSLLSMRRAFEGTFIAAGGY--SRDE 306 (367)
Q Consensus 237 ~~~~~~~----~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~----~~~~~~~~~ir~~~~~pvi~~Ggi--t~~~ 306 (367)
+....+. ..+++++.++.+ ..|+|++-++-++.+..+.. .-..+.++.|++.+++|++.=||. ..++
T Consensus 137 ~~~~~~~~~~~~t~peea~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~ 213 (283)
T PRK08185 137 TSIEGGVSEIIYTDPEQAEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAE 213 (283)
T ss_pred cccccccccccCCCHHHHHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHH
Confidence 2111111 124565555543 45999999977765544422 124577899999999998888876 5788
Q ss_pred HHHHHHcCCCcEEcccHHH
Q 017733 307 GNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 307 a~~~L~~G~~D~V~~gR~~ 325 (367)
..++++.| +-=|=+++.+
T Consensus 214 ~~~ai~~G-I~KiNi~T~l 231 (283)
T PRK08185 214 IAESVQLG-VGKINISSDM 231 (283)
T ss_pred HHHHHHCC-CeEEEeChHH
Confidence 99999999 4445555544
No 157
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.84 E-value=0.00044 Score=69.53 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=85.9
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEE-eCCCccccccC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMR-LSPYAECAEAV 242 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vr-ls~~~~~~~~~ 242 (367)
-+..|.++|.|+|-+|+... + .-+.++++.+|+ .|. .+++- +++.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~---------------~----------~~~~~~i~~a~~-~G~-~~~~g~~s~~------- 118 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLAD---------------D----------STIEDAVRAARK-YGV-RLMADLINVP------- 118 (430)
T ss_pred HHHHHHHcCCCEEEEecCCC---------------h----------HHHHHHHHHHHH-cCC-EEEEEecCCC-------
Confidence 45667889999999875320 0 013567777777 343 33332 4541
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEccc
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 322 (367)
.+.+ .++.+.+.|+|||.++.+...+.. .......++.+++.+++||++.||++.+.+.++++.| +|.|.+|
T Consensus 119 --t~~e----~~~~a~~~GaD~I~~~pg~~~~~~-~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aG-Adgv~vG 190 (430)
T PRK07028 119 --DPVK----RAVELEELGVDYINVHVGIDQQML-GKDPLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAG-ADIVIVG 190 (430)
T ss_pred --CHHH----HHHHHHhcCCCEEEEEeccchhhc-CCChHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcC-CCEEEEC
Confidence 1222 345666789999977532211111 1122356788888888999999999999999999999 9999999
Q ss_pred HHHHhCCchH
Q 017733 323 RLFLANPDLP 332 (367)
Q Consensus 323 R~~ladP~l~ 332 (367)
|.++..+++.
T Consensus 191 saI~~~~d~~ 200 (430)
T PRK07028 191 GNIIKSADVT 200 (430)
T ss_pred hHHcCCCCHH
Confidence 9999888753
No 158
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.83 E-value=0.0015 Score=57.62 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=59.8
Q ss_pred HHhhhcCccEEEEecCCcc--ccCC-chhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCch
Q 017733 255 KALNKFKLLYLHVIEPRMI--QLTD-KSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDL 331 (367)
Q Consensus 255 ~~L~~~Gvd~i~v~~~~~~--~~~~-~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l 331 (367)
....+.|+||+.++..... .... .+.....++.+++..+.||++.||++++++.++++.| +|.|++|+.++.+++.
T Consensus 109 ~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~G-a~~i~~g~~i~~~~~~ 187 (196)
T cd00564 109 LRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAG-ADGVAVISAITGADDP 187 (196)
T ss_pred HHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhcCCCH
Confidence 3455679999987422111 1111 2234566777888788999999999999999999999 9999999999988886
Q ss_pred HHHHH
Q 017733 332 PKRFE 336 (367)
Q Consensus 332 ~~k~~ 336 (367)
...++
T Consensus 188 ~~~~~ 192 (196)
T cd00564 188 AAAAR 192 (196)
T ss_pred HHHHH
Confidence 66554
No 159
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.83 E-value=0.0001 Score=68.16 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=69.1
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhC--
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLAN-- 328 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~lad-- 328 (367)
.++++.+++.|++++|+..- +.+ +.+.++.+.+.+++||..+||++.++++++|..| +|-|.++..++.|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aG-a~rVvIGS~av~~~~ 112 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEG-ASHVIVTSWLFTKGK 112 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcC-CCEEEECcHHHhCCC
Confidence 35788899999999999755 333 6778888999999999999999669999999999 9999999999998
Q ss_pred --CchHHHHHhC
Q 017733 329 --PDLPKRFELN 338 (367)
Q Consensus 329 --P~l~~k~~~g 338 (367)
|++.+++.+-
T Consensus 113 i~~~~~~~i~~~ 124 (253)
T TIGR02129 113 FDLKRLKEIVSL 124 (253)
T ss_pred CCHHHHHHHHHH
Confidence 7788888764
No 160
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.82 E-value=0.0011 Score=60.25 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
.++.+.++|+|+|-+...- + . ...+.++++..+. .|-+. .+-++.
T Consensus 86 ~v~~~~~~Gad~v~l~~~~-------~---------------~--~~~~~~~~~~~~~-~g~~~-~v~v~~--------- 130 (217)
T cd00331 86 QIYEARAAGADAVLLIVAA-------L---------------D--DEQLKELYELARE-LGMEV-LVEVHD--------- 130 (217)
T ss_pred HHHHHHHcCCCEEEEeecc-------C---------------C--HHHHHHHHHHHHH-cCCeE-EEEECC---------
Confidence 4777889999999875421 0 0 1344566665543 34222 222222
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF--EGTFIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
.++ ++.+.+.|++++-++..+.... ....+.++.+++.+ +.||++.||+ +++++.++++.| +|.|.
T Consensus 131 ---~~e----~~~~~~~g~~~i~~t~~~~~~~---~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G-a~gvi 199 (217)
T cd00331 131 ---EEE----LERALALGAKIIGINNRDLKTF---EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG-ADAVL 199 (217)
T ss_pred ---HHH----HHHHHHcCCCEEEEeCCCcccc---CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC-CCEEE
Confidence 222 3445668999998874432221 22346677888875 5799999999 799999999998 99999
Q ss_pred ccHHHHhCCchHHHHH
Q 017733 321 FGRLFLANPDLPKRFE 336 (367)
Q Consensus 321 ~gR~~ladP~l~~k~~ 336 (367)
+|++++..++....++
T Consensus 200 vGsai~~~~~p~~~~~ 215 (217)
T cd00331 200 IGESLMRAPDPGAALR 215 (217)
T ss_pred ECHHHcCCCCHHHHHH
Confidence 9999998887665554
No 161
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.82 E-value=0.00081 Score=61.05 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=34.5
Q ss_pred EEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 296 FIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 296 vi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
+.+.||++++++.++++.| +|.|.+|++++.+||....++
T Consensus 173 i~v~GGI~~~nv~~l~~~G-aD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 173 IEVDGGINADNIKECAEAG-ADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred EEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence 5577999999999999988 999999999999998755544
No 162
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.81 E-value=0.00021 Score=70.20 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-
Q 017733 214 EVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF- 292 (367)
Q Consensus 214 eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~- 292 (367)
+-|+.+|+.++ -||.+|=-. +.+ -++.+.+.|+|.|.|++..-.+..........+..+++.+
T Consensus 235 ~di~~lr~~~~-~pvivKgV~-----------s~~----dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~ 298 (381)
T PRK11197 235 KDLEWIRDFWD-GPMVIKGIL-----------DPE----DARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVK 298 (381)
T ss_pred HHHHHHHHhCC-CCEEEEecC-----------CHH----HHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhc
Confidence 44888888874 355554322 233 3445667899999987543222222233345566677665
Q ss_pred -CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 293 -EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 293 -~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
++||++.||| +..+..++|.-| +|+|++||+++.
T Consensus 299 ~~~~vi~dGGIr~g~Di~KALaLG-A~~V~iGr~~l~ 334 (381)
T PRK11197 299 GDITILADSGIRNGLDVVRMIALG-ADTVLLGRAFVY 334 (381)
T ss_pred CCCeEEeeCCcCcHHHHHHHHHcC-cCceeEhHHHHH
Confidence 5899999999 899999999999 999999999985
No 163
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.81 E-value=0.00063 Score=62.59 Aligned_cols=143 Identities=20% Similarity=0.174 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC-c-ceEEEeCCCcc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA-E-RVGMRLSPYAE 237 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~-~-~i~vrls~~~~ 237 (367)
.+...++.+.++|.|+|.+..--+ ... .+...+.+.++++.+.. . ++.+-......
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~--------------~~~--------~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~ 134 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVG--------------SEE--------EREMLEELARVAAEAHKYGLPLIAWMYPRGP 134 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecC--------------Cch--------HHHHHHHHHHHHHHHHHcCCCEEEEEeccCC
Confidence 345566778899999996554221 110 12344555555554421 1 44443222100
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC---CHH----HHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY---SRD----EGNKA 310 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi---t~~----~a~~~ 310 (367)
. .+...+.++....++...+.|+|||-+... ...+.++.+.+..++||++.||+ |++ .+.++
T Consensus 135 ~--~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~---------~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~ 203 (235)
T cd00958 135 A--VKNEKDPDLIAYAARIGAELGADIVKTKYT---------GDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDA 203 (235)
T ss_pred c--ccCccCHHHHHHHHHHHHHHCCCEEEecCC---------CCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHH
Confidence 0 011122333334466677889999987311 13456788888888999888886 454 47888
Q ss_pred HHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 311 VAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
++.| ++.|++||.++..||....++
T Consensus 204 ~~~G-a~gv~vg~~i~~~~dp~~~~~ 228 (235)
T cd00958 204 MEAG-AAGVAVGRNIFQRPDPVAMLR 228 (235)
T ss_pred HHcC-CcEEEechhhhcCCCHHHHHH
Confidence 9998 999999999999998554443
No 164
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.81 E-value=0.0023 Score=60.60 Aligned_cols=190 Identities=12% Similarity=0.068 Sum_probs=115.8
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+..+-+++++.+.++++++|+......- .+...+.+ +.+|.. +...+..
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~------~~~~~~~~~~~~~a~~~~VPVa-----lHLDHg~----------- 85 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKH------IALEEIYALCSAYSTTYNMPLA-----LHLDHHE----------- 85 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhh------CCHHHHHHHHHHHHHHCCCCEE-----EECCCCC-----------
Confidence 46788899999999999999985432110 00000000 011110 0011111
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~ 236 (367)
+ .+.+++|.++||+-|-+.+.+ -+++...+.+.++++..+..-=.- .|| ++...+
T Consensus 86 -~-~e~i~~ai~~GFtSVM~DgS~--------------------lp~eeNi~~T~evv~~Ah~~gv~VEaElG-~igg~e 142 (286)
T PRK12738 86 -S-LDDIRRKVHAGVRSAMIDGSH--------------------FPFAENVKLVKSVVDFCHSQDCSVEAELG-RLGGVE 142 (286)
T ss_pred -C-HHHHHHHHHcCCCeEeecCCC--------------------CCHHHHHHHHHHHHHHHHHcCCeEEEEEE-eeCCcc
Confidence 1 345667778899999987765 136888999999999998852111 233 222222
Q ss_pred ccccc----CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh--hHHHHHHHHHhcCCcEEEeCC--CCHHHHH
Q 017733 237 ECAEA----VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE--TQRSLLSMRRAFEGTFIAAGG--YSRDEGN 308 (367)
Q Consensus 237 ~~~~~----~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~ 308 (367)
+.... .....++++.+|++ +.|+|.+-++-++.+..+...+ +.+.++.|++.+++|++.=|+ +..++..
T Consensus 143 d~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~ 219 (286)
T PRK12738 143 DDMSVDAESAFLTDPQEAKRFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVR 219 (286)
T ss_pred CCcccccchhcCCCHHHHHHHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence 21000 01235677777754 5699999998888766554333 346788999999999776654 5788899
Q ss_pred HHHHcCCCcEEcccHHH
Q 017733 309 KAVAANYTDLVAFGRLF 325 (367)
Q Consensus 309 ~~L~~G~~D~V~~gR~~ 325 (367)
++++.| +-=|=++..+
T Consensus 220 kai~~G-I~KiNi~T~l 235 (286)
T PRK12738 220 RTIELG-VTKVNVATEL 235 (286)
T ss_pred HHHHcC-CeEEEeCcHH
Confidence 999999 4445555544
No 165
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.80 E-value=0.0032 Score=59.58 Aligned_cols=136 Identities=16% Similarity=0.130 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCCcccc-
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPYAECA- 239 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~~~~~- 239 (367)
.+++|.++||+-|-+.+.+ -+++...+.+.++++..+.. |-. .|| ++...++..
T Consensus 92 ~i~~ai~~GftSVM~DgS~--------------------lp~eeNi~~Trevv~~Ah~~-gv~VEaElG-~igg~ed~~~ 149 (285)
T PRK07709 92 KCKEAIDAGFTSVMIDASH--------------------HPFEENVETTKKVVEYAHAR-NVSVEAELG-TVGGQEDDVI 149 (285)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEe-ccCCccCCcc
Confidence 3447778899999887765 24677899999999998865 211 233 222222210
Q ss_pred -ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh--hHHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHHcC
Q 017733 240 -EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE--TQRSLLSMRRAFEGTFIAAGG--YSRDEGNKAVAAN 314 (367)
Q Consensus 240 -~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L~~G 314 (367)
+.....+++++.+|++ +.|+|++-++-++.+..+...+ +.+.++.|++.+++|++.=|+ +..++..++++.|
T Consensus 150 ~~~~~yT~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~G 226 (285)
T PRK07709 150 AEGVIYADPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLG 226 (285)
T ss_pred cccccCCCHHHHHHHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 1011335677777765 4699999998888665553323 346688899999999776665 5788999999999
Q ss_pred CCcEEcccHHH
Q 017733 315 YTDLVAFGRLF 325 (367)
Q Consensus 315 ~~D~V~~gR~~ 325 (367)
+-=|=++..+
T Consensus 227 -i~KiNi~T~l 236 (285)
T PRK07709 227 -TSKINVNTEN 236 (285)
T ss_pred -CeEEEeChHH
Confidence 4445555554
No 166
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.80 E-value=0.00056 Score=64.33 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC--cceEEEeCCCcc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA--ERVGMRLSPYAE 237 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~--~~i~vrls~~~~ 237 (367)
.+...++.|.+.|.|+|.+..-.| .+. + +-..+.+.+|++.+.. -++.+=..+.
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g--------------~~~-----~---~~~~~~~~~v~~~~~~~g~pl~vi~~~~-- 149 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVG--------------SET-----E---AEMLEDLGEVAEECEEWGMPLLAMMYPR-- 149 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecC--------------Chh-----H---HHHHHHHHHHHHHHHHcCCcEEEEEecC--
Confidence 345567788999999999875332 110 1 1235556666665531 1433311111
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCC---HHHHH----HH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYS---RDEGN----KA 310 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit---~~~a~----~~ 310 (367)
........+.++....++...+.|+|||-.+ +. .....++.+.+..++||++.||++ .+++. ++
T Consensus 150 g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---~~------~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~ 220 (267)
T PRK07226 150 GPGIKNEYDPEVVAHAARVAAELGADIVKTN---YT------GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDA 220 (267)
T ss_pred CCccCCCccHHHHHHHHHHHHHHCCCEEeeC---CC------CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1001111233444555677778999999754 11 123556667776789999999994 44544 44
Q ss_pred HHcCCCcEEcccHHHHhCCchHH
Q 017733 311 VAANYTDLVAFGRLFLANPDLPK 333 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~ 333 (367)
++.| ++.++++|.++..|+...
T Consensus 221 ~~aG-A~Gis~gr~i~~~~~p~~ 242 (267)
T PRK07226 221 MEAG-AAGVAVGRNVFQHEDPEA 242 (267)
T ss_pred HHcC-CcEEehhhhhhcCCCHHH
Confidence 5888 899999999999988433
No 167
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.79 E-value=0.00087 Score=59.18 Aligned_cols=130 Identities=20% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCChHHHHHHHHHHHHHH-------------HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHH
Q 017733 148 PLSIEEIPKIVNDFRLAA-------------RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALE 214 (367)
Q Consensus 148 ~mt~~eI~~ii~~f~~aA-------------~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~e 214 (367)
.++.+++.++++.+.+.+ ..|.+.|+|||-+.... +
T Consensus 35 ~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~~~------------------------------~- 83 (180)
T PF02581_consen 35 DLSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQSD------------------------------L- 83 (180)
T ss_dssp SS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBTTS------------------------------S-
T ss_pred CCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecccc------------------------------c-
Confidence 356677777766665444 44567888887764311 0
Q ss_pred HHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCc--cccCCchhhHHHHHHHHHh
Q 017733 215 VVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRM--IQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 215 ii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~--~~~~~~~~~~~~~~~ir~~ 291 (367)
-...+|+..+++ .|++ |.. +.++ ++.+.+.|+||+-++.-.. +.+...+.....++.+++.
T Consensus 84 ~~~~~r~~~~~~~~ig~--S~h----------~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~ 147 (180)
T PF02581_consen 84 PPAEARKLLGPDKIIGA--SCH----------SLEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA 147 (180)
T ss_dssp SHHHHHHHHTTTSEEEE--EES----------SHHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH
T ss_pred chHHhhhhcccceEEEe--ecC----------cHHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHh
Confidence 134566767766 5665 332 1333 4455678999998864221 1222233345677889999
Q ss_pred cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHH
Q 017733 292 FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 292 ~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
.++||++-||+++++..++++.| +|+|++.|+.
T Consensus 148 ~~~pv~AlGGI~~~~i~~l~~~G-a~gvAvi~aI 180 (180)
T PF02581_consen 148 SPIPVYALGGITPENIPELREAG-ADGVAVISAI 180 (180)
T ss_dssp TSSCEEEESS--TTTHHHHHHTT--SEEEESHHH
T ss_pred CCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEeeC
Confidence 99999999999999999999999 9999998763
No 168
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=97.79 E-value=0.00076 Score=65.26 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=82.8
Q ss_pred hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHH
Q 017733 171 AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEAL 249 (367)
Q Consensus 171 aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~ 249 (367)
.||..++|..|. .|.++ +--.+.|++||+++|++ .|.+.-|. ..+.++
T Consensus 101 ~G~~~~KvKVg~------------------~~~~~----~~Di~rv~avRe~lGpd~~LrvDAN~---------~ws~~~ 149 (327)
T PRK02901 101 PGCRTAKVKVAE------------------PGQTL----ADDVARVNAVRDALGPDGRVRVDANG---------GWSVDE 149 (327)
T ss_pred CCCCEEEEEECC------------------CCCCH----HHHHHHHHHHHHhcCCCCEEEEECCC---------CCCHHH
Confidence 599999998763 12222 33578999999999975 35554443 346788
Q ss_pred HHHHHHHh-hhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 250 GLYMAKAL-NKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 250 ~~~l~~~L-~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
+..+++.| ++.++.|++ ++.. ....+..+++.+++||.+...+ +.++..++++.+.+|++.+
T Consensus 150 Ai~~~~~L~e~~~l~~iE--qP~~--------~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 150 AVAAARALDADGPLEYVE--QPCA--------TVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred HHHHHHHhhhccCceEEe--cCCC--------CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 99999999 778999988 4421 1355677999999999888887 8999999999999998744
No 169
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.79 E-value=0.0016 Score=61.65 Aligned_cols=190 Identities=12% Similarity=0.077 Sum_probs=117.8
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+.++-++++..+.++++++|+...... + .+...+++ +.+|.. +...+. .+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~----~--~g~~~~~~~~~~~A~~~~VPV~-----lHLDHg--~~-------- 86 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFS----Y--AGTEYLLAIVSAAAKQYHHPLA-----LHLDHH--EK-------- 86 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHh----h--CCHHHHHHHHHHHHHHCCCCEE-----EECCCC--CC--------
Confidence 4678889999999999999999653211 0 01101111 011110 001111 12
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~ 235 (367)
.+..++|.++||+-|-+.+.+ -+++...+.+.++++-.+.. |-. .|| ++...
T Consensus 87 ---~e~i~~Ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vv~~Ah~~-gv~VEaElG-~vgg~ 141 (284)
T PRK09195 87 ---FDDIAQKVRSGVRSVMIDGSH--------------------LPFAQNISLVKEVVDFCHRF-DVSVEAELG-RLGGQ 141 (284)
T ss_pred ---HHHHHHHHHcCCCEEEeCCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEe-cccCc
Confidence 144667778999999987755 24788899999999999875 211 233 22222
Q ss_pred ccc-c-c--cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh--hHHHHHHHHHhcCCcEEEeC--CCCHHHH
Q 017733 236 AEC-A-E--AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE--TQRSLLSMRRAFEGTFIAAG--GYSRDEG 307 (367)
Q Consensus 236 ~~~-~-~--~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~G--git~~~a 307 (367)
++. . + .....+++++.+|++ +.|||++-++-++.+..+...+ +.+.++.|++.+++|++.=| |+..++.
T Consensus 142 e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~ 218 (284)
T PRK09195 142 EDDLQVDEADALYTDPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDI 218 (284)
T ss_pred ccCcccccccccCCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHH
Confidence 221 0 0 011235677777765 5799999998888665553323 34678899999999976555 4678899
Q ss_pred HHHHHcCCCcEEcccHHHH
Q 017733 308 NKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 308 ~~~L~~G~~D~V~~gR~~l 326 (367)
.++++.| +-=|=+++.+.
T Consensus 219 ~~ai~~G-i~KiNi~T~l~ 236 (284)
T PRK09195 219 QQTIKLG-ICKVNVATELK 236 (284)
T ss_pred HHHHHcC-CeEEEeCcHHH
Confidence 9999999 55566666654
No 170
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.78 E-value=0.0001 Score=67.77 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=69.8
Q ss_pred HHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 252 YMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 252 ~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
++++.+++.|++.+|+..-+.. ....+.+...++.+.+.+..||...||+ +.+++++++..| +|-|.++..++.||+
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G-a~~Vvigt~~~~~~~ 110 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAG-ADRVVIGTEALEDPE 110 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT--SEEEESHHHHHCCH
T ss_pred HHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhC-CCEEEeChHHhhchh
Confidence 4777888999999998753221 1234556778899999999999999999 899999999999 999999999999999
Q ss_pred hHHHHHhC
Q 017733 331 LPKRFELN 338 (367)
Q Consensus 331 l~~k~~~g 338 (367)
+..++.+.
T Consensus 111 ~l~~~~~~ 118 (229)
T PF00977_consen 111 LLEELAER 118 (229)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998863
No 171
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.78 E-value=0.00089 Score=64.07 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHh--CCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcc
Q 017733 160 DFRLAARNAIEA--GFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAE 237 (367)
Q Consensus 160 ~f~~aA~~a~~a--GfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~ 237 (367)
+|.+. +.+.++ |.|.|-|..+||| .+..++.|+.||+..+. ...|+=|.
T Consensus 108 d~er~-~~L~~a~~~~d~iviD~AhGh------------------------s~~~i~~ik~ir~~~p~-~~viaGNV--- 158 (343)
T TIGR01305 108 DLEKM-TSILEAVPQLKFICLDVANGY------------------------SEHFVEFVKLVREAFPE-HTIMAGNV--- 158 (343)
T ss_pred HHHHH-HHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHhhCCC-CeEEEecc---
Confidence 34444 444455 6999999999984 35679999999999864 33332222
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCC---ccc---cCCchhhHHHHHHHHHhc---CCcEEEeCCC-CHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQ---LTDKSETQRSLLSMRRAF---EGTFIAAGGY-SRDEG 307 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~---~~~~~~~~~~~~~ir~~~---~~pvi~~Ggi-t~~~a 307 (367)
.+.+ -++.|.++|+|.|-|.-+. +.. .....+....+..+.++. ++|||+-||+ +.-+.
T Consensus 159 -------~T~e----~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI 227 (343)
T TIGR01305 159 -------VTGE----MVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDV 227 (343)
T ss_pred -------cCHH----HHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHH
Confidence 1233 4456677999998776331 111 111223455555555543 5789999999 78999
Q ss_pred HHHHHcCCCcEEcccHHHHhCCchHH
Q 017733 308 NKAVAANYTDLVAFGRLFLANPDLPK 333 (367)
Q Consensus 308 ~~~L~~G~~D~V~~gR~~ladP~l~~ 333 (367)
-++|+.| +|+||+|.-+..-.+=|-
T Consensus 228 ~KALA~G-Ad~VMlG~llAG~~Espg 252 (343)
T TIGR01305 228 AKAFGAG-ADFVMLGGMFAGHTESGG 252 (343)
T ss_pred HHHHHcC-CCEEEECHhhhCcCcCcc
Confidence 9999999 999999955544433333
No 172
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.76 E-value=0.00015 Score=67.37 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=69.7
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhC--
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLAN-- 328 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~lad-- 328 (367)
.++++.+.+.|+.++|+..-.. ..+.+...++.|++ +++||-.+||++.++++.+|..| +|-|.++..++.|
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~G-a~rViigT~Av~~~~ 119 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAG-ASHVIVTSYVFRDGQ 119 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcC-CCEEEEchHHHhCCC
Confidence 4588899999999999975532 33445667888888 88999999999669999999999 9999999999999
Q ss_pred --CchHHHHHhC
Q 017733 329 --PDLPKRFELN 338 (367)
Q Consensus 329 --P~l~~k~~~g 338 (367)
|+|++++.+-
T Consensus 120 ~~p~~v~~~~~~ 131 (262)
T PLN02446 120 IDLERLKDLVRL 131 (262)
T ss_pred CCHHHHHHHHHH
Confidence 9999998763
No 173
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.76 E-value=0.00014 Score=67.08 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=70.6
Q ss_pred HHHHHhhh-cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 252 YMAKALNK-FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 252 ~l~~~L~~-~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
++++.+.+ .|+|.+|+..-+... .....+.+.++.+.+.+.+||...||+ |.+++++++..| +|-|.++...+.||
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~G-a~kvvigt~a~~~~ 112 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAG-INYCIVGTKGIQDT 112 (234)
T ss_pred HHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCC-CCEEEECchHhcCH
Confidence 37777887 699999997543321 133456778888998889999999999 899999999999 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
++.+++.+-
T Consensus 113 ~~l~~~~~~ 121 (234)
T PRK13587 113 DWLKEMAHT 121 (234)
T ss_pred HHHHHHHHH
Confidence 999998764
No 174
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.76 E-value=0.00046 Score=70.45 Aligned_cols=131 Identities=19% Similarity=0.149 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+.++.+.++|.|.|-+.++||. ..-..+.++.+|+..++-+|.+.-
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~------------------------~~~vl~~i~~i~~~~p~~~vi~g~--------- 276 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH------------------------SEGVLDRVREIKAKYPDVQIIAGN--------- 276 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc------------------------chhHHHHHHHHHhhCCCCCEEEec---------
Confidence 57788888999999988887752 123578899999988544555511
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCc---cc---cCCchhhHHHHHHHHHh---cCCcEEEeCCC-CHHHHHHHH
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRM---IQ---LTDKSETQRSLLSMRRA---FEGTFIAAGGY-SRDEGNKAV 311 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~---~~---~~~~~~~~~~~~~ir~~---~~~pvi~~Ggi-t~~~a~~~L 311 (367)
-.+.+ -++.|.++|+|+|.+..+.. .. .....+....+..+++. .++|||+.||+ ++.++.++|
T Consensus 277 --v~t~e----~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAl 350 (486)
T PRK05567 277 --VATAE----AARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKAL 350 (486)
T ss_pred --cCCHH----HHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHH
Confidence 12334 34456678999998732211 00 11122344555555553 46899999999 899999999
Q ss_pred HcCCCcEEcccHHHHhCCchH
Q 017733 312 AANYTDLVAFGRLFLANPDLP 332 (367)
Q Consensus 312 ~~G~~D~V~~gR~~ladP~l~ 332 (367)
+.| +|+|++|..+..--+-|
T Consensus 351 a~G-A~~v~~G~~~a~~~e~p 370 (486)
T PRK05567 351 AAG-ASAVMLGSMLAGTEEAP 370 (486)
T ss_pred HhC-CCEEEECccccccccCC
Confidence 999 99999999886654433
No 175
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.74 E-value=0.00025 Score=65.22 Aligned_cols=85 Identities=11% Similarity=0.173 Sum_probs=68.9
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+.+.|++++|+..-+... ....+.+.++++.+....|+...||+ |.+++++++..| +|-|.++..++.||
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~G-a~kvvigt~a~~~p 109 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLD-VNALVFSTIVFTNF 109 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCC-CCEEEECchhhCCH
Confidence 347788888999999997554321 33445677888887544599999999 899999999999 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
++.+++.+.
T Consensus 110 ~~~~~~~~~ 118 (232)
T PRK13586 110 NLFHDIVRE 118 (232)
T ss_pred HHHHHHHHH
Confidence 999998754
No 176
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.73 E-value=0.0035 Score=59.29 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=114.8
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCcc--CCCCCCCCCCCCc---ccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRV--SNYGLQPNGEAPI---SSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~--~~~~~~~~~~~~~---~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
.+.++-+++++.+.++++++|+...... +.......-...+ +...+|.. +...+. .+
T Consensus 28 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~-----lHLDHg--~~----------- 89 (286)
T PRK08610 28 LEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVA-----IHLDHG--SS----------- 89 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEE-----EECCCC--CC-----------
Confidence 4577888999999999999999653221 1000000000000 00001110 001111 12
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCCccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPYAEC 238 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~~~~ 238 (367)
.+.+++|.++||+-|-+.+.+ -+++...+.+.++++..+.. |-. .|| ++...++.
T Consensus 90 ~e~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~~-gv~VEaElG-~vgg~ed~ 147 (286)
T PRK08610 90 FEKCKEAIDAGFTSVMIDASH--------------------SPFEENVATTKKVVEYAHEK-GVSVEAELG-TVGGQEDD 147 (286)
T ss_pred HHHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEe-ccCCccCC
Confidence 223356788999999988765 14778899999999988854 211 233 22222221
Q ss_pred c--ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh--hHHHHHHHHHhcCCcEEEeCC--CCHHHHHHHHH
Q 017733 239 A--EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE--TQRSLLSMRRAFEGTFIAAGG--YSRDEGNKAVA 312 (367)
Q Consensus 239 ~--~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~L~ 312 (367)
. +.....+++++.+|++ +.|||++-++-++.+..+...+ +.+.++.|++.+++|++.=|+ +..++..++++
T Consensus 148 ~~~~~~~yT~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~ 224 (286)
T PRK08610 148 VVADGIIYADPKECQELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIP 224 (286)
T ss_pred CCCcccccCCHHHHHHHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHH
Confidence 1 1011335677777764 6799999998888766554333 346788999999999776665 56789999999
Q ss_pred cCCCcEEcccHH
Q 017733 313 ANYTDLVAFGRL 324 (367)
Q Consensus 313 ~G~~D~V~~gR~ 324 (367)
.|. -=|=++..
T Consensus 225 ~GI-~KiNi~T~ 235 (286)
T PRK08610 225 FGT-AKINVNTE 235 (286)
T ss_pred CCC-eEEEeccH
Confidence 994 33444444
No 177
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.73 E-value=0.0033 Score=59.40 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=117.0
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+..+-++++..+.++++++|+...... + .+...+.+ +.+|.. +...+.. +
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~~~----~--~~~~~~~~~~~~~a~~~~VPVa-----lHLDHg~--~-------- 84 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGTFK----H--AGTEYIVALCSAASTTYNMPLA-----LHLDHHE--S-------- 84 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccHHh----h--CCHHHHHHHHHHHHHHCCCCEE-----EECCCCC--C--------
Confidence 4677889999999999999999653221 0 00000100 011110 0011111 1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~ 235 (367)
.+.+++|.++||+-|-+.+.+ -+++...+.+.++++..+.. |-. .|| .+...
T Consensus 85 ---~e~i~~ai~~GFtSVM~DgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv~VEaElG-~vgg~ 139 (282)
T TIGR01858 85 ---LDDIRQKVHAGVRSAMIDGSH--------------------FPFAQNVKLVKEVVDFCHRQ-DCSVEAELG-RLGGV 139 (282)
T ss_pred ---HHHHHHHHHcCCCEEeecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEE-ecCCc
Confidence 134578888999999988765 13678899999999988875 211 233 12222
Q ss_pred ccc-c--c-cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh--hHHHHHHHHHhcCCcEEEeCC--CCHHHH
Q 017733 236 AEC-A--E-AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE--TQRSLLSMRRAFEGTFIAAGG--YSRDEG 307 (367)
Q Consensus 236 ~~~-~--~-~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a 307 (367)
++. . + ......++++.+|++ +.|+|++-++-++.+..+...+ +.+.++.|++.+++|++.=|+ ++.++.
T Consensus 140 e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~ 216 (282)
T TIGR01858 140 EDDLSVDEEDALYTDPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDV 216 (282)
T ss_pred cCCCccccchhccCCHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHH
Confidence 221 0 0 011234577777754 6799999998888665554433 346789999999999766554 578899
Q ss_pred HHHHHcCCCcEEcccHHHH
Q 017733 308 NKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 308 ~~~L~~G~~D~V~~gR~~l 326 (367)
.++++.| +-=|=++..+.
T Consensus 217 ~~ai~~G-i~KiNi~T~l~ 234 (282)
T TIGR01858 217 RRTIELG-ICKVNVATELK 234 (282)
T ss_pred HHHHHcC-CeEEEeCcHHH
Confidence 9999999 44566665554
No 178
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.69 E-value=0.00023 Score=66.64 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=71.8
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..++++.+.+.|++.+++..-..... ....+...++.+.+.+..||+++||+ +.+++++++..| +|.|.+++.++.+
T Consensus 32 p~~~a~~~~~~g~~~l~i~Dl~~~~~-~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G-~~~vvigs~~~~~ 109 (258)
T PRK01033 32 PINAVRIFNEKEVDELIVLDIDASKR-GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLG-VEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcC-CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCC-CCEEEEChHHhcC
Confidence 34688999999999999875432211 23346778888988889999999999 899999999888 9999999999999
Q ss_pred CchHHHHHhC
Q 017733 329 PDLPKRFELN 338 (367)
Q Consensus 329 P~l~~k~~~g 338 (367)
|++..++.+.
T Consensus 110 ~~~~~~~~~~ 119 (258)
T PRK01033 110 PDLITEAAER 119 (258)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 179
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.63 E-value=0.0017 Score=60.58 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhh----------HhHHHHHHHHHHHHHhCCcce
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLEN----------RCRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~en----------r~r~~~eii~aiR~~vg~~~i 228 (367)
+.+.+.++.+.++|.|.|||-. |.++--.| |..+++ ..+-++++++++|+.-...||
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGi-----------PfSDP~AD--GpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pi 90 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGI-----------PFSDPVAD--GPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPI 90 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE-------------SSSCTTS--SHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEE
T ss_pred HHHHHHHHHHHHcCCCEEEECC-----------CCCCCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCE
Confidence 6788899999999999999966 55555555 333332 245578899999955443343
Q ss_pred EEEe--CCC-----ccc---------ccc-CCCChHHHHHHHHHHhhhcCccEEEEecCCccc-----------------
Q 017733 229 GMRL--SPY-----AEC---------AEA-VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ----------------- 274 (367)
Q Consensus 229 ~vrl--s~~-----~~~---------~~~-~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~----------------- 274 (367)
.+-. |+. +.| ++. .-+.+.|+...+.+.+.+.|++.|.+..++...
T Consensus 91 vlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 91 VLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp EEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred EEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 3211 110 001 000 123456666777777788888888776542111
Q ss_pred -----cCCc----hhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 275 -----LTDK----SETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 275 -----~~~~----~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
++.. ....+.++.+|+..+.||+++=|+ ++++++++. .+ +|.|.+|.+++.
T Consensus 171 s~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~-aDGvIVGSa~v~ 231 (259)
T PF00290_consen 171 SRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG-ADGVIVGSAFVK 231 (259)
T ss_dssp SSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT-SSEEEESHHHHH
T ss_pred ccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc-CCEEEECHHHHH
Confidence 0001 112457888999999999888788 899999999 65 999999998764
No 180
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.61 E-value=0.0017 Score=59.53 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc
Q 017733 213 LEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF 292 (367)
Q Consensus 213 ~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~ 292 (367)
.|.+++.+..+.+.+... |+. ..|+ .+|++|++.|+..+---..... ....-.+.+.++.|++..
T Consensus 124 ~etl~Aae~Lv~eGF~Vl---PY~------~~D~-----v~a~rLed~Gc~aVMPlgsPIG-Sg~Gl~n~~~l~~i~e~~ 188 (267)
T CHL00162 124 IGTLKAAEFLVKKGFTVL---PYI------NADP-----MLAKHLEDIGCATVMPLGSPIG-SGQGLQNLLNLQIIIENA 188 (267)
T ss_pred HHHHHHHHHHHHCCCEEe---ecC------CCCH-----HHHHHHHHcCCeEEeeccCccc-CCCCCCCHHHHHHHHHcC
Confidence 889999999997643222 321 1222 4899999999887653222111 112234667899999999
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHH
Q 017733 293 EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPK 333 (367)
Q Consensus 293 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~ 333 (367)
++||+...|| +++++.++++-| +|.|.++.+...-+|...
T Consensus 189 ~vpVivdAGIgt~sDa~~AmElG-aDgVL~nSaIakA~dP~~ 229 (267)
T CHL00162 189 KIPVIIDAGIGTPSEASQAMELG-ASGVLLNTAVAQAKNPEQ 229 (267)
T ss_pred CCcEEEeCCcCCHHHHHHHHHcC-CCEEeecceeecCCCHHH
Confidence 9999999999 899999999999 999999999987766543
No 181
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00026 Score=64.67 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=72.7
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.+.++.+.+.|+.++|+..-+-- ..+.+.+...++++.+.++.||-.+||| |.++++.+|+.| ++.|.+|...+.||
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA-~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G-~~rViiGt~av~~p 111 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA-KAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAG-VARVIIGTAAVKNP 111 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc-ccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCC-CCEEEEecceecCH
Confidence 35777888899999998654311 1134556788999999999999999999 899999999999 99999999999999
Q ss_pred chHHHHHhCC
Q 017733 330 DLPKRFELNA 339 (367)
Q Consensus 330 ~l~~k~~~g~ 339 (367)
+|+.++.+--
T Consensus 112 ~~v~~~~~~~ 121 (241)
T COG0106 112 DLVKELCEEY 121 (241)
T ss_pred HHHHHHHHHc
Confidence 9999997643
No 182
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.61 E-value=0.013 Score=55.31 Aligned_cols=191 Identities=19% Similarity=0.130 Sum_probs=116.1
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+..+-+++++.+.++++++|+...... + .+...+.+ +.+|.. +... |..+.
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~~~~----~--~g~~~~~~~~~~~A~~~~vPV~-----lHLD--H~~~~------- 87 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPTNAQ----L--SGYDYIYEIVKRHADKMDVPVS-----LHLD--HGKTF------- 87 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHhHHh----h--CCHHHHHHHHHHHHHHCCCCEE-----EECc--CCCCH-------
Confidence 4678889999999999999999542211 0 01111111 111110 0001 12222
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEE---eCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMR---LSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vr---ls~~ 235 (367)
+.+++|.++||+.|-+.+.+ -+++...+.+.++++..+.. |- .|-.- +...
T Consensus 88 ----e~i~~Ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~~-gv-~VEaElG~vgg~ 141 (283)
T PRK07998 88 ----EDVKQAVRAGFTSVMIDGAA--------------------LPFEENIAFTKEAVDFAKSY-GV-PVEAELGAILGK 141 (283)
T ss_pred ----HHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEEeccCCCc
Confidence 23346678899999987644 14677788899999988873 32 22122 2221
Q ss_pred cccc--ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCch-hhHHHHHHHHHhcCCcEEEeCC--CCHHHHHHH
Q 017733 236 AECA--EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKS-ETQRSLLSMRRAFEGTFIAAGG--YSRDEGNKA 310 (367)
Q Consensus 236 ~~~~--~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~-~~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~ 310 (367)
++.. +......++++.+|++ +.|+|++-++-++.+..+..+ -+.+.++.|++.+++|++.=|+ ++.++..++
T Consensus 142 ed~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~a 218 (283)
T PRK07998 142 EDDHVSEADCKTEPEKVKDFVE---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSF 218 (283)
T ss_pred cccccccccccCCHHHHHHHHH---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHH
Confidence 2110 0011234566666654 569999999888766555432 2346789999999999776665 578899999
Q ss_pred HHcCCCcEEcccHHHHh
Q 017733 311 VAANYTDLVAFGRLFLA 327 (367)
Q Consensus 311 L~~G~~D~V~~gR~~la 327 (367)
++.| +-=|-+++.+..
T Consensus 219 i~~G-i~KiNi~Tel~~ 234 (283)
T PRK07998 219 VNYK-VAKVNIASDLRK 234 (283)
T ss_pred HHcC-CcEEEECHHHHH
Confidence 9999 667888877643
No 183
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.60 E-value=0.00034 Score=64.75 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=69.0
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+.+.|++++|+..-+.. ....+.+.+.++.|.+.+ .||...||+ |.++++.++..| +|-|.++..++.||
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~G-a~rvvigT~a~~~p 109 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLG-YRRQIVSSKVLEDP 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCC-CCEEEECchhhCCH
Confidence 35788888999999999754321 123345667788888877 799999999 899999999999 99999999999999
Q ss_pred chHHHHHh
Q 017733 330 DLPKRFEL 337 (367)
Q Consensus 330 ~l~~k~~~ 337 (367)
++.+++.+
T Consensus 110 ~~l~~~~~ 117 (241)
T PRK14114 110 SFLKFLKE 117 (241)
T ss_pred HHHHHHHH
Confidence 99999853
No 184
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.59 E-value=0.0003 Score=64.57 Aligned_cols=83 Identities=12% Similarity=0.177 Sum_probs=66.5
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+.+. ++.+++...... ....+.+.+.++.+.+.+..||+++||+ |.+++++++..| +|.|.+|+.++ ||
T Consensus 33 ~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G-~~~vivGtaa~-~~ 108 (228)
T PRK04128 33 VEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIG-VENVIIGTKAF-DL 108 (228)
T ss_pred HHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchhc-CH
Confidence 3467777776 888888544321 1133346778888988899999999999 899999999998 99999999999 99
Q ss_pred chHHHHHh
Q 017733 330 DLPKRFEL 337 (367)
Q Consensus 330 ~l~~k~~~ 337 (367)
++.+++.+
T Consensus 109 ~~l~~~~~ 116 (228)
T PRK04128 109 EFLEKVTS 116 (228)
T ss_pred HHHHHHHH
Confidence 99999875
No 185
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.58 E-value=0.0024 Score=58.91 Aligned_cols=136 Identities=9% Similarity=0.003 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~ 240 (367)
.+.++++.++|++-|-|...- .+. .++++++.++.|.. .+++..........
T Consensus 88 ~e~v~~~l~~Ga~kvvigt~a-----------------------~~~----~~~l~~~~~~fg~~ivvslD~~~g~v~~~ 140 (234)
T PRK13587 88 KSQIMDYFAAGINYCIVGTKG-----------------------IQD----TDWLKEMAHTFPGRIYLSVDAYGEDIKVN 140 (234)
T ss_pred HHHHHHHHHCCCCEEEECchH-----------------------hcC----HHHHHHHHHHcCCCEEEEEEeeCCEEEec
Confidence 455677777999999765422 111 45666666777744 35555432111110
Q ss_pred cCC-CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 241 AVD-SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 241 ~~~-~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
++ ..+.-+..++++.+++.|+..+-++.-...... ..++...++.+.+.+++||+++||+ ++++..++++.| +|.
T Consensus 141 -gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~-~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~ 217 (234)
T PRK13587 141 -GWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKM-SGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN-VHA 217 (234)
T ss_pred -CCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCC-CccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCE
Confidence 11 111112356888888888775544332221111 2245677888888889999999999 899999999988 999
Q ss_pred EcccHHHHh
Q 017733 319 VAFGRLFLA 327 (367)
Q Consensus 319 V~~gR~~la 327 (367)
|.+|+.+..
T Consensus 218 vivG~a~~~ 226 (234)
T PRK13587 218 AIIGKAAHQ 226 (234)
T ss_pred EEEhHHHHh
Confidence 999999886
No 186
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=97.57 E-value=0.00076 Score=61.81 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 213 LEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 213 ~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
.+.|+++|+++|++ .+.+..|. ..+.+++.++++.|++.++.|++ +|. .+.+....+.+++.
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~---------~~~~~~a~~~~~~l~~~~i~~iE--eP~------~~~d~~~~~~L~~~ 143 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANG---------AWTPKEAIRLIRALEKYGLAWIE--EPC------APDDLEGYAALRRR 143 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCC---------CCCHHHHHHHHHHhhhcCCCeEE--CCC------CccCHHHHHHHHhh
Confidence 89999999999976 56666654 23578899999999999999988 442 11234567789999
Q ss_pred cCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 292 FEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 292 ~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
.++||.+...+ ++++..++++.+.+|++.+
T Consensus 144 ~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 144 TGIPIAADESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence 99999886666 7999989999999998865
No 187
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.56 E-value=0.0012 Score=64.86 Aligned_cols=139 Identities=19% Similarity=0.100 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
++.+-++.+.++|.|.|.+|+ +.|...|+++--+ . .++++.+++ .+ -+|.. .+
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhg--------------rt~~~~h~~~~~~-~---~~i~~~ik~-~~-ipVIa---G~---- 194 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQG--------------TVVSAEHVSKEGE-P---LNLKEFIYE-LD-VPVIV---GG---- 194 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEec--------------cchhhhccCCcCC-H---HHHHHHHHH-CC-CCEEE---eC----
Confidence 456777888899999999986 2445566654211 2 334444444 32 24433 10
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCC---cccc---CCchhhHHHHHHHHHh-------c---CCcEEEeCCC-
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQL---TDKSETQRSLLSMRRA-------F---EGTFIAAGGY- 302 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~~---~~~~~~~~~~~~ir~~-------~---~~pvi~~Ggi- 302 (367)
-.+.+ .++.+.++|+|.|-+..+. +... ....+....+..+.+. + ++|||+.|||
T Consensus 195 ----V~t~e----~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~ 266 (368)
T PRK08649 195 ----CVTYT----TALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG 266 (368)
T ss_pred ----CCCHH----HHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC
Confidence 11233 3344556899999764221 1110 0012222222222211 1 5899999999
Q ss_pred CHHHHHHHHHcCCCcEEcccHHHHhCCchHHH
Q 017733 303 SRDEGNKAVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 303 t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
+..++.++|+.| +|.|+||+.|+.-.+-+-+
T Consensus 267 ~~~diakAlalG-Ad~Vm~Gs~fa~t~Espg~ 297 (368)
T PRK08649 267 TSGDIAKAIACG-ADAVMLGSPLARAAEAPGR 297 (368)
T ss_pred CHHHHHHHHHcC-CCeecccchhcccccCCCc
Confidence 899999999999 9999999999986664433
No 188
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.54 E-value=0.0097 Score=56.47 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=90.1
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCCccc-
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPYAEC- 238 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~~~~- 238 (367)
+..++|.++||+-|-+.+.+ -+++...+.+.++++-.+.. |-. .||. +...++.
T Consensus 91 e~i~~ai~~GftSVMiDgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv~VEaElG~-vgg~e~~~ 148 (288)
T TIGR00167 91 EDCAQAVKAGFSSVMIDGSH--------------------EPFEENIELTKKVVERAHKM-GVSVEAELGT-LGGEEDGV 148 (288)
T ss_pred HHHHHHHHcCCCEEEecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEee-ccCccCCc
Confidence 34566778888888887655 24677889999999988765 211 2331 2222211
Q ss_pred --c-ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc-h--hhHHHHHHHHHhcCCcEEEeCC--CCHHHHHHH
Q 017733 239 --A-EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK-S--ETQRSLLSMRRAFEGTFIAAGG--YSRDEGNKA 310 (367)
Q Consensus 239 --~-~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~-~--~~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~~ 310 (367)
. +......++++.+|+ ++.|+|.+-++-++.+..+.. + -+.+.++.|++.+++|++.=|+ +..++..++
T Consensus 149 ~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~a 225 (288)
T TIGR00167 149 SVADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKA 225 (288)
T ss_pred ccccccccCCCHHHHHHHH---hccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 0 001123456676665 457999999988886655532 2 3556789999999999776654 578899999
Q ss_pred HHcCCCcEEcccHHH
Q 017733 311 VAANYTDLVAFGRLF 325 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ 325 (367)
++.| +-=|=+++.+
T Consensus 226 i~~G-i~KiNi~T~l 239 (288)
T TIGR00167 226 ISLG-VVKVNIDTEL 239 (288)
T ss_pred HHcC-CeEEEcChHH
Confidence 9999 4446666554
No 189
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.53 E-value=0.00065 Score=61.74 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR 323 (367)
..+++...+...+..|+-++.+. ++. ...+...++.+++.+ +.|++.+||+ |+++++++++.| +|.|.+|.
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe---~SG---~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs 205 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE---YSG---AYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG-ADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC---CCC---CcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECc
Confidence 35566667766777775555543 111 113567889999998 8999999999 899999999989 99999999
Q ss_pred HHHhCCchHHHHH
Q 017733 324 LFLANPDLPKRFE 336 (367)
Q Consensus 324 ~~ladP~l~~k~~ 336 (367)
.+..||++..++.
T Consensus 206 ai~~~p~~~~~~v 218 (219)
T cd02812 206 IVEEDPNAALETV 218 (219)
T ss_pred hhhCCHHHHHHHh
Confidence 9999999988764
No 190
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.52 E-value=0.0092 Score=53.15 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=55.6
Q ss_pred HhhhcCccEEEEecCCccccCC---chhhHHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCch
Q 017733 256 ALNKFKLLYLHVIEPRMIQLTD---KSETQRSLLSMRRAF-EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDL 331 (367)
Q Consensus 256 ~L~~~Gvd~i~v~~~~~~~~~~---~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l 331 (367)
+..+.|+||+-++.-..+...+ .......++.+++.. ++||++.||++++++.++++.| +|+|++++.+...+|.
T Consensus 111 ~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G-~~gva~~~~i~~~~dp 189 (196)
T TIGR00693 111 EAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAG-ADGVAVVSAIMQAADP 189 (196)
T ss_pred HHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEhHHhhCCCCH
Confidence 3456799999864221111111 112345677777665 4899999999999999999998 9999999999977765
Q ss_pred HHHH
Q 017733 332 PKRF 335 (367)
Q Consensus 332 ~~k~ 335 (367)
...+
T Consensus 190 ~~~~ 193 (196)
T TIGR00693 190 KAAA 193 (196)
T ss_pred HHHH
Confidence 4443
No 191
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.0019 Score=57.98 Aligned_cols=134 Identities=22% Similarity=0.197 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.--++.|.++|.|.+=+.|+-. ..-....++..++. | ..+.+.+-.
T Consensus 70 ~~e~~ma~~aGAd~~tV~g~A~-------------------------~~TI~~~i~~A~~~-~-~~v~iDl~~------- 115 (217)
T COG0269 70 AIEARMAFEAGADWVTVLGAAD-------------------------DATIKKAIKVAKEY-G-KEVQIDLIG------- 115 (217)
T ss_pred HHHHHHHHHcCCCEEEEEecCC-------------------------HHHHHHHHHHHHHc-C-CeEEEEeec-------
Confidence 4457788899999999887541 11222333333332 2 134554432
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHcCCCcEE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE--GTFIAAGGYSRDEGNKAVAANYTDLV 319 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V 319 (367)
..+.+ .-.+.|++.|+|++.+|.+.-.+..+..+..+.+..+|+..+ ..|...||+++++...++..| +|.|
T Consensus 116 --~~~~~---~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~-~~iv 189 (217)
T COG0269 116 --VWDPE---QRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIG-ADIV 189 (217)
T ss_pred --CCCHH---HHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCC-CCEE
Confidence 11222 356677779999999987754333333332466778888876 579999999999999999999 9999
Q ss_pred cccHHHHhCCchHHHH
Q 017733 320 AFGRLFLANPDLPKRF 335 (367)
Q Consensus 320 ~~gR~~ladP~l~~k~ 335 (367)
.+||+.....+-.+.+
T Consensus 190 IvGraIt~a~dp~~~a 205 (217)
T COG0269 190 IVGRAITGAKDPAEAA 205 (217)
T ss_pred EECchhcCCCCHHHHH
Confidence 9999999887754443
No 192
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.0037 Score=57.16 Aligned_cols=138 Identities=17% Similarity=0.109 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~ 240 (367)
.+.++.+.++|++-|-|-..- ..| .+.++++.+..|.. .|++...-...-..
T Consensus 87 ~~~v~~ll~~G~~rViiGt~a----------v~~-----------------p~~v~~~~~~~g~rivv~lD~r~g~vav~ 139 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAA----------VKN-----------------PDLVKELCEEYGDRIVVALDARDGKVAVS 139 (241)
T ss_pred HHHHHHHHHCCCCEEEEecce----------ecC-----------------HHHHHHHHHHcCCcEEEEEEccCCccccc
Confidence 567778888999999864321 111 56677777888832 24443332111111
Q ss_pred cCCC-ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHc-CCCc
Q 017733 241 AVDS-NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAA-NYTD 317 (367)
Q Consensus 241 ~~~~-~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~-G~~D 317 (367)
+|. .+.-+..++++++++.|+..+-++.-+....-. .++.+..+++.+.+++||+++||+ +.++.+.+-+. | ++
T Consensus 140 -GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~-G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G-~~ 216 (241)
T COG0106 140 -GWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLS-GPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSG-VE 216 (241)
T ss_pred -cccccccCCHHHHHHHHHhcCCCeEEEEecccccccC-CCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCC-Cc
Confidence 121 122235679999999998766554432222222 235677888999999999999999 78888887777 6 89
Q ss_pred EEcccHHHHhCC
Q 017733 318 LVAFGRLFLANP 329 (367)
Q Consensus 318 ~V~~gR~~ladP 329 (367)
.|.+||+|+..-
T Consensus 217 GvIvG~ALy~g~ 228 (241)
T COG0106 217 GVIVGRALYEGK 228 (241)
T ss_pred EEEEehHHhcCC
Confidence 999999998764
No 193
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.51 E-value=0.0034 Score=58.36 Aligned_cols=155 Identities=14% Similarity=0.120 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEe
Q 017733 153 EIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRL 232 (367)
Q Consensus 153 eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrl 232 (367)
++++|++.-.+-|+..+++|+|||-|.==+ =-|+ .++. --........++.+||+.++ .|+||-+
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~-------D~Py-~~~~------~~etvaaM~~i~~~v~~~~~-~p~GVnv 87 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMG-------DVPY-PKRV------GPETVAAMARIAREVRREVS-VPVGVNV 87 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCC-------CCCc-cCCC------CHHHHHHHHHHHHHHHHhCC-CCEEeee
Confidence 889999999999999999999999874211 1122 1111 11245566778888888873 4677655
Q ss_pred CCCcc-------------------ccc--cCC-CChHHHHHHHHHHhhh-------------------------------
Q 017733 233 SPYAE-------------------CAE--AVD-SNPEALGLYMAKALNK------------------------------- 259 (367)
Q Consensus 233 s~~~~-------------------~~~--~~~-~~~~~~~~~l~~~L~~------------------------------- 259 (367)
-..+. |.+ ... +.....+.++.+.-..
T Consensus 88 L~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a 167 (254)
T PF03437_consen 88 LRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDA 167 (254)
T ss_pred ecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHH
Confidence 33110 000 000 0000111122222112
Q ss_pred ---cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 260 ---FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 260 ---~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
.+.|.+-++.... +.++....++.+|+.++.||++++|.|++.+.++|+. +|.+.+|..+=.|
T Consensus 168 ~~~~~aDaviVtG~~T----G~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~--ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 168 VERGGADAVIVTGKAT----GEPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY--ADGAIVGSYFKKD 233 (254)
T ss_pred HHhcCCCEEEECCccc----CCCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh--CCEEEEeeeeeeC
Confidence 2233332222111 2234556788899999999999999999999999976 8999999887643
No 194
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.51 E-value=0.0033 Score=57.71 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
.+.+..+.+.++|+|.+-+..--| +|. | ...|-.++|+++|+..++.++-+++-+..
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg----~fv-p---------------n~~~G~~~v~~lr~~~~~~~lDvHLm~~~--- 76 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDG----HFV-P---------------NLSFGPPVVKSLRKHLPNTFLDCHLMVSN--- 76 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccC----ccC-C---------------CcCcCHHHHHHHHhcCCCCCEEEEECCCC---
Confidence 567888888899999887655332 222 2 12344889999998765446777775421
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc---------------------cC----------------------
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ---------------------LT---------------------- 276 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~---------------------~~---------------------- 276 (367)
.+ ..++.+.++|+|++++|.-.... +.
T Consensus 77 -------p~---~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~ 146 (228)
T PTZ00170 77 -------PE---KWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMT 146 (228)
T ss_pred -------HH---HHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhh
Confidence 11 23344555666666555211000 00
Q ss_pred ------Cchh---hHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHH
Q 017733 277 ------DKSE---TQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 277 ------~~~~---~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
+... ...-++.+++..+ ..+.+.||++++...++.+.| +|.+.+||+++..+++...
T Consensus 147 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aG-ad~iVvGsaI~~a~d~~~~ 213 (228)
T PTZ00170 147 VEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAG-ANVIVAGSSIFKAKDRKQA 213 (228)
T ss_pred cccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcC-CCEEEEchHHhCCCCHHHH
Confidence 0000 0122344555543 457788999999999999999 9999999999988775433
No 195
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.51 E-value=0.00055 Score=63.48 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=69.9
Q ss_pred HHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 252 YMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 252 ~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
..++.+.+.|..++|+..-..-. ..+.+...++.+.+.++.||...||+ |.++++.++..| +|-|.++..++.||+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~G-a~~vvigT~a~~~p~ 111 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGG-RARVNGGTAALENPW 111 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcC-CCEEEECchhhCCHH
Confidence 35566788899999987543221 34456778899999999999999999 899999999999 999999999999999
Q ss_pred hHHHHHhC
Q 017733 331 LPKRFELN 338 (367)
Q Consensus 331 l~~k~~~g 338 (367)
|..++.+.
T Consensus 112 ~~~~~~~~ 119 (243)
T TIGR01919 112 WAAAVIRY 119 (243)
T ss_pred HHHHHHHH
Confidence 99998753
No 196
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.50 E-value=0.0015 Score=58.85 Aligned_cols=121 Identities=21% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDS 244 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~ 244 (367)
..+.+.|.|+|+||+.. ..+.++++|+..+.. ...+.++..
T Consensus 67 ~ia~~~~~d~Vqlhg~e-----------------------------~~~~~~~l~~~~~~~~i~~i~~~~~--------- 108 (203)
T cd00405 67 EIAEELGLDVVQLHGDE-----------------------------SPEYCAQLRARLGLPVIKAIRVKDE--------- 108 (203)
T ss_pred HHHHhcCCCEEEECCCC-----------------------------CHHHHHHHHhhcCCcEEEEEecCCh---------
Confidence 45667899999998532 034567788877643 223444431
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCcccc--CCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEccc
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQL--TDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 322 (367)
.+ .... .....++||+-+...+.... ......+..++.++ .+.|+++.||+|++...++++.+.+|.|.+.
T Consensus 109 --~~--~~~~-~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~ 181 (203)
T cd00405 109 --ED--LEKA-AAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLVRPYGVDVS 181 (203)
T ss_pred --hh--HHHh-hhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhcCCCEEEcC
Confidence 11 1111 22345889985533222111 11223344455554 5789999999999999999999889999999
Q ss_pred HHHHhCCch
Q 017733 323 RLFLANPDL 331 (367)
Q Consensus 323 R~~ladP~l 331 (367)
+++...|-.
T Consensus 182 S~ie~~pg~ 190 (203)
T cd00405 182 SGVETSPGI 190 (203)
T ss_pred CcccCCCCC
Confidence 999877653
No 197
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.01 Score=53.69 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=112.5
Q ss_pred hhhhHHHHHHHHcCCeeE-Ecccc--CCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017733 88 EAWKPIVDAVHQKGGIIF-CQIWH--AGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLA 164 (367)
Q Consensus 88 ~~~~~l~~~vh~~g~~~~-~Ql~h--~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~a 164 (367)
+.+.-+.+++...|+.++ +-+-- ..+.+...+ ...+-|..+.+.|.+.| ++. .++-++.
T Consensus 27 ~s~~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~----l~~l~~~~~~~LPNTaG-----c~t---------aeEAv~t 88 (262)
T COG2022 27 PSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGI----LDLLIPLGVTLLPNTAG-----CRT---------AEEAVRT 88 (262)
T ss_pred CCHHHHHHHHHhcCCceEEEEEEeecccCCCcchH----HHHhhhcCcEeCCCccc-----cCC---------HHHHHHH
Confidence 346677888888887654 22200 011111111 12245555555554433 221 1455788
Q ss_pred HHHHHHh-CCCEE--EEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 165 ARNAIEA-GFDGV--EIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 165 A~~a~~a-GfdgV--ei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
|++|.|+ +-|-| |+++.+-||+ | | ..|.+++.+..+.+.++.+ |+.
T Consensus 89 ArlARE~~~t~wiKlEVi~d~~tLl-----P------D------------~~etl~Aae~Lv~eGF~Vl---PY~----- 137 (262)
T COG2022 89 ARLAREALGTNWIKLEVIGDEKTLL-----P------D------------PIETLKAAEQLVKEGFVVL---PYT----- 137 (262)
T ss_pred HHHHHHHccCCeEEEEEecCCcccC-----C------C------------hHHHHHHHHHHHhCCCEEe---ecc-----
Confidence 8888886 44544 6665543322 1 2 3788899999997654332 321
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCcccc--CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL--TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
..|+ -+|++|++.|+..+- +...+. .....+.+.++.|++..++|||.--|+ +|.+|.++++-| ||.
T Consensus 138 -~dD~-----v~arrLee~GcaavM---Pl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG-~Da 207 (262)
T COG2022 138 -TDDP-----VLARRLEEAGCAAVM---PLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELG-ADA 207 (262)
T ss_pred -CCCH-----HHHHHHHhcCceEec---cccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcc-cce
Confidence 1222 389999999987653 222111 123446678999999999999999999 999999999999 999
Q ss_pred EcccHHHHh
Q 017733 319 VAFGRLFLA 327 (367)
Q Consensus 319 V~~gR~~la 327 (367)
|.+..+...
T Consensus 208 VL~NTAiA~ 216 (262)
T COG2022 208 VLLNTAIAR 216 (262)
T ss_pred eehhhHhhc
Confidence 999887654
No 198
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.50 E-value=0.0022 Score=62.90 Aligned_cols=133 Identities=19% Similarity=0.094 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCC-CCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEY-GGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~y-Ggs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
.+.+-++.+.++|.|.|-||+- .|..+| +|+- .. .++. ++++..+ -+|.+ ..
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgr--------------t~~q~~~sg~~--~p---~~l~-~~i~~~~-IPVI~--G~---- 195 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGT--------------LVSAEHVSTSG--EP---LNLK-EFIGELD-VPVIA--GG---- 195 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEecc--------------chhhhccCCCC--CH---HHHH-HHHHHCC-CCEEE--eC----
Confidence 4567778888999999999852 244555 2211 12 2322 3333343 25443 11
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC----CchhhHHHHHHH-------HHhcC---CcEEEeCCC-C
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT----DKSETQRSLLSM-------RRAFE---GTFIAAGGY-S 303 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~----~~~~~~~~~~~i-------r~~~~---~pvi~~Ggi-t 303 (367)
-.+.+++ ..+.+.|+|.|.+..+...... ...+....+..+ .+.+. +|||+.||| +
T Consensus 196 -----V~t~e~A----~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t 266 (369)
T TIGR01304 196 -----VNDYTTA----LHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET 266 (369)
T ss_pred -----CCCHHHH----HHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 1123333 3344589999875432211110 112222222222 22233 799999999 8
Q ss_pred HHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 304 RDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 304 ~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
..++.++|+.| +|.|++|++++.--
T Consensus 267 g~di~kAlAlG-AdaV~iGt~~a~a~ 291 (369)
T TIGR01304 267 SGDLVKAIACG-ADAVVLGSPLARAA 291 (369)
T ss_pred HHHHHHHHHcC-CCEeeeHHHHHhhh
Confidence 99999999999 99999999998743
No 199
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.49 E-value=0.013 Score=55.51 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=116.1
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+.++-++++..+.++++++|+...... + .|...+++ +.+|.. +...+. .+.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~----~--~g~~~~~~~~~~~A~~~~VPVa-----lHLDH~--~~~------- 87 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQGAIK----Y--AGIEYISAMVRTAAEKASVPVA-----LHLDHG--TDF------- 87 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHhh----h--CCHHHHHHHHHHHHHHCCCCEE-----EECCCC--CCH-------
Confidence 4577889999999999999999753221 0 01111111 011110 001111 122
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~ 235 (367)
+..++|.++||+.|-+.+.+ -++|...+.+.++++..+.. |-. .||. +...
T Consensus 88 ----e~i~~ai~~GftSVM~DgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gvsVEaElG~-vgg~ 141 (284)
T PRK12857 88 ----EQVMKCIRNGFTSVMIDGSK--------------------LPLEENIALTKKVVEIAHAV-GVSVEAELGK-IGGT 141 (284)
T ss_pred ----HHHHHHHHcCCCeEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEeee-cCCc
Confidence 23566777899999988765 15688899999999998864 211 2332 2222
Q ss_pred ccc-c-cc--CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh--hHHHHHHHHHhcCCcEEEeC--CCCHHHH
Q 017733 236 AEC-A-EA--VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE--TQRSLLSMRRAFEGTFIAAG--GYSRDEG 307 (367)
Q Consensus 236 ~~~-~-~~--~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~G--git~~~a 307 (367)
++. . +. .....++++.+|++ +.|+|.+-++-++.+..+...+ +.+.++.|++.+++|++.=| |+..++.
T Consensus 142 e~~~~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~ 218 (284)
T PRK12857 142 EDDITVDEREAAMTDPEEARRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAI 218 (284)
T ss_pred cCCCCcccchhhcCCHHHHHHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 221 0 00 01235677777764 5699999998888665554333 44678899999999976555 4678999
Q ss_pred HHHHHcCCCcEEcccHHHH
Q 017733 308 NKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 308 ~~~L~~G~~D~V~~gR~~l 326 (367)
.++++.| +-=|=++..+.
T Consensus 219 ~~ai~~G-i~KiNi~T~~~ 236 (284)
T PRK12857 219 RKAISLG-VRKVNIDTNIR 236 (284)
T ss_pred HHHHHcC-CeEEEeCcHHH
Confidence 9999999 44566665543
No 200
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.49 E-value=0.0043 Score=58.11 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
.+..+.++|+|+|-|.+.- |+ ..-+.++++.+++. | -.+.|.++-
T Consensus 125 qi~~a~~~GAD~VlLi~~~-------l~-----------------~~~l~~li~~a~~l-G-l~~lvevh~--------- 169 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA-------LD-----------------DEQLKELLDYAHSL-G-LDVLVEVHD--------- 169 (260)
T ss_pred HHHHHHHcCCCEEEEEecc-------CC-----------------HHHHHHHHHHHHHc-C-CeEEEEeCC---------
Confidence 4777889999999987642 11 12456777777663 4 234444432
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE--GTFIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
.+++ +...+.|+|+|.++.++..... ........+.+.++ .++|+.||+ |++++.++++.| +|.|.
T Consensus 170 ---~~E~----~~A~~~gadiIgin~rdl~~~~---~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~G-ad~vl 238 (260)
T PRK00278 170 ---EEEL----ERALKLGAPLIGINNRNLKTFE---VDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAG-ADAVL 238 (260)
T ss_pred ---HHHH----HHHHHcCCCEEEECCCCccccc---CCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcC-CCEEE
Confidence 2333 2244679999998765543221 12345566666664 488998888 899999999998 99999
Q ss_pred ccHHHHhCCchHHHHH
Q 017733 321 FGRLFLANPDLPKRFE 336 (367)
Q Consensus 321 ~gR~~ladP~l~~k~~ 336 (367)
+|++++..++....++
T Consensus 239 VGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 239 VGESLMRADDPGAALR 254 (260)
T ss_pred ECHHHcCCCCHHHHHH
Confidence 9999999888765554
No 201
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.48 E-value=0.0051 Score=61.11 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=54.9
Q ss_pred hhhcCccEEEEecCCcc---cc-CCchhhHHHHHHHHHhc---------CCcEEEeCCCCHHHHHHHHHcCCCcEEcccH
Q 017733 257 LNKFKLLYLHVIEPRMI---QL-TDKSETQRSLLSMRRAF---------EGTFIAAGGYSRDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 257 L~~~Gvd~i~v~~~~~~---~~-~~~~~~~~~~~~ir~~~---------~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR 323 (367)
....|+|||-+.. -+. .+ ...+.....++.+++.+ .+||++-|||+++++.++++.| +|.|++-|
T Consensus 316 A~~~gaDYI~lGP-IFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aG-a~GVAVVS 393 (437)
T PRK12290 316 IVQIQPSYIALGH-IFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCG-VSSLAVVR 393 (437)
T ss_pred HhhcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeh
Confidence 4467999998742 221 11 12223344555555544 6899999999999999999999 99999999
Q ss_pred HHHhCCchHHHH
Q 017733 324 LFLANPDLPKRF 335 (367)
Q Consensus 324 ~~ladP~l~~k~ 335 (367)
+++..+|....+
T Consensus 394 AI~~A~DP~aa~ 405 (437)
T PRK12290 394 AITLAEDPQLVI 405 (437)
T ss_pred HhhcCCCHHHHH
Confidence 999887754443
No 202
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.47 E-value=0.0011 Score=65.17 Aligned_cols=99 Identities=14% Similarity=0.021 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 211 FALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 211 ~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.-+-|+.+|+.++ -+|.+|=-. +.++ ++.+.+.|+|.|.|++..-.+....++....+..+++
T Consensus 240 ~tW~~i~~lr~~~~-~pvivKgV~-----------~~~d----A~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~ 303 (383)
T cd03332 240 LTWEDLAFLREWTD-LPIVLKGIL-----------HPDD----ARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVE 303 (383)
T ss_pred CCHHHHHHHHHhcC-CCEEEecCC-----------CHHH----HHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHH
Confidence 44588999999884 477776211 2333 3345678999999875432222233444566777888
Q ss_pred hc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHH
Q 017733 291 AF--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 291 ~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.+ ++||++.||+ +..+..++|.-| +|+|++||+++
T Consensus 304 ~~~~~~~vi~dGGIr~G~Dv~KALaLG-A~~v~iGr~~l 341 (383)
T cd03332 304 AVGDRLTVLFDSGVRTGADIMKALALG-AKAVLIGRPYA 341 (383)
T ss_pred HhcCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence 77 4899999999 899999999999 99999999999
No 203
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.47 E-value=0.011 Score=55.98 Aligned_cols=190 Identities=16% Similarity=0.120 Sum_probs=119.2
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+.++.++++..+.++++++|+...... + .+...+.+ +.+|.. +...+. .+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~----~--~g~~~~~~~~~~~a~~~~VPVa-----lHLDH~--~~-------- 86 (284)
T PRK12737 28 LETLQVVVETAAELRSPVILAGTPGTFS----Y--AGTDYIVAIAEVAARKYNIPLA-----LHLDHH--ED-------- 86 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccHHh----h--CCHHHHHHHHHHHHHHCCCCEE-----EECCCC--CC--------
Confidence 4678889999999999999999764321 0 01111111 011110 001111 11
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~ 235 (367)
.+..++|.++||+-|-+.+.+ -+++...+.+.++++-.++. |-. .|| .+...
T Consensus 87 ---~e~i~~ai~~GftSVMiDgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gvsVEaElG-~igg~ 141 (284)
T PRK12737 87 ---LDDIKKKVRAGIRSVMIDGSH--------------------LSFEENIAIVKEVVEFCHRY-DASVEAELG-RLGGQ 141 (284)
T ss_pred ---HHHHHHHHHcCCCeEEecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEe-eccCc
Confidence 234578888999999887765 15677899999999999886 211 233 22222
Q ss_pred ccc-c-c--cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh--hHHHHHHHHHhcCCcEEEeCC--CCHHHH
Q 017733 236 AEC-A-E--AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE--TQRSLLSMRRAFEGTFIAAGG--YSRDEG 307 (367)
Q Consensus 236 ~~~-~-~--~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a 307 (367)
++. . + .....+++++.+|++ +.|+|.+-++-++.+..+...+ +.+.++.|++.+++|++.=|+ +..++.
T Consensus 142 e~~~~~~~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~ 218 (284)
T PRK12737 142 EDDLVVDEKDAMYTNPDAAAEFVE---RTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDV 218 (284)
T ss_pred cCCcccccccccCCCHHHHHHHHH---HhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence 221 0 0 011335677777765 4799999998888665554333 345689999999999776554 578899
Q ss_pred HHHHHcCCCcEEcccHHHH
Q 017733 308 NKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 308 ~~~L~~G~~D~V~~gR~~l 326 (367)
.++++.| +-=|=+++.+.
T Consensus 219 ~kai~~G-i~KiNi~T~l~ 236 (284)
T PRK12737 219 KKAISLG-ICKVNVATELK 236 (284)
T ss_pred HHHHHCC-CeEEEeCcHHH
Confidence 9999999 55566666654
No 204
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.45 E-value=0.0084 Score=57.19 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=114.1
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc---------CCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS---------TSKGVTPGVDGLDWSPPRPLSIEEIPKI 157 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p---------s~~~~~~~~~~~~~~~~~~mt~~eI~~i 157 (367)
.+.++-+++++.+.++++++|+...... + .+...+.+ +.+|.. +...+. .+
T Consensus 27 ~e~~~avi~AAe~~~sPvIlq~s~~~~~----~--~g~~~~~~~~~~~a~~~~~VPVa-----lHLDHg--~~------- 86 (307)
T PRK05835 27 FEMLNAIFEAGNEENSPLFIQASEGAIK----Y--MGIDMAVGMVKIMCERYPHIPVA-----LHLDHG--TT------- 86 (307)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHh----h--CChHHHHHHHHHHHHhcCCCeEE-----EECCCC--CC-------
Confidence 4678889999999999999999664321 0 01000000 001110 001111 12
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCC
Q 017733 158 VNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPY 235 (367)
Q Consensus 158 i~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~ 235 (367)
.+.+++|.++||+-|-+.+.| -+++...+.+.++++-.+..-=.- .|| ++...
T Consensus 87 ----~e~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~~gv~VEaElG-~vgg~ 141 (307)
T PRK05835 87 ----FESCEKAVKAGFTSVMIDASH--------------------HAFEENLELTSKVVKMAHNAGVSVEAELG-RLMGI 141 (307)
T ss_pred ----HHHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHcCCEEEEEec-ccCCc
Confidence 344667889999999988765 245677888999998888652110 233 22222
Q ss_pred cccccc----CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCC--ch--hhHHHHHHHHHhcCCcEEEeCC--CCHH
Q 017733 236 AECAEA----VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTD--KS--ETQRSLLSMRRAFEGTFIAAGG--YSRD 305 (367)
Q Consensus 236 ~~~~~~----~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~--~~--~~~~~~~~ir~~~~~pvi~~Gg--it~~ 305 (367)
++.... ....+++++.+|++ +.|||++-++-++.+..+. .. -+.+.++.|++.+++|++.=|+ +..+
T Consensus 142 ed~~~~~~~~~~~TdPeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e 218 (307)
T PRK05835 142 EDNISVDEKDAVLVNPKEAEQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDD 218 (307)
T ss_pred cCCcccccccccCCCHHHHHHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchH
Confidence 221000 01234676777764 5799999998888665553 22 2446788999999999776665 4444
Q ss_pred ---------------------HHHHHHHcCCCcEEcccHHH
Q 017733 306 ---------------------EGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 306 ---------------------~a~~~L~~G~~D~V~~gR~~ 325 (367)
+..++++.| +-=|=+++.+
T Consensus 219 ~~~~~~~~g~~~~~~~g~~~e~~~kai~~G-I~KiNi~T~l 258 (307)
T PRK05835 219 VRKSYLDAGGDLKGSKGVPFEFLQESVKGG-INKVNTDTDL 258 (307)
T ss_pred HhhhhhhhccccccccCCCHHHHHHHHHcC-ceEEEeChHH
Confidence 789999998 4445555554
No 205
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.44 E-value=0.0067 Score=62.27 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=57.1
Q ss_pred hhhcCccEEEEecC--CccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCc---EEcccHHHHhCCch
Q 017733 257 LNKFKLLYLHVIEP--RMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTD---LVAFGRLFLANPDL 331 (367)
Q Consensus 257 L~~~Gvd~i~v~~~--~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D---~V~~gR~~ladP~l 331 (367)
..+.|+||+-++.- +...+...+.....++.+.+..++||++.||++++.+.++++.| +| +|++.+.++..++.
T Consensus 406 a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G-~~~~~gvav~~~i~~~~d~ 484 (502)
T PLN02898 406 AWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESG-APNLKGVAVVSALFDQEDV 484 (502)
T ss_pred HhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcC-CCcCceEEEEeHHhcCCCH
Confidence 44679999986421 11111122234566777777788999999999999999999998 77 99999999877665
Q ss_pred HHHHH
Q 017733 332 PKRFE 336 (367)
Q Consensus 332 ~~k~~ 336 (367)
...++
T Consensus 485 ~~~~~ 489 (502)
T PLN02898 485 LKATR 489 (502)
T ss_pred HHHHH
Confidence 44443
No 206
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.44 E-value=0.0058 Score=60.33 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=82.4
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEE-EeCCCccccccCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGM-RLSPYAECAEAVD 243 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~v-rls~~~~~~~~~~ 243 (367)
++.+.++|+|.+-+|+..+ ...+.+.++++|+. | -.+++ =+++
T Consensus 243 v~~~a~aGAD~vTVH~ea~-------------------------~~ti~~ai~~akk~-G-ikvgVD~lnp--------- 286 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-------------------------ISTIEKAIHEAQKT-G-IYSILDMLNV--------- 286 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc-C-CEEEEEEcCC---------
Confidence 6667789999999997542 12356677777775 2 24566 3344
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh-cCCcEEEeCCCCHHHHHHHHHcCCCcEEccc
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA-FEGTFIAAGGYSRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~-~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 322 (367)
.++.+ .++.+ ..++|++.++.+.-.. ...+....++.+|+. .+.++.+.||++.+...++++.| +|.+.+|
T Consensus 287 ~tp~e----~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aG-ADivVVG 358 (391)
T PRK13307 287 EDPVK----LLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAG-ADILVVG 358 (391)
T ss_pred CCHHH----HHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcC-CCEEEEe
Confidence 22333 33444 4579999876421111 112233456667775 35689999999999999999999 9999999
Q ss_pred HHHHhCCchH
Q 017733 323 RLFLANPDLP 332 (367)
Q Consensus 323 R~~ladP~l~ 332 (367)
|+++..+|..
T Consensus 359 saIf~a~Dp~ 368 (391)
T PRK13307 359 RAITKSKDVR 368 (391)
T ss_pred HHHhCCCCHH
Confidence 9999777743
No 207
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.43 E-value=0.01 Score=53.63 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=49.1
Q ss_pred hhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 258 NKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE--GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 258 ~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
.+.|+||+-+.. ........++.+++.++ +|+++.||++++.+.++++.| +|.|++++.++..
T Consensus 121 ~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aG-a~~vav~s~l~~~ 185 (206)
T PRK09140 121 LRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAG-AAGFGLGSALYRP 185 (206)
T ss_pred HHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCC-CeEEEEehHhccc
Confidence 356777776511 11123567888888883 999999999999999999999 9999999999864
No 208
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.43 E-value=0.00097 Score=61.12 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=69.6
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+++.|++.+++..-.... .....+...++.+++.++.|+...||+ +.++++.+++.| +|.|.++..++.||
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~-~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~G-a~~vvlgs~~l~d~ 108 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAK-EGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLG-VDRVIIGTAAVENP 108 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-cCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEEChHHhhCH
Confidence 457888899999999986432211 123335677888999999999999999 899999999999 99999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
++..++.+.
T Consensus 109 ~~~~~~~~~ 117 (230)
T TIGR00007 109 DLVKELLKE 117 (230)
T ss_pred HHHHHHHHH
Confidence 988887654
No 209
>PRK08999 hypothetical protein; Provisional
Probab=97.40 E-value=0.0021 Score=61.68 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=50.5
Q ss_pred HhhhcCccEEEEecCCcc--ccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHH
Q 017733 256 ALNKFKLLYLHVIEPRMI--QLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 256 ~L~~~Gvd~i~v~~~~~~--~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
...+.|+||+-++.-..+ .+...+.....++.+++.+++||++-|||+++++.++++.| +|.|++.+++
T Consensus 241 ~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g-~~gva~i~~~ 311 (312)
T PRK08999 241 RAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHG-AQGIAGIRGL 311 (312)
T ss_pred HHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhC-CCEEEEEEEe
Confidence 345679999987532111 11122223466778888889999999999999999999999 8999887654
No 210
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.39 E-value=0.00074 Score=62.24 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=71.2
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.++++.+.+.|+|++|+..-+.. .....+...++.+.+.+.+|+...||+ +.++++++|..| ++-|.++...+.|
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~G-a~~viigt~~~~~- 113 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRG-ASRVIVGTETLPS- 113 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcC-CCeEEEcceeccc-
Confidence 45888888999999999765432 244556778889999889999999999 899999999999 9999999999999
Q ss_pred chHHHHHhC
Q 017733 330 DLPKRFELN 338 (367)
Q Consensus 330 ~l~~k~~~g 338 (367)
+|..++.+.
T Consensus 114 ~~~~~~~~~ 122 (233)
T cd04723 114 DDDEDRLAA 122 (233)
T ss_pred hHHHHHHHh
Confidence 999998765
No 211
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.39 E-value=0.0011 Score=60.39 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=61.9
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
+..++.++-...+-|++-+.+ ++.+.+.+.++.+++.+ +.|++.+||+ ++++++++++.| +|.|.+|..+..
T Consensus 140 ~~~lA~~~~g~~~vYlE~gs~-----~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs~~~~ 213 (223)
T TIGR01768 140 YAAMAEEMLGMPIIYLEAGSG-----APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG-ADTIVTGNVIEE 213 (223)
T ss_pred HHHHHHHHcCCcEEEEEecCC-----CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC-CCEEEECcHHhh
Confidence 345555554444556664322 23334567789999998 8999999999 899999999988 999999999999
Q ss_pred CCchHHHHH
Q 017733 328 NPDLPKRFE 336 (367)
Q Consensus 328 dP~l~~k~~ 336 (367)
||++..+..
T Consensus 214 dp~~~~~~v 222 (223)
T TIGR01768 214 DVDKALETI 222 (223)
T ss_pred CHHHHHHhh
Confidence 999988764
No 212
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.38 E-value=0.0056 Score=65.89 Aligned_cols=104 Identities=9% Similarity=-0.027 Sum_probs=69.1
Q ss_pred HHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHH---HhhhcCccEEEEecCCcc--ccCCc-hhhHHHHHHH
Q 017733 216 VEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAK---ALNKFKLLYLHVIEPRMI--QLTDK-SETQRSLLSM 288 (367)
Q Consensus 216 i~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~---~L~~~Gvd~i~v~~~~~~--~~~~~-~~~~~~~~~i 288 (367)
++.+|+..+++ .|++ |.. +.++...... .+-++|+||+-++.-..+ .+... +.....++.+
T Consensus 91 ~~~~r~~~~~~~~iG~--S~h----------~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~ 158 (755)
T PRK09517 91 YTQARRLLPAHLELGL--TIE----------TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEI 158 (755)
T ss_pred HHHHHHhcCCCCEEEE--eCC----------CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHH
Confidence 46677777766 5676 542 2333322211 122346999987532111 11111 2245667778
Q ss_pred HHhcC---CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchH
Q 017733 289 RRAFE---GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLP 332 (367)
Q Consensus 289 r~~~~---~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~ 332 (367)
++.++ +||++-|||+++++.++++.| +|+|++.+++...+|..
T Consensus 159 ~~~~~~~~iPv~AiGGI~~~~~~~~~~~G-a~giAvisai~~a~d~~ 204 (755)
T PRK09517 159 AAVAQDHGIASVAIGGVGLRNAAELAATG-IDGLCVVSAIMAAANPA 204 (755)
T ss_pred HHhcCcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhCCCCHH
Confidence 88877 999999999999999999999 99999999999877743
No 213
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.35 E-value=0.0053 Score=56.82 Aligned_cols=138 Identities=17% Similarity=0.071 Sum_probs=85.9
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~ 240 (367)
.+.++++.++|+|-|-|.... ++ .+ +.++++. ..|.. .+++..........
T Consensus 85 ~e~~~~~l~~Ga~rvvigT~a----------------------~~-~p----~~l~~~~-~~~~~ivvslD~k~g~v~~~ 136 (241)
T PRK14114 85 LDYAEKLRKLGYRRQIVSSKV----------------------LE-DP----SFLKFLK-EIDVEPVFSLDTRGGKVAFK 136 (241)
T ss_pred HHHHHHHHHCCCCEEEECchh----------------------hC-CH----HHHHHHH-HhCCCEEEEEEccCCEEeeC
Confidence 456777778999998765422 11 13 3445552 35544 45555432111111
Q ss_pred cCC-CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHc-----
Q 017733 241 AVD-SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAA----- 313 (367)
Q Consensus 241 ~~~-~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~----- 313 (367)
++ ..+.-...++++.+++.|+..+-++.-....+. ..++.+.++.+++.+++||+++||+ +.++..++.+.
T Consensus 137 -gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~-~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~ 214 (241)
T PRK14114 137 -GWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL-QEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETN 214 (241)
T ss_pred -CCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcC-CCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccC
Confidence 11 111112456888999999876655422221111 2245677888998899999999999 89999988875
Q ss_pred CCCcEEcccHHHHhCC
Q 017733 314 NYTDLVAFGRLFLANP 329 (367)
Q Consensus 314 G~~D~V~~gR~~ladP 329 (367)
|.++.|.+|+++...-
T Consensus 215 g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 215 GLLKGVIVGRAFLEGI 230 (241)
T ss_pred CcEEEEEEehHHHCCC
Confidence 4599999999987653
No 214
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.34 E-value=0.012 Score=54.71 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhh----------HhHHHHHHHHHHHHHhCCcce
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLEN----------RCRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~en----------r~r~~~eii~aiR~~vg~~~i 228 (367)
+...+..+.+.++|.|.+||=. |.++---| |-.++. ...-++|+++.+|+.-...|+
T Consensus 31 e~s~e~i~~L~~~GaD~iELGv-----------PfSDPvAD--GP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pi 97 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGV-----------PFSDPVAD--GPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPI 97 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecC-----------CCCCcCcc--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCE
Confidence 5677888888999999999854 44444444 322221 234578999999977433342
Q ss_pred --EEEeCCC-----ccc---------cc-cCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc----------------
Q 017733 229 --GMRLSPY-----AEC---------AE-AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL---------------- 275 (367)
Q Consensus 229 --~vrls~~-----~~~---------~~-~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~---------------- 275 (367)
+.=.|+- +.| ++ ..-+.|.|+...+.+..++.|+++|-+..++....
T Consensus 98 vlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~v 177 (265)
T COG0159 98 VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYV 177 (265)
T ss_pred EEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 2222321 010 00 01245778888888888899999998866543210
Q ss_pred ------CCc-h---hhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHH
Q 017733 276 ------TDK-S---ETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 276 ------~~~-~---~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
... + .....++.+|+..+.|++.+=|+ ++++++++++. +|.|.+|.+++
T Consensus 178 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV 237 (265)
T COG0159 178 SRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV 237 (265)
T ss_pred ecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence 000 0 13456788999999998888788 89999999988 89999999865
No 215
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.34 E-value=0.0019 Score=63.16 Aligned_cols=99 Identities=15% Similarity=0.005 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
.-+-|+.+|+..+ -||.||=-. +.+ -++.+.+.|+|.|.|++..-.+....++....+..+++.
T Consensus 212 tW~di~wlr~~~~-~PiivKgV~-----------~~~----dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~a 275 (367)
T PLN02493 212 SWKDVQWLQTITK-LPILVKGVL-----------TGE----DARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKA 275 (367)
T ss_pred CHHHHHHHHhccC-CCEEeecCC-----------CHH----HHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHH
Confidence 3567889998874 477775432 233 344567789999999765332333333345566677776
Q ss_pred c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 292 F--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 292 ~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
+ ++||++.||| +..++.++|.-| +|+|++||+++.
T Consensus 276 v~~~~~vi~dGGIr~G~Dv~KALALG-A~aV~iGr~~l~ 313 (367)
T PLN02493 276 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 313 (367)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 5 3799999999 899999999999 999999999984
No 216
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.33 E-value=0.0069 Score=55.32 Aligned_cols=139 Identities=17% Similarity=0.262 Sum_probs=87.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC
Q 017733 146 PRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA 225 (367)
Q Consensus 146 ~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~ 225 (367)
.|-|.. +.+..++.| .++|.|-|-+|.=. ..-+.++++.||+. |
T Consensus 63 vHLMv~-~p~~~i~~~-------~~~gad~i~~H~Ea--------------------------~~~~~~~l~~ik~~-g- 106 (220)
T PRK08883 63 VHLMVK-PVDRIIPDF-------AKAGASMITFHVEA--------------------------SEHVDRTLQLIKEH-G- 106 (220)
T ss_pred EEeccC-CHHHHHHHH-------HHhCCCEEEEcccC--------------------------cccHHHHHHHHHHc-C-
Confidence 455553 344455444 45899999999732 11256788899985 2
Q ss_pred cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEE--ecCCccccCCchhhHHHHHHHHHhc-----CCcEEE
Q 017733 226 ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHV--IEPRMIQLTDKSETQRSLLSMRRAF-----EGTFIA 298 (367)
Q Consensus 226 ~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v--~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~ 298 (367)
-..++=++|. .+.+....+++. +|++-+ .++.+......+...+.++.+++.. +.|+.+
T Consensus 107 ~k~GlalnP~---------Tp~~~i~~~l~~-----~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v 172 (220)
T PRK08883 107 CQAGVVLNPA---------TPLHHLEYIMDK-----VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI 172 (220)
T ss_pred CcEEEEeCCC---------CCHHHHHHHHHh-----CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE
Confidence 2457777883 355555445443 344433 2333321111222334455566554 367888
Q ss_pred eCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHH
Q 017733 299 AGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRF 335 (367)
Q Consensus 299 ~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~ 335 (367)
-||++++.+.++++.| +|.+.+|++++..++....+
T Consensus 173 dGGI~~eni~~l~~aG-Ad~vVvGSaIf~~~d~~~~i 208 (220)
T PRK08883 173 DGGVKVDNIREIAEAG-ADMFVAGSAIFGQPDYKAVI 208 (220)
T ss_pred ECCCCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHH
Confidence 9999999999999999 99999999999777754443
No 217
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=97.33 E-value=0.013 Score=56.67 Aligned_cols=209 Identities=12% Similarity=0.058 Sum_probs=125.5
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccC-CCC-CCCCCC--CC-----ccc--------CCCCCCCCCCCCCCCCCCCC
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVS-NYG-LQPNGE--AP-----ISS--------TSKGVTPGVDGLDWSPPRPL 149 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~-~~~-~~~~~~--~~-----~~p--------s~~~~~~~~~~~~~~~~~~m 149 (367)
++..+-+++++.+..+++++|+......- ... +...++ .+ +++ +.+|.. ...-|..
T Consensus 31 ~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVa-------lHLDHg~ 103 (350)
T PRK09197 31 TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVI-------LHTDHCA 103 (350)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE-------EECCCCC
Confidence 46788899999999999999996643211 000 000000 00 000 111210 0011223
Q ss_pred C--hHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-
Q 017733 150 S--IEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE- 226 (367)
Q Consensus 150 t--~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~- 226 (367)
+ .+.|...++.=.+...++.++||+.|-+.++| -++|...+++.++++..+.. |-.
T Consensus 104 ~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~--------------------lpfEeNI~~TkevVe~Ah~~-GvsV 162 (350)
T PRK09197 104 KKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE--------------------EPLEENIEICSKYLERMAKA-GMTL 162 (350)
T ss_pred CcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEE
Confidence 4 56777777776677777778889999887655 35788899999999988854 211
Q ss_pred --ceEEEeCCCcccc--cc----CCCChHHHHHHHHHHhhh-cCccEEEEecCCccccCC-chh--hHHHHHHHHHhc--
Q 017733 227 --RVGMRLSPYAECA--EA----VDSNPEALGLYMAKALNK-FKLLYLHVIEPRMIQLTD-KSE--TQRSLLSMRRAF-- 292 (367)
Q Consensus 227 --~i~vrls~~~~~~--~~----~~~~~~~~~~~l~~~L~~-~Gvd~i~v~~~~~~~~~~-~~~--~~~~~~~ir~~~-- 292 (367)
.|+ ++...++.. .. ....+++++.+|+++..- .|+|.+-++-++.+..+. ..+ ..+.++.|++.+
T Consensus 163 EaELG-~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~ 241 (350)
T PRK09197 163 EIELG-VTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSK 241 (350)
T ss_pred EEEEe-ccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHH
Confidence 233 233222211 00 113357778888775421 334999998888766554 222 346688899988
Q ss_pred -------CCcEEEeCC--CCHHHHHHHHHcCCCcEEcccHHH
Q 017733 293 -------EGTFIAAGG--YSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 293 -------~~pvi~~Gg--it~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
++|++.=|+ ++.++.+++++.| +-=|=++..+
T Consensus 242 ~~~~~~~~vPLVLHGgSGipde~i~~ai~~G-I~KINi~T~l 282 (350)
T PRK09197 242 KFGLPAKPFDFVFHGGSGSTLEEIREAVSYG-VVKMNIDTDT 282 (350)
T ss_pred hhCCCCCCCCEEEeCCCCCCHHHHHHHHHCC-CeeEEeCcHH
Confidence 789776554 5789999999999 4445444443
No 218
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.33 E-value=0.0099 Score=52.91 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=48.9
Q ss_pred hhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 258 NKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 258 ~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.+.|+||+-+... + +....+++.+++.++ .|+++.||++++.+.++++.| +|.|+++..+.
T Consensus 114 ~~~Gad~i~~~p~------~-~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G-~~~v~v~s~i~ 175 (190)
T cd00452 114 LELGADIVKLFPA------E-AVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAG-VVAVGGGSLLP 175 (190)
T ss_pred HHCCCCEEEEcCC------c-ccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCC-CEEEEEchhcc
Confidence 4678999886311 1 123466788888774 899999999999999999999 99999999987
No 219
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.32 E-value=0.0019 Score=59.30 Aligned_cols=136 Identities=18% Similarity=0.102 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCC-ccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPY-AEC 238 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~-~~~ 238 (367)
.+.++++.++|++-|-|...- | +. .+.++.+.+..|+. .+++.+... ..+
T Consensus 85 ~ed~~~ll~~Ga~~Vvigt~~------~-----------------~~----~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 85 IEDAERLLDAGADRVVIGTEA------L-----------------ED----PELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp HHHHHHHHHTT-SEEEESHHH------H-----------------HC----CHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred HHHHHHHHHhCCCEEEeChHH------h-----------------hc----hhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 566778888999988876431 1 11 34567777777874 355555432 111
Q ss_pred cccCCCC-hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCC
Q 017733 239 AEAVDSN-PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYT 316 (367)
Q Consensus 239 ~~~~~~~-~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~ 316 (367)
.. ++.. +.-+..++++.+.+.|+..+-++.-........ ++.+.++.+++.++.||+++||+ +.++.+++...| +
T Consensus 138 ~~-gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G-~ 214 (229)
T PF00977_consen 138 TN-GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQG-PDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG-I 214 (229)
T ss_dssp ET-TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT-E
T ss_pred ec-CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCC-CCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC-C
Confidence 11 1111 112245688888999988665543322222222 35577889999999999999999 899999999998 7
Q ss_pred cEEcccHHHHh
Q 017733 317 DLVAFGRLFLA 327 (367)
Q Consensus 317 D~V~~gR~~la 327 (367)
|.|.+|++|..
T Consensus 215 ~gvivg~al~~ 225 (229)
T PF00977_consen 215 DGVIVGSALHE 225 (229)
T ss_dssp CEEEESHHHHT
T ss_pred cEEEEehHhhC
Confidence 99999999864
No 220
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.28 E-value=0.0095 Score=57.79 Aligned_cols=123 Identities=25% Similarity=0.175 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
|.+....+.+.+.+.|-.+.|. | ..++++++++. | -.+....+.
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~---------p-------------------~~~~i~~l~~~-g-i~v~~~v~s------ 145 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGL---------P-------------------PPEVIERLHAA-G-IKVIPQVTS------ 145 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSS---------C--------------------HHHHHHHHHT-T--EEEEEESS------
T ss_pred cccccccccccceEEEEeeccc---------c-------------------hHHHHHHHHHc-C-CccccccCC------
Confidence 4555566667788899987765 2 14567777764 2 133433332
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCC-ch-hhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCc
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTD-KS-ETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTD 317 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~-~~-~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D 317 (367)
.+ .++.+.+.|+|.|-+.......... .. ....+...+++.+++||++.||| +.+++..+|..| +|
T Consensus 146 ------~~----~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lG-A~ 214 (330)
T PF03060_consen 146 ------VR----EARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALG-AD 214 (330)
T ss_dssp ------HH----HHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT--S
T ss_pred ------HH----HHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcC-CC
Confidence 33 4556778899998775432221112 11 23456778999999999999999 899999999999 99
Q ss_pred EEcccHHHHhCCc
Q 017733 318 LVAFGRLFLANPD 330 (367)
Q Consensus 318 ~V~~gR~~ladP~ 330 (367)
.|.||..|++=++
T Consensus 215 gV~~GTrFl~t~E 227 (330)
T PF03060_consen 215 GVQMGTRFLATEE 227 (330)
T ss_dssp EEEESHHHHTSTT
T ss_pred EeecCCeEEeccc
Confidence 9999999998664
No 221
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0048 Score=55.78 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=93.4
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+.-++.+.+.|.|-|++-.--|+|.+. +...+.+-|++|++++++. +.+|.=.+
T Consensus 80 ~~Ea~~ai~~GAdEiDmVinig~~k~g-------------------~~~~V~~eI~~v~~a~~~~-~~lKVIlE------ 133 (228)
T COG0274 80 AAEAREAIENGADEIDMVINIGALKSG-------------------NWEAVEREIRAVVEACADA-VVLKVILE------ 133 (228)
T ss_pred HHHHHHHHHcCCCeeeeeeeHHHHhcC-------------------CHHHHHHHHHHHHHHhCCC-ceEEEEEe------
Confidence 455678889999999987655544332 2457888999999999874 33333221
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE--GTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
....+.++-...++...++|+|||-.|-+.. ......+..+.+++.+. +-|=++||+ |.+++..+++.| ++-
T Consensus 134 t~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ag-a~R 208 (228)
T COG0274 134 TGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAG-ATR 208 (228)
T ss_pred ccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHh-HHH
Confidence 1133445557778888899999998765533 22233455666677664 457789999 899999999999 888
Q ss_pred EcccHHH
Q 017733 319 VAFGRLF 325 (367)
Q Consensus 319 V~~gR~~ 325 (367)
++..++.
T Consensus 209 iGtSs~v 215 (228)
T COG0274 209 IGTSSGV 215 (228)
T ss_pred hccccHH
Confidence 8888775
No 222
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.28 E-value=0.027 Score=54.01 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=87.9
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCCcccc-
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPYAECA- 239 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~~~~~- 239 (367)
.+++|.++||+-|-+.+.+ -+++...+.+.++++..+.. |-. .|+ ++...++..
T Consensus 100 ~i~~ai~~GftSVMiD~S~--------------------lp~eeNI~~T~evv~~Ah~~-GvsVEaElG-~igg~ed~~~ 157 (321)
T PRK07084 100 LCKDCIDSGFSSVMIDGSH--------------------LPYEENVALTKKVVEYAHQF-DVTVEGELG-VLAGVEDEVS 157 (321)
T ss_pred HHHHHHHcCCCEEEeeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEe-eecCccCCcc
Confidence 3577888999999988765 14777889999999988864 211 233 222222110
Q ss_pred -ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc-----h--hhHHHHHHHHHhc-CCcEEEeC----------
Q 017733 240 -EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK-----S--ETQRSLLSMRRAF-EGTFIAAG---------- 300 (367)
Q Consensus 240 -~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~-----~--~~~~~~~~ir~~~-~~pvi~~G---------- 300 (367)
+.....+++++.+|++ +.|+|.+-++-++.+..+.. . -+.+.++.|++.+ ++|++.=|
T Consensus 158 ~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~ 234 (321)
T PRK07084 158 AEHHTYTQPEEVEDFVK---KTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVK 234 (321)
T ss_pred CcccccCCHHHHHHHHH---HhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHH
Confidence 0011234677777765 47999999988876655432 1 2456788999999 68966443
Q ss_pred -------------CCCHHHHHHHHHcCCCcEEcccHHH
Q 017733 301 -------------GYSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 301 -------------git~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
|+..++..++++.|. -=|=+++.+
T Consensus 235 ~~~~~g~~~~~~~Gi~~e~~~kai~~GI-~KINi~Tdl 271 (321)
T PRK07084 235 TINEYGGKLKDAIGIPEEQLRKAAKSAV-CKINIDSDG 271 (321)
T ss_pred HHHHhcCccccCCCCCHHHHHHHHHcCC-ceeccchHH
Confidence 345688999999994 445555544
No 223
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.27 E-value=0.0074 Score=55.61 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCcccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECA 239 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~ 239 (367)
...++.|++.|.|+|++..-.+++.+.- ..-..+-+.+|++.+... ++.+-.-+...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~-------------------~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~-- 137 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGN-------------------EDEVIEEIAAVVEECHKYGLKVILEPYLRGE-- 137 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTH-------------------HHHHHHHHHHHHHHHHTSEEEEEEEECECHH--
T ss_pred HHHHHHHHHcCCceeeeecccccccccc-------------------HHHHHHHHHHHHHHHhcCCcEEEEEEecCch--
Confidence 6778889999999999987655433322 234566667777777433 34433222100
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc----EEEeCCC-------CHHHHH
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT----FIAAGGY-------SRDEGN 308 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p----vi~~Ggi-------t~~~a~ 308 (367)
...+....+.....++...+.|+|||-++-+.. ..........++++-+.++.| |.++||+ +.+++.
T Consensus 138 ~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 138 EVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp HBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 001111334456778878889999998875522 111222334455555556778 9999997 367788
Q ss_pred HHHHcCCC--cEEcccHHHH
Q 017733 309 KAVAANYT--DLVAFGRLFL 326 (367)
Q Consensus 309 ~~L~~G~~--D~V~~gR~~l 326 (367)
++++.| + -.++.||...
T Consensus 216 ~~i~aG-a~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 216 EFIEAG-ADRIGTSSGRNIW 234 (236)
T ss_dssp HHHHTT-HSEEEEEEHHHHH
T ss_pred HHHHcC-ChhHHHHHHHHHH
Confidence 888999 8 4566666654
No 224
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.25 E-value=0.042 Score=51.86 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=116.5
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKIV 158 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~ii 158 (367)
.+..+-+++++.+.++++++|+...... + .+...+++ +.+|.. +...+. .+.
T Consensus 23 ~e~~~avi~AAe~~~sPvIi~~~~~~~~----~--~~~~~~~~~~~~~a~~~~VPV~-----lHLDH~--~~~------- 82 (276)
T cd00947 23 LETLKAILEAAEETRSPVILQISEGAIK----Y--AGLELLVAMVKAAAERASVPVA-----LHLDHG--SSF------- 82 (276)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhh----h--CCHHHHHHHHHHHHHHCCCCEE-----EECCCC--CCH-------
Confidence 4577889999999999999999653211 0 01000110 011110 001111 222
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHH-hCCc-ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVRE-IGAE-RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~-vg~~-~i~vrls~~~ 236 (367)
+..++|.++||+.|-+.+.+ -+++...+.++++++-.++. +.=. .|| ++...+
T Consensus 83 ----~~i~~ai~~GftSVMiD~S~--------------------l~~eeNi~~t~~vv~~ah~~gv~VEaElG-~i~g~e 137 (276)
T cd00947 83 ----ELIKRAIRAGFSSVMIDGSH--------------------LPFEENVAKTKEVVELAHAYGVSVEAELG-RIGGEE 137 (276)
T ss_pred ----HHHHHHHHhCCCEEEeCCCC--------------------CCHHHHHHHHHHHHHHHHHcCCeEEEEEe-eecCcc
Confidence 23346678999999988755 14778899999999999987 1101 233 222222
Q ss_pred ccc--ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc-hh--hHHHHHHHHHhcCCcEEEeCC--CCHHHHHH
Q 017733 237 ECA--EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK-SE--TQRSLLSMRRAFEGTFIAAGG--YSRDEGNK 309 (367)
Q Consensus 237 ~~~--~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~-~~--~~~~~~~ir~~~~~pvi~~Gg--it~~~a~~ 309 (367)
+.. .......++++.+|++ +.|+|++-++-++.+..+.. .+ +.+.++.|++.+++|++.=|+ +..++..+
T Consensus 138 ~~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ 214 (276)
T cd00947 138 DGVVGDEGLLTDPEEAEEFVE---ETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRK 214 (276)
T ss_pred CCcccccccCCCHHHHHHHHH---HHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 110 0011234677777765 46899999988887655533 22 456789999999999766554 57888999
Q ss_pred HHHcCCCcEEcccHHHH
Q 017733 310 AVAANYTDLVAFGRLFL 326 (367)
Q Consensus 310 ~L~~G~~D~V~~gR~~l 326 (367)
+++.| +-=|=++..+.
T Consensus 215 ai~~G-i~KiNi~T~l~ 230 (276)
T cd00947 215 AIKLG-VCKININTDLR 230 (276)
T ss_pred HHHcC-CeEEEeChHHH
Confidence 99999 55566666653
No 225
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.25 E-value=0.017 Score=52.52 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=47.9
Q ss_pred hcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 259 KFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 259 ~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
++|+||+-+... ......+++.++..++ +|++..||++.+.+.++++.| +|.|+++..++.
T Consensus 127 ~~Gad~vklFPa-------~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aG-a~~vavgs~l~~ 188 (213)
T PRK06552 127 EAGSEIVKLFPG-------STLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAG-ADAVGIGGELNK 188 (213)
T ss_pred HcCCCEEEECCc-------ccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCC-CcEEEEchHHhC
Confidence 467777765210 1112466888888887 899999999999999999999 999999999964
No 226
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0095 Score=53.80 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
.+.+..+...++|.|-+-+..--| +|. | ..-|-.++++++|+... .++-|=|-.
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDg----hFV-P---------------NiTfGp~~v~~l~~~t~-~p~DvHLMV----- 70 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDG----HFV-P---------------NITFGPPVVKALRKITD-LPLDVHLMV----- 70 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCC----CcC-C---------------CcccCHHHHHHHhhcCC-CceEEEEec-----
Confidence 577788888889999887654332 233 2 23466899999999542 344443322
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCc-c-------------------ccC-----------------------
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRM-I-------------------QLT----------------------- 276 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~-~-------------------~~~----------------------- 276 (367)
.++ ...++.+.++|+|+|.+|.-.. . .+.
T Consensus 71 ----~~p----~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 71 ----ENP----DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred ----CCH----HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 112 2356667778888887763100 0 000
Q ss_pred ---Cc---hhhHHHHHHHHHhcC---Cc-EEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 277 ---DK---SETQRSLLSMRRAFE---GT-FIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 277 ---~~---~~~~~~~~~ir~~~~---~p-vi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
+. +...+-++.+|+..+ .. +-+-||++.+.+.++.++| +|++.+|++++.++|+..+++.
T Consensus 143 GfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AG-ad~~VaGSalF~~~d~~~~i~~ 212 (220)
T COG0036 143 GFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAG-ADVFVAGSALFGADDYKATIRE 212 (220)
T ss_pred CCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcC-CCEEEEEEEEeCCccHHHHHHH
Confidence 00 011123445555554 23 4455999999999999999 9999999999999997777664
No 227
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.24 E-value=0.034 Score=53.93 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=113.8
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCcc-CCCCCCCCCCCCc---ccC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRV-SNYGLQPNGEAPI---SST-SKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~-~~~~~~~~~~~~~---~ps-~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
.+..+-+++++.+.++++++|+...-.. ....+...-...+ +++ ++-+. ..+. .+.
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLH-------LDHg--~~~---------- 88 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLH-------QDHG--NSP---------- 88 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE-------CCCC--CCH----------
Confidence 4678889999999999999999653110 0000000000000 110 11111 1111 122
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCc---
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYA--- 236 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~--- 236 (367)
+.+++|.++||+.|-+.+.|- . +++-.-+++...+.+.++++..+..-=.- .|+. +...+
T Consensus 89 -e~i~~Ai~~GFtSVMiDgS~l-----------~--~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~-igg~e~~~ 153 (347)
T PRK13399 89 -ATCQSAIRSGFTSVMMDGSLL-----------A--DGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGC-LGSLETGE 153 (347)
T ss_pred -HHHHHHHhcCCCEEEEeCCCC-----------C--CCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeee-ccCccccc
Confidence 235788889999999998761 1 13334468889999999999877652111 2331 12111
Q ss_pred ----cc-ccc------CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc---h----hhHHHHHHHHHhc-CCcEE
Q 017733 237 ----EC-AEA------VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK---S----ETQRSLLSMRRAF-EGTFI 297 (367)
Q Consensus 237 ----~~-~~~------~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~---~----~~~~~~~~ir~~~-~~pvi 297 (367)
+. ... ....+++++.+|++ +.|||.+-++-++.+..+.. + -+.+.++.|++.+ ++|++
T Consensus 154 ~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLV 230 (347)
T PRK13399 154 AGEEDGVGAEGKLSHDQMLTDPDQAVDFVQ---RTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLV 230 (347)
T ss_pred ccccCCccccccccccccCCCHHHHHHHHH---HHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEE
Confidence 10 000 01234677777765 46999998888776554432 1 2345788999999 69977
Q ss_pred EeCC--CC---------------------HHHHHHHHHcCCCcEEcccH
Q 017733 298 AAGG--YS---------------------RDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 298 ~~Gg--it---------------------~~~a~~~L~~G~~D~V~~gR 323 (367)
.=|+ +. .++..++++.|.+ =|=++.
T Consensus 231 LHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~-KINi~T 278 (347)
T PRK13399 231 MHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVR-KVNIDT 278 (347)
T ss_pred EeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCe-EEEeCh
Confidence 6554 33 4789999999943 344443
No 228
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.21 E-value=0.0052 Score=57.00 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=85.5
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCC-Ccc-c
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSP-YAE-C 238 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~-~~~-~ 238 (367)
+.++...++|++.|-|...- . +......+.++++.+..|+. .+++.... .+. +
T Consensus 88 e~v~~~l~aGa~rVvIGS~a-----------v------------~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~ 144 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWL-----------F------------TKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRW 144 (253)
T ss_pred HHHHHHHHcCCCEEEECcHH-----------H------------hCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcE
Confidence 56777888999999985422 0 11112267888999999866 34554431 011 0
Q ss_pred c--ccCCCC-hHHHHH-HHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHH--H
Q 017733 239 A--EAVDSN-PEALGL-YMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKA--V 311 (367)
Q Consensus 239 ~--~~~~~~-~~~~~~-~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~--L 311 (367)
. -.+|.. +.-+.. ++++.+++. +..|-++.-....+. ..++.+.++.+.+.+++||+++||+ +.++..++ +
T Consensus 145 ~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl-~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~ 222 (253)
T TIGR02129 145 IVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLC-KGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDEL 222 (253)
T ss_pred EEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcc-ccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHh
Confidence 0 011111 111233 677778777 766655432222222 2346678889999999999999999 89999877 4
Q ss_pred HcCCCcEEcccHHHHh
Q 017733 312 AANYTDLVAFGRLFLA 327 (367)
Q Consensus 312 ~~G~~D~V~~gR~~la 327 (367)
..|..+ +.+|++++.
T Consensus 223 ~~g~~~-aIvG~Alf~ 237 (253)
T TIGR02129 223 SKGKVD-LTIGSALDI 237 (253)
T ss_pred cCCCCc-EEeeehHHH
Confidence 445344 888988875
No 229
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.21 E-value=0.035 Score=53.80 Aligned_cols=202 Identities=13% Similarity=0.069 Sum_probs=115.1
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCcc-CCCCCCCCCCCCcc--cCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRV-SNYGLQPNGEAPIS--STSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRL 163 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~-~~~~~~~~~~~~~~--ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~ 163 (367)
.+.++-+++++.+.++++++|+...-.. ........-...++ .+.+|.. +...+. .+. +
T Consensus 26 ~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPVa-----lHLDHg--~~~-----------e 87 (347)
T TIGR01521 26 MEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVV-----MHQDHG--NSP-----------A 87 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEE-----EECCCC--CCH-----------H
Confidence 4678889999999999999999653110 00000000000000 0001110 001111 121 3
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCc-----
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYA----- 236 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~----- 236 (367)
..++|.++||+.|-+.+.+ .+ .++-.-+++...+.+.++++-.+..-=.- .|+ ++...+
T Consensus 88 ~i~~Ai~~GFtSVMiDgS~-----------l~--~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG-~igg~e~~~~g 153 (347)
T TIGR01521 88 TCQRAIQLGFTSVMMDGSL-----------RE--DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELG-CLGSLETGMGE 153 (347)
T ss_pred HHHHHHHcCCCEEeecCcC-----------Cc--ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee-ecccccccccc
Confidence 4677889999999998866 11 13334578888999999999888742111 222 122111
Q ss_pred --cc---cc----cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc---h----hhHHHHHHHHHhc-CCcEEEe
Q 017733 237 --EC---AE----AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK---S----ETQRSLLSMRRAF-EGTFIAA 299 (367)
Q Consensus 237 --~~---~~----~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~---~----~~~~~~~~ir~~~-~~pvi~~ 299 (367)
+. .+ ......++++.+|++ +.|||++-++-++.+..+.. + -+.+.++.|++.+ ++|++.=
T Consensus 154 ~~d~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLH 230 (347)
T TIGR01521 154 AEDGHGFEGVLDHSQLLTDPEEAADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMH 230 (347)
T ss_pred cccCcccccccchhhcCCCHHHHHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEe
Confidence 00 00 001234566777765 46899999988876555432 2 3446688999999 6997766
Q ss_pred CCC--C---------------------HHHHHHHHHcCCCcEEcccHH
Q 017733 300 GGY--S---------------------RDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 300 Ggi--t---------------------~~~a~~~L~~G~~D~V~~gR~ 324 (367)
|+= . .++..++++.|. -=|=++..
T Consensus 231 GgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI-~KVNi~Td 277 (347)
T TIGR01521 231 GSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGV-RKVNIDTD 277 (347)
T ss_pred CCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCC-eeEEeChH
Confidence 553 3 478999999994 33444443
No 230
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.21 E-value=0.0026 Score=57.32 Aligned_cols=78 Identities=18% Similarity=0.088 Sum_probs=56.8
Q ss_pred hhhcCccEEEEecCCccc--cCCch-hhHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchH
Q 017733 257 LNKFKLLYLHVIEPRMIQ--LTDKS-ETQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLP 332 (367)
Q Consensus 257 L~~~Gvd~i~v~~~~~~~--~~~~~-~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~ 332 (367)
..+.|+||+-++.-.... +...+ .....++.+++..+ .||++.||++++++.++++.| +|+|.+++.+...++..
T Consensus 120 a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~G-a~gv~~gs~i~~~~d~~ 198 (212)
T PRK00043 120 ALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAG-ADGVAVVSAITGAEDPE 198 (212)
T ss_pred HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeHHhhcCCCHH
Confidence 346799999875211111 11111 12567788888887 999999999999999999999 99999999999887754
Q ss_pred HHH
Q 017733 333 KRF 335 (367)
Q Consensus 333 ~k~ 335 (367)
..+
T Consensus 199 ~~~ 201 (212)
T PRK00043 199 AAA 201 (212)
T ss_pred HHH
Confidence 443
No 231
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0087 Score=54.15 Aligned_cols=145 Identities=15% Similarity=0.113 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcce--EE--EeCCC----
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERV--GM--RLSPY---- 235 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i--~v--rls~~---- 235 (367)
-+++...+|.|-|-||.+.= . -.+.|+++-+..|.-.| .| |-.++
T Consensus 88 D~~~ll~aGADKVSINsaAv----------~-----------------~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~ 140 (256)
T COG0107 88 DARKLLRAGADKVSINSAAV----------K-----------------DPELITEAADRFGSQCIVVAIDAKRVPDGENG 140 (256)
T ss_pred HHHHHHHcCCCeeeeChhHh----------c-----------------ChHHHHHHHHHhCCceEEEEEEeeeccCCCCC
Confidence 34467789999999997640 1 14578888888887633 33 22210
Q ss_pred --ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHH
Q 017733 236 --AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVA 312 (367)
Q Consensus 236 --~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~ 312 (367)
+-+.-.+...+--++.+.+++.++.|+--|-+..-..... ........++.+++.+++|||++||. +++.+.+++.
T Consensus 141 ~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGt-k~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~ 219 (256)
T COG0107 141 WYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGT-KAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFT 219 (256)
T ss_pred cEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccc-ccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHH
Confidence 0011011112223467889999999977665543222111 12235678999999999999999999 8999999999
Q ss_pred cCCCcEEcccHHHHhCCchHHHHH
Q 017733 313 ANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 313 ~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
.|.+|.+..|.-|--.---+..++
T Consensus 220 ~~~adAaLAAsiFH~~~~~i~evK 243 (256)
T COG0107 220 EGKADAALAASIFHFGEITIGEVK 243 (256)
T ss_pred hcCccHHHhhhhhhcCcccHHHHH
Confidence 999998877766554443344443
No 232
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.18 E-value=0.012 Score=54.56 Aligned_cols=140 Identities=16% Similarity=0.059 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCc---c
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYA---E 237 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~---~ 237 (367)
.+.++++.++|+|-|-|.... - .. .++++.+-+..|.. .+++....+. .
T Consensus 86 ~e~~~~~l~~Ga~~vvigT~a--------------~---------~~----p~~~~~~~~~~g~~ivvslD~k~~g~~~~ 138 (243)
T TIGR01919 86 DSSLRAALTGGRARVNGGTAA--------------L---------EN----PWWAAAVIRYGGDIVAVGLDVLEDGEWHT 138 (243)
T ss_pred HHHHHHHHHcCCCEEEECchh--------------h---------CC----HHHHHHHHHHccccEEEEEEEecCCceEE
Confidence 456777778999998765432 0 11 33444555555544 3555543111 1
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHH--HHcC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKA--VAAN 314 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~--L~~G 314 (367)
....++..+.....++++++++.|+..+-++.-....... .++...++.+++.+++||+++||+ +.++.+++ +...
T Consensus 139 v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~-G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~ 217 (243)
T TIGR01919 139 LGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSG-GPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEG 217 (243)
T ss_pred EECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCC-CcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccC
Confidence 1111222222335678889999998766554332222222 245677888999989999999999 78998876 4333
Q ss_pred CCcEEcccHHHHhCC
Q 017733 315 YTDLVAFGRLFLANP 329 (367)
Q Consensus 315 ~~D~V~~gR~~ladP 329 (367)
.+|.|.+|+++...-
T Consensus 218 Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 218 GVSVAIGGKLLYARF 232 (243)
T ss_pred CeeEEEEhHHHHcCC
Confidence 499999999987764
No 233
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.18 E-value=0.039 Score=53.48 Aligned_cols=200 Identities=13% Similarity=0.071 Sum_probs=114.0
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCc-cCCCCCCCCCCCCc---ccC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGR-VSNYGLQPNGEAPI---SST-SKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr-~~~~~~~~~~~~~~---~ps-~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
.+.++-+++++.+.++++++|+...-. .....+...-.... +++ ++.+. ..+. -+.+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValH-------LDHg--~~~e--------- 89 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMH-------QDHG--NSPA--------- 89 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEE-------CCCC--CCHH---------
Confidence 467788999999999999999965311 01000000000000 110 11111 1111 1222
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceEEEeCCCccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVGMRLSPYAEC 238 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~vrls~~~~~ 238 (367)
.+++|.++||+.|-+.+.|- |-.|.+. ++|...+.+.++++..+.. |-. .|+ ++...++.
T Consensus 90 --~i~~ai~~GftSVMiDgS~l--------~~~~~~~-----p~eENI~~Tkevve~Ah~~-Gv~VEaELG-~vgg~e~~ 152 (347)
T PRK09196 90 --TCQRAIQLGFTSVMMDGSLK--------ADGKTPA-----SYEYNVDVTRKVVEMAHAC-GVSVEGELG-CLGSLETG 152 (347)
T ss_pred --HHHHHHHcCCCEEEecCCCC--------cccCCCC-----CHHHHHHHHHHHHHHHHHc-CCeEEEEEe-eccCcccc
Confidence 36678899999999988761 1112222 5788899999999998654 321 233 22222110
Q ss_pred -----ccc---------CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc---h----hhHHHHHHHHHhc-CCcE
Q 017733 239 -----AEA---------VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK---S----ETQRSLLSMRRAF-EGTF 296 (367)
Q Consensus 239 -----~~~---------~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~---~----~~~~~~~~ir~~~-~~pv 296 (367)
.+. .....++++.+|++ +.|+|++-++-++....+.. + -+.+.++.|++.+ ++|+
T Consensus 153 ~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPL 229 (347)
T PRK09196 153 MGGEEDGHGAEGKLSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHL 229 (347)
T ss_pred ccccccCcccccccchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCE
Confidence 000 00234666777764 57899999887776554432 2 2445788999999 6997
Q ss_pred EEeCC--C---------------------CHHHHHHHHHcCCCcEEcccHHH
Q 017733 297 IAAGG--Y---------------------SRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 297 i~~Gg--i---------------------t~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
+.=|+ + ..++..++++.| +-=|=+++.+
T Consensus 230 VLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~G-I~KINi~Tdl 280 (347)
T PRK09196 230 VMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHG-VRKVNIDTDL 280 (347)
T ss_pred EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC-CceEEeChHH
Confidence 76554 4 457889999999 4445554443
No 234
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=97.14 E-value=0.011 Score=57.17 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+++++.|+.+.+.||..++|+.+. + .-.+.|++||++++ + +.+|+-++.
T Consensus 131 ~~~~~~~~~~~~~G~~~~KlKv~~----------------~-----------~d~~~v~avr~~~~-~-~~l~vDaN~-- 179 (321)
T PRK15129 131 EQMANSASALWQAGAKLLKVKLDN----------------H-----------LISERMVAIRSAVP-D-ATLIVDANE-- 179 (321)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC----------------c-----------hHHHHHHHHHHhCC-C-CeEEEECCC--
Confidence 445667777778999999998521 0 12488999999995 4 334443321
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEE
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLH 266 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~ 266 (367)
..+.+++..+++.|++.++.||+
T Consensus 180 -----~w~~~~A~~~~~~l~~~~i~~iE 202 (321)
T PRK15129 180 -----SWRAEGLAARCQLLADLGVAMLE 202 (321)
T ss_pred -----CCCHHHHHHHHHHHHhcCceEEE
Confidence 33567888999999999999988
No 235
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.14 E-value=0.0022 Score=65.91 Aligned_cols=87 Identities=8% Similarity=-0.034 Sum_probs=69.5
Q ss_pred HHHHHHhhhcCccEEEEecCCcc--ccCCchhhHHHHHHHHHhcCCcEEEeCCC-CH-----------HHHHHHHHcCCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMI--QLTDKSETQRSLLSMRRAFEGTFIAAGGY-SR-----------DEGNKAVAANYT 316 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~--~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~-----------~~a~~~L~~G~~ 316 (367)
.++++...+.|+|.||+..-+.. .........+.++++.+.+.+||..+||| |. ++++++|..| +
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G-a 348 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG-A 348 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC-C
Confidence 45888899999999998654321 11223335677888999999999999999 65 7799999999 9
Q ss_pred cEEcccHHHHhCC------------chHHHHHhC
Q 017733 317 DLVAFGRLFLANP------------DLPKRFELN 338 (367)
Q Consensus 317 D~V~~gR~~ladP------------~l~~k~~~g 338 (367)
|-|+++..++.|| +|+.++.+.
T Consensus 349 dkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 349 DKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred CEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 9999999999975 999888764
No 236
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.13 E-value=0.017 Score=53.55 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC--c-ceEEEeCCC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA--E-RVGMRLSPY 235 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~--~-~i~vrls~~ 235 (367)
++..+.+++..++|++||.|--.. .++|....|+...=......+.|+++|++... + +|..|.-..
T Consensus 84 ~~~~~~v~~~~~~G~~gv~iED~~-----------~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~ 152 (243)
T cd00377 84 LNVARTVRELEEAGAAGIHIEDQV-----------GPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDAL 152 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC-----------CCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCch
Confidence 356777888888999999995543 34555444543222344556677777777653 4 677776442
Q ss_pred ccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCH--HHHHHHHHc
Q 017733 236 AECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSR--DEGNKAVAA 313 (367)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~--~~a~~~L~~ 313 (367)
. .+....+++++-++...++|+|.+-+..+. ..+.++.+.+..+.||+.+-.-.. -..+++-+-
T Consensus 153 ~-----~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~---------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~l 218 (243)
T cd00377 153 L-----AGEEGLDEAIERAKAYAEAGADGIFVEGLK---------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAEL 218 (243)
T ss_pred h-----ccCCCHHHHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHC
Confidence 1 011357889999999999999988775331 346677788888899776532111 345555566
Q ss_pred CCCcEEcccHHHH
Q 017733 314 NYTDLVAFGRLFL 326 (367)
Q Consensus 314 G~~D~V~~gR~~l 326 (367)
| +.+|.++-.++
T Consensus 219 G-~~~v~~~~~~~ 230 (243)
T cd00377 219 G-VRRVSYGLALL 230 (243)
T ss_pred C-CeEEEEChHHH
Confidence 7 88998876554
No 237
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.13 E-value=0.017 Score=53.22 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=57.6
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
.++++.+++. ++.+++..-...... ..++...++.+.+.+++||+++||+ +++++++++..| +|.|.+|+++...
T Consensus 149 ~~~~~~~~~~-~~~li~~di~~~G~~-~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~vivGsal~~g 224 (233)
T cd04723 149 EELLRRLAKW-PEELIVLDIDRVGSG-QGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLG-ASGALVASALHDG 224 (233)
T ss_pred HHHHHHHHHh-CCeEEEEEcCccccC-CCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEehHHHcC
Confidence 3567777777 777777543322111 2345667788888889999999999 899999999998 9999999998765
No 238
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.12 E-value=0.013 Score=53.25 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHH---------------------HHHHhhhcCccEEEE
Q 017733 209 CRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLY---------------------MAKALNKFKLLYLHV 267 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~---------------------l~~~L~~~Gvd~i~v 267 (367)
.+-+..+-+--|+..+.++|.+.+-+++.+- ..|+. ++.+ +|++|++.|+..+--
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi~D~~~L---~PD~~-etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMP 150 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVIGDDKTL---LPDPI-ETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMP 150 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--BS-TTT-----B-HH-HHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc---CCChh-HHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEe
Confidence 3455666777777777777777766654321 12222 2333 455555555544332
Q ss_pred ecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCch
Q 017733 268 IEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDL 331 (367)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l 331 (367)
-..... ....-.+.+.++.|++.+++|||.-.|+ +|.++.++++-| +|.|.+..+...-.|-
T Consensus 151 lgsPIG-Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvNTAiA~A~dP 213 (247)
T PF05690_consen 151 LGSPIG-SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG-ADAVLVNTAIAKAKDP 213 (247)
T ss_dssp BSSSTT-T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT--SEEEESHHHHTSSSH
T ss_pred cccccc-cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC-CceeehhhHHhccCCH
Confidence 111111 1112235678899999999999999999 999999999999 9999999988765553
No 239
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.11 E-value=0.023 Score=53.98 Aligned_cols=140 Identities=18% Similarity=0.163 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHh-CCc-ceEEEeCCCccc-
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREI-GAE-RVGMRLSPYAEC- 238 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~v-g~~-~i~vrls~~~~~- 238 (367)
.+..++|.++||+.|-+.+.+ -+++...+.+.++++-.++.- .=. .|| ++...++.
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vv~~ah~~gv~VEaElG-~i~g~ed~~ 144 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSA--------------------LPFEENIAITREVVEYAHAYGVSVEAELG-HIGGKEDGI 144 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TT--------------------S-HHHHHHHHHHHHHHHHHTT-EEEEEES-BSSSSCTTC
T ss_pred HHHHHHHHHhCcccccccCCc--------------------CCHHHHHHHHHHHHHhhhhhCCEEEEEee-eeeccCCCc
Confidence 445567777899999887754 357788999999999998852 100 122 12222211
Q ss_pred cc----cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc--hhh--HHHHHHHHHhc-CCcEEEeCC--CCHHHH
Q 017733 239 AE----AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK--SET--QRSLLSMRRAF-EGTFIAAGG--YSRDEG 307 (367)
Q Consensus 239 ~~----~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~--~~~--~~~~~~ir~~~-~~pvi~~Gg--it~~~a 307 (367)
.. ......++++.+|++ +.|+|++-++-++.+..+.. .+. .+.++.|++.+ ++|++.=|+ +..++.
T Consensus 145 ~~~~~~~~~~TdP~~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~ 221 (287)
T PF01116_consen 145 ESEEETESLYTDPEEAKEFVE---ETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQI 221 (287)
T ss_dssp SSSTT-TTCSSSHHHHHHHHH---HHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHH
T ss_pred cccccccccccCHHHHHHHHH---HhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHH
Confidence 11 111234666766654 57999999998887666554 443 56789999999 999887665 578899
Q ss_pred HHHHHcCCCcEEcccHHHH
Q 017733 308 NKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 308 ~~~L~~G~~D~V~~gR~~l 326 (367)
+++++.| +-=|=++..+.
T Consensus 222 ~~ai~~G-i~KiNi~T~~~ 239 (287)
T PF01116_consen 222 RKAIKNG-ISKINIGTELR 239 (287)
T ss_dssp HHHHHTT-EEEEEESHHHH
T ss_pred HHHHHcC-ceEEEEehHHH
Confidence 9999999 55566665544
No 240
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.10 E-value=0.012 Score=54.93 Aligned_cols=139 Identities=13% Similarity=-0.015 Sum_probs=87.3
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeC--CCc-c
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLS--PYA-E 237 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls--~~~-~ 237 (367)
+.++++.++|+|-|-|.... ..| ..+-.++++.+-+..|+. .+++... ... .
T Consensus 95 e~i~~~l~~Ga~rViigT~A----------v~~-------------~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~ 151 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYV----------FRD-------------GQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYY 151 (262)
T ss_pred HHHHHHHHcCCCEEEEchHH----------HhC-------------CCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEE
Confidence 67788889999999986543 011 112256777777777766 3444432 110 0
Q ss_pred ccccCCCC-hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcC-
Q 017733 238 CAEAVDSN-PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAAN- 314 (367)
Q Consensus 238 ~~~~~~~~-~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G- 314 (367)
..-.+|.. +.-...+++..+.+.|+..+-++.-....+. ..++...++.+.+.+++||+++||+ +.++..++.+.|
T Consensus 152 Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl-~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~ 230 (262)
T PLN02446 152 VVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKR-LGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGG 230 (262)
T ss_pred EEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcc-cCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 00111211 1122345666777778876655432222111 2235677888999999999999999 899999988875
Q ss_pred CCcEEcccHHH
Q 017733 315 YTDLVAFGRLF 325 (367)
Q Consensus 315 ~~D~V~~gR~~ 325 (367)
.+..|.+||++
T Consensus 231 g~~gvIvGkAl 241 (262)
T PLN02446 231 GRVDVTVGSAL 241 (262)
T ss_pred CCEEEEEEeeH
Confidence 36779999998
No 241
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.04 E-value=0.0026 Score=58.19 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=64.4
Q ss_pred HHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHH--cCCCcEEcccHHHHhC
Q 017733 252 YMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVA--ANYTDLVAFGRLFLAN 328 (367)
Q Consensus 252 ~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~--~G~~D~V~~gR~~lad 328 (367)
++++.+.+.|+|++|+..-... ...+.+.+.++.+.+.+ |+...||+ |.+++++++. .+ +|-|.++...+.|
T Consensus 40 ~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~~--~v~vgGGirs~e~~~~~~~~l~~-a~rvvigT~a~~~ 114 (221)
T TIGR00734 40 DAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKRV--ELIADCGVRSPEDLETLPFTLEF-ASRVVVATETLDI 114 (221)
T ss_pred HHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhhC--cEEEcCccCCHHHHHHHHhhhcc-ceEEeecChhhCC
Confidence 4777788899999999754432 23445667788888764 89999999 8999999975 46 9999999999999
Q ss_pred CchHHHHH
Q 017733 329 PDLPKRFE 336 (367)
Q Consensus 329 P~l~~k~~ 336 (367)
|++..++.
T Consensus 115 p~~l~~~~ 122 (221)
T TIGR00734 115 TELLRECY 122 (221)
T ss_pred HHHHHHhh
Confidence 99999875
No 242
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.04 E-value=0.018 Score=52.23 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=41.0
Q ss_pred HHHHhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 287 SMRRAFE-GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 287 ~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
.+++..+ .+++.+||| ++++|.++.++| +|.|..|.-.-.||+-..++..
T Consensus 184 ~v~~v~~~~~LivGGGIrs~E~A~~~a~ag-AD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 184 MVSRVLSDTPLIVGGGIRSPEQAREMAEAG-ADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred HHHHhhccceEEEcCCcCCHHHHHHHHHcC-CCEEEECceeecCHHHHHHHHH
Confidence 3444443 389999999 899999999999 9999999999999977666554
No 243
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.02 E-value=0.0051 Score=56.48 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=49.7
Q ss_pred chhhHHHHHHHHHhcCC-cEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc-hHHHHH
Q 017733 278 KSETQRSLLSMRRAFEG-TFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD-LPKRFE 336 (367)
Q Consensus 278 ~~~~~~~~~~ir~~~~~-pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~-l~~k~~ 336 (367)
.+.+...++.+++.++. ||+.+||+ +++++++++..| +|.|.+|..+..||+ .++.++
T Consensus 168 ~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G-AD~VVVGSai~~d~~~~~~~~~ 228 (232)
T PRK04169 168 DPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG-ADTIVVGNIIEEDPKKTVKAIK 228 (232)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEChHHhhCHHHHHHHHH
Confidence 34456788999999988 99999999 899999999999 999999999999998 444443
No 244
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=97.01 E-value=0.013 Score=57.03 Aligned_cols=127 Identities=19% Similarity=0.160 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeC
Q 017733 156 KIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLS 233 (367)
Q Consensus 156 ~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls 233 (367)
.+|+.|++ ++.+-|.|.+.|.-+- |..|-+..-++++++.-+.. .+++-+|
T Consensus 98 DvVe~Fv~---ka~~nGidvfRiFDAl------------------------ND~RNl~~ai~a~kk~G~h~q~~i~YT~s 150 (472)
T COG5016 98 DVVEKFVE---KAAENGIDVFRIFDAL------------------------NDVRNLKTAIKAAKKHGAHVQGTISYTTS 150 (472)
T ss_pred HHHHHHHH---HHHhcCCcEEEechhc------------------------cchhHHHHHHHHHHhcCceeEEEEEeccC
Confidence 56777765 5568999999986442 34555666777777765532 5788888
Q ss_pred CCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEE----eCCCCHHHHHH
Q 017733 234 PYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIA----AGGYSRDEGNK 309 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~----~Ggit~~~a~~ 309 (367)
|. -+.+.+.+++++|.+.|+|.|.+-.-. ..-....-.+..+.+|+.+++||.. +.|++.-...+
T Consensus 151 Pv---------Ht~e~yv~~akel~~~g~DSIciKDma--GlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylk 219 (472)
T COG5016 151 PV---------HTLEYYVELAKELLEMGVDSICIKDMA--GLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLK 219 (472)
T ss_pred Cc---------ccHHHHHHHHHHHHHcCCCEEEeeccc--ccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHH
Confidence 83 257889999999999999999875321 1112222446788999999998664 34555666789
Q ss_pred HHHcCCCcEEcc
Q 017733 310 AVAANYTDLVAF 321 (367)
Q Consensus 310 ~L~~G~~D~V~~ 321 (367)
++++| +|+|-.
T Consensus 220 AvEAG-vD~iDT 230 (472)
T COG5016 220 AVEAG-VDGIDT 230 (472)
T ss_pred HHHhC-cchhhh
Confidence 99999 887744
No 245
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.00 E-value=0.039 Score=50.43 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=54.9
Q ss_pred HhhhcCccEEEEecCC-cccc-C---Cchh-hHHHHHHHHHhc-CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 256 ALNKFKLLYLHVIEPR-MIQL-T---DKSE-TQRSLLSMRRAF-EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 256 ~L~~~Gvd~i~v~~~~-~~~~-~---~~~~-~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
.+.+.+.|+|.+-..+ .... . ..+. .....+.+|+.. +.||+..||+ ++++++.+++.| +|.|.+|++++.
T Consensus 129 ~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g-adGvlVGsa~l~ 207 (223)
T PRK04302 129 AAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELG-ADGVLLASGVVK 207 (223)
T ss_pred HHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC-CCEEEEehHHhC
Confidence 3456678888763322 1110 1 1111 223456677754 5899999999 799999999888 999999999998
Q ss_pred CCchHHHHH
Q 017733 328 NPDLPKRFE 336 (367)
Q Consensus 328 dP~l~~k~~ 336 (367)
-+++...++
T Consensus 208 ~~~~~~~~~ 216 (223)
T PRK04302 208 AKDPEAALR 216 (223)
T ss_pred CcCHHHHHH
Confidence 888866654
No 246
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.025 Score=53.49 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=95.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHh---HHHHHHHHHHHHH-h
Q 017733 148 PLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRC---RFALEVVEAVVRE-I 223 (367)
Q Consensus 148 ~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~---r~~~eii~aiR~~-v 223 (367)
.||.+++... ++..+..-+. .|-.+||..| |.+.-- -+++.+. +++.+++.+--+. .
T Consensus 189 k~s~d~~~dy----~~gV~~~g~~-adylviNvSs---------PNtpGl-----r~lq~k~~L~~ll~~v~~a~~~~~~ 249 (398)
T KOG1436|consen 189 KTSEDAILDY----VEGVRVFGPF-ADYLVINVSS---------PNTPGL-----RSLQKKSDLRKLLTKVVQARDKLPL 249 (398)
T ss_pred cCCcchHHHH----HHHhhhcccc-cceEEEeccC---------CCCcch-----hhhhhHHHHHHHHHHHHHHHhcccc
Confidence 4677776544 4444433221 4566777665 443211 1333333 2333443332222 1
Q ss_pred CCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc---------------CCchhhH---HH
Q 017733 224 GAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL---------------TDKSETQ---RS 284 (367)
Q Consensus 224 g~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~---------------~~~~~~~---~~ 284 (367)
+.. ++.+++.++ ...++..+++..+.+..+|-+-++.-+...+ .+.+-.. ..
T Consensus 250 ~~~~pvl~kiapD---------L~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~ 320 (398)
T KOG1436|consen 250 GKKPPVLVKIAPD---------LSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNT 320 (398)
T ss_pred CCCCceEEEeccc---------hhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHH
Confidence 333 799999983 2345555666666667777665543322211 0111122 23
Q ss_pred HHHHHHhc--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC-CchHHHHHhC
Q 017733 285 LLSMRRAF--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN-PDLPKRFELN 338 (367)
Q Consensus 285 ~~~ir~~~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad-P~l~~k~~~g 338 (367)
++.+...+ ++|||++||+ +-.||-+.|..| +.+|.+..+|..+ |-++.|++..
T Consensus 321 vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG-ASlvQlyTal~yeGp~i~~kIk~E 377 (398)
T KOG1436|consen 321 VRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG-ASLVQLYTALVYEGPAIIEKIKRE 377 (398)
T ss_pred HHHHHHhccCCCceEeecCccccHhHHHHHhcC-chHHHHHHHHhhcCchhHHHHHHH
Confidence 44555555 4799999999 789999999999 9999999999765 7888888764
No 247
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.97 E-value=0.051 Score=50.61 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 280 ETQRSLLSMRRAF-EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 280 ~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
..+..++.+|+.. +.|++.+||+|++...++++. +|.|.++..+=.
T Consensus 186 ~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~--adGviVgS~~K~ 232 (257)
T TIGR00259 186 VDLELLKLAKETVKDTPVLAGSGVNLENVEELLSI--ADGVIVATTIKK 232 (257)
T ss_pred CCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhh--CCEEEECCCccc
Confidence 3456677888865 579999999999999999986 999999998753
No 248
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.94 E-value=0.016 Score=59.75 Aligned_cols=150 Identities=12% Similarity=0.073 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCc---
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYA--- 236 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~--- 236 (367)
.+.|+++.++|+|-|-|+.+-=.=..+|+.. +-.. -.++|+++-+..|.. .++|...-..
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~-----------~~~~----~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~ 401 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIAS-----------GVKT----GKTSIEQISRVYGNQAVVVSIDPRRVYVKD 401 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhcc-----------cccc----CHHHHHHHHHHcCCceEEEEEecCcCcccC
Confidence 3567888899999999987541111122211 1111 146677777777765 2444432100
Q ss_pred ----------------c------cc--ccCC-CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 237 ----------------E------CA--EAVD-SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 237 ----------------~------~~--~~~~-~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
. |. -.+| ..+.-++.++++.+++.|+.-|-++.-...... ...+.+.++.+++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~-~G~d~~l~~~v~~~ 480 (538)
T PLN02617 402 PSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQG-KGFDIELVKLVSDA 480 (538)
T ss_pred ccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccc-cCcCHHHHHHHHhh
Confidence 0 00 0011 111223567899999999886655432222111 23356788899999
Q ss_pred cCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 292 FEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 292 ~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
+++|||++||. +++++.+++..+.+|.+..|.-+--
T Consensus 481 ~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 481 VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 99999999999 8999999999877898887755444
No 249
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.94 E-value=0.12 Score=49.10 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhC-Cc-ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIG-AE-RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg-~~-~i~vrls~~~ 236 (367)
.+..+.+++..++|..||-|-=.. .+||+..++|.-.-......+-|+++|++.. ++ .|.-|.....
T Consensus 88 ~~v~~tv~~~~~aG~agi~IEDq~-----------~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~ 156 (285)
T TIGR02317 88 FNVARTVREMEDAGAAAVHIEDQV-----------LPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARA 156 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCccc
Confidence 356778888899999999885422 3567766665322223345556666676653 33 4556776531
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe---CCCCH-HHHHHHHH
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA---GGYSR-DEGNKAVA 312 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~---Ggit~-~~a~~~L~ 312 (367)
....+++++-++...++|+|.+-+... .....++.+.+.++.|++++ ++-+| -..+++-+
T Consensus 157 -------~~g~deAI~Ra~ay~~AGAD~vfi~g~---------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~ 220 (285)
T TIGR02317 157 -------VEGLDAAIERAKAYVEAGADMIFPEAL---------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELRE 220 (285)
T ss_pred -------ccCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH
Confidence 123688888899999999998876422 12455778888888887432 34344 25677777
Q ss_pred cCCCcEEcccHHHHh
Q 017733 313 ANYTDLVAFGRLFLA 327 (367)
Q Consensus 313 ~G~~D~V~~gR~~la 327 (367)
.| +.+|+.+-.++.
T Consensus 221 lG-v~~v~~~~~~~~ 234 (285)
T TIGR02317 221 AG-YKMVIYPVTAFR 234 (285)
T ss_pred cC-CcEEEEchHHHH
Confidence 78 899999955543
No 250
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.93 E-value=0.03 Score=51.53 Aligned_cols=136 Identities=16% Similarity=0.075 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCcccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECA 239 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~ 239 (367)
.+.++++.++|+|-|-|...- -+| .+.++++-+..|+. .+++.+.-.....
T Consensus 85 ~e~~~~~l~~Ga~kvvigt~a--------------~~~-------------p~~~~~~~~~~g~~~ivvslD~~~~~~v~ 137 (232)
T PRK13586 85 IEKAKRLLSLDVNALVFSTIV--------------FTN-------------FNLFHDIVREIGSNRVLVSIDYDNTKRVL 137 (232)
T ss_pred HHHHHHHHHCCCCEEEECchh--------------hCC-------------HHHHHHHHHHhCCCCEEEEEEcCCCCEEE
Confidence 345666777999998765322 011 36777778888755 3556652111111
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcE
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDL 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~ 318 (367)
..++..+.-...++++.+++.|+.-+-++.-....+.. .++.+.++.+++. +.|++++||+ +.++..++.+.| +|.
T Consensus 138 ~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~-G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G-~~g 214 (232)
T PRK13586 138 IRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTK-GIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVG-FDY 214 (232)
T ss_pred ccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCc-CcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC-CCE
Confidence 11111111234578889999998654443222211112 2345667777765 5679999999 899999988887 999
Q ss_pred EcccHHHHh
Q 017733 319 VAFGRLFLA 327 (367)
Q Consensus 319 V~~gR~~la 327 (367)
|.+|+++..
T Consensus 215 vivg~Aly~ 223 (232)
T PRK13586 215 IIVGMAFYL 223 (232)
T ss_pred EEEehhhhc
Confidence 999999874
No 251
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.90 E-value=0.0096 Score=69.32 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+++++.|+.+++.||..++|..|.+ . + ...-.++|++||+++|++ .|.+..|.
T Consensus 1092 ~~~~~~a~~~~~~Gf~~~KlKvG~~--------------~-----~----~~~D~~~i~alRe~~G~~~~LrlDAN~--- 1145 (1655)
T PLN02980 1092 LEVAYVARKLVEEGFSAIKLKVGRR--------------V-----S----PIQDAAVIQEVRKAVGYQIELRADANR--- 1145 (1655)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCC--------------C-----C----HHHHHHHHHHHHHHcCCCCeEEEECCC---
Confidence 3456667777789999999987531 0 1 123478999999999975 34444443
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHH-----HHHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRD-----EGNKAV 311 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~-----~a~~~L 311 (367)
..+.+++.++++.|++.++.||+ +|-. ....+..+++.+++||.+...+ +.. .+.+++
T Consensus 1146 ------~ws~~~A~~~~~~L~~~~i~~iE--qPl~--------~~~~l~~l~~~~~iPIA~DEs~~~~~~~~~~~~~~~i 1209 (1655)
T PLN02980 1146 ------NWTYEEAIEFGSLVKSCNLKYIE--EPVQ--------DEDDLIKFCEETGLPVALDETIDKFEECPLRMLTKYT 1209 (1655)
T ss_pred ------CCCHHHHHHHHHHHhhcCCCEEE--CCCC--------CHHHHHHHHHhCCCCEEeCCCcCCcccchHHHHHHHH
Confidence 34678899999999999999998 4421 1234566777777777776665 432 245555
Q ss_pred HcC
Q 017733 312 AAN 314 (367)
Q Consensus 312 ~~G 314 (367)
+.+
T Consensus 1210 ~~~ 1212 (1655)
T PLN02980 1210 HPG 1212 (1655)
T ss_pred HCC
Confidence 555
No 252
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.90 E-value=0.014 Score=54.99 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=70.3
Q ss_pred ccCCCCCCCc--hhhHhHHH---HHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEe
Q 017733 195 NDRTDEYGGS--LENRCRFA---LEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVI 268 (367)
Q Consensus 195 N~R~D~yGgs--~enr~r~~---~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~ 268 (367)
|+|-+-+..- ..|...+. .+-++.+|+.+++. .|+|-.+ +.+++.+ ..+.|+|||-+.
T Consensus 146 ~HR~~L~d~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~------------s~eea~~----A~~~gaDyI~ld 209 (268)
T cd01572 146 NHRFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVE------------TLEQLKE----ALEAGADIIMLD 209 (268)
T ss_pred cccCCCcceeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEEC------------CHHHHHH----HHHcCCCEEEEC
Confidence 5555554432 23444433 45788999999855 5666333 2344332 346899999874
Q ss_pred cCCccccCCchhhHHHHHHHHHhc--CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 269 EPRMIQLTDKSETQRSLLSMRRAF--EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.- ..+.++.+.+.. ++|+.+.||++++.+.++.+.| +|+|+++....
T Consensus 210 ~~----------~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~G-vd~Iav~sl~~ 258 (268)
T cd01572 210 NM----------SPEELREAVALLKGRVLLEASGGITLENIRAYAETG-VDYISVGALTH 258 (268)
T ss_pred Cc----------CHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEEeeec
Confidence 21 124455555444 4899999999999999999999 99999998765
No 253
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.88 E-value=0.03 Score=52.77 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=69.3
Q ss_pred cccCCCCCCCc--hhhHhHHH---HHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEE
Q 017733 194 VNDRTDEYGGS--LENRCRFA---LEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHV 267 (367)
Q Consensus 194 ~N~R~D~yGgs--~enr~r~~---~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v 267 (367)
.|+|.+-+..- ..|...+. .+-++++|+..++. .|+| +.+ +.+++.+. ...|+|||-+
T Consensus 144 ~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~v--ev~----------t~eea~~A----~~~gaD~I~l 207 (269)
T cd01568 144 DNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEV--EVE----------TLEEAEEA----LEAGADIIML 207 (269)
T ss_pred ccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEE--ecC----------CHHHHHHH----HHcCCCEEEE
Confidence 45666554432 33443332 25689999999854 5665 331 23443333 3579999987
Q ss_pred ecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 268 IEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
..- . ........+.+++..++|+.+.||+|++.+.++++.| +|+|+++....+-|
T Consensus 208 d~~--~----~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~G-ad~Isvgal~~s~~ 262 (269)
T cd01568 208 DNM--S----PEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETG-VDVISTGALTHSAP 262 (269)
T ss_pred CCC--C----HHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEcHHHcCCC
Confidence 421 1 0111112223333236789999999999999999999 99999987766654
No 254
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=96.88 E-value=0.019 Score=56.23 Aligned_cols=70 Identities=30% Similarity=0.178 Sum_probs=55.6
Q ss_pred hhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 257 LNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 257 L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
....|++.|.+++..-.+.....+....+..+++.++ ++|++.||+ +..+..++|+-| +|+|++||+++.
T Consensus 235 a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG-A~~v~igrp~L~ 307 (360)
T COG1304 235 AGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG-ADAVGIGRPFLY 307 (360)
T ss_pred hccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC-CchhhhhHHHHH
Confidence 4467889998876433233344445677888999987 789999999 899999999999 999999999875
No 255
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=96.84 E-value=0.025 Score=54.65 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=70.2
Q ss_pred hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHH
Q 017733 171 AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALG 250 (367)
Q Consensus 171 aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~ 250 (367)
.||..+++..|.+ + ...-.+.|++||++++ + +.+|+-.+. ..+.+++
T Consensus 127 ~Gf~~~KvKvG~~--------------------~----~~~d~~~i~~vr~~~~-~-~~l~vDaN~-------~w~~~~A 173 (322)
T PRK05105 127 PGEKVAKVKVGLY--------------------E----AVRDGMLVNLLLEAIP-D-LKLRLDANR-------GWTLEKA 173 (322)
T ss_pred CCCCEEEEEECCC--------------------C----HHHHHHHHHHHHHhCC-C-CeEEEECCC-------CCCHHHH
Confidence 7999999987531 1 2234789999999984 4 334443321 3457889
Q ss_pred HHHHHHhhh---cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 017733 251 LYMAKALNK---FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 251 ~~l~~~L~~---~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 319 (367)
.++++.|++ .+++||+ +|. . .......+++.+++||.+...+ +++ ....+ .+.+|.|
T Consensus 174 ~~~~~~l~~~~~~~i~~iE--qP~-----~---~~~~~~~l~~~~~~PIa~DEs~~~~~-~~~~~-~~~~d~i 234 (322)
T PRK05105 174 QQFAKYVPPDYRHRIAFLE--EPC-----K---TPDDSRAFARATGIAIAWDESLREPD-FQFEA-EPGVRAI 234 (322)
T ss_pred HHHHHHhhhhcCCCccEEE--CCC-----C---CHHHHHHHHHhCCCCEEECCCCCchh-hhhhh-cCCCCEE
Confidence 999999998 8899988 441 1 1223577888888998888777 664 44444 4447866
No 256
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.028 Score=50.02 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=80.0
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcc-eEEEeCCCccccccC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAER-VGMRLSPYAECAEAV 242 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~-i~vrls~~~~~~~~~ 242 (367)
-...+.++|.+.|-+.+.. ..|-|+ -+.++++.++. +.. ++-..|
T Consensus 90 eVd~L~~~Ga~IIA~DaT~------------R~RP~~----------~~~~~i~~~k~---~~~l~MAD~S--------- 135 (229)
T COG3010 90 EVDALAEAGADIIAFDATD------------RPRPDG----------DLEELIARIKY---PGQLAMADCS--------- 135 (229)
T ss_pred HHHHHHHCCCcEEEeeccc------------CCCCcc----------hHHHHHHHhhc---CCcEEEeccC---------
Confidence 3334456899999887743 244441 34556665222 222 333333
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCcccc--CCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL--TDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 319 (367)
+.|+... ..++|+|+|..+...|... ....++..+++.+.+ .+.+||+-|++ ||++|.++++.| ++.|
T Consensus 136 ---t~ee~l~----a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G-a~aV 206 (229)
T COG3010 136 ---TFEEGLN----AHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG-ADAV 206 (229)
T ss_pred ---CHHHHHH----HHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC-CeEE
Confidence 2444432 3468999997766555431 122334556777777 68899999999 899999999999 9999
Q ss_pred cccHHHHhCCchHH
Q 017733 320 AFGRLFLANPDLPK 333 (367)
Q Consensus 320 ~~gR~~ladP~l~~ 333 (367)
.+|-+ +-+|+.+.
T Consensus 207 vVGsA-ITRp~~It 219 (229)
T COG3010 207 VVGSA-ITRPEEIT 219 (229)
T ss_pred EECcc-cCCHHHHH
Confidence 99865 45665433
No 257
>PRK08005 epimerase; Validated
Probab=96.80 E-value=0.084 Score=47.80 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=80.7
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~ 245 (367)
....++|.|-|-+|.=. ...+.++++.||+.- -..|+=++|. .
T Consensus 75 ~~~~~~gad~It~H~Ea--------------------------~~~~~~~l~~Ik~~G--~k~GlAlnP~---------T 117 (210)
T PRK08005 75 PWLAAIRPGWIFIHAES--------------------------VQNPSEILADIRAIG--AKAGLALNPA---------T 117 (210)
T ss_pred HHHHHhCCCEEEEcccC--------------------------ccCHHHHHHHHHHcC--CcEEEEECCC---------C
Confidence 34456899999999732 112467889999872 2568888883 3
Q ss_pred hHHHHHHHHHHhhhcCccEEEE--ecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEccc
Q 017733 246 PEALGLYMAKALNKFKLLYLHV--IEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v--~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 322 (367)
+.+....++.. +|++-+ .++.+......+....-++.+|+..+ ..+-+=||++.+.+.++.+.| +|.+.+|
T Consensus 118 p~~~i~~~l~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aG-ad~~V~G 191 (210)
T PRK08005 118 PLLPYRYLALQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAG-AQHLVIG 191 (210)
T ss_pred CHHHHHHHHHh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCC-CCEEEEC
Confidence 55554444442 455543 23333211111122233444444433 247778999999999999999 9999999
Q ss_pred HHHHhCCchHHHHH
Q 017733 323 RLFLANPDLPKRFE 336 (367)
Q Consensus 323 R~~ladP~l~~k~~ 336 (367)
++++.+++..+.++
T Consensus 192 saiF~~~d~~~~~~ 205 (210)
T PRK08005 192 RALFTTANYDVTLS 205 (210)
T ss_pred hHhhCCCCHHHHHH
Confidence 99998777555443
No 258
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.79 E-value=0.016 Score=53.80 Aligned_cols=127 Identities=16% Similarity=0.148 Sum_probs=81.9
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC-cceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA-ERVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~-~~i~vrls~~~~~~~ 240 (367)
+.-|+.|.+.|+|-|++-.-.|.|.+ .+...+.+-|.+|+++++. .++.|=|-.
T Consensus 86 ~~Ea~~Ai~~GAdEiD~Vinig~lk~-------------------g~~~~v~~ei~~v~~~~~~~~~lKVIlEt------ 140 (257)
T PRK05283 86 LAETRAAIAYGADEVDVVFPYRALMA-------------------GNEQVGFELVKACKEACAANVLLKVIIET------ 140 (257)
T ss_pred HHHHHHHHHcCCCEEeeeccHHHHhC-------------------CcHHHHHHHHHHHHHHhCCCceEEEEEec------
Confidence 45566788899999998776554322 2345678888999998863 233322211
Q ss_pred cCCCChHH-HHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-------CCcEEEeCCC-CHHHHHHHH
Q 017733 241 AVDSNPEA-LGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-------EGTFIAAGGY-SRDEGNKAV 311 (367)
Q Consensus 241 ~~~~~~~~-~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-------~~pvi~~Ggi-t~~~a~~~L 311 (367)
...+.+ +....++...++|+|||-.+.+... .......++.+++.+ ++-|=++||| |.++|.++|
T Consensus 141 --~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~----~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i 214 (257)
T PRK05283 141 --GELKDEALIRKASEIAIKAGADFIKTSTGKVP----VNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYL 214 (257)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCEEEcCCCCCC----CCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHH
Confidence 122333 3567888888999999987765322 122334444444443 2457899999 899999999
Q ss_pred HcCCCcEEc
Q 017733 312 AANYTDLVA 320 (367)
Q Consensus 312 ~~G~~D~V~ 320 (367)
+.| -+.++
T Consensus 215 ~ag-~~~lg 222 (257)
T PRK05283 215 ALA-DEILG 222 (257)
T ss_pred HHH-HHHhC
Confidence 998 45443
No 259
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.73 E-value=0.022 Score=53.50 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
..+-++++|+.++++ .|+|-.+ +.+++. ...+.|+|||-+..- ..+.++.+.+
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~------------t~eea~----~A~~~gaDyI~ld~~----------~~e~lk~~v~ 217 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE------------SLEEAE----EAAEAGADIIMLDNM----------KPEEIKEAVQ 217 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC------------CHHHHH----HHHHcCCCEEEECCC----------CHHHHHHHHH
Confidence 346789999999865 5666332 244433 334689999987421 1133444444
Q ss_pred hcC--CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 291 AFE--GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 291 ~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.++ +|+.+.||++++.+.++++.| +|+|+++....
T Consensus 218 ~~~~~ipi~AsGGI~~~ni~~~a~~G-vd~Isvgait~ 254 (265)
T TIGR00078 218 LLKGRVLLEASGGITLDNLEEYAETG-VDVISSGALTH 254 (265)
T ss_pred HhcCCCcEEEECCCCHHHHHHHHHcC-CCEEEeCHHHc
Confidence 333 799999999999999999999 99999966554
No 260
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.13 Score=48.37 Aligned_cols=188 Identities=16% Similarity=0.131 Sum_probs=111.1
Q ss_pred hhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCC---CCccc-CCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 86 QVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGE---APISS-TSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 86 ~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~---~~~~p-s~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
..+.++.+.+++.+.++++++|.+..++.=..... ... ..++. ..+|..- ...... -
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~-~~~~~v~~~a~~~~vPV~l-----HlDHg~-------------~ 87 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGAD-SLAHMVKALAEKYGVPVAL-----HLDHGA-------------S 87 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHH-HHHHHHHHHHHHCCCCEEE-----ECCCCC-------------C
Confidence 45788899999999999999999776543111000 000 00000 0022100 001110 1
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCcc-c
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAE-C 238 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~-~ 238 (367)
.+.+.+|.++||.-|-+.+.|- ++|...+++.++++...+.-=+- .||. +...|+ .
T Consensus 88 ~~~~~~ai~~GFsSvMiDgS~~--------------------~~eENi~~tkevv~~ah~~gvsVEaElG~-~GG~Edg~ 146 (286)
T COG0191 88 FEDCKQAIRAGFSSVMIDGSHL--------------------PFEENIAITKEVVEFAHAYGVSVEAELGT-LGGEEDGV 146 (286)
T ss_pred HHHHHHHHhcCCceEEecCCcC--------------------CHHHHHHHHHHHHHHHHHcCCcEEEEecc-ccCccCCc
Confidence 3456677889999999887761 26778899999998877652111 2332 222222 1
Q ss_pred cccCC---CChHHHHHHHHHHhhhcCccEEEEecCCccccCCc-h--hhHHHHHHHHHhcCCcEEEeC--CCCHHHHHHH
Q 017733 239 AEAVD---SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK-S--ETQRSLLSMRRAFEGTFIAAG--GYSRDEGNKA 310 (367)
Q Consensus 239 ~~~~~---~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~-~--~~~~~~~~ir~~~~~pvi~~G--git~~~a~~~ 310 (367)
..... ...++++..++ +..|+|.|-+.-++....+.. . -....++.+++.+++|++.=| |+..++.+++
T Consensus 147 ~~~~~~~~~tdp~ea~~fv---~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~a 223 (286)
T COG0191 147 VLYTDPADLTDPEEALEFV---ERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREA 223 (286)
T ss_pred ccccchhhhCCHHHHHHHH---hccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 11111 12244444443 457899998877776555542 2 234678899999999966555 4689999999
Q ss_pred HHcCCC
Q 017733 311 VAANYT 316 (367)
Q Consensus 311 L~~G~~ 316 (367)
|+-|.+
T Consensus 224 I~~GV~ 229 (286)
T COG0191 224 IKLGVA 229 (286)
T ss_pred HHhCce
Confidence 999943
No 261
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.71 E-value=0.063 Score=50.62 Aligned_cols=145 Identities=18% Similarity=0.159 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~ 238 (367)
.+.+-++.+.+.|.+||-+.+.-| + .+--+.+.|.+++..+++ .++.. +|.+=++.
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstG----E-----------~~~ls~~Er~~l~~~~~~----~~~~~~~vi~gv~~---- 75 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTG----E-----------APTLTDEERKEVIEAVVE----AVAGRVPVIAGVGA---- 75 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCc----c-----------cccCCHHHHHHHHHHHHH----HhCCCCeEEEecCC----
Confidence 445555566668999999876543 1 112355666655544444 44433 55554433
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEE------eCC-CCHHHHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIA------AGG-YSRDEGNKAV 311 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~------~Gg-it~~~a~~~L 311 (367)
.+.+++.++++..++.|+|.+-+..+.+.. .+......+.+.|.+.++.|++. +|. ++++...++.
T Consensus 76 ------~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 76 ------NSTREAIELARHAEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred ------ccHHHHHHHHHHHHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHh
Confidence 346678999999999999999887665543 22233445667788888889774 233 3888888887
Q ss_pred HcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 312 AANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 312 ~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
+.. .++++ .-...|.....++++
T Consensus 149 ~~~--~v~gi-K~s~~d~~~~~~~~~ 171 (281)
T cd00408 149 EHP--NIVGI-KDSSGDLDRLTRLIA 171 (281)
T ss_pred cCC--CEEEE-EeCCCCHHHHHHHHH
Confidence 533 33333 222234444445543
No 262
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=96.70 E-value=0.016 Score=42.37 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC
Q 017733 215 VVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE 293 (367)
Q Consensus 215 ii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~ 293 (367)
.|++||+++|++ .|.+..|. ..+.+++..+++.|++ +.|++ ++- .+......+.+++.++
T Consensus 1 ri~avr~~~g~~~~l~vDan~---------~~~~~~a~~~~~~l~~--~~~iE--eP~------~~~d~~~~~~l~~~~~ 61 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQ---------AWTLEEAIRLARALED--YEWIE--EPL------PPDDLDGLAELRQQTS 61 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TT---------BBSHHHHHHHHHHHGG--GSEEE--SSS------STTSHHHHHHHHHHCS
T ss_pred CHHHHHHhhCCCCeEEEECCC---------CCCHHHHHHHHHHcCh--hheee--cCC------CCCCHHHHHHHHHhCC
Confidence 489999999986 56766665 2357889999999988 47776 331 1224567888999999
Q ss_pred CcEEE
Q 017733 294 GTFIA 298 (367)
Q Consensus 294 ~pvi~ 298 (367)
+||.+
T Consensus 62 ~pia~ 66 (67)
T PF01188_consen 62 VPIAA 66 (67)
T ss_dssp SEEEE
T ss_pred CCEEe
Confidence 99876
No 263
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.69 E-value=0.12 Score=47.35 Aligned_cols=127 Identities=15% Similarity=0.186 Sum_probs=79.1
Q ss_pred HHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCCh
Q 017733 167 NAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNP 246 (367)
Q Consensus 167 ~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~ 246 (367)
...++|.|.|-+|.=. + .-+.++++.||+.--.-..|+=|+|. .+
T Consensus 86 ~~~~aGad~It~H~Ea---------------~-----------~~~~~~l~~Ik~~g~~~kaGlalnP~---------Tp 130 (228)
T PRK08091 86 ACVAAGADIVTLQVEQ---------------T-----------HDLALTIEWLAKQKTTVLIGLCLCPE---------TP 130 (228)
T ss_pred HHHHhCCCEEEEcccC---------------c-----------ccHHHHHHHHHHCCCCceEEEEECCC---------CC
Confidence 4456899999999731 0 12568889999873112568888883 35
Q ss_pred HHHHHHHHHHhhhcCccEEEE--ecCCccccCCchhhHHHHHHHHHhc-----CCcEEEeCCCCHHHHHHHHHcCCCcEE
Q 017733 247 EALGLYMAKALNKFKLLYLHV--IEPRMIQLTDKSETQRSLLSMRRAF-----EGTFIAAGGYSRDEGNKAVAANYTDLV 319 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v--~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~Ggit~~~a~~~L~~G~~D~V 319 (367)
.+....++.. +|++-+ .++.+......+....-++++|+.. +..+-+=||++.+.+.++.+.| +|.+
T Consensus 131 ~~~i~~~l~~-----vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aG-aD~~ 204 (228)
T PRK08091 131 ISLLEPYLDQ-----IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQ-IDWV 204 (228)
T ss_pred HHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCC-CCEE
Confidence 5655445443 565543 2343322111122222333333332 2346677999999999999999 9999
Q ss_pred cccHHHHhCCchHHH
Q 017733 320 AFGRLFLANPDLPKR 334 (367)
Q Consensus 320 ~~gR~~ladP~l~~k 334 (367)
.+|++++.+++....
T Consensus 205 V~GSalF~~~d~~~~ 219 (228)
T PRK08091 205 VSGSALFSQGELKTT 219 (228)
T ss_pred EEChhhhCCCCHHHH
Confidence 999999988875443
No 264
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.69 E-value=0.021 Score=53.88 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.+-++.+|+.+++. .|+|-.+ +.+++.+ ..+.|+|||-+.. ...+.++++.+
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~------------tleea~~----A~~~gaDyI~lD~----------~~~e~l~~~~~ 227 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETE------------TEEQVRE----AVAAGADIIMFDN----------RTPDEIREFVK 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeC------------CHHHHHH----HHHcCCCEEEECC----------CCHHHHHHHHH
Confidence 567889999999865 5666332 2344332 3468999997621 12244555555
Q ss_pred hcC--CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 291 AFE--GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 291 ~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
..+ +|+.+.|||+++.+.++++.| +|+|++|....
T Consensus 228 ~~~~~i~i~AiGGIt~~ni~~~a~~G-vd~IAvg~l~~ 264 (277)
T PRK08072 228 LVPSAIVTEASGGITLENLPAYGGTG-VDYISLGFLTH 264 (277)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhc
Confidence 554 567899999999999999999 99999999776
No 265
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.63 E-value=0.0072 Score=53.77 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=51.0
Q ss_pred hhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 257 LNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 257 L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
..+.|+||+-+. ++ .......+++.++..+ ++|+++.||+|++.+.++++.| ++.|++++.++.
T Consensus 121 A~~~Gadyv~~F-pt-----~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aG-a~~vav~s~i~~ 185 (187)
T PRK07455 121 AWQAGASCVKVF-PV-----QAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAG-AIAVGLSGQLFP 185 (187)
T ss_pred HHHCCCCEEEEC-cC-----CcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCC-CeEEEEehhccc
Confidence 345899999872 11 1122357788899988 5999999999999999999999 999999998753
No 266
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.62 E-value=0.17 Score=49.21 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc---ceE
Q 017733 153 EIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE---RVG 229 (367)
Q Consensus 153 eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~---~i~ 229 (367)
-++.+++...+..+++.++||+-|-+.+.+ -+++...+++.++++..+.. |-. .||
T Consensus 104 ~~~~~~~a~~~~~~~a~~~GftSVMiDgS~--------------------lp~eENI~~TkevVe~Ah~~-gvsVEaElG 162 (345)
T cd00946 104 WFDGLLEADEEYFKQHGEPLFSSHMLDLSE--------------------EPLEENIEICKKYLERMAKI-NMWLEMEIG 162 (345)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEeeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEec
Confidence 466666666667778889999999998765 25788889999999888654 211 233
Q ss_pred EEeCCCcccccc------CCCChHHHHHHHHHHhhh-cCccEEEEecCCccccCC-chh--hHHHHHHH----HHhc---
Q 017733 230 MRLSPYAECAEA------VDSNPEALGLYMAKALNK-FKLLYLHVIEPRMIQLTD-KSE--TQRSLLSM----RRAF--- 292 (367)
Q Consensus 230 vrls~~~~~~~~------~~~~~~~~~~~l~~~L~~-~Gvd~i~v~~~~~~~~~~-~~~--~~~~~~~i----r~~~--- 292 (367)
++...++.... .....++++.+|++.+.. .|+|.+-++-++.+..+. ..+ +.+.++.| ++.+
T Consensus 163 -~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~ 241 (345)
T cd00946 163 -ITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLA 241 (345)
T ss_pred -ccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccc
Confidence 22222222110 113457888899887644 489999998888766554 222 34556666 5555
Q ss_pred ---CCcEEEeC--CCCHHHHHHHHHcCCCcEEcccHHH
Q 017733 293 ---EGTFIAAG--GYSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 293 ---~~pvi~~G--git~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
++|++.=| |++.++.+++++.|. -=|=+++.+
T Consensus 242 ~~~~ipLVLHGgSG~~~e~i~kai~~GI-~KiNi~T~l 278 (345)
T cd00946 242 DDKPLYFVFHGGSGSTKEEIREAISYGV-VKMNIDTDT 278 (345)
T ss_pred cCCCCCEEEeCCCCCCHHHHHHHHHcCC-eeEEeCcHH
Confidence 57766555 467899999999994 345554443
No 267
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.61 E-value=0.3 Score=46.51 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCc-hhhHhHHHHHHHHHHHHHhC-Cc-ceEEEeCCCcc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGS-LENRCRFALEVVEAVVREIG-AE-RVGMRLSPYAE 237 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs-~enr~r~~~eii~aiR~~vg-~~-~i~vrls~~~~ 237 (367)
..+.+++..++|+.||-|-=.. .+||+..++|. +.. .....+-|++++++.. ++ .|.-|.-...
T Consensus 94 v~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~k~lv~-~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~- 160 (294)
T TIGR02319 94 VWRATREFERVGIVGYHLEDQV-----------NPKRCGHLEGKRLIS-TEEMTGKIEAAVEAREDEDFTIIARTDARE- 160 (294)
T ss_pred HHHHHHHHHHcCCeEEEEECCC-----------CccccCCCCCccccC-HHHHHHHHHHHHHhccCCCeEEEEEecccc-
Confidence 4667788889999999886432 35777766663 222 2344555555665543 23 4666776521
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcE---EEeCCCCH-HHHHHHHHc
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTF---IAAGGYSR-DEGNKAVAA 313 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pv---i~~Ggit~-~~a~~~L~~ 313 (367)
....+++++-++...++|+|.|-+... ...+.++.+.+.++.|+ +..++-++ -..+++-+-
T Consensus 161 ------~~g~deaI~Ra~aY~eAGAD~ifi~~~---------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~l 225 (294)
T TIGR02319 161 ------SFGLDEAIRRSREYVAAGADCIFLEAM---------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESI 225 (294)
T ss_pred ------cCCHHHHHHHHHHHHHhCCCEEEecCC---------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHc
Confidence 124688888899999999998876421 13355778888888886 34444333 346666777
Q ss_pred CCCcEEcccHHHH
Q 017733 314 NYTDLVAFGRLFL 326 (367)
Q Consensus 314 G~~D~V~~gR~~l 326 (367)
| +.+|..+-.++
T Consensus 226 G-~~~v~~~~~~~ 237 (294)
T TIGR02319 226 G-YNLAIYPLSGW 237 (294)
T ss_pred C-CcEEEEcHHHH
Confidence 8 89999985543
No 268
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.55 E-value=0.046 Score=49.22 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 282 QRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 282 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
..+++.++.-++ ++++.+||++++.+.++|+.| +..|++|..++..
T Consensus 136 ~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG-a~~vg~Gs~L~~~ 182 (204)
T TIGR01182 136 VKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP-NVACGGGSWLVPK 182 (204)
T ss_pred HHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC-CEEEEEChhhcCc
Confidence 456777887775 689999999999999999999 8999999998753
No 269
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.52 E-value=0.082 Score=51.41 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=80.7
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhh-HhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLEN-RCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~en-r~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
.++++++.|.|+|.++.-.| .|. ...+++ ..+++.++.++.++.- -|+.+-+-.+..-....
T Consensus 111 sve~a~~~GAdAVk~lv~~~--------------~d~-~~~~~~~~~~~l~rv~~ec~~~g--iPlllE~l~y~~~~~~~ 173 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYR--------------PDE-DDAINDRKHAFVERVGAECRAND--IPFFLEPLTYDGKGSDK 173 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeC--------------CCc-chHHHHHHHHHHHHHHHHHHHcC--CceEEEEeccCCCcccc
Confidence 35668999999999987432 110 001122 2345666666666642 24444321111100000
Q ss_pred CC-----ChHHHHHHHHHHhh--hcCccEEEEecCCcc----c------cCCchhhHHHHHHHHHhcCCc-EEEeCCCCH
Q 017733 243 DS-----NPEALGLYMAKALN--KFKLLYLHVIEPRMI----Q------LTDKSETQRSLLSMRRAFEGT-FIAAGGYSR 304 (367)
Q Consensus 243 ~~-----~~~~~~~~l~~~L~--~~Gvd~i~v~~~~~~----~------~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~ 304 (367)
.. ...+.....++.+. ++|+|++-+--+.-. . .++...-....+.+.+..++| |+.+||.+.
T Consensus 174 ~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~~ 253 (340)
T PRK12858 174 KAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVSP 253 (340)
T ss_pred ccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCCH
Confidence 01 22455667777777 499999877433110 0 001111113445556667788 556778754
Q ss_pred H----HHHHHHHcCCC--cEEcccHHHHhCC
Q 017733 305 D----EGNKAVAANYT--DLVAFGRLFLANP 329 (367)
Q Consensus 305 ~----~a~~~L~~G~~--D~V~~gR~~ladP 329 (367)
+ ..+.+++.| + ..|.+||....++
T Consensus 254 ~~f~~~l~~A~~aG-a~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 254 ELFRRTLEFACEAG-ADFSGVLCGRATWQDG 283 (340)
T ss_pred HHHHHHHHHHHHcC-CCccchhhhHHHHhhh
Confidence 4 456677777 7 8999999988765
No 270
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.50 E-value=0.1 Score=45.84 Aligned_cols=141 Identities=16% Similarity=0.057 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC-c-ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA-E-RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~-~-~i~vrls~~~ 236 (367)
+.+.+.++.+.+.|+|+|.+.+ ++++.+++.++. . +|.+.++...
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------------------------------~~i~~~~~~~~~~~~~v~~~v~~~~ 59 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------------------------------GYVRLAADALAGSDVPVIVVVGFPT 59 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------------------------------HHHHHHHHHhCCCCCeEEEEecCCC
Confidence 3456666777779999999863 678888888765 4 6778776531
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCC-chhhHHHHHHHHHhc--CCcEEEeC---CC-CHHHHHH
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTD-KSETQRSLLSMRRAF--EGTFIAAG---GY-SRDEGNK 309 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~-~~~~~~~~~~ir~~~--~~pvi~~G---gi-t~~~a~~ 309 (367)
.....+++.+.++...+.|+|.+.+..+.+..+.. ........+.+.+.+ +.|++.-- .. +++...+
T Consensus 60 ------~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~ 133 (201)
T cd00945 60 ------GLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAK 133 (201)
T ss_pred ------CCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHH
Confidence 11235778889999999999999886443321110 122335566777774 77866532 23 5555444
Q ss_pred H---HHcCCCcEEcccHHHH---hCCchHHHHHhC
Q 017733 310 A---VAANYTDLVAFGRLFL---ANPDLPKRFELN 338 (367)
Q Consensus 310 ~---L~~G~~D~V~~gR~~l---adP~l~~k~~~g 338 (367)
+ ++.-.+|+|-...+.. .|.+...++++.
T Consensus 134 ~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~ 168 (201)
T cd00945 134 AARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEA 168 (201)
T ss_pred HHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 3 3333489987665432 255556666553
No 271
>PRK14057 epimerase; Provisional
Probab=96.47 E-value=0.072 Score=49.50 Aligned_cols=141 Identities=11% Similarity=0.146 Sum_probs=84.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhC-
Q 017733 146 PRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIG- 224 (367)
Q Consensus 146 ~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg- 224 (367)
.|-|.. +.+..++.| .++|.|-|-+|.=. + .-+.++++.||+.--
T Consensus 80 vHLMV~-~P~~~i~~~-------~~aGad~It~H~Ea---------------~-----------~~~~~~l~~Ir~~G~k 125 (254)
T PRK14057 80 VHLMVA-DQWTAAQAC-------VKAGAHCITLQAEG---------------D-----------IHLHHTLSWLGQQTVP 125 (254)
T ss_pred EEeeeC-CHHHHHHHH-------HHhCCCEEEEeecc---------------c-----------cCHHHHHHHHHHcCCC
Confidence 344544 344445444 45799999999731 0 124678899998731
Q ss_pred ----C--cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEE--ecCCccccCCchhhHHHHHHHHHhc----
Q 017733 225 ----A--ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHV--IEPRMIQLTDKSETQRSLLSMRRAF---- 292 (367)
Q Consensus 225 ----~--~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v--~~~~~~~~~~~~~~~~~~~~ir~~~---- 292 (367)
+ -..++=|+| ..+.+....++.. +|+|-+ .++.+......+....-++.+|+..
T Consensus 126 ~~~~~~~~kaGlAlnP---------~Tp~e~i~~~l~~-----vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~ 191 (254)
T PRK14057 126 VIGGEMPVIRGISLCP---------ATPLDVIIPILSD-----VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKR 191 (254)
T ss_pred cccccccceeEEEECC---------CCCHHHHHHHHHh-----CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcC
Confidence 1 136888888 3356655555443 555533 2343321111111222233333332
Q ss_pred -CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHH
Q 017733 293 -EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRF 335 (367)
Q Consensus 293 -~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~ 335 (367)
+..+-+=||++.+.+.++.+.| +|.+.+|++++.++++.+.+
T Consensus 192 ~~~~IeVDGGI~~~ti~~l~~aG-ad~~V~GSalF~~~d~~~~i 234 (254)
T PRK14057 192 EGKIIVIDGSLTQDQLPSLIAQG-IDRVVSGSALFRDDRLVENT 234 (254)
T ss_pred CCceEEEECCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHH
Confidence 2346777999999999999999 99999999999888754443
No 272
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.47 E-value=0.034 Score=51.79 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEE-e--CCCcc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMR-L--SPYAE 237 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vr-l--s~~~~ 237 (367)
..+-|+...++|+++|=+. +-.+-||||+ +-+++||+.+. -|+.-| + .++.-
T Consensus 70 ~~~~a~~y~~~GA~aiSVl----------------Te~~~F~Gs~--------~dL~~v~~~~~-~PvL~KDFIid~~QI 124 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVL----------------TEPKFFGGSL--------EDLRAVRKAVD-LPVLRKDFIIDPYQI 124 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE------------------SCCCHHHH--------HHHHHHHHHSS-S-EEEES---SHHHH
T ss_pred HHHHHHHHHhcCCCEEEEE----------------CCCCCCCCCH--------HHHHHHHHHhC-CCcccccCCCCHHHH
Confidence 3566667778999999975 3344678884 45677777763 232221 0 00000
Q ss_pred ccc--c--------CCCChHHHHHHHHHHhhhcCccE-EEEec-------------------CCccccCCchhhHHHHHH
Q 017733 238 CAE--A--------VDSNPEALGLYMAKALNKFKLLY-LHVIE-------------------PRMIQLTDKSETQRSLLS 287 (367)
Q Consensus 238 ~~~--~--------~~~~~~~~~~~l~~~L~~~Gvd~-i~v~~-------------------~~~~~~~~~~~~~~~~~~ 287 (367)
+.. . ..-.+.+...++.+...+.|++. ++||. ++..... ........
T Consensus 125 ~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~---vd~~~~~~ 201 (254)
T PF00218_consen 125 YEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFE---VDLNRTEE 201 (254)
T ss_dssp HHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCC---BHTHHHHH
T ss_pred HHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcc---cChHHHHH
Confidence 000 0 00112333445555556666663 45543 2221111 12344555
Q ss_pred HHHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 288 MRRAFE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 288 ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
+...++ ..+|+-+|+ |++++..+...| +|.|.+|..++..||...++++
T Consensus 202 l~~~ip~~~~~iseSGI~~~~d~~~l~~~G-~davLVGe~lm~~~d~~~~~~~ 253 (254)
T PF00218_consen 202 LAPLIPKDVIVISESGIKTPEDARRLARAG-ADAVLVGEALMRSPDPGEALRE 253 (254)
T ss_dssp HHCHSHTTSEEEEESS-SSHHHHHHHCTTT--SEEEESHHHHTSSSHHHHHHH
T ss_pred HHhhCccceeEEeecCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHhc
Confidence 666654 557778888 899999999998 9999999999999999888764
No 273
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=96.41 E-value=0.25 Score=48.02 Aligned_cols=120 Identities=9% Similarity=0.016 Sum_probs=75.1
Q ss_pred chhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCccccc--c----CCCChHHHHHHHHHHhh-hcCccEEEEecCCccc
Q 017733 204 SLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECAE--A----VDSNPEALGLYMAKALN-KFKLLYLHVIEPRMIQ 274 (367)
Q Consensus 204 s~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~~--~----~~~~~~~~~~~l~~~L~-~~Gvd~i~v~~~~~~~ 274 (367)
++|...+.+.++++..+..-=.- .|+ ++...++... . ....+++++.+|+++.. ..|+|.+-++-++.+.
T Consensus 147 pfeENI~~TrevVe~Ah~~GvsVEaELG-~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG 225 (357)
T TIGR01520 147 PIEENIEICVKYLKRMAKIKMWLEIEIG-ITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHG 225 (357)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEec-ccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccC
Confidence 47888999999998866542111 233 3333332210 0 11345788888887663 3489999998887665
Q ss_pred cCC-chh--hHHHHHHH----HHhcCCc------EEEeCC--CCHHHHHHHHHcCCCcEEcccHHH
Q 017733 275 LTD-KSE--TQRSLLSM----RRAFEGT------FIAAGG--YSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 275 ~~~-~~~--~~~~~~~i----r~~~~~p------vi~~Gg--it~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
.+. ..+ +.+.++.| ++.+++| ++.=|+ ++.++..++++.|. -=|=++.-+
T Consensus 226 ~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI-~KINi~Tdl 290 (357)
T TIGR01520 226 VYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGV-VKMNIDTDT 290 (357)
T ss_pred CcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCC-eEEEeCcHH
Confidence 552 322 34567777 4556777 665554 57899999999994 445555444
No 274
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.37 E-value=0.023 Score=51.94 Aligned_cols=75 Identities=12% Similarity=-0.015 Sum_probs=53.5
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
...+.+.+.+.|+.+|-.+-..-.. ...++.+.++.+++.+++||+++||+ +++++.++.+.| +|.|.+|+++..
T Consensus 143 ~~~~~~~~~~~g~~ii~tdI~~dGt--~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G-a~~vivgsal~~ 218 (221)
T TIGR00734 143 LEEVRDFLNSFDYGLIVLDIHSVGT--MKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMG-VSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHHHhcCCEEEEEECCcccc--CCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEhHHhhC
Confidence 3445666666666444332111111 12345678899999999999999999 899999988888 999999999864
No 275
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.35 E-value=0.19 Score=45.92 Aligned_cols=138 Identities=20% Similarity=0.288 Sum_probs=84.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC
Q 017733 146 PRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA 225 (367)
Q Consensus 146 ~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~ 225 (367)
.|-|.. +.+..++.|+ ++|.|-|-+|.=. + .-+.++++.||+. |
T Consensus 67 vHLMv~-~P~~~i~~~~-------~~gad~I~~H~Ea---------------~-----------~~~~~~l~~Ir~~-g- 110 (223)
T PRK08745 67 VHLMVE-PVDRIVPDFA-------DAGATTISFHPEA---------------S-----------RHVHRTIQLIKSH-G- 110 (223)
T ss_pred EEeccC-CHHHHHHHHH-------HhCCCEEEEcccC---------------c-----------ccHHHHHHHHHHC-C-
Confidence 455553 4555555554 4799999999732 0 1246788999987 3
Q ss_pred cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEE--ecCCccccCCchhhHHHHHHHHHhc-----CCcEEE
Q 017733 226 ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHV--IEPRMIQLTDKSETQRSLLSMRRAF-----EGTFIA 298 (367)
Q Consensus 226 ~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v--~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~ 298 (367)
-..|+=|+|. .+.+....++.. +|+|-+ .++.+......+....-++.+|+.. +..+-+
T Consensus 111 ~k~GlalnP~---------T~~~~i~~~l~~-----vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeV 176 (223)
T PRK08745 111 CQAGLVLNPA---------TPVDILDWVLPE-----LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEI 176 (223)
T ss_pred CceeEEeCCC---------CCHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence 2568878883 355555445443 455433 2333321111111222333344332 234777
Q ss_pred eCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHH
Q 017733 299 AGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 299 ~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
-||++.+.+.++.+.| +|.+.+|++++..++....
T Consensus 177 DGGI~~eti~~l~~aG-aDi~V~GSaiF~~~d~~~~ 211 (223)
T PRK08745 177 DGGVKADNIGAIAAAG-ADTFVAGSAIFNAPDYAQV 211 (223)
T ss_pred ECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHH
Confidence 7999999999999999 8999999999977774333
No 276
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.31 E-value=0.042 Score=51.83 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc
Q 017733 213 LEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF 292 (367)
Q Consensus 213 ~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~ 292 (367)
.+.++.+|+..++..|+|-.. +.+++.+ ..+.|+|||-+..- . + .......+.+++..
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------------t~eea~~----A~~~gaD~I~ld~~--~---p-~~l~~~~~~~~~~~ 228 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------------SLEEALA----AAEAGADILQLDKF--S---P-EELAELVPKLRSLA 228 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------------CHHHHHH----HHHcCCCEEEECCC--C---H-HHHHHHHHHHhccC
Confidence 567888898876445565322 2344333 33689999987422 1 1 11123344455443
Q ss_pred -CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 293 -EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 293 -~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
++|++++||++++.+.++++.| +|+|+++....+.|
T Consensus 229 ~~i~i~AsGGI~~~ni~~~~~~G-vd~I~vsai~~a~~ 265 (272)
T cd01573 229 PPVLLAAAGGINIENAAAYAAAG-ADILVTSAPYYAKP 265 (272)
T ss_pred CCceEEEECCCCHHHHHHHHHcC-CcEEEEChhhcCcc
Confidence 6899999999999999999999 99998877654433
No 277
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.29 E-value=0.56 Score=44.67 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHh-CCc-ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREI-GAE-RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~v-g~~-~i~vrls~~~ 236 (367)
.+..+.+++..++|.-||-|-=.. .+||+...+|.-.-......+-|++++++. +++ .|.-|.....
T Consensus 93 ~~v~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~ 161 (292)
T PRK11320 93 FNIARTVKSMIKAGAAAVHIEDQV-----------GAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA 161 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc
Confidence 356778888899999999885322 346776665532222334455566666654 344 4566776531
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe---CCCCH-HHHHHHHH
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA---GGYSR-DEGNKAVA 312 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~---Ggit~-~~a~~~L~ 312 (367)
....+++++-++...++|+|.|-+... ...+.++.+.+.++.|++++ ++-+| -..+++-+
T Consensus 162 -------~~g~deAI~Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~ 225 (292)
T PRK11320 162 -------VEGLDAAIERAQAYVEAGADMIFPEAM---------TELEMYRRFADAVKVPILANITEFGATPLFTTEELAS 225 (292)
T ss_pred -------ccCHHHHHHHHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH
Confidence 123688888899999999998876432 13456777888888887432 33333 24666667
Q ss_pred cCCCcEEcccHHHH
Q 017733 313 ANYTDLVAFGRLFL 326 (367)
Q Consensus 313 ~G~~D~V~~gR~~l 326 (367)
-| +.+|..+-.++
T Consensus 226 lG-v~~v~~~~~~~ 238 (292)
T PRK11320 226 AG-VAMVLYPLSAF 238 (292)
T ss_pred cC-CcEEEEChHHH
Confidence 78 89999885443
No 278
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.28 E-value=0.054 Score=51.43 Aligned_cols=95 Identities=8% Similarity=0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.+.++.+|+.++.. .|.|-.. +.+++.+ ..++|+|+|-+...+ ........+.+++
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~------------tleea~e----A~~~GaD~I~LDn~~------~e~l~~av~~~~~ 239 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETE------------TLEQVQE----ALEYGADIIMLDNMP------VDLMQQAVQLIRQ 239 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC------------CHHHHHH----HHHcCCCEEEECCCC------HHHHHHHHHHHHh
Confidence 567888999998743 4565332 2444433 336899999875221 1112223344443
Q ss_pred h-cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 291 A-FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 291 ~-~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
. -++|+.++||+|.+.+.++.+.| +|+|+++.....-|
T Consensus 240 ~~~~i~leAsGGIt~~ni~~ya~tG-vD~Isvgsl~~sa~ 278 (288)
T PRK07428 240 QNPRVKIEASGNITLETIRAVAETG-VDYISSSAPITRSP 278 (288)
T ss_pred cCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEchhhhCCC
Confidence 2 35689999999999999999999 99999999887333
No 279
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.24 E-value=0.06 Score=50.83 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-
Q 017733 214 EVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF- 292 (367)
Q Consensus 214 eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~- 292 (367)
+-++++|+..+...|+|-.. +.+++. +..+.|+|||-+.. + ..+.++++.+..
T Consensus 178 ~av~~~r~~~~~~~I~VEv~------------tleea~----eA~~~gaD~I~LD~--~--------~~e~l~~~v~~~~ 231 (277)
T PRK05742 178 QAVAAAHRIAPGKPVEVEVE------------SLDELR----QALAAGADIVMLDE--L--------SLDDMREAVRLTA 231 (277)
T ss_pred HHHHHHHHhCCCCeEEEEeC------------CHHHHH----HHHHcCCCEEEECC--C--------CHHHHHHHHHHhC
Confidence 44778887754335666332 244332 33467999997631 1 122344344433
Q ss_pred -CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 293 -EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 293 -~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
++|+.++||++++.+.++.+.| +|+|++|.....=|
T Consensus 232 ~~i~leAsGGIt~~ni~~~a~tG-vD~Isvg~lt~s~~ 268 (277)
T PRK05742 232 GRAKLEASGGINESTLRVIAETG-VDYISIGAMTKDVK 268 (277)
T ss_pred CCCcEEEECCCCHHHHHHHHHcC-CCEEEEChhhcCCc
Confidence 6799999999999999999999 99999998665443
No 280
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=96.23 E-value=0.053 Score=54.49 Aligned_cols=108 Identities=6% Similarity=0.111 Sum_probs=75.7
Q ss_pred hhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcccc--ccC-------CCChHHHHHHHHHH-hhhcCccEEEEecCCccc
Q 017733 206 ENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECA--EAV-------DSNPEALGLYMAKA-LNKFKLLYLHVIEPRMIQ 274 (367)
Q Consensus 206 enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~--~~~-------~~~~~~~~~~l~~~-L~~~Gvd~i~v~~~~~~~ 274 (367)
+...+++.+.+++++..+|++ .|++..+..+.|. +.. ...+.+++.++++. +++.++.||+ +|-
T Consensus 213 ~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~~~~~~~~~s~~eai~~~~~lle~~~i~~iE--dPl--- 287 (425)
T TIGR01060 213 EEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSIE--DGL--- 287 (425)
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceeeecCcccccCHHHHHHHHHHHHhcCCcEEEE--cCC---
Confidence 456777788888888889876 6888887543332 110 01356778888885 5678888876 331
Q ss_pred cCCchhhHHHHHHHHHhc--CCcEEEeCCC-C-HHHHHHHHHcCCCcEEcc
Q 017733 275 LTDKSETQRSLLSMRRAF--EGTFIAAGGY-S-RDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 275 ~~~~~~~~~~~~~ir~~~--~~pvi~~Ggi-t-~~~a~~~L~~G~~D~V~~ 321 (367)
........+.+++.+ ++||++...+ + +++++++++.+.||.|.+
T Consensus 288 ---~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~i 335 (425)
T TIGR01060 288 ---SEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILI 335 (425)
T ss_pred ---CcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEe
Confidence 122445677799998 7888776665 4 999999999999998854
No 281
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.23 E-value=0.018 Score=52.72 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=48.6
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
..++.++-...+-|++-..+.+ ... .....+..++..+.|++.+||| |+++|+++++.| +|.|.+|..+-.||
T Consensus 145 ~alA~~~~g~~~iYLEaGSGa~----~~v-~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aG-AD~IVvGn~iee~~ 218 (230)
T PF01884_consen 145 AALAAEYLGMPIIYLEAGSGAY----GPV-PEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAG-ADTIVVGNAIEEDP 218 (230)
T ss_dssp HHHHHHHTT-SEEEEE--TTSS----S-H-HHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTT-SSEEEESCHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCCCC----CCc-cHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCC-CCEEEECCEEEEcc
Confidence 3455555444455555312211 111 1233444555568899999999 899999999999 99999999999999
Q ss_pred ch
Q 017733 330 DL 331 (367)
Q Consensus 330 ~l 331 (367)
++
T Consensus 219 ~~ 220 (230)
T PF01884_consen 219 DL 220 (230)
T ss_dssp -H
T ss_pred hH
Confidence 73
No 282
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.22 E-value=0.048 Score=61.47 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=75.0
Q ss_pred cCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc
Q 017733 196 DRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL 275 (367)
Q Consensus 196 ~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~ 275 (367)
...|-|. ..-+.+.|..+|+..+.-+|+||+...... . .++..+.++|+|+|.|+...-..-
T Consensus 973 phhdiyS------ieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v---------g---~ia~gvaka~aD~I~IdG~~GGTG 1034 (1485)
T PRK11750 973 PHHDIYS------IEDLAQLIFDLKQVNPKALVSVKLVSEPGV---------G---TIATGVAKAYADLITISGYDGGTG 1034 (1485)
T ss_pred CCccCCC------HHHHHHHHHHHHHhCCCCcEEEEEccCCCc---------c---HHHhChhhcCCCEEEEeCCCCCcc
Confidence 4455554 345788999999998755999999874211 1 134345678999999976432211
Q ss_pred C--------CchhhHHHHH----HHHHh-c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 276 T--------DKSETQRSLL----SMRRA-F--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 276 ~--------~~~~~~~~~~----~ir~~-~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
. ...++...+. .+.+. + ++.|++.|++ |+.++.+++.-| +|.|++||+++.
T Consensus 1035 Aap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLG-Ad~~~~gt~~li 1101 (1485)
T PRK11750 1035 ASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILG-AESFGFGTGPMV 1101 (1485)
T ss_pred cccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcC-CcccccchHHHH
Confidence 1 1111111222 22222 2 3679999999 999999999999 999999999874
No 283
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.21 E-value=0.074 Score=46.99 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
+-|+-|+..|.-||.+++ .+-|++||+.+.-..||+-=.. +.+..
T Consensus 3 ~mA~Aa~~gGA~giR~~~--------------------------------~~dI~aik~~v~lPIIGi~K~~---y~~~~ 47 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANG--------------------------------VEDIRAIKKAVDLPIIGIIKRD---YPDSD 47 (192)
T ss_dssp HHHHHHHHCT-SEEEEES--------------------------------HHHHHHHHTTB-S-EEEE-B-S---BTTSS
T ss_pred HHHHHHHHCCceEEEcCC--------------------------------HHHHHHHHHhcCCCEEEEEecc---CCCCC
Confidence 445666789999999874 5678999999842246652121 11111
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
-..++ +.+-++.|.++|+|.|-+..-....+ .....+.+.+|+.. ..+++ .+ |.+++..+.+.| +|+|+-
T Consensus 48 V~ITP--T~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~-~l~MA--Dist~ee~~~A~~~G-~D~I~T 118 (192)
T PF04131_consen 48 VYITP--TLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY-QLVMA--DISTLEEAINAAELG-FDIIGT 118 (192)
T ss_dssp --BS---SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT-SEEEE--E-SSHHHHHHHHHTT--SEEE-
T ss_pred eEECC--CHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC-cEEee--ecCCHHHHHHHHHcC-CCEEEc
Confidence 11111 23455667789999988754332222 33456788899988 44444 55 899999999999 999986
Q ss_pred c
Q 017733 322 G 322 (367)
Q Consensus 322 g 322 (367)
.
T Consensus 119 T 119 (192)
T PF04131_consen 119 T 119 (192)
T ss_dssp T
T ss_pred c
Confidence 4
No 284
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.19 E-value=0.6 Score=45.25 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=106.1
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAAR 166 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~ 166 (367)
++...+++..+++.|-++++-+..+-..+.|... .-|.+ =..++.+++.+-|.+|.....
T Consensus 57 ~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q------~~P~a--------------W~~~~~~~l~~~v~~yT~~vl 116 (332)
T PF07745_consen 57 LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQ------NKPAA--------------WANLSFDQLAKAVYDYTKDVL 116 (332)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-------B--TT--------------CTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCC------CCCcc--------------CCCCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999765544433211 11111 124688999999999999997
Q ss_pred HHH-HhCC--CEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 167 NAI-EAGF--DGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 167 ~a~-~aGf--dgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
.+. ++|. |-|+| |+- +-.-||.|.-+ ...+.+=.+++..-+++||+..+.-.|.|-+..
T Consensus 117 ~~l~~~G~~pd~VQV--GNE-in~Gmlwp~g~------~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~--------- 178 (332)
T PF07745_consen 117 QALKAAGVTPDMVQV--GNE-INNGMLWPDGK------PSNWDNLAKLLNAGIKAVREVDPNIKVMLHLAN--------- 178 (332)
T ss_dssp HHHHHTT--ESEEEE--SSS-GGGESTBTTTC------TT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES----------
T ss_pred HHHHHCCCCccEEEe--Ccc-ccccccCcCCC------ccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECC---------
Confidence 664 5785 45543 331 23346666533 456777888999999999996654357776643
Q ss_pred CChHHHHHHHHHHhhhcCcc--EEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC
Q 017733 244 SNPEALGLYMAKALNKFKLL--YLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG 300 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G 300 (367)
....+....+...|.+.|+| +|-+|--.+... ........++.++++++.||+.+.
T Consensus 179 ~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-~l~~l~~~l~~l~~ry~K~V~V~E 236 (332)
T PF07745_consen 179 GGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-TLEDLKNNLNDLASRYGKPVMVVE 236 (332)
T ss_dssp TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST--HHHHHHHHHHHHHHHT-EEEEEE
T ss_pred CCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-hHHHHHHHHHHHHHHhCCeeEEEe
Confidence 22345567889999988865 455542111100 111223456678888888877653
No 285
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.19 E-value=0.15 Score=46.28 Aligned_cols=139 Identities=21% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEE
Q 017733 153 EIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMR 231 (367)
Q Consensus 153 eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vr 231 (367)
||-..+..+++. +.++|+|.|=+|+.-| ...+...++.+++. +.. .+.+.
T Consensus 60 Dig~t~~~~~~~---~~~~gad~vTvh~~~g-------------------------~~~l~~~~~~~~~~-~~~v~~v~~ 110 (213)
T TIGR01740 60 DIPNTVKLQYES---KIKQGADMVNVHGVAG-------------------------SESVEAAKEAASEG-GRGLLAVTE 110 (213)
T ss_pred chHHHHHHHHHH---HHhcCCCEEEEcCCCC-------------------------HHHHHHHHHHhhcC-CCeEEEEEc
Confidence 444444555444 4579999999997543 12234444444432 333 34555
Q ss_pred eCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHH---H--
Q 017733 232 LSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRD---E-- 306 (367)
Q Consensus 232 ls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~---~-- 306 (367)
++...... . .....+....+++...+.|++-+- + ....+..+|+.++.-++.++|+.++ .
T Consensus 111 lss~~~~~-~-~~~~~~~v~~~a~~~~~~g~~g~v-~------------~~~~~~~ir~~~~~~~~vtPGI~~~g~~~~d 175 (213)
T TIGR01740 111 LTSMGSLD-Y-GEDTMEKVLEYAKEAKAFGLDGPV-C------------SAEEAKEIRKFTGDFLILTPGIRLQSKGADD 175 (213)
T ss_pred CCCCChhh-h-CcCHHHHHHHHHHHhhhcCCeEEE-e------------CHHHHHHHHHhcCCceEEeCCcCCCCCCcCC
Confidence 65422111 1 112234566667766667765432 1 1244666777766447777887543 2
Q ss_pred ------HHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 307 ------GNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 307 ------a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
..++++.| +|++.+||+++..++....++
T Consensus 176 q~~~~~~~~~~~~G-ad~iVvGr~I~~~~d~~~~~~ 210 (213)
T TIGR01740 176 QQRVVTLEDAKEAG-ADVIIVGRGIYAAEDPVEAAK 210 (213)
T ss_pred ccccCCHHHHHHcC-CCEEEEChhhcCCCCHHHHHH
Confidence 26778888 999999999998888655443
No 286
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=96.17 E-value=0.15 Score=50.85 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhC-CCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAG-FDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aG-fdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~ 236 (367)
++++..++...+.| |+.+++ .|.. . - .+..+.+-..+.|+++|+. |++ .|-|..|..
T Consensus 180 d~m~~~a~~~~~~G~~~~~Kk-vG~~--~----------~------k~~~~~~~~~~ri~~lr~~-g~~~~l~vDaN~~- 238 (408)
T TIGR01502 180 DKMILKEVDVLPHGLINSVEE-LGLD--G----------E------KLLEYVKWLRDRIIKLGRE-GYAPIFHIDVYGT- 238 (408)
T ss_pred HHHHHHHHHHHhccCccceee-ecCC--H----------H------HhhhhHHHHHHHHHHhhcc-CCCCeEEEEcCCC-
Confidence 55677777777777 888884 3321 0 0 0112334445667777743 544 344444420
Q ss_pred cccccCCCChHHHHHHHHHHhhh----cCccEEEEecCCccccCCchhhHHHHHHHHHh-----cCCcEEEeCCC-CHHH
Q 017733 237 ECAEAVDSNPEALGLYMAKALNK----FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA-----FEGTFIAAGGY-SRDE 306 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~----~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~-----~~~pvi~~Ggi-t~~~ 306 (367)
-+....++.+++.++++.|++ .++ +|+ +|-.. .....+...++.+++. +++||++...+ |+++
T Consensus 239 --~~~~~~~~~~~ai~~l~~l~~~~~~~~~-~iE--qPv~~--~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d 311 (408)
T TIGR01502 239 --IGEAFGVDIKAMADYIQTLAEAAKPFHL-RIE--GPMDV--GSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVED 311 (408)
T ss_pred --cccccCCCHHHHHHHHHHHHHhCccCCe-EEe--cCCCC--CcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHH
Confidence 000013356778889999986 454 555 33110 0111235667778887 48899999887 8999
Q ss_pred HHHHHHcCCCcEEcc
Q 017733 307 GNKAVAANYTDLVAF 321 (367)
Q Consensus 307 a~~~L~~G~~D~V~~ 321 (367)
+.++++.+.+|+|.+
T Consensus 312 ~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 312 VKFFTDAKAGHMVQI 326 (408)
T ss_pred HHHHHHhCCCCEEEe
Confidence 999999999999876
No 287
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.14 E-value=0.068 Score=48.64 Aligned_cols=123 Identities=14% Similarity=0.048 Sum_probs=72.4
Q ss_pred HHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChH
Q 017733 168 AIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 168 a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~ 247 (367)
+.++|+|.+-+|+..| ...+.+.++++++. | ..++|-+.+. .+.
T Consensus 76 ~~~~Gad~vTvH~~a~-------------------------~~~i~~~~~~~~~~-g-~~~~V~llts---------~~~ 119 (216)
T PRK13306 76 AFEAGADWVTVICAAH-------------------------IPTIKAALKVAKEF-N-GEIQIELYGN---------WTW 119 (216)
T ss_pred HHHCCCCEEEEeCCCC-------------------------HHHHHHHHHHHHHc-C-CEEEEEECCC---------CCH
Confidence 6689999999998543 12345555555542 2 2678877763 123
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCC--cEEEeCCCCHHHHHHHHHcCCCcEEcccHHH
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEG--TFIAAGGYSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~--pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
+... .+.+.+++.+-++........+.......+..+|+.... .+...||++++.+....+.| +|++.+||+.
T Consensus 120 ~~l~----~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~~-ad~~VvGr~I 194 (216)
T PRK13306 120 EQAQ----QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDLKLFKGIP-VKTFIAGRAI 194 (216)
T ss_pred HHHH----HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhHHHHhcCC-CCEEEECCcc
Confidence 3221 333445444333322211111211122334555555432 37888999998887777776 9999999999
Q ss_pred HhCCch
Q 017733 326 LANPDL 331 (367)
Q Consensus 326 ladP~l 331 (367)
+..+|.
T Consensus 195 ~~a~dp 200 (216)
T PRK13306 195 RGAADP 200 (216)
T ss_pred cCCCCH
Confidence 987873
No 288
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=96.14 E-value=0.049 Score=54.85 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=74.5
Q ss_pred ccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc
Q 017733 195 NDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ 274 (367)
Q Consensus 195 N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~ 274 (367)
+.+.|-|+ ..-+.+.|..+|++.+..+|+||+.+.. .++. ++--..++++|+|.|+...-..
T Consensus 279 ~pHHDiys------ieDLaqlI~dLk~~~~~~~I~VKlva~~---------~v~~---iaagvakA~AD~I~IdG~~GGT 340 (485)
T COG0069 279 PPHHDIYS------IEDLAQLIKDLKEANPWAKISVKLVAEH---------GVGT---IAAGVAKAGADVITIDGADGGT 340 (485)
T ss_pred CCcccccC------HHHHHHHHHHHHhcCCCCeEEEEEeccc---------chHH---HHhhhhhccCCEEEEcCCCCcC
Confidence 36778777 3456788999999987667999998732 2222 2222567899999997532211
Q ss_pred cC---------CchhhHHHH---HHHHHh-c--CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 275 LT---------DKSETQRSL---LSMRRA-F--EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 275 ~~---------~~~~~~~~~---~~ir~~-~--~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
-. +-|.....+ +.+++. + ++.|++.|++ |..+...++.-| +|.|.+|++.+.
T Consensus 341 GAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLG-Ad~v~~gTa~li 408 (485)
T COG0069 341 GASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALG-ADAVGFGTAALV 408 (485)
T ss_pred CCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhC-cchhhhchHHHH
Confidence 11 112111111 122221 1 2458899999 999999999999 999999999775
No 289
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.13 E-value=0.12 Score=47.50 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=32.3
Q ss_pred cCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 292 FEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 292 ~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
.++||+++||+ +.++..++.+.| +|.|.+|+++...
T Consensus 181 ~~~pviasGGv~~~~Dl~~l~~~g-~~gvivg~al~~g 217 (228)
T PRK04128 181 GDEEFIYAGGVSSAEDVKKLAEIG-FSGVIIGKALYEG 217 (228)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEhhhhcC
Confidence 47899999999 899999998877 9999999998765
No 290
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.11 E-value=0.17 Score=47.86 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~ 238 (367)
.+.+-.+.+.++|.+||-+.+.-| +| +--+.+.|.++ ++.+++.++.. +|.+=++.
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstG----E~-----------~~lt~~Er~~l----~~~~~~~~~~~~~vi~gv~~---- 78 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTG----ES-----------PTLSDEEHEAV----IEAVVEAVNGRVPVIAGTGS---- 78 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCc----ch-----------hhCCHHHHHHH----HHHHHHHhCCCCcEEeccCC----
Confidence 445555566679999999876543 11 12245556555 44455555433 55543332
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe------CC-CCHHHHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA------GG-YSRDEGNKAV 311 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~------Gg-it~~~a~~~L 311 (367)
.+.+++.++++..++.|+|.+-+..+.+..+ +......+.+.|.+..+.||+.- |. ++++..+++.
T Consensus 79 ------~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~-~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 79 ------NNTAEAIELTKRAEKAGADAALVVTPYYNKP-SQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred ------ccHHHHHHHHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 3567889999999999999998876654322 23334456777888888886632 32 4888888888
Q ss_pred HcC
Q 017733 312 AAN 314 (367)
Q Consensus 312 ~~G 314 (367)
+..
T Consensus 152 ~~p 154 (284)
T cd00950 152 EHP 154 (284)
T ss_pred cCC
Confidence 654
No 291
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.038 Score=53.96 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=88.1
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~ 244 (367)
-.+..+||.|.|-|..+.|+ .-+-+++|+.||+..+...|. . +
T Consensus 256 l~ll~~aGvdvviLDSSqGn------------------------S~~qiemik~iK~~yP~l~Vi---a----------G 298 (503)
T KOG2550|consen 256 LDLLVQAGVDVVILDSSQGN------------------------SIYQLEMIKYIKETYPDLQII---A----------G 298 (503)
T ss_pred HHHhhhcCCcEEEEecCCCc------------------------chhHHHHHHHHHhhCCCceee---c----------c
Confidence 34556899999999998863 235589999999999764322 1 1
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCcc----cc--C-Cchh--hHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcC
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMI----QL--T-DKSE--TQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAAN 314 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~----~~--~-~~~~--~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G 314 (367)
+-+ +.+-++.|-++|+|-+.|..+.-+ +. . +.+. .-.-...+...+.+|||+-||+ ++...-++|.-|
T Consensus 299 NVV--T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lG 376 (503)
T KOG2550|consen 299 NVV--TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLG 376 (503)
T ss_pred cee--eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcC
Confidence 111 234666778899999988654321 10 0 1111 1122345666789999999999 788999999999
Q ss_pred CCcEEcccHHHHhCCchH
Q 017733 315 YTDLVAFGRLFLANPDLP 332 (367)
Q Consensus 315 ~~D~V~~gR~~ladP~l~ 332 (367)
++.|+||--|.+--+-|
T Consensus 377 -AstVMmG~lLAgtTEap 393 (503)
T KOG2550|consen 377 -ASTVMMGGLLAGTTEAP 393 (503)
T ss_pred -chhheecceeeeeeccC
Confidence 89999997766655555
No 292
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.05 E-value=0.18 Score=45.70 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCch
Q 017733 282 QRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDL 331 (367)
Q Consensus 282 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l 331 (367)
..+++.++.-++ ++++.+||++++.+.++++.| +.+.+++..+.++++
T Consensus 143 ~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~~~~ 191 (212)
T PRK05718 143 VKMLKALAGPFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVPKDA 191 (212)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCCcch
Confidence 456777887775 689999999999999999999 344444666665544
No 293
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.03 E-value=0.091 Score=50.25 Aligned_cols=125 Identities=25% Similarity=0.275 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC-CchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-GSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-gs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~ 236 (367)
+.+.+-+++..+.|.|||-+.+.-| |+- -|.+.|.+ +++.++++++.. +|.+=.+
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttG----------------E~~~Ls~eEr~~----v~~~~v~~~~grvpviaG~g--- 81 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTG----------------ESPTLTLEERKE----VLEAVVEAVGGRVPVIAGVG--- 81 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc----------------cchhcCHHHHHH----HHHHHHHHHCCCCcEEEecC---
Confidence 4667777788899999999876554 322 25566654 566666666543 4444233
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC-----C--CCHHHHHH
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG-----G--YSRDEGNK 309 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G-----g--it~~~a~~ 309 (367)
.+..++++++++..++.|+|.+-+..+.+..+. ......+.+.|.++++.|+|.-. + ++++...+
T Consensus 82 -------~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~-~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~ 153 (299)
T COG0329 82 -------SNSTAEAIELAKHAEKLGADGILVVPPYYNKPS-QEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIAR 153 (299)
T ss_pred -------CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC-hHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHH
Confidence 345678999999999999999988777665433 23344567778888899866543 2 37888877
Q ss_pred HHHcC
Q 017733 310 AVAAN 314 (367)
Q Consensus 310 ~L~~G 314 (367)
+-+..
T Consensus 154 la~~~ 158 (299)
T COG0329 154 LAEHP 158 (299)
T ss_pred HhcCC
Confidence 77643
No 294
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.02 E-value=0.13 Score=47.20 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC----cceEEE-eCCCc-
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA----ERVGMR-LSPYA- 236 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~----~~i~vr-ls~~~- 236 (367)
+.++.+.++|+|.|-+|+..| .+.+++..++..+ ..++|- ++...
T Consensus 71 ~~i~~~~~~gad~itvH~~ag-----------------------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~~ 121 (230)
T PRK00230 71 KAVRALAKLGVDMVNVHASGG-----------------------------PRMMKAAREALEPKSRPLLIAVTVLTSMDE 121 (230)
T ss_pred HHHHHHHHcCCCEEEEcccCC-----------------------------HHHHHHHHHHhhccCCCeEEEEEECCCCCH
Confidence 345556789999999998653 4555555555422 245655 33211
Q ss_pred -cccccCCCChHH-HHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCHH--------
Q 017733 237 -ECAEAVDSNPEA-LGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSRD-------- 305 (367)
Q Consensus 237 -~~~~~~~~~~~~-~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~-------- 305 (367)
++...+...+.+ ....+++...+.|+|.+-++ + .....+|+.++ ..+..++|++++
T Consensus 122 ~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~-~------------~~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~ 188 (230)
T PRK00230 122 EDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCS-A------------QEAAAIREATGPDFLLVTPGIRPAGSDAGDQK 188 (230)
T ss_pred HHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeC-h------------HHHHHHHhhcCCceEEEcCCcCCCCCCcchHH
Confidence 121111122233 33456666677888866432 1 12456777653 345666777544
Q ss_pred ---HHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 306 ---EGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 306 ---~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
...++++.| +|+|.+||+....+|-...++
T Consensus 189 ~~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 189 RVMTPAQAIAAG-SDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred HHhCHHHHHHcC-CCEEEECCcccCCCCHHHHHH
Confidence 578888888 999999999998887554443
No 295
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.02 E-value=0.3 Score=45.78 Aligned_cols=130 Identities=10% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCcccccc
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECAEA 241 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~~~ 241 (367)
..+.|.+.|.|+|-+|.- +|+..|+++ ++-+.+|.+.+-.- |+.. +.+- ..
T Consensus 99 sVeeAvrlGAdAV~~~v~-------------------~Gs~~E~~~---l~~l~~v~~ea~~~G~Plla-~~pr--G~-- 151 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVF-------------------IGSEYEHQS---IKNIIQLVDAGLRYGMPVMA-VTAV--GK-- 151 (264)
T ss_pred cHHHHHHCCCCEEEEEEe-------------------cCCHHHHHH---HHHHHHHHHHHHHhCCcEEE-EecC--CC--
Confidence 345578899999998863 244444433 33344444444221 5554 3331 10
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC--CH----HHHHHHHHcCC
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY--SR----DEGNKAVAANY 315 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi--t~----~~a~~~L~~G~ 315 (367)
...+..+.....++.-.++|+|+|-+. ++ . +..+++-+..++||+..||= +. +..+++|+.|
T Consensus 152 ~~~~~~~~ia~aaRiaaELGADiVK~~-------y~---~-~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aG- 219 (264)
T PRK08227 152 DMVRDARYFSLATRIAAEMGAQIIKTY-------YV---E-EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEG- 219 (264)
T ss_pred CcCchHHHHHHHHHHHHHHcCCEEecC-------CC---H-HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC-
Confidence 112233444555666688999998752 11 1 34555666788998888774 33 3467888888
Q ss_pred CcEEcccHHHHhCCchH
Q 017733 316 TDLVAFGRLFLANPDLP 332 (367)
Q Consensus 316 ~D~V~~gR~~ladP~l~ 332 (367)
+..|.+||=....|+-.
T Consensus 220 a~Gv~~GRNIfQ~~~p~ 236 (264)
T PRK08227 220 ASGVDMGRNIFQSEHPV 236 (264)
T ss_pred CceeeechhhhccCCHH
Confidence 89999999999887643
No 296
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=96.00 E-value=0.017 Score=56.16 Aligned_cols=77 Identities=21% Similarity=0.081 Sum_probs=58.2
Q ss_pred HHHHHhhhcCccEEEEecCCccccCC----chhhHHHHHHHHHhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHH
Q 017733 252 YMAKALNKFKLLYLHVIEPRMIQLTD----KSETQRSLLSMRRAFE-GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 252 ~l~~~L~~~Gvd~i~v~~~~~~~~~~----~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
..++..++.|+|.+-........... ..........+++.++ +|||+.||| +.+.+..+|+-| +|.|-||..|
T Consensus 138 ~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG-A~gVq~GT~F 216 (336)
T COG2070 138 REALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG-ADGVQMGTRF 216 (336)
T ss_pred HHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc-cHHHHhhhhh
Confidence 46667788999987654332221111 2223456788999999 899999999 999999999999 9999999999
Q ss_pred HhCC
Q 017733 326 LANP 329 (367)
Q Consensus 326 ladP 329 (367)
++=.
T Consensus 217 l~t~ 220 (336)
T COG2070 217 LATK 220 (336)
T ss_pred hccc
Confidence 9754
No 297
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.99 E-value=0.28 Score=46.56 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~ 238 (367)
.+.+-++.+.+.|.+||-+++.-|- .+--|.+.|.+++..++++ +... +|.+=++.
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE---------------~~~ls~~Er~~~~~~~~~~----~~~~~~vi~gv~~---- 79 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGE---------------SPTLTHEEHEELIRAVVEA----VNGRVPVIAGTGS---- 79 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCc---------------cccCCHHHHHHHHHHHHHH----hCCCCcEEeecCC----
Confidence 4455555667799999998765431 1123556676665544444 4333 55543332
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe------CC-CCHHHHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA------GG-YSRDEGNKAV 311 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~------Gg-it~~~a~~~L 311 (367)
.+.+++.++++..++.|+|.+-+..+.+..+ +......+.+.|.+.++.||+.- |. ++++...++.
T Consensus 80 ------~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~-~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 80 ------NSTAEAIELTKFAEKAGADGALVVTPYYNKP-TQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred ------chHHHHHHHHHHHHHcCCCEEEECCCcCCCC-CHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 3467889999999999999998876655332 23334456677888888886633 32 3788888885
Q ss_pred HcC
Q 017733 312 AAN 314 (367)
Q Consensus 312 ~~G 314 (367)
+..
T Consensus 153 ~~p 155 (292)
T PRK03170 153 EHP 155 (292)
T ss_pred cCC
Confidence 433
No 298
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.97 E-value=0.23 Score=44.85 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=75.7
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~ 245 (367)
+.+.++|+|.|-+|+-.|. ..+.++++.+|+. |- .+++=+++.. ... ...
T Consensus 74 ~~~~~~gad~vtvh~e~g~-------------------------~~l~~~i~~~~~~-g~-~~~v~~~~~~-~~~--~~~ 123 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGR-------------------------DSLKAVVEAAAES-GG-KVFVVVEMSH-PGA--LEF 123 (215)
T ss_pred HHHHhCCCCEEEEcCcCCH-------------------------HHHHHHHHHHHhc-CC-eEEEEEeCCC-CCC--CCC
Confidence 4456799999999986530 1245667777754 22 3443333321 110 111
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc-EEEeCCCCHH--HHHHHHHcCCCcEEccc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT-FIAAGGYSRD--EGNKAVAANYTDLVAFG 322 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~--~a~~~L~~G~~D~V~~g 322 (367)
..+....++.+..+.|.+...+.. ....-++.+++..+.. .+..||++++ ...++++.| +|++.+|
T Consensus 124 ~~~~~~~v~~m~~e~G~~g~~~~~----------~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aG-ad~iV~G 192 (215)
T PRK13813 124 IQPHADKLAKLAQEAGAFGVVAPA----------TRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAG-ADYVIVG 192 (215)
T ss_pred HHHHHHHHHHHHHHhCCCeEEECC----------CcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcC-CCEEEEC
Confidence 223445566666677876543211 1123345666666543 4466888665 488999998 9999999
Q ss_pred HHHHhCCchHHH
Q 017733 323 RLFLANPDLPKR 334 (367)
Q Consensus 323 R~~ladP~l~~k 334 (367)
|+++..+|....
T Consensus 193 r~I~~~~d~~~~ 204 (215)
T PRK13813 193 RSIYNAADPREA 204 (215)
T ss_pred cccCCCCCHHHH
Confidence 999988774433
No 299
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.96 E-value=0.25 Score=46.79 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
.+.+-+.++.++|.|||-+.+.-| +| +--|.+.|.+++..+++.++. ..+|.+=++.
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstG----E~-----------~~Ls~~Er~~~~~~~~~~~~~---~~~vi~gv~~----- 76 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTG----ES-----------PTLSHEEHKKVIEFVVDLVNG---RVPVIAGTGS----- 76 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCc----cc-----------ccCCHHHHHHHHHHHHHHhCC---CCeEEEeCCC-----
Confidence 344444555679999999866543 11 113456677665555554432 2244443332
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe------C-CCCHHHHHHHHH
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA------G-GYSRDEGNKAVA 312 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~------G-git~~~a~~~L~ 312 (367)
.+.++++++++..++.|+|.+-+..+.+..+ +......+.+.|.++++.||+.- | .++++..+++.+
T Consensus 77 -----~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 77 -----NATEEAISLTKFAEDVGADGFLVVTPYYNKP-TQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred -----ccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-CHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 3567799999999999999998877655432 23334456777888888887643 3 248888888886
Q ss_pred cCCCcEEcc
Q 017733 313 ANYTDLVAF 321 (367)
Q Consensus 313 ~G~~D~V~~ 321 (367)
.. .++++
T Consensus 151 ~~--~v~gi 157 (285)
T TIGR00674 151 EP--NIVAI 157 (285)
T ss_pred CC--CEEEE
Confidence 54 45554
No 300
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.96 E-value=0.62 Score=47.21 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeC
Q 017733 156 KIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLS 233 (367)
Q Consensus 156 ~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls 233 (367)
.+++.| .++|.+.|.|.+.|-.++ |..+-+...++++|+.-... .+++..+
T Consensus 105 dvv~~f---v~~a~~~Gidi~Rifd~l------------------------nd~~n~~~ai~~ak~~G~~~~~~i~yt~s 157 (468)
T PRK12581 105 DIVDKF---ISLSAQNGIDVFRIFDAL------------------------NDPRNIQQALRAVKKTGKEAQLCIAYTTS 157 (468)
T ss_pred hHHHHH---HHHHHHCCCCEEEEcccC------------------------CCHHHHHHHHHHHHHcCCEEEEEEEEEeC
Confidence 345555 566778999999986543 34677888888888865432 3566666
Q ss_pred CCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC----CCCHHHHHH
Q 017733 234 PYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG----GYSRDEGNK 309 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~ 309 (367)
+. .+.+...++++.+++.|+|.|.+....- ..........++.+|+..++||-.=. |+.......
T Consensus 158 p~---------~t~~y~~~~a~~l~~~Gad~I~IkDtaG--~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~la 226 (468)
T PRK12581 158 PV---------HTLNYYLSLVKELVEMGADSICIKDMAG--ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLA 226 (468)
T ss_pred Cc---------CcHHHHHHHHHHHHHcCCCEEEECCCCC--CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHH
Confidence 62 2467788999999999999998753211 11112234567778887677754322 223567788
Q ss_pred HHHcCCCcEE-----cccHHHHhCCch
Q 017733 310 AVAANYTDLV-----AFGRLFLANPDL 331 (367)
Q Consensus 310 ~L~~G~~D~V-----~~gR~~ladP~l 331 (367)
+++.| +|.| ++|.+. .||.+
T Consensus 227 AieAG-ad~vD~ai~g~g~ga-gN~~t 251 (468)
T PRK12581 227 AVEAG-ADRIDTALSPFSEGT-SQPAT 251 (468)
T ss_pred HHHcC-CCEEEeeccccCCCc-CChhH
Confidence 99999 7766 455543 36643
No 301
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.93 E-value=0.32 Score=46.21 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhh---HhHHHHHHHHHHHHH-hCCc-ceEEEeC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLEN---RCRFALEVVEAVVRE-IGAE-RVGMRLS 233 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~en---r~r~~~eii~aiR~~-vg~~-~i~vrls 233 (367)
....+.+++..++|+.||-|-=.. .++|+.-+|+.-+. ......+.|++++++ .+++ +|..|.-
T Consensus 92 ~~v~r~V~~l~~aGvaGi~iEDq~-----------~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD 160 (285)
T TIGR02320 92 EHFRRLVRKLERRGVSAVCIEDKL-----------GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE 160 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccC-----------CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc
Confidence 356777788888999999983221 34555555543111 123445666666665 4544 5667754
Q ss_pred CCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCC-CHHHHHHHH
Q 017733 234 PYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGY-SRDEGNKAV 311 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi-t~~~a~~~L 311 (367)
.. . .....+++++-++...++|+|.+-+..+. ........+.+.++..+ ++|++.+.+- .....+++-
T Consensus 161 a~--~----~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~----~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~ 230 (285)
T TIGR02320 161 SL--I----LGKGMEDALKRAEAYAEAGADGIMIHSRK----KDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFR 230 (285)
T ss_pred cc--c----ccCCHHHHHHHHHHHHHcCCCEEEecCCC----CCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHH
Confidence 31 0 01236889999999999999988774211 11111122333333322 3587765432 112456677
Q ss_pred HcCCCcEEcccHHH
Q 017733 312 AANYTDLVAFGRLF 325 (367)
Q Consensus 312 ~~G~~D~V~~gR~~ 325 (367)
+-| +..|+.+-.+
T Consensus 231 ~lG-~~~v~~~~~~ 243 (285)
T TIGR02320 231 DAG-ISVVIYANHL 243 (285)
T ss_pred HcC-CCEEEEhHHH
Confidence 778 8999998443
No 302
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.85 E-value=0.26 Score=47.27 Aligned_cols=121 Identities=9% Similarity=-0.040 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCC-----------------
Q 017733 209 CRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR----------------- 271 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~----------------- 271 (367)
.+-+..+.+--|+..+.++|.+.+-++..+. .....++.+-++.|.+.|+.-+-+...+
T Consensus 149 a~eAv~~a~lare~~~~~~iKlEvi~e~~~l----lpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP 224 (326)
T PRK11840 149 AEEAVRTLRLAREAGGWDLVKLEVLGDAKTL----YPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP 224 (326)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcCCCCCc----ccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee
Confidence 3445666666777777777777666643221 1124456666777766675542222111
Q ss_pred -ccc--cCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHH
Q 017733 272 -MIQ--LTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKR 334 (367)
Q Consensus 272 -~~~--~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k 334 (367)
... ......+.+.++.+.+..++||+...|| +++++.++++-| +|.|.++.+...-+|-+.-
T Consensus 225 l~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG-adgVL~nSaIa~a~dPv~M 290 (326)
T PRK11840 225 LGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG-CDGVLMNTAIAEAKNPVLM 290 (326)
T ss_pred ccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEcceeccCCCHHHH
Confidence 000 0011225678888888889999999999 899999999999 9999999999877765544
No 303
>PLN02858 fructose-bisphosphate aldolase
Probab=95.85 E-value=0.45 Score=54.62 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=119.3
Q ss_pred hhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCccc--------CCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017733 86 QVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISS--------TSKGVTPGVDGLDWSPPRPLSIEEIPKI 157 (367)
Q Consensus 86 ~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~p--------s~~~~~~~~~~~~~~~~~~mt~~eI~~i 157 (367)
.++..+-++++..+.++++++|+...... + .+.. +.+ +.+|.. +...+. .+
T Consensus 1123 n~e~~~avi~aAe~~~sPvIl~~~~~~~~----~--~~~~-~~~~~~~~a~~~~vpV~-----lHLDHg--~~------- 1181 (1378)
T PLN02858 1123 NLEGIEAVVAAAEAEKSPAILQVHPGALK----Q--GGIP-LVSCCIAAAEQASVPIT-----VHFDHG--TS------- 1181 (1378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHHh----h--cCHH-HHHHHHHHHHHCCCCEE-----EECCCC--CC-------
Confidence 35677888899999999999999653211 0 0100 111 001110 001111 11
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCC
Q 017733 158 VNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPY 235 (367)
Q Consensus 158 i~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~ 235 (367)
.+..++|.++||+-|-+.+.| -++|...+.+.++++..+..-=.- .|+ ++...
T Consensus 1182 ----~~~i~~ai~~Gf~SVM~DgS~--------------------l~~eeNi~~t~~vv~~Ah~~gv~VEaElG-~v~g~ 1236 (1378)
T PLN02858 1182 ----KHELLEALELGFDSVMVDGSH--------------------LSFTENISYTKSISSLAHSKGLMVEAELG-RLSGT 1236 (1378)
T ss_pred ----HHHHHHHHHhCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHcCCEEEEEec-ccCCc
Confidence 133566777899999887765 257888999999999888752110 222 22222
Q ss_pred cccccc----CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc-h--hhHHHHHHHHHhc---CCcEEEeC--CCC
Q 017733 236 AECAEA----VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK-S--ETQRSLLSMRRAF---EGTFIAAG--GYS 303 (367)
Q Consensus 236 ~~~~~~----~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~-~--~~~~~~~~ir~~~---~~pvi~~G--git 303 (367)
++.... .....++++.+|++ +.|+|++-++-++.+..|.. . -+.+.++.|++.+ ++|++.=| |+.
T Consensus 1237 e~~~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~ 1313 (1378)
T PLN02858 1237 EDGLTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP 1313 (1378)
T ss_pred cCCccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC
Confidence 221000 01234566777765 57999999988887665543 2 2456789999998 68866555 467
Q ss_pred HHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 304 RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 304 ~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
.++..++++.| +-=|=+++.+.. .+.+.++
T Consensus 1314 ~~~~~~ai~~G-i~KiNi~T~~~~--a~~~~~~ 1343 (1378)
T PLN02858 1314 ESLIKECIENG-VRKFNVNTEVRT--AYMEALS 1343 (1378)
T ss_pred HHHHHHHHHcC-CeEEEeCHHHHH--HHHHHHh
Confidence 88999999999 455666666543 2444444
No 304
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.83 E-value=0.17 Score=47.62 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=90.6
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.-+|+.++++||++|-+.++. . +.-+ -..| +| +.. ..-+++.++.|-.++. -||.|.+-.
T Consensus 28 ~~sA~la~~aGF~al~~sg~~-v--A~sl-----G~pD--~~-~~t-~~e~~~~vrrI~~a~~-lPv~vD~dt------- 87 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAG-V--AASL-----GLPD--LG-ITT-LDEVLADARRITDAVD-LPVLVDIDT------- 87 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHH-H--HHhc-----CCCc--cc-ccc-HHHHHHHHHHHHhhcC-CceEEeccC-------
Confidence 457899999999999975432 1 1111 1122 11 111 1223444455555442 278887643
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccc----cCCc--hhhHHHHHHHH---HhcCC-cEEEe--------CCC-
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ----LTDK--SETQRSLLSMR---RAFEG-TFIAA--------GGY- 302 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~----~~~~--~~~~~~~~~ir---~~~~~-pvi~~--------Ggi- 302 (367)
+.++ ......-++.++++|+.-+|+-...... ...+ ........+|| +.-+. +++.+ |++
T Consensus 88 GfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld 166 (289)
T COG2513 88 GFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLD 166 (289)
T ss_pred CCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHH
Confidence 2233 4556678888999999999985443221 0111 11223344444 44332 33333 334
Q ss_pred -CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCCC
Q 017733 303 -SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAP 340 (367)
Q Consensus 303 -t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~~ 340 (367)
+.+-+..+++.| +|+|-. +.+.+++.++++.+..+
T Consensus 167 ~AI~Ra~AY~eAG-AD~if~--~al~~~e~i~~f~~av~ 202 (289)
T COG2513 167 DAIERAQAYVEAG-ADAIFP--EALTDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHHHcC-CcEEcc--ccCCCHHHHHHHHHhcC
Confidence 356678899999 999887 88899999999988764
No 305
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.82 E-value=0.11 Score=48.86 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCC-cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhH-HHHHHHH
Q 017733 212 ALEVVEAVVREIGA-ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQ-RSLLSMR 289 (367)
Q Consensus 212 ~~eii~aiR~~vg~-~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~-~~~~~ir 289 (367)
+.+.|+.+|+..+. ..|.|-.+ +.+++.+. .++|+|.|-+...+ +... ...+.++
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~------------tleea~~A----~~~GaDiI~LDn~~-------~e~l~~~v~~~~ 224 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE------------SLEEAKNA----MNAGADIVMCDNMS-------VEEIKEVVAYRN 224 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC------------CHHHHHHH----HHcCCCEEEECCCC-------HHHHHHHHHHhh
Confidence 36788888998874 35666443 34544433 35899988764331 1111 1222222
Q ss_pred Hhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 290 RAF-EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 290 ~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
... ++.+.++||+|++.+.++.+.| +|+|++|.....
T Consensus 225 ~~~~~~~ieAsGgIt~~ni~~ya~~G-vD~IsvG~l~~s 262 (273)
T PRK05848 225 ANYPHVLLEASGNITLENINAYAKSG-VDAISSGSLIHQ 262 (273)
T ss_pred ccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEeChhhcC
Confidence 212 3459999999999999999999 999999998763
No 306
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.82 E-value=1.6 Score=40.58 Aligned_cols=203 Identities=9% Similarity=0.007 Sum_probs=119.0
Q ss_pred CCccccCCeeeCC-ceeeCcCCCCccCCCCCCHHHHHHHHhhcC--CCeeEEEccceeCCCCCCCC-CCCcCCCHHhhhh
Q 017733 14 LTAYKMGQFNLSH-RMVLAPLTRIRSYNHIPQPHAILYYSQRTT--NGGFLIAEATGVSNTAQGYP-NTPGIWTKEQVEA 89 (367)
Q Consensus 14 f~Pl~ig~~~lkN-Riv~apm~~~~~~~g~~t~~~~~~y~~~a~--g~Glii~e~~~v~~~g~~~~-~~~~~~~~~~~~~ 89 (367)
.+.+++++....+ .++..|..-- |++.+.--.+..+ |+.++.-+..- |....+. ..++ .++
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE-------s~e~~~~~a~~~~~~g~~~~r~g~~k--pRts~~sf~G~G------~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE-------SYDHIRLAASSAKKLGYNYFRGGAYK--PRTSAASFQGLG------LQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC-------CHHHHHHHHHHHHHcCCCEEEecccC--CCCCCcccCCCC------HHH
Confidence 4456677776664 4445555432 3333222222232 55566665443 3333332 2233 358
Q ss_pred hhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017733 90 WKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAI 169 (367)
Q Consensus 90 ~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~ 169 (367)
++.|.+.+++.|..++-.+++ .+.+..+.
T Consensus 68 l~~L~~~~~~~Gl~~~Tev~d---------------------------------------------------~~~v~~~~ 96 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVSEIMS---------------------------------------------------ERQLEEAY 96 (250)
T ss_pred HHHHHHHHHHcCCCEEEeeCC---------------------------------------------------HHHHHHHH
Confidence 999999999999887755421 22334444
Q ss_pred HhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHH
Q 017733 170 EAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEAL 249 (367)
Q Consensus 170 ~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~ 249 (367)
+ ..|.++|-+.. .+. .++++++-+. | .||.++-.. ..+.++
T Consensus 97 e-~vdilqIgs~~-------------~~n--------------~~LL~~va~t-g-kPVilk~G~---------~~t~~e 137 (250)
T PRK13397 97 D-YLDVIQVGARN-------------MQN--------------FEFLKTLSHI-D-KPILFKRGL---------MATIEE 137 (250)
T ss_pred h-cCCEEEECccc-------------ccC--------------HHHHHHHHcc-C-CeEEEeCCC---------CCCHHH
Confidence 4 59999985532 222 5566666553 2 378887653 235778
Q ss_pred HHHHHHHhhhcCccEEEEec-CCcccc--CCchhhHHHHHHHHHhcCCcEEEeCCC-----C--HHHHHHHHHcCCCcEE
Q 017733 250 GLYMAKALNKFKLLYLHVIE-PRMIQL--TDKSETQRSLLSMRRAFEGTFIAAGGY-----S--RDEGNKAVAANYTDLV 319 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~-~~~~~~--~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t--~~~a~~~L~~G~~D~V 319 (367)
+...++.+.+.|..-|-+.+ +....+ .....+...+..+|+.+..||+..-.. . +.-+..+++.| +|.+
T Consensus 138 ~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~G-AdGl 216 (250)
T PRK13397 138 YLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVG-ANGI 216 (250)
T ss_pred HHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhC-CCEE
Confidence 88888888888875444444 332211 111234566778888888998874223 1 36688899999 8977
Q ss_pred ccc
Q 017733 320 AFG 322 (367)
Q Consensus 320 ~~g 322 (367)
++=
T Consensus 217 ~IE 219 (250)
T PRK13397 217 MME 219 (250)
T ss_pred EEE
Confidence 664
No 307
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.78 E-value=0.51 Score=43.65 Aligned_cols=146 Identities=14% Similarity=0.041 Sum_probs=89.4
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.-.|+.+.++|||+|-+-.. +....+ -..|. +.+ -+.-.+..+++|++.+..-||.+.+--
T Consensus 22 ~~sA~i~e~aG~dai~v~~s---~~a~~~-----G~pD~--~~v--tl~em~~~~~~I~r~~~~~pviaD~~~------- 82 (240)
T cd06556 22 YSMAKQFADAGLNVMLVGDS---QGMTVA-----GYDDT--LPY--PVNDVPYHVRAVRRGAPLALIVADLPF------- 82 (240)
T ss_pred HHHHHHHHHcCCCEEEEChH---HHHHhc-----CCCCC--CCc--CHHHHHHHHHHHHhhCCCCCEEEeCCC-------
Confidence 45678888999999997553 333222 11221 111 134567777888887753377775532
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCC------------------
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYS------------------ 303 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit------------------ 303 (367)
+.+.+.+++.+.++++.++|++.|++-.. ......++.+++.- ++|++=-+.+
T Consensus 83 G~g~~~~~~~~~~~~l~~aGa~gv~iED~--------~~~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 83 GAYGAPTAAFELAKTFMRAGAAGVKIEGG--------EWHIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred CCCcCHHHHHHHHHHHHHcCCcEEEEcCc--------HHHHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHH
Confidence 22335577888999999999999998543 11223345555442 4555332222
Q ss_pred -----HHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 304 -----RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 304 -----~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
.+.+..+.+.| +|+|.+- .. ++++.+++.+.-
T Consensus 154 ~~~~ai~Ra~ay~~AG-Ad~i~~e--~~-~~e~~~~i~~~~ 190 (240)
T cd06556 154 AGEQLIADALAYAPAG-ADLIVME--CV-PVELAKQITEAL 190 (240)
T ss_pred HHHHHHHHHHHHHHcC-CCEEEEc--CC-CHHHHHHHHHhC
Confidence 23356666788 9999884 33 889999998864
No 308
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.77 E-value=0.064 Score=48.30 Aligned_cols=82 Identities=22% Similarity=0.192 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 324 (367)
+.+++..+++.|.+.|+..++++..+ +.....++.+++.++.-+++.|.+ |+++++++++.| ++|+.. |
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fivs--P 87 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFIVS--P 87 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEC--C
Confidence 46778999999999999999997432 224567888888887667777887 999999999999 999854 3
Q ss_pred HHhCCchHHHHHhC
Q 017733 325 FLANPDLPKRFELN 338 (367)
Q Consensus 325 ~ladP~l~~k~~~g 338 (367)
. .||++.+..++-
T Consensus 88 ~-~~~~v~~~~~~~ 100 (204)
T TIGR01182 88 G-LTPELAKHAQDH 100 (204)
T ss_pred C-CCHHHHHHHHHc
Confidence 3 388888877653
No 309
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.75 E-value=0.46 Score=45.10 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHh-CCCEEEEecccchHHHhhcCcccccCCCCCC-CchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcc
Q 017733 160 DFRLAARNAIEA-GFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-GSLENRCRFALEVVEAVVREIGAERVGMRLSPYAE 237 (367)
Q Consensus 160 ~f~~aA~~a~~a-GfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-gs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~ 237 (367)
.+.+-++.+.++ |.+||-+.+.-| |+- -+.+.|.+++..++++++ |..+|.+=++.
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstG----------------E~~~Lt~~Er~~~~~~~~~~~~---~~~~viagv~~--- 79 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTG----------------EGFLLSVEERKQIAEIVAEAAK---GKVTLIAHVGS--- 79 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCc----------------CcccCCHHHHHHHHHHHHHHhC---CCCeEEeccCC---
Confidence 445555566667 999999876443 322 245667666555555443 22245442322
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEe-----CC--CCHHHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAA-----GG--YSRDEGNK 309 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~-----Gg--it~~~a~~ 309 (367)
.+.+++.++++..++.|+|.+-+..+.+..+ +......+.+.|.+++ +.||+.- .| ++++...+
T Consensus 80 -------~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~-~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~ 151 (288)
T cd00954 80 -------LNLKESQELAKHAEELGYDAISAITPFYYKF-SFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLE 151 (288)
T ss_pred -------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHH
Confidence 3467789999999999999998876655432 2333456677888888 7887643 23 37888888
Q ss_pred HHH
Q 017733 310 AVA 312 (367)
Q Consensus 310 ~L~ 312 (367)
+.+
T Consensus 152 L~~ 154 (288)
T cd00954 152 LFE 154 (288)
T ss_pred Hhc
Confidence 875
No 310
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.75 E-value=0.13 Score=44.94 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhCCcc-eEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAER-VGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~-i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.+.++++|+..++.+ |.|.... .+++.+ ..++|+|.|-+...+. .......+.++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~------------~ee~~e----a~~~g~d~I~lD~~~~------~~~~~~v~~l~~ 123 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN------------LEEAEE----ALEAGADIIMLDNMSP------EDLKEAVEELRE 123 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS------------HHHHHH----HHHTT-SEEEEES-CH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC------------HHHHHH----HHHhCCCEEEecCcCH------HHHHHHHHHHhh
Confidence 5788899999988764 6665532 344433 3347899988764411 112234455554
Q ss_pred hc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 291 AF-EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 291 ~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
.. ++.+.++||++++...++.+.| +|++++|.....
T Consensus 124 ~~~~v~ie~SGGI~~~ni~~ya~~g-vD~isvg~~~~~ 160 (169)
T PF01729_consen 124 LNPRVKIEASGGITLENIAEYAKTG-VDVISVGSLTHS 160 (169)
T ss_dssp HTTTSEEEEESSSSTTTHHHHHHTT--SEEEECHHHHS
T ss_pred cCCcEEEEEECCCCHHHHHHHHhcC-CCEEEcChhhcC
Confidence 43 3568899999999999999999 999999986543
No 311
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=95.73 E-value=0.046 Score=50.06 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=42.1
Q ss_pred hhcCccEEEEecCCccccCCchhhH--HHHHHHH------HhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 258 NKFKLLYLHVIEPRMIQLTDKSETQ--RSLLSMR------RAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 258 ~~~Gvd~i~v~~~~~~~~~~~~~~~--~~~~~ir------~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.+.|+|+|+++-+.|.......... ..+..++ .....-|-++.|++.+....+.+--.+.=|.+|..++++-
T Consensus 142 ~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~A 221 (239)
T PF03740_consen 142 KELGADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARA 221 (239)
T ss_dssp HHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHH
T ss_pred HHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHH
Confidence 3567788887766543322211111 1122222 2345678888999988888888877799999999998864
No 312
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=95.72 E-value=0.22 Score=45.54 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=45.4
Q ss_pred hhcCccEEEEecCCccccCCchhhHHHHHHH------HHhcCCcEEEeCCCCHHHHHHHHHcCC-CcEEcccHHHHhCC
Q 017733 258 NKFKLLYLHVIEPRMIQLTDKSETQRSLLSM------RRAFEGTFIAAGGYSRDEGNKAVAANY-TDLVAFGRLFLANP 329 (367)
Q Consensus 258 ~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i------r~~~~~pvi~~Ggit~~~a~~~L~~G~-~D~V~~gR~~ladP 329 (367)
.+.|+|+|+++-+.|...........-+..+ ......-|-++.|++.+....+.+.-. ++=|.+|..++++-
T Consensus 141 ~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~A 219 (237)
T TIGR00559 141 AEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADA 219 (237)
T ss_pred HHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHH
Confidence 3557888888777654322221111112222 233456688888889998887776644 78899999999874
No 313
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.71 E-value=0.23 Score=47.21 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC-CchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-GSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-gs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
+.+-+..+.+.|.|||-+.+.-| |+- -|.+.|.+++..+++++. |..+|.+=++
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstG----------------E~~~Ls~eEr~~l~~~~~~~~~---~~~pvi~gv~------ 77 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTG----------------EFFSLTPDEYAQVVRAAVEETA---GRVPVLAGAG------ 77 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCc----------------CcccCCHHHHHHHHHHHHHHhC---CCCCEEEecC------
Confidence 34444455669999999876543 322 366777777666665543 2225544222
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC--C--CCHHHHHHHHH
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG--G--YSRDEGNKAVA 312 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--g--it~~~a~~~L~ 312 (367)
. +.+++.++++..++.|+|.+-+..+.+..+ +......+.+.|.+.+++||+.-. + ++++...++.+
T Consensus 78 ----~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~-~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 78 ----Y-GTATAIAYAQAAEKAGADGILLLPPYLTEA-PQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred ----C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 2 356788999999999999998866655432 223344566778888888966542 3 37888888776
No 314
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.064 Score=48.20 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 324 (367)
..|++..+++.|.+.|++.|+++-++ +...+.++.+++.++.-+|+.|-+ ++++++++++.| ++|+.- |
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG-a~fiVs--P 92 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG-AQFIVS--P 92 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC-CCEEEC--C
Confidence 46889999999999999999997442 224577888999988778888887 999999999999 888753 1
Q ss_pred HHhCCchHHHHH
Q 017733 325 FLANPDLPKRFE 336 (367)
Q Consensus 325 ~ladP~l~~k~~ 336 (367)
- .||++++...
T Consensus 93 ~-~~~ev~~~a~ 103 (211)
T COG0800 93 G-LNPEVAKAAN 103 (211)
T ss_pred C-CCHHHHHHHH
Confidence 1 2445554443
No 315
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=95.69 E-value=0.12 Score=46.83 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHHHhcCCcE--EEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 286 LSMRRAFEGTF--IAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 286 ~~ir~~~~~pv--i~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
+.+++.-+.|| ++.||+ ||.+|.-+++-| ||.|.+|.+.+.-.+
T Consensus 199 ~~~~~~grLPVvnFAAGGvATPADAALMM~LG-adGVFVGSGIFKS~~ 245 (296)
T COG0214 199 KEVAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSN 245 (296)
T ss_pred HHHHHhCCCCeEeecccCcCChhHHHHHHHhC-CCeEEecccccCCCC
Confidence 34555445664 477898 999999999999 999999988775443
No 316
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.69 E-value=0.071 Score=48.37 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 324 (367)
+.+++..+++.|.+.|++.|+++-. .+.....++.+++.++.-+++.|-+ ++++++++++.| +||+.. |
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~-------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG-A~Fivs--P 94 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLR-------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG-AQFIVS--P 94 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC-CCEEEC--C
Confidence 4678999999999999999999722 1234567888888887667888887 899999999999 898876 3
Q ss_pred HHhCCchHHHHHh
Q 017733 325 FLANPDLPKRFEL 337 (367)
Q Consensus 325 ~ladP~l~~k~~~ 337 (367)
..||++.+..++
T Consensus 95 -~~~~~vi~~a~~ 106 (212)
T PRK05718 95 -GLTPPLLKAAQE 106 (212)
T ss_pred -CCCHHHHHHHHH
Confidence 356677777665
No 317
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.65 E-value=0.14 Score=50.44 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCC--hHHHHHHHHHHhhhcC---ccEEEEecCCccccCCc-h--
Q 017733 209 CRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSN--PEALGLYMAKALNKFK---LLYLHVIEPRMIQLTDK-S-- 279 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~--~~~~~~~l~~~L~~~G---vd~i~v~~~~~~~~~~~-~-- 279 (367)
.+...+.|+++| ++|++ .|.|..|.. + +... +.+++.++++.|++.+ +.|++ +| ... .
T Consensus 176 ~~~~~~~v~avr-~~G~~~~l~vDaN~~--w---~~~~~~~~~~A~~~~~~Le~~~~~~~~~iE--qP-----~~~~d~~ 242 (369)
T cd03314 176 VKWLSDRIRKLG-RPGYHPILHIDVYGT--I---GQAFDPDPDRAADYLATLEEAAAPFPLRIE--GP-----MDAGSRE 242 (369)
T ss_pred HHHHHHHHHHHh-hcCCCCEEEEEcCCc--c---ccccCCCHHHHHHHHHHHHHhcCCCcEEEe--cC-----CCCCcch
Confidence 344568899999 88876 566665531 0 0012 5678999999998752 44554 33 211 1
Q ss_pred hhHHHHHHHHHh-----cCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 280 ETQRSLLSMRRA-----FEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 280 ~~~~~~~~ir~~-----~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
.+.+..+.++++ +++||++...+ +++++.++++.+.+|+|.+
T Consensus 243 ~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~ 290 (369)
T cd03314 243 AQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQI 290 (369)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEe
Confidence 234567778888 47899888877 8999999999999999876
No 318
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=95.64 E-value=0.3 Score=44.56 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=45.8
Q ss_pred hhcCccEEEEecCCccccCCchhhHHHHHH------HHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 258 NKFKLLYLHVIEPRMIQLTDKSETQRSLLS------MRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 258 ~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~------ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.+.|+|+|+++-+.|............+.. .......-|-++.|++.+....+.+-..++=|.+|..++++-
T Consensus 141 ~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~A 218 (234)
T cd00003 141 KEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRA 218 (234)
T ss_pred HHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence 345777777776655332222111111222 223345567788888999888887777799999999999874
No 319
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.63 E-value=0.079 Score=47.61 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 324 (367)
+.+++..+++.|.+.|+..++++..+ +.....++.+++.++.-+++.|-+ |+++++++++.| ++|+.. |
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~FivS--P 83 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SRFIVS--P 83 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CCEEEC--C
Confidence 46788999999999999999997442 224466788888887668888887 999999999999 898876 3
Q ss_pred HHhCCchHHHHHhC
Q 017733 325 FLANPDLPKRFELN 338 (367)
Q Consensus 325 ~ladP~l~~k~~~g 338 (367)
..||++.+..++-
T Consensus 84 -~~~~~vi~~a~~~ 96 (201)
T PRK06015 84 -GTTQELLAAANDS 96 (201)
T ss_pred -CCCHHHHHHHHHc
Confidence 3677877776653
No 320
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.61 E-value=0.29 Score=46.88 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=79.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC-CchhhHhHHHHHHHHHHHHHhCCc
Q 017733 148 PLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-GSLENRCRFALEVVEAVVREIGAE 226 (367)
Q Consensus 148 ~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-gs~enr~r~~~eii~aiR~~vg~~ 226 (367)
.+..+.++.+++ ...+.|.|||-+.+.-| |+- -|.+.|.+++..++++ ++..
T Consensus 24 ~iD~~~l~~li~-------~l~~~Gv~Gi~~~GstG----------------E~~~Lt~eEr~~~~~~~~~~----~~~~ 76 (303)
T PRK03620 24 SFDEAAYREHLE-------WLAPYGAAALFAAGGTG----------------EFFSLTPDEYSQVVRAAVET----TAGR 76 (303)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECcCCc----------------CcccCCHHHHHHHHHHHHHH----hCCC
Confidence 355555555544 45568999999876543 332 3566777665555444 4333
Q ss_pred -ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC--C--
Q 017733 227 -RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG--G-- 301 (367)
Q Consensus 227 -~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--g-- 301 (367)
+|.+=++ . +.++++++++..++.|+|.+-+..+.+..+ +......+.+.|.+.++.||+.-. +
T Consensus 77 ~pvi~gv~----------~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~-~~~~i~~~f~~va~~~~lpi~lYn~~g~~ 144 (303)
T PRK03620 77 VPVIAGAG----------G-GTAQAIEYAQAAERAGADGILLLPPYLTEA-PQEGLAAHVEAVCKSTDLGVIVYNRDNAV 144 (303)
T ss_pred CcEEEecC----------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 4443222 2 357789999999999999998876655432 233344567778888889976542 2
Q ss_pred CCHHHHHHHH
Q 017733 302 YSRDEGNKAV 311 (367)
Q Consensus 302 it~~~a~~~L 311 (367)
++++...++.
T Consensus 145 l~~~~l~~L~ 154 (303)
T PRK03620 145 LTADTLARLA 154 (303)
T ss_pred CCHHHHHHHH
Confidence 3777777776
No 321
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.60 E-value=0.31 Score=45.76 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=76.8
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCC-chhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGG-SLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGg-s~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
++.|+.|.+||.=+|-.---- |. ..|. -|| ...| -.+.|++||+.+. -||.=++.-.
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~---------~~-~~~~--~~~v~R~~----~~~~I~~Ik~~V~-iPVIGi~K~~----- 75 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERV---------PA-DIRA--AGGVARMA----DPKMIKEIMDAVS-IPVMAKVRIG----- 75 (283)
T ss_pred HHHHHHHHHcCceEEeeeccC---------ch-hhhh--cCCeeecC----CHHHHHHHHHhCC-CCeEEeeehh-----
Confidence 678999999998777642111 11 1121 233 2222 3678899999983 3543223220
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEc
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 320 (367)
...-++.|.++|+|+|.-+.. ..| ...+...+|+.++.|+++ +--|.++|..+++.| +|+|+
T Consensus 76 ---------~~~Ea~~L~eaGvDiIDaT~r------~rP-~~~~~~~iK~~~~~l~MA-D~stleEal~a~~~G-ad~I~ 137 (283)
T cd04727 76 ---------HFVEAQILEALGVDMIDESEV------LTP-ADEEHHIDKHKFKVPFVC-GARNLGEALRRISEG-AAMIR 137 (283)
T ss_pred ---------HHHHHHHHHHcCCCEEeccCC------CCc-HHHHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCC-CCEEE
Confidence 134566788999999963322 111 346778888888666665 333899999999999 99998
Q ss_pred cc
Q 017733 321 FG 322 (367)
Q Consensus 321 ~g 322 (367)
-.
T Consensus 138 TT 139 (283)
T cd04727 138 TK 139 (283)
T ss_pred ec
Confidence 75
No 322
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.58 E-value=0.39 Score=49.06 Aligned_cols=124 Identities=19% Similarity=0.127 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCC
Q 017733 157 IVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSP 234 (367)
Q Consensus 157 ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~ 234 (367)
+++.|++ .+.++|.|.+.|..+. |..+-+...++++|++-..- .|++-+++
T Consensus 98 vv~~fv~---~a~~~Gidi~RIfd~l------------------------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp 150 (499)
T PRK12330 98 VVDRFVE---KSAENGMDVFRVFDAL------------------------NDPRNLEHAMKAVKKVGKHAQGTICYTVSP 150 (499)
T ss_pred HHHHHHH---HHHHcCCCEEEEEecC------------------------ChHHHHHHHHHHHHHhCCeEEEEEEEecCC
Confidence 4455554 4457899999987654 22456777888888876532 35555565
Q ss_pred CccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc--CCcEEEeC----CCCHHHHH
Q 017733 235 YAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF--EGTFIAAG----GYSRDEGN 308 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi~~G----git~~~a~ 308 (367)
..+.+...++++.+.+.|+|.|.+..-. ...........++.+|+.+ ++||-.=. |+......
T Consensus 151 ---------~~t~e~~~~~a~~l~~~Gad~I~IkDta--Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~l 219 (499)
T PRK12330 151 ---------IHTVEGFVEQAKRLLDMGADSICIKDMA--ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLM 219 (499)
T ss_pred ---------CCCHHHHHHHHHHHHHcCCCEEEeCCCc--cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHH
Confidence 2357888999999999999999875321 1111222446778899988 46654322 22466778
Q ss_pred HHHHcCCCcEE
Q 017733 309 KAVAANYTDLV 319 (367)
Q Consensus 309 ~~L~~G~~D~V 319 (367)
.+++.| +|.|
T Consensus 220 aAieAG-ad~v 229 (499)
T PRK12330 220 KAIEAG-VDVV 229 (499)
T ss_pred HHHHcC-CCEE
Confidence 899999 7766
No 323
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.58 E-value=0.55 Score=44.66 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=79.1
Q ss_pred HHHHHHHHHHH-hCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 160 DFRLAARNAIE-AGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 160 ~f~~aA~~a~~-aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
.+.+-.+.+.+ +|.+||-+.+.-| +| +--|.+.|.+++..+++. ++.. +|.+=++
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstG----E~-----------~~Ls~eEr~~~~~~~~~~----~~~~~~viagvg---- 81 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTG----EA-----------FLLSTEEKKQVLEIVAEE----AKGKVKLIAQVG---- 81 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcc----cc-----------ccCCHHHHHHHHHHHHHH----hCCCCCEEecCC----
Confidence 34444556667 9999999876443 11 223556676655555554 4333 4554332
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe-----CC--CCHHHHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA-----GG--YSRDEGNKA 310 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~-----Gg--it~~~a~~~ 310 (367)
..+.++++++++..++.|+|.+-+..+.+..+ +......+.+.|.+.++.||+.- .| ++++...++
T Consensus 82 ------~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~-~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L 154 (293)
T PRK04147 82 ------SVNTAEAQELAKYATELGYDAISAVTPFYYPF-SFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNEL 154 (293)
T ss_pred ------CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC-CHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHH
Confidence 23467889999999999999999887755432 22334456777888888897654 23 378888877
Q ss_pred HHc
Q 017733 311 VAA 313 (367)
Q Consensus 311 L~~ 313 (367)
.+.
T Consensus 155 ~~~ 157 (293)
T PRK04147 155 FTL 157 (293)
T ss_pred hcC
Confidence 743
No 324
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=95.56 E-value=0.26 Score=46.29 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCC-chhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGG-SLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGg-s~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
.+.|+.|.+||.=+|-.---- |. .-|.. || ...|. .+.|++||+++. -||.=++.-.
T Consensus 20 ~eqa~iae~aga~avm~le~~---------p~-d~r~~--ggv~R~~~----p~~I~~I~~~V~-iPVig~~kig----- 77 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERV---------PA-DIRAS--GGVARMSD----PKMIKEIMDAVS-IPVMAKVRIG----- 77 (287)
T ss_pred HHHHHHHHHcCceEEEeeccC---------ch-hhHhc--CCeeecCC----HHHHHHHHHhCC-CCEEEEeecc-----
Confidence 678999999998777531111 11 12333 45 33443 467888888883 3654333320
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEc
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 320 (367)
...-++.|+++|+|+|+-++. ..| ..++...+|+.++.|+++ |--|.++|...++.| +|+|.
T Consensus 78 ---------h~~Ea~~L~~~GvDiIDeTe~------lrP-ade~~~~~K~~f~vpfma-d~~~l~EAlrai~~G-admI~ 139 (287)
T TIGR00343 78 ---------HFVEAQILEALGVDYIDESEV------LTP-ADWTFHIDKKKFKVPFVC-GARDLGEALRRINEG-AAMIR 139 (287)
T ss_pred ---------HHHHHHHHHHcCCCEEEccCC------CCc-HHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCC-CCEEe
Confidence 123466788999999964332 111 345677788888777766 333899999999999 99998
Q ss_pred cc
Q 017733 321 FG 322 (367)
Q Consensus 321 ~g 322 (367)
--
T Consensus 140 Tt 141 (287)
T TIGR00343 140 TK 141 (287)
T ss_pred cc
Confidence 76
No 325
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.43 Score=44.13 Aligned_cols=132 Identities=23% Similarity=0.234 Sum_probs=77.9
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC---cceEEEeCCC-cc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA---ERVGMRLSPY-AE 237 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~---~~i~vrls~~-~~ 237 (367)
..+++.+.+.|.|.|-+|+..| .+.+++.++...+ ..++|-.... ++
T Consensus 79 ~~~~~~~~~~g~d~vtvH~~~G-----------------------------~~~~~~~~e~~~~~~~~vl~vT~lts~~~ 129 (240)
T COG0284 79 ALAAKAAADLGADAVTVHAFGG-----------------------------FDMLRAAKEALEAGGPFVLAVTSLTSMGE 129 (240)
T ss_pred HHHHHHhhhcCCcEEEEeCcCC-----------------------------HHHHHHHHHHHhhcCceEEEEEeCCCchh
Confidence 3444447789999999998664 5667777777654 2344433322 11
Q ss_pred c--cccC-CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCH------H--
Q 017733 238 C--AEAV-DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSR------D-- 305 (367)
Q Consensus 238 ~--~~~~-~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~------~-- 305 (367)
. ...+ .....+...++++.....|+|.+-.+ ....+.+|+... .-++.+-||.+ +
T Consensus 130 ~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~-------------~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~ 196 (240)
T COG0284 130 LQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCS-------------AEEVAAIREILGPDFLILTPGIGAGSQGGDQGR 196 (240)
T ss_pred hhhhhccccchHHHHHHHHHHHhccCCceEEEcC-------------HHHHHHHHHhcCCCcEEECCCcCcCcCCCCccc
Confidence 1 0111 12234556677777777788876532 234556777664 12444444422 1
Q ss_pred --HHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 306 --EGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 306 --~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
...+++..| +|++.+||+.+..++=...++
T Consensus 197 ~~t~~~A~~~G-ad~ivVGR~I~~a~~p~~a~~ 228 (240)
T COG0284 197 VMTPGEAVRAG-ADYIVVGRPITQAGDPVAAAR 228 (240)
T ss_pred ccCHHHHHhcC-CCEEEEChhhhcCCChHHHHH
Confidence 145667777 999999999999876544443
No 326
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.48 E-value=0.55 Score=45.58 Aligned_cols=101 Identities=12% Similarity=-0.028 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc-c--CC-ch--hhH
Q 017733 209 CRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ-L--TD-KS--ETQ 282 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~-~--~~-~~--~~~ 282 (367)
....++.++.+++.++ .+|.+.++.. +.+++.++++.++++|+|+|++.-..... . .. .. ...
T Consensus 86 ~d~~~~~i~~~~~~~~-~pvi~sI~g~----------~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~ 154 (334)
T PRK07565 86 PEEYLELIRRAKEAVD-IPVIASLNGS----------SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYL 154 (334)
T ss_pred HHHHHHHHHHHHHhcC-CcEEEEeccC----------CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHH
Confidence 3445666667776653 4788877642 34667889999999999999985321110 0 01 11 123
Q ss_pred HHHHHHHHhcCCcEEEe--CCC-CHHHHHH-HHHcCCCcEEcc
Q 017733 283 RSLLSMRRAFEGTFIAA--GGY-SRDEGNK-AVAANYTDLVAF 321 (367)
Q Consensus 283 ~~~~~ir~~~~~pvi~~--Ggi-t~~~a~~-~L~~G~~D~V~~ 321 (367)
..++.+++.+++||++- +.+ +..+..+ +.+.| +|+|.+
T Consensus 155 eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G-~dgI~~ 196 (334)
T PRK07565 155 DILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAG-ADGLVL 196 (334)
T ss_pred HHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcC-CCeEEE
Confidence 45678998889998866 344 3445444 44555 897766
No 327
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.47 E-value=0.72 Score=42.34 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=73.2
Q ss_pred HHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChH
Q 017733 168 AIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 168 a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~ 247 (367)
..++|+|-|-+|.=. ++ .-+.++++.||+.- -..|+=|+|. .+.
T Consensus 78 ~~~aGad~it~H~Ea---------------~~----------~~~~~~i~~Ik~~G--~kaGlalnP~---------T~~ 121 (229)
T PRK09722 78 LADAGADFITLHPET---------------IN----------GQAFRLIDEIRRAG--MKVGLVLNPE---------TPV 121 (229)
T ss_pred HHHcCCCEEEECccC---------------Cc----------chHHHHHHHHHHcC--CCEEEEeCCC---------CCH
Confidence 345799999999731 00 12457888888863 2568888883 355
Q ss_pred HHHHHHHHHhhhcCccEEEE--ecCCccccCCchhhHHHHHHHHHhc-----CCcEEEeCCCCHHHHHHHHHcCCCcEEc
Q 017733 248 ALGLYMAKALNKFKLLYLHV--IEPRMIQLTDKSETQRSLLSMRRAF-----EGTFIAAGGYSRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v--~~~~~~~~~~~~~~~~~~~~ir~~~-----~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 320 (367)
+....++.. +|++-+ .++.+......+....-++.+|+.. +..+-+=||++.+.+.++.+.| +|.+.
T Consensus 122 ~~l~~~l~~-----vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aG-ad~~V 195 (229)
T PRK09722 122 ESIKYYIHL-----LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAG-ADVFI 195 (229)
T ss_pred HHHHHHHHh-----cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEE
Confidence 555455543 455543 2333321111112222333444332 2336677999999999999999 99999
Q ss_pred ccHH-HHh-CCch
Q 017733 321 FGRL-FLA-NPDL 331 (367)
Q Consensus 321 ~gR~-~la-dP~l 331 (367)
+|+. ++. +++.
T Consensus 196 ~Gss~iF~~~~d~ 208 (229)
T PRK09722 196 VGTSGLFNLDEDI 208 (229)
T ss_pred EChHHHcCCCCCH
Confidence 9976 665 4554
No 328
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=95.44 E-value=0.11 Score=51.98 Aligned_cols=101 Identities=10% Similarity=0.180 Sum_probs=66.0
Q ss_pred HHHHHHHHHHh-------CCc-ceEEEeCCCcccccc--------CCCChHHHHHHHHHHh-hhcCccEEEEecCCcccc
Q 017733 213 LEVVEAVVREI-------GAE-RVGMRLSPYAECAEA--------VDSNPEALGLYMAKAL-NKFKLLYLHVIEPRMIQL 275 (367)
Q Consensus 213 ~eii~aiR~~v-------g~~-~i~vrls~~~~~~~~--------~~~~~~~~~~~l~~~L-~~~Gvd~i~v~~~~~~~~ 275 (367)
.+.|+.+|+++ |++ .|++.....+.|.+. ....+.+++.++.+.| ++.++.||+ +|.
T Consensus 213 ~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iE--dPl---- 286 (408)
T cd03313 213 EEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIE--DPF---- 286 (408)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEE--eCC----
Confidence 45556666666 666 588888654433211 1123567777777765 458888877 331
Q ss_pred CCchhhHHHHHHHHHhc--CCcEEEeCCC--CHHHHHHHHHcCCCcEEcc
Q 017733 276 TDKSETQRSLLSMRRAF--EGTFIAAGGY--SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 276 ~~~~~~~~~~~~ir~~~--~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~ 321 (367)
.+.+....+.+++.+ ++||++...+ +++++.++++.+.+|.|.+
T Consensus 287 --~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~i 334 (408)
T cd03313 287 --DEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLI 334 (408)
T ss_pred --CCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEE
Confidence 122345567788887 6777666544 6999999999999998864
No 329
>PRK06852 aldolase; Validated
Probab=95.42 E-value=0.56 Score=44.86 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCC--CH----HHHHHHHH-cCCCc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGY--SR----DEGNKAVA-ANYTD 317 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi--t~----~~a~~~L~-~G~~D 317 (367)
..+.....++.-.++|+|+|-+--++- ... ...+..+.+-+.. ++||+..||= +. +...++|+ .| +.
T Consensus 186 ~~~~ia~aaRiaaELGADIVKv~y~~~---~~~-g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aG-a~ 260 (304)
T PRK06852 186 DPHLIAGAAGVAACLGADFVKVNYPKK---EGA-NPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISG-AS 260 (304)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCCCc---CCC-CCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcC-Cc
Confidence 345566677777899999998632210 000 1224455566666 8897777774 43 34567777 56 89
Q ss_pred EEcccHHHHhCCch
Q 017733 318 LVAFGRLFLANPDL 331 (367)
Q Consensus 318 ~V~~gR~~ladP~l 331 (367)
.|.+||=.+..|+-
T Consensus 261 Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 261 GNATGRNIHQKPLD 274 (304)
T ss_pred eeeechhhhcCCCc
Confidence 99999999998654
No 330
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.42 E-value=0.33 Score=46.63 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC-CchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-GSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-gs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
.+.+-+....++|.+||-+.+.-| |+- -+.+.|.+++..+++. ++.. +|.+=++.
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstG----------------E~~~Lt~eEr~~v~~~~~~~----~~grvpvi~Gv~~--- 86 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFG----------------ECATLTWEEKQAFVATVVET----VAGRVPVFVGATT--- 86 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccc----------------cchhCCHHHHHHHHHHHHHH----hCCCCCEEEEecc---
Confidence 344445556679999999877554 322 3566676555555444 4433 55553332
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEe------C-CCCHHHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAA------G-GYSRDEGNK 309 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~------G-git~~~a~~ 309 (367)
.+.++++++++..++.|+|.+-+..+.+..+ +......+.+.|.+++ +.||+.- | .++++...+
T Consensus 87 -------~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~-~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~ 158 (309)
T cd00952 87 -------LNTRDTIARTRALLDLGADGTMLGRPMWLPL-DVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAE 158 (309)
T ss_pred -------CCHHHHHHHHHHHHHhCCCEEEECCCcCCCC-CHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHH
Confidence 2467799999999999999998877755432 2333455677888888 5887643 2 236777777
Q ss_pred HHH
Q 017733 310 AVA 312 (367)
Q Consensus 310 ~L~ 312 (367)
+.+
T Consensus 159 L~~ 161 (309)
T cd00952 159 LAQ 161 (309)
T ss_pred Hhc
Confidence 763
No 331
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.36 E-value=0.26 Score=46.69 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+.+.+-++...++|.|||-+.+..| +|. --|.+.|.++ ++.+++.++.. +|.+-++.
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstG----E~~-----------~Lt~~Er~~l----~~~~~~~~~~~~~vi~gv~~--- 79 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTG----EFY-----------SLTDEERKEL----LEIVVEAAAGRVPVIAGVGA--- 79 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTT----TGG-----------GS-HHHHHHH----HHHHHHHHTTSSEEEEEEES---
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc----ccc-----------cCCHHHHHHH----HHHHHHHccCceEEEecCcc---
Confidence 4566666677789999999876543 221 1244556554 45555555544 56665554
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC-----C--CCHHHHHHH
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG-----G--YSRDEGNKA 310 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G-----g--it~~~a~~~ 310 (367)
.+.++++++++..++.|+|.+-+..+.+... +......+.+.|.+.++.|++.-. + ++++...++
T Consensus 80 -------~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~-s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L 151 (289)
T PF00701_consen 80 -------NSTEEAIELARHAQDAGADAVLVIPPYYFKP-SQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARL 151 (289)
T ss_dssp -------SSHHHHHHHHHHHHHTT-SEEEEEESTSSSC-CHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHhhcCceEEEEeccccccc-hhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHH
Confidence 3578899999999999999998877755432 233344567778888888866432 2 267777777
Q ss_pred HHc
Q 017733 311 VAA 313 (367)
Q Consensus 311 L~~ 313 (367)
.+.
T Consensus 152 ~~~ 154 (289)
T PF00701_consen 152 AKI 154 (289)
T ss_dssp HTS
T ss_pred hcC
Confidence 653
No 332
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.34 E-value=0.061 Score=48.13 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHH
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
.+++..+++.|.+.|+..++++..+ +...+.++.+++.++.-+++.|.+ |.++++++++.| ++|+.. |
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG-A~FivS--P- 87 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG-AQFIVS--P- 87 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEE--S-
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC-CCEEEC--C-
Confidence 4668889999999999999997542 224567888888887778888888 999999999999 898876 3
Q ss_pred HhCCchHHHHHhC
Q 017733 326 LANPDLPKRFELN 338 (367)
Q Consensus 326 ladP~l~~k~~~g 338 (367)
-.||++.+..++.
T Consensus 88 ~~~~~v~~~~~~~ 100 (196)
T PF01081_consen 88 GFDPEVIEYAREY 100 (196)
T ss_dssp S--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 3677777776643
No 333
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.34 E-value=0.93 Score=43.19 Aligned_cols=121 Identities=11% Similarity=0.093 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECA 239 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~ 239 (367)
+.+-+..+.+.|+|||-+.+.-| +| +--|.+.|.+++..+++. ++.. +|.+=++
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstG----E~-----------~~Lt~eEr~~v~~~~~~~----~~g~~pvi~gv~------ 82 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTG----EF-----------FSLTPAEYEQVVEIAVST----AKGKVPVYTGVG------ 82 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCc----Cc-----------ccCCHHHHHHHHHHHHHH----hCCCCcEEEecC------
Confidence 34444455679999999876543 11 123556676555555544 4333 4444222
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC--C--CCHHHHHHHHH
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG--G--YSRDEGNKAVA 312 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--g--it~~~a~~~L~ 312 (367)
. ..++++++++..++.|+|.+-+..+.+..+ +......+.+.|.++++.||+.-. + ++++...++.+
T Consensus 83 ----~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~-s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 83 ----G-NTSDAIEIARLAEKAGADGYLLLPPYLING-EQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred ----c-cHHHHHHHHHHHHHhCCCEEEECCCCCCCC-CHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 2 367789999999999999998876655432 233345567778888888966442 2 37888888875
No 334
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.33 E-value=0.75 Score=43.83 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC-CchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-GSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-gs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
+.+-+....+.|.+||-+.+.-| |+- -|.+.|.+++..++++++ |..+|.+=++
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstG----------------E~~~Ls~~Er~~l~~~~~~~~~---g~~pvi~gv~------ 77 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSG----------------EPGSLTLEERKQAIENAIDQIA---GRIPFAPGTG------ 77 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCc----------------ccccCCHHHHHHHHHHHHHHhC---CCCcEEEECC------
Confidence 33444455578999999876543 332 366777766666665543 2225544233
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEe------CC-CCHHHHHHHH
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAA------GG-YSRDEGNKAV 311 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~------Gg-it~~~a~~~L 311 (367)
..+.++++++++..++.|+|.+-+..+.+..+ +......+.+.|.+++ +.||+.- |. ++++...++.
T Consensus 78 ----~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~-~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~ 152 (294)
T TIGR02313 78 ----ALNHDETLELTKFAEEAGADAAMVIVPYYNKP-NQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR 152 (294)
T ss_pred ----cchHHHHHHHHHHHHHcCCCEEEEcCccCCCC-CHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 23567789999999999999998877655432 2333456677788888 7887643 22 3788888877
Q ss_pred H
Q 017733 312 A 312 (367)
Q Consensus 312 ~ 312 (367)
+
T Consensus 153 ~ 153 (294)
T TIGR02313 153 K 153 (294)
T ss_pred h
Confidence 5
No 335
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.29 E-value=0.23 Score=47.41 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=63.6
Q ss_pred HHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc
Q 017733 216 VEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT 295 (367)
Q Consensus 216 i~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p 295 (367)
.+.+|+..+ .++++.+-.. . ..+...+.++.+++.|++.|.++......... .....++.+++.+++|
T Consensus 107 ~~~i~~~~~-~~~~~ql~~~--------~-~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--~~~~~i~~l~~~~~~p 174 (299)
T cd02809 107 LEEVAAAAP-GPRWFQLYVP--------R-DREITEDLLRRAEAAGYKALVLTVDTPVLGRR--LTWDDLAWLRSQWKGP 174 (299)
T ss_pred HHHHHHhcC-CCeEEEEeec--------C-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--CCHHHHHHHHHhcCCC
Confidence 334554433 5677766431 1 23445667788888899998876442211111 2356788999999999
Q ss_pred EEEeCCCCHHHHHHHHHcCCCcEEcc
Q 017733 296 FIAAGGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 296 vi~~Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
|++-+-.+++++..+.+.| +|.|.+
T Consensus 175 vivK~v~s~~~a~~a~~~G-~d~I~v 199 (299)
T cd02809 175 LILKGILTPEDALRAVDAG-ADGIVV 199 (299)
T ss_pred EEEeecCCHHHHHHHHHCC-CCEEEE
Confidence 9988767999999999999 998866
No 336
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=95.23 E-value=3.9 Score=42.67 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=125.6
Q ss_pred CHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCC
Q 017733 44 QPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPN 122 (367)
Q Consensus 44 t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~ 122 (367)
+.....--.+... |.||.-||..+.+... . | ..++|...++++++... |-++++-....|-.-...+.
T Consensus 276 ~~~d~~~~~~~ga~GiGL~RtEfl~l~~~~--~---P--~e~eq~~~y~~i~~~~~--~~pv~iRtlDig~DK~~~~~-- 344 (565)
T TIGR01417 276 TVDDVEGAERNGGEGIGLFRTEFLYMSRDQ--L---P--TEEEQFAAYKTVLEAME--SDAVIVRTLDIGGDKELPYL-- 344 (565)
T ss_pred CHHHHHHHHhCCCCEEEeeechHhhhCCCC--C---C--CHHHHHHHHHHHHHHhC--CCceEEECCCCCCccccccc--
Confidence 4444444444444 7899999999987431 1 1 35788999999988875 55788888877632111110
Q ss_pred CCCCcccC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCC
Q 017733 123 GEAPISST-SKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEY 201 (367)
Q Consensus 123 ~~~~~~ps-~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~y 201 (367)
.. |. ..|..+ ..|+ .+..+. .++.+.-.+|..+|.+.|..+|-+ |..+...+
T Consensus 345 ---~~-~~E~NP~LG-~Rgi------R~~l~~-~~lf~~QlrAI~ra~~~G~~~Im~-------------PmV~t~eE-- 397 (565)
T TIGR01417 345 ---NF-PKEENPFLG-YRAI------RLALER-EEILRTQLRAILRASAYGKLRIMF-------------PMVATVEE-- 397 (565)
T ss_pred ---CC-CCCCCcccc-chhh------hhcccC-HHHHHHHHHHHHHHHhcCCCeEEe-------------cCCCCHHH--
Confidence 00 11 111111 0010 111111 245666678888888889888876 55554433
Q ss_pred CCchhhHhHHHHHHHHHHHHHhC-------Cc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc
Q 017733 202 GGSLENRCRFALEVVEAVVREIG-------AE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI 273 (367)
Q Consensus 202 Ggs~enr~r~~~eii~aiR~~vg-------~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~ 273 (367)
.+.+.++++....... +. ++++=+ + +.. +...++.+.+ |+|++.+...+..
T Consensus 398 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mI-----------E-tpa-av~~~d~ia~-~vDf~sIGtnDLs 456 (565)
T TIGR01417 398 -------IRAVKQELEEEKQELNDEGKAFDENIEVGVMI-----------E-IPS-AALIADHLAK-EVDFFSIGTNDLT 456 (565)
T ss_pred -------HHHHHHHHHHHHHHHHHhccccccCcEEEEEE-----------c-CHH-HHHhHHHHHh-hCCEEEEChhHHH
Confidence 4445555555433221 11 233322 1 122 4455666655 8999987432222
Q ss_pred c--------------cC--CchhhHHHHHHHHHh---cCCcEEEeCCC--CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 274 Q--------------LT--DKSETQRSLLSMRRA---FEGTFIAAGGY--SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 274 ~--------------~~--~~~~~~~~~~~ir~~---~~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
+ .+ ..|.....++.+.+. ..+||..+|.+ ++..+..++..| +++++++-..+.
T Consensus 457 qy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G-~~~lsv~~~~i~ 530 (565)
T TIGR01417 457 QYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLG-LRELSMSASSIL 530 (565)
T ss_pred HHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCC-CCEEEEChHhHH
Confidence 1 00 112223333333332 35789888887 799999999999 999999876654
No 337
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=95.19 E-value=0.45 Score=50.61 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEE-eCCCcccc-
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMR-LSPYAECA- 239 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vr-ls~~~~~~- 239 (367)
.+-|+...++|+++|-+. +-.+-||||+ +-+++||+.+. -||.-| +=. +.+.
T Consensus 73 ~~~a~~y~~~GA~aiSVl----------------Te~~~F~Gs~--------~~l~~vr~~v~-~PvLrKDFIi-d~~QI 126 (695)
T PRK13802 73 AALAREYEQGGASAISVL----------------TEGRRFLGSL--------DDFDKVRAAVH-IPVLRKDFIV-TDYQI 126 (695)
T ss_pred HHHHHHHHHcCCcEEEEe----------------cCcCcCCCCH--------HHHHHHHHhCC-CCEEeccccC-CHHHH
Confidence 555666778999999864 3455689995 45667777763 233321 100 0000
Q ss_pred --c--cC--------CCChHHHHHHHHHHhhhcCccE-EEEecC-------------------CccccCCchhhHHHHHH
Q 017733 240 --E--AV--------DSNPEALGLYMAKALNKFKLLY-LHVIEP-------------------RMIQLTDKSETQRSLLS 287 (367)
Q Consensus 240 --~--~~--------~~~~~~~~~~l~~~L~~~Gvd~-i~v~~~-------------------~~~~~~~~~~~~~~~~~ 287 (367)
. ++ .-.+.++...+.+...+.|++- ++||.. +... -.-+......
T Consensus 127 ~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~t---f~vd~~~t~~ 203 (695)
T PRK13802 127 WEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKD---LKVDVNKYNE 203 (695)
T ss_pred HHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCcc---ceeCHHHHHH
Confidence 0 00 0112344556666667778774 366532 1110 0112344566
Q ss_pred HHHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 288 MRRAFE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 288 ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
+.+.++ ..+|+-+|+ +++++..+...| +|.|.+|..++..||....++
T Consensus 204 L~~~ip~~~~~VsESGI~~~~d~~~l~~~G-~davLIGeslm~~~dp~~~~~ 254 (695)
T PRK13802 204 LAADLPDDVIKVAESGVFGAVEVEDYARAG-ADAVLVGEGVATADDHELAVE 254 (695)
T ss_pred HHhhCCCCcEEEEcCCCCCHHHHHHHHHCC-CCEEEECHHhhCCCCHHHHHH
Confidence 777664 346666888 899999999998 999999999999999666554
No 338
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.18 E-value=0.088 Score=50.67 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=49.6
Q ss_pred HHHHHHhhhc--CccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEccc
Q 017733 251 LYMAKALNKF--KLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 251 ~~l~~~L~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 322 (367)
.+.++.|.++ ++|+|.+....-. .....+.++.||+.++.+.+..|++ |+++++.+++.| +|.|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG-AD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG-ADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC-CCEEEEc
Confidence 4566667666 4999887533211 1224567889999998887777877 999999999999 9987655
No 339
>PRK00077 eno enolase; Provisional
Probab=95.16 E-value=0.16 Score=51.07 Aligned_cols=102 Identities=7% Similarity=0.172 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHh-------CCc-ceEEEeCCCccccccCC-----CChHHHHH-HHHHHhhhcCccEEEEecCCccccCC
Q 017733 212 ALEVVEAVVREI-------GAE-RVGMRLSPYAECAEAVD-----SNPEALGL-YMAKALNKFKLLYLHVIEPRMIQLTD 277 (367)
Q Consensus 212 ~~eii~aiR~~v-------g~~-~i~vrls~~~~~~~~~~-----~~~~~~~~-~l~~~L~~~Gvd~i~v~~~~~~~~~~ 277 (367)
..+.|+.||+++ |++ .|++.....+.+.+..+ ..+.+++. .+.+.+++.++.||+ +|.
T Consensus 215 ~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iE--dPl------ 286 (425)
T PRK00077 215 NEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIE--DGL------ 286 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEE--cCC------
Confidence 356666666665 766 58888865433321111 12344444 446666778888877 441
Q ss_pred chhhHHHHHHHHHhc--CCcEEEeCCC--CHHHHHHHHHcCCCcEEcc
Q 017733 278 KSETQRSLLSMRRAF--EGTFIAAGGY--SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 278 ~~~~~~~~~~ir~~~--~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~ 321 (367)
.+.+....+.+++.+ ++||++...+ +++++.++++.+.+|+|.+
T Consensus 287 ~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~i 334 (425)
T PRK00077 287 DENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILI 334 (425)
T ss_pred CCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEe
Confidence 122455667789888 5777666554 5999999999999998865
No 340
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.15 E-value=0.84 Score=42.34 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=85.9
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc--
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA-- 239 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~-- 239 (367)
.+-|+...++|+.+|=|. +-..-||||+ +-++.+|+.+. -||..|==..+.+.
T Consensus 64 ~~~A~~y~~~GA~aISVl----------------Te~~~F~Gs~--------~~l~~v~~~v~-~PvL~KDFIid~~QI~ 118 (247)
T PRK13957 64 VQIAKTYETLGASAISVL----------------TDQSYFGGSL--------EDLKSVSSELK-IPVLRKDFILDEIQIR 118 (247)
T ss_pred HHHHHHHHHCCCcEEEEE----------------cCCCcCCCCH--------HHHHHHHHhcC-CCEEeccccCCHHHHH
Confidence 556677788999999643 4455689995 45666666653 13322100000000
Q ss_pred -c--c--------CCCChHHHHHHHHHHhhhcCccE-EEEecC-------------------CccccCCchhhHHHHHHH
Q 017733 240 -E--A--------VDSNPEALGLYMAKALNKFKLLY-LHVIEP-------------------RMIQLTDKSETQRSLLSM 288 (367)
Q Consensus 240 -~--~--------~~~~~~~~~~~l~~~L~~~Gvd~-i~v~~~-------------------~~~~~~~~~~~~~~~~~i 288 (367)
. . ..-.+.++...+.+...+.|++- ++||.. +.... .-.......+
T Consensus 119 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~---~vd~~~~~~L 195 (247)
T PRK13957 119 EARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTF---QIHQNLVEEV 195 (247)
T ss_pred HHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccc---eECHHHHHHH
Confidence 0 0 00112344556666666777764 355531 11110 1123445567
Q ss_pred HHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 289 RRAFE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 289 r~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
...++ ..+|+-+|+ |+++++.+.. + +|.|.+|..++..++....+++
T Consensus 196 ~~~ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 196 AAFLPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred HhhCCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCCCCHHHHHHH
Confidence 77664 346777888 8999998764 5 9999999999999998777653
No 341
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.14 E-value=0.21 Score=47.29 Aligned_cols=108 Identities=9% Similarity=0.011 Sum_probs=68.7
Q ss_pred cccCCCCCCCc--hhhHhHHH---HHHHHHHHHHhCC-cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEE
Q 017733 194 VNDRTDEYGGS--LENRCRFA---LEVVEAVVREIGA-ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHV 267 (367)
Q Consensus 194 ~N~R~D~yGgs--~enr~r~~---~eii~aiR~~vg~-~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v 267 (367)
.|+|-+-+-+- ..|=.++. .+.|+++|+..+. ..|.|... +.+++.+. .++|+|.|-+
T Consensus 160 ~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~------------tleea~~a----~~agaDiImL 223 (290)
T PRK06559 160 YNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVE------------SLAAAEEA----AAAGADIIML 223 (290)
T ss_pred cccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECC------------CHHHHHHH----HHcCCCEEEE
Confidence 56776655543 34444443 5677777777763 35665442 34544443 3679998876
Q ss_pred ecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 268 IEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
..-+. .......+.+++ ++.+-++||+|++...++.+.| +|+|++|....
T Consensus 224 Dnmsp------e~l~~av~~~~~--~~~leaSGGI~~~ni~~yA~tG-VD~Is~galth 273 (290)
T PRK06559 224 DNMSL------EQIEQAITLIAG--RSRIECSGNIDMTTISRFRGLA-IDYVSSGSLTH 273 (290)
T ss_pred CCCCH------HHHHHHHHHhcC--ceEEEEECCCCHHHHHHHHhcC-CCEEEeCcccc
Confidence 53311 111122333332 4568899999999999999999 99999999776
No 342
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.12 E-value=0.53 Score=42.32 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCch
Q 017733 282 QRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDL 331 (367)
Q Consensus 282 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l 331 (367)
..+++.++.-++ +|++.+||++++.+.++|+.|.+ .++.|..+. +.++
T Consensus 132 ~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~-~~~ggs~l~-~~~~ 180 (201)
T PRK06015 132 AAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNV-VCVGGSWVA-PKEL 180 (201)
T ss_pred HHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCe-EEEEchhhC-Cchh
Confidence 467888888775 68999999999999999999855 444455554 4433
No 343
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=95.08 E-value=1.4 Score=41.07 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+++.+.++.+.+.|.|.||+-.. -+.. +. ....+.+++.++|+..+..|+.+-++...+
T Consensus 28 ~e~~~~~~~~~~~~aD~vElRlD------------------~l~~-~~-~~~~~~~~~~~l~~~~~~~PiI~T~R~~~e- 86 (253)
T PRK02412 28 EEVLAEALAISKYDADIIEWRAD------------------FLEK-IS-DVESVLAAAPAIREKFAGKPLLFTFRTAKE- 86 (253)
T ss_pred HHHHHHHHHHhhcCCCEEEEEec------------------hhhc-cC-CHHHHHHHHHHHHHhcCCCcEEEEECChhh-
Confidence 34455566666679999997543 2221 00 124567888999998865455544443221
Q ss_pred cccCCCChHHHHHHHHHHhhhcC-ccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC-CC--CH--HH----HH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFK-LLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG-GY--SR--DE----GN 308 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~G-vd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G-gi--t~--~~----a~ 308 (367)
+.....+.++..++.+.+.+.| +|||++.... ............+ .-+..||++- .+ || ++ .+
T Consensus 87 -GG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~-----~~~~~~~l~~~~~-~~~~kvI~S~H~f~~tP~~~~l~~~~~ 159 (253)
T PRK02412 87 -GGEIALSDEEYLALIKAVIKSGLPDYIDVELFS-----GKDVVKEMVAFAH-EHGVKVVLSYHDFEKTPPKEEIVERLR 159 (253)
T ss_pred -CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccC-----ChHHHHHHHHHHH-HcCCEEEEeeCCCCCCcCHHHHHHHHH
Confidence 1111234566677778888888 9999984221 1111111222222 2345677764 45 55 33 34
Q ss_pred HHHHcCCCcEEcccHHH
Q 017733 309 KAVAANYTDLVAFGRLF 325 (367)
Q Consensus 309 ~~L~~G~~D~V~~gR~~ 325 (367)
++...| +|+|=++...
T Consensus 160 ~~~~~g-aDivKia~~a 175 (253)
T PRK02412 160 KMESLG-ADIVKIAVMP 175 (253)
T ss_pred HHHHhC-CCEEEEEecC
Confidence 444556 8877776543
No 344
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.06 E-value=0.11 Score=51.69 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=50.5
Q ss_pred HHHhhhcC-ccEEEEecCCcccc-CCch--hhHHHHHHHHHhc--------CCcEEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 254 AKALNKFK-LLYLHVIEPRMIQL-TDKS--ETQRSLLSMRRAF--------EGTFIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 254 ~~~L~~~G-vd~i~v~~~~~~~~-~~~~--~~~~~~~~ir~~~--------~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
++.+++.| +|.|.+. ...... ...+ .....+..+++.+ ++||++.||| |++.+..++..| +|+|.
T Consensus 169 A~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alG-Ad~V~ 246 (418)
T cd04742 169 AELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALG-ADFIV 246 (418)
T ss_pred HHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcC-CcEEe
Confidence 34455666 5888774 322111 1111 1222344455554 6899999999 999999999999 99999
Q ss_pred ccHHHHhCCc
Q 017733 321 FGRLFLANPD 330 (367)
Q Consensus 321 ~gR~~ladP~ 330 (367)
+|..+++=++
T Consensus 247 ~GT~flat~E 256 (418)
T cd04742 247 TGSINQCTVE 256 (418)
T ss_pred eccHHHhCcc
Confidence 9999999664
No 345
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.04 E-value=0.082 Score=47.91 Aligned_cols=74 Identities=19% Similarity=0.040 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 249 LGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 249 ~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
+..++++.+++.|+++||+..-.... ......++.+++.+++||+.-+.+ ++++++.+++.| +|.|.++-..+.
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~----~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G-ad~v~l~~~~~~ 106 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYF----QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAALD 106 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCcccc----CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC-CCEEEEeeccCC
Confidence 35678999999999999986322110 112356788888889998876666 788999999999 999987666543
No 346
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.00 E-value=1 Score=41.22 Aligned_cols=125 Identities=15% Similarity=0.054 Sum_probs=79.9
Q ss_pred CCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017733 81 IWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVND 160 (367)
Q Consensus 81 ~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 160 (367)
...++.++...++++.+++.|..+.+.+.+.+|.. + +.
T Consensus 101 ~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~------------------------------~------------~~ 138 (237)
T PF00682_consen 101 KSREEALERIEEAVKYAKELGYEVAFGCEDASRTD------------------------------P------------EE 138 (237)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSS------------------------------H------------HH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCceEeCcccccccc------------------------------H------------HH
Confidence 34457788999999999999999988776644311 1 46
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
+.+.++++.++|.|.|-|-=. .|.. .+.-+.++++++|+..++.+|++-.+- ++
T Consensus 139 ~~~~~~~~~~~g~~~i~l~Dt-------------------~G~~---~P~~v~~lv~~~~~~~~~~~l~~H~Hn--d~-- 192 (237)
T PF00682_consen 139 LLELAEALAEAGADIIYLADT-------------------VGIM---TPEDVAELVRALREALPDIPLGFHAHN--DL-- 192 (237)
T ss_dssp HHHHHHHHHHHT-SEEEEEET-------------------TS-S----HHHHHHHHHHHHHHSTTSEEEEEEBB--TT--
T ss_pred HHHHHHHHHHcCCeEEEeeCc-------------------cCCc---CHHHHHHHHHHHHHhccCCeEEEEecC--Cc--
Confidence 778888888999999987533 3322 244578999999999986456654432 22
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE 280 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~ 280 (367)
+ ...+..++ ..++|+++|+.+-..+....+..+
T Consensus 193 ---G--la~An~la--A~~aGa~~id~t~~GlG~~~Gn~~ 225 (237)
T PF00682_consen 193 ---G--LAVANALA--ALEAGADRIDGTLGGLGERAGNAP 225 (237)
T ss_dssp ---S---HHHHHHH--HHHTT-SEEEEBGGGGSSTTSB-B
T ss_pred ---c--chhHHHHH--HHHcCCCEEEccCccCCCCCCCcc
Confidence 1 22222222 246899999987665554444433
No 347
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=94.99 E-value=0.55 Score=43.02 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=44.9
Q ss_pred hhcCccEEEEecCCccccCCchhhHHHHHH------HHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 258 NKFKLLYLHVIEPRMIQLTDKSETQRSLLS------MRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 258 ~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~------ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.+.|+|+|+++-+.|........ ..-++. .......-|-++.|++.+....+.+-..++=|.+|..++++-
T Consensus 144 ~~~GAd~VELhTG~yA~a~~~~~-~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 144 AEVGADRIELHTGPYADAKTEAE-AAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHhCcCEEEEechhhhcCCCcch-HHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHH
Confidence 34577788887666533222111 111222 223345668888889998888766656688899999999875
No 348
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.97 E-value=3.3 Score=40.07 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=72.2
Q ss_pred chhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCcccccc------CCCChHHHHHHHHHHhhhcC----ccEEEEecCC
Q 017733 204 SLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECAEA------VDSNPEALGLYMAKALNKFK----LLYLHVIEPR 271 (367)
Q Consensus 204 s~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~~~------~~~~~~~~~~~l~~~L~~~G----vd~i~v~~~~ 271 (367)
+++...+.+.++++..+..-=.- .|+ ++...++.... .....++++.+|++ +.| +|.+-++-++
T Consensus 133 ~~eeNi~~T~~vve~Ah~~gi~VEaElG-~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~---~Tg~i~pvD~LAvsiGt 208 (340)
T cd00453 133 SLQENIEICSKYLERMSKIGMTLEIELG-CTGGEEDGVDNSHMDASALYTQPEDVDYAYT---ELSKISPRFTIAASFGN 208 (340)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEE-ecCCccCCcccccccccccCCCHHHHHHHHH---HhCCCCcceEEeeecCc
Confidence 47888899999998888762110 233 22222221000 01224677777775 457 9999998887
Q ss_pred ccccCCc-h--hhHHHHHHHHHhc---------CCcEEEeCC--CCHHHHHHHHHcCCCcEEcccHH
Q 017733 272 MIQLTDK-S--ETQRSLLSMRRAF---------EGTFIAAGG--YSRDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 272 ~~~~~~~-~--~~~~~~~~ir~~~---------~~pvi~~Gg--it~~~a~~~L~~G~~D~V~~gR~ 324 (367)
....+.. . -..+.++.|++.+ ++|++.=|+ ++.++..++++.| +-=|=++..
T Consensus 209 ~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~G-i~KiNi~Te 274 (340)
T cd00453 209 VHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYG-VVKMNIDTD 274 (340)
T ss_pred cccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcC-CeEEEcccH
Confidence 6655532 2 2456788898887 678666554 5788999999999 444444443
No 349
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.94 E-value=0.15 Score=49.70 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=46.7
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEccc
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 322 (367)
.+.++.|.++|+|+|.+....-+ .....+.++.||+.++ +|||+++-.|.+.++++++.| +|.|=+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aG-ad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAG-ADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT--SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcC-CCEEEEe
Confidence 56777888899999987533221 1224567889999997 677764434999999999999 9987554
No 350
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.89 E-value=0.093 Score=46.97 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 282 QRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 282 ~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
..+++.++.-++ ++++.+||++++++.++|+.| +..|++|..++-
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag-~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAG-AVAVGGGSWLFP 181 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTST-TBSEEEESGGGS
T ss_pred HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCC-CEEEEECchhcC
Confidence 467888887775 689999999999999999999 888999887654
No 351
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.89 E-value=1.2 Score=42.12 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC-CchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG-GSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG-gs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
.+.+-+.+..+.|.|||-+.+.-| |+- -|.+.|.+++..+++ +++. |.+=++
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstG----------------E~~~Lt~eEr~~l~~~~~~----~~~~--vi~gvg----- 73 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTG----------------LGPSLSFQEKLELLKAYSD----ITDK--VIFQVG----- 73 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCC----------------CcccCCHHHHHHHHHHHHH----HcCC--EEEEeC-----
Confidence 445555666779999999876544 322 356667665555544 4432 222122
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe------C-CCCHHHHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA------G-GYSRDEGNKAV 311 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~------G-git~~~a~~~L 311 (367)
..+.++++++++..++.|+|.+-+..+.+....+......+.+.|.+ +.|++.- | .++++..+++.
T Consensus 74 -----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~ 146 (279)
T cd00953 74 -----SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIK 146 (279)
T ss_pred -----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHH
Confidence 23467899999999999999998877755432122223345566666 7786633 3 24788888888
Q ss_pred Hc
Q 017733 312 AA 313 (367)
Q Consensus 312 ~~ 313 (367)
++
T Consensus 147 ~~ 148 (279)
T cd00953 147 KA 148 (279)
T ss_pred hc
Confidence 64
No 352
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.82 E-value=0.38 Score=45.44 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
+.+.|+.+|+..++..|.|... +.+++.+. .++|+|.|-+...+ ........+.+++.
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~------------~leea~~a----~~agaDiI~LDn~~------~e~l~~~v~~l~~~ 226 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE------------SLEDALKA----AKAGADIIMLDNMT------PEEIREVIEALKRE 226 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC------------CHHHHHHH----HHcCcCEEEECCCC------HHHHHHHHHHHHhc
Confidence 5567788888776545666443 24444433 36899988765331 11112233445443
Q ss_pred c---CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 292 F---EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 292 ~---~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
- ++.+.++||++++..+++.+.| +|++++|....
T Consensus 227 ~~~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~galt~ 263 (278)
T PRK08385 227 GLRERVKIEVSGGITPENIEEYAKLD-VDVISLGALTH 263 (278)
T ss_pred CcCCCEEEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence 2 3458999999999999999999 99999999876
No 353
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.69 E-value=0.44 Score=45.06 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCC-cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGA-ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~-~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.+.|+++|+..+. ..|.|-.. +.+++.+. .++|+|.|-+..-+. .........+++
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv~------------slee~~ea----~~~gaDiImLDn~s~------e~l~~av~~~~~ 236 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVD------------RLDQIEPV----LAAGVDTIMLDNFSL------DDLREGVELVDG 236 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC------------CHHHHHHH----HhcCCCEEEECCCCH------HHHHHHHHHhCC
Confidence 45778888888874 24555443 24444333 368999887653311 111122333332
Q ss_pred hcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 291 AFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 291 ~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
+..+-++||+|++.+.++.+.| +|+|++|.....=|
T Consensus 237 --~~~leaSGgI~~~ni~~yA~tG-VD~Is~galths~~ 272 (281)
T PRK06543 237 --RAIVEASGNVNLNTVGAIASTG-VDVISVGALTHSVR 272 (281)
T ss_pred --CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence 2368899999999999999998 99999998665544
No 354
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=94.67 E-value=0.95 Score=41.07 Aligned_cols=140 Identities=21% Similarity=0.201 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEE
Q 017733 153 EIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMR 231 (367)
Q Consensus 153 eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vr 231 (367)
||...+..++++ +.++|+|.+=+|+..| ...+...+++.++. +.. .+.+.
T Consensus 60 DIg~tv~~~~~~---~~~~gad~~Tvh~~~G-------------------------~~~l~~~~~~~~~~-~~~~~~v~~ 110 (216)
T cd04725 60 DIPNTVAAAAEA---LLGLGADAVTVHPYGG-------------------------SDMLKAALEAAEEK-GKGLFAVTV 110 (216)
T ss_pred chHHHHHHHHHH---HHhcCCCEEEECCcCC-------------------------HHHHHHHHHHHhcc-CCeEEEEEc
Confidence 455555554444 4467999999998654 12233333333321 223 34455
Q ss_pred eCCCcc--ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCCCHH---
Q 017733 232 LSPYAE--CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGYSRD--- 305 (367)
Q Consensus 232 ls~~~~--~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~--- 305 (367)
++.... +.........+.+..+++...+.|++-+-++ ++ . ...+++.. +.-++.+.|+.++
T Consensus 111 lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~-~~---------~---~~~i~~~~~~~~~~ltPGI~~~~~~ 177 (216)
T cd04725 111 LSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCG-AT---------E---PEALRRALGPDFLILTPGIGAQGSG 177 (216)
T ss_pred CCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEEC-Cc---------c---hHHHHHhhCCCCeEEcCCcCCCCCc
Confidence 653211 1110111223445667777778886655432 11 1 11123332 3346777888655
Q ss_pred -------HHHHHHHcCCCcEEcccHHHHhCCchHHHH
Q 017733 306 -------EGNKAVAANYTDLVAFGRLFLANPDLPKRF 335 (367)
Q Consensus 306 -------~a~~~L~~G~~D~V~~gR~~ladP~l~~k~ 335 (367)
..++++..| +|++.+||+.+..++-...+
T Consensus 178 ~dq~r~~~~~~a~~~g-~~~ivvGR~I~~a~~p~~~~ 213 (216)
T cd04725 178 DDQKRGGTPEDAIRAG-ADYIVVGRPITQAADPVAAA 213 (216)
T ss_pred cccccccCHHHHHHcC-CcEEEEChhhccCCCHHHHH
Confidence 678889888 99999999999998855444
No 355
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.67 E-value=1 Score=43.67 Aligned_cols=144 Identities=14% Similarity=0.058 Sum_probs=77.6
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC--cceEEEeCCC-ccccc
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA--ERVGMRLSPY-AECAE 240 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~--~~i~vrls~~-~~~~~ 240 (367)
..+.|.+.|.|+|-++.- +|+..|+++ ++-+.+|.+++-. -|+.+-.-+- ....+
T Consensus 151 sVedAlrLGAdAV~~tvy-------------------~Gs~~E~~m---l~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~ 208 (348)
T PRK09250 151 SVEDALRLGAVAVGATIY-------------------FGSEESRRQ---IEEISEAFEEAHELGLATVLWSYLRNSAFKK 208 (348)
T ss_pred cHHHHHHCCCCEEEEEEe-------------------cCCHHHHHH---HHHHHHHHHHHHHhCCCEEEEecccCcccCC
Confidence 345588899999998762 244445443 3334444444422 1444322111 01110
Q ss_pred cCC-CChHHHHHHHHHHhhhcCccEEEEecCCc----ccc---------CCch---hhHHHHHHHHHhc---CCcEEEeC
Q 017733 241 AVD-SNPEALGLYMAKALNKFKLLYLHVIEPRM----IQL---------TDKS---ETQRSLLSMRRAF---EGTFIAAG 300 (367)
Q Consensus 241 ~~~-~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~----~~~---------~~~~---~~~~~~~~ir~~~---~~pvi~~G 300 (367)
... ....+.....++.-.+.|+|+|-+--+.- ... +... ...+..+.+.+.. ++||+..|
T Consensus 209 ~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAG 288 (348)
T PRK09250 209 DGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSG 288 (348)
T ss_pred cccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeC
Confidence 000 01234555667777889999997743210 000 0000 1112334444555 67888887
Q ss_pred CC--CH----HHHHHH---HHcCCCcEEcccHHHHhCCc
Q 017733 301 GY--SR----DEGNKA---VAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 301 gi--t~----~~a~~~---L~~G~~D~V~~gR~~ladP~ 330 (367)
|= +. +..+.+ ++.| +..|.+||=.+..|+
T Consensus 289 G~k~~~~e~L~~v~~a~~~i~aG-a~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 289 GASKGEDDLLDAVRTAVINKRAG-GMGLIIGRKAFQRPM 326 (348)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcC-CcchhhchhhhcCCc
Confidence 74 33 345677 8877 899999999999885
No 356
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.65 E-value=0.65 Score=44.98 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=75.8
Q ss_pred HHHHhCCCEEEEecccchHHHhhcCcccccC----CCCCCC-c---hhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 167 NAIEAGFDGVEIHGANGYLIDQFMKDQVNDR----TDEYGG-S---LENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 167 ~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R----~D~yGg-s---~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
.|++||+|+|+++- |....+.++..+.+ .+.|.| + +-.+..|..|-.+.+.+.+...-|.+=-++++
T Consensus 24 ~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfd-- 98 (329)
T TIGR03569 24 AAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLSTPFD-- 98 (329)
T ss_pred HHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEEEeCC--
Confidence 34679999999986 77888887765441 224444 2 34556677778888887774321111113321
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHH---HHHHHHcC
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDE---GNKAVAAN 314 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~---a~~~L~~G 314 (367)
. .-++.|++.|++++-|..+... +..+++.+.+ ...||+.+-|. |.++ |.+.+.+.
T Consensus 99 --------~----~svd~l~~~~v~~~KIaS~~~~-------n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~ 158 (329)
T TIGR03569 99 --------L----ESADFLEDLGVPRFKIPSGEIT-------NAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDA 158 (329)
T ss_pred --------H----HHHHHHHhcCCCEEEECccccc-------CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHc
Confidence 1 1234566789999888655332 4456666665 47899988887 6654 44555543
Q ss_pred CC
Q 017733 315 YT 316 (367)
Q Consensus 315 ~~ 316 (367)
..
T Consensus 159 G~ 160 (329)
T TIGR03569 159 GT 160 (329)
T ss_pred CC
Confidence 34
No 357
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.64 E-value=0.55 Score=43.42 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcc-
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAE- 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~- 237 (367)
++..+.+++..++|.+||.|-.+. -..+.|+++|++. .+|.-|+....-
T Consensus 89 ~~~~~~~~~l~~aGa~gv~iED~~----------------------------~~~~~i~ai~~a~--i~ViaRtd~~pq~ 138 (240)
T cd06556 89 TAAFELAKTFMRAGAAGVKIEGGE----------------------------WHIETLQMLTAAA--VPVIAHTGLTPQS 138 (240)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCcH----------------------------HHHHHHHHHHHcC--CeEEEEeCCchhh
Confidence 355778888889999999986531 1345666776653 456667764210
Q ss_pred ------cccc-CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Q 017733 238 ------CAEA-VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKA 310 (367)
Q Consensus 238 ------~~~~-~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~ 310 (367)
+... ......+++++-++.++++|+|.|-+... ..+.++.+.+.+++|++++|.=.--+. |.
T Consensus 139 ~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~----------~~e~~~~i~~~~~~P~~~~gag~~~dg-q~ 207 (240)
T cd06556 139 VNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV----------PVELAKQITEALAIPLAGIGAGSGTDG-QF 207 (240)
T ss_pred hhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHhCCCCEEEEecCcCCCc-eE
Confidence 0000 01234667888899999999998876311 346688899999999888764210011 11
Q ss_pred HHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 311 VAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
|-- .|++++.... -|-|+++..+
T Consensus 208 lv~--~d~lg~~~~~--~p~f~~~~~~ 230 (240)
T cd06556 208 LVL--ADAFGITGGH--IPKFAKNFHA 230 (240)
T ss_pred EeH--HhhhcccCCC--CCchHHHHhh
Confidence 111 2455554442 5666666554
No 358
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.64 E-value=0.67 Score=43.47 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=81.7
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
..++|.++|.|.|.|..+. |+..|+ ..++-+.+.-...+.++++..|+. | +.|+++..+-+
T Consensus 76 di~~a~~~g~~~i~i~~~~--------S~~~~~--~~~~~~~~e~~~~~~~~i~~a~~~-G---~~v~~~~eda~----- 136 (262)
T cd07948 76 DARIAVETGVDGVDLVFGT--------SPFLRE--ASHGKSITEIIESAVEVIEFVKSK-G---IEVRFSSEDSF----- 136 (262)
T ss_pred HHHHHHHcCcCEEEEEEec--------CHHHHH--HHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEEEeeC-----
Confidence 3566778999999986643 222122 233444444455556666666654 2 34455543211
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-----CHHHHHHHHHcCCCcE
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-----SRDEGNKAVAANYTDL 318 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t~~~a~~~L~~G~~D~ 318 (367)
..+.+...++++.+.+.|++-+.+.... + ...+.......+.+++.+++|+ ..... ....+..+++.| +|.
T Consensus 137 r~~~~~l~~~~~~~~~~g~~~i~l~Dt~-G-~~~P~~v~~~~~~~~~~~~~~i-~~H~Hn~~Gla~an~~~a~~aG-~~~ 212 (262)
T cd07948 137 RSDLVDLLRVYRAVDKLGVNRVGIADTV-G-IATPRQVYELVRTLRGVVSCDI-EFHGHNDTGCAIANAYAALEAG-ATH 212 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcC-C-CCCHHHHHHHHHHHHHhcCCeE-EEEECCCCChHHHHHHHHHHhC-CCE
Confidence 2346778889999999999988764321 1 1112234456788888887664 33332 356778899999 675
Q ss_pred E-----cccHH
Q 017733 319 V-----AFGRL 324 (367)
Q Consensus 319 V-----~~gR~ 324 (367)
| +||+.
T Consensus 213 vd~s~~GlGer 223 (262)
T cd07948 213 IDTTVLGIGER 223 (262)
T ss_pred EEEeccccccc
Confidence 5 55554
No 359
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=94.57 E-value=4.1 Score=38.19 Aligned_cols=144 Identities=15% Similarity=0.027 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEE
Q 017733 153 EIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMR 231 (367)
Q Consensus 153 eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vr 231 (367)
||...+..|++++. ...|+|+|-+|+..| . ..+...++..++ .+.. .|.++
T Consensus 97 DIpnTv~~~a~a~~--~~~g~D~vTvh~~~G--------------------~-----d~l~~~~~~~~~-~~~~v~Vlvl 148 (261)
T TIGR02127 97 DIGSTASAYAKAWL--GHLHADALTVSPYLG--------------------L-----DSLRPFLEYARA-NGAGIFVLVK 148 (261)
T ss_pred ChHHHHHHHHHHHH--hhcCCCEEEECCcCC--------------------H-----HHHHHHHHHHhh-cCCEEEEEEe
Confidence 66667777777744 368999999996443 1 112223333222 1222 46677
Q ss_pred eCC-Cc-cccccCC--CCh-HHHHHHHHHHhhhc----CccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC
Q 017733 232 LSP-YA-ECAEAVD--SNP-EALGLYMAKALNKF----KLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY 302 (367)
Q Consensus 232 ls~-~~-~~~~~~~--~~~-~~~~~~l~~~L~~~----Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi 302 (367)
.|- .. ++.+... +.+ .+...++++.+.+. |.+-+-+ .. + ....++.+|+.++.-.+.+=|+
T Consensus 149 TSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~-gA------T---~p~e~~~iR~~~~~~~il~PGi 218 (261)
T TIGR02127 149 TSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVV-GA------T---SPGDLLRLRIEMPTAPFLVPGF 218 (261)
T ss_pred CCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEE-CC------C---CHHHHHHHHHhCCCCeEEeCCc
Confidence 774 22 2332211 112 24455556655433 4443332 11 1 1345677888764434555554
Q ss_pred -----CHHHHHHHHHcCCCc-EEcccHHHHhCCchHHH
Q 017733 303 -----SRDEGNKAVAANYTD-LVAFGRLFLANPDLPKR 334 (367)
Q Consensus 303 -----t~~~a~~~L~~G~~D-~V~~gR~~ladP~l~~k 334 (367)
++++....+.....| ++.+||+.+..++-...
T Consensus 219 gaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a 256 (261)
T TIGR02127 219 GAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSA 256 (261)
T ss_pred CCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHH
Confidence 466666655443478 89999998887764443
No 360
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.56 E-value=0.31 Score=46.03 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
+.+.++++|+..+...|.|-+. +.+++.+ ..++|+|.|-++.-+ ........+.+++.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~------------tleea~e----a~~~GaDiI~lDn~~------~e~l~~~v~~l~~~ 232 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEAD------------TIEQALT----VLQASPDILQLDKFT------PQQLHHLHERLKFF 232 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECC------------CHHHHHH----HHHcCcCEEEECCCC------HHHHHHHHHHHhcc
Confidence 5678899998876545666443 2444433 446899998876321 11122334444432
Q ss_pred -cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 292 -FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 292 -~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
-+..+-++||++++.+.++.+.| +|++++|-...+-|
T Consensus 233 ~~~~~leasGGI~~~ni~~ya~~G-vD~is~gal~~a~~ 270 (277)
T TIGR01334 233 DHIPTLAAAGGINPENIADYIEAG-IDLFITSAPYYAAP 270 (277)
T ss_pred CCCEEEEEECCCCHHHHHHHHhcC-CCEEEeCcceecCc
Confidence 23468899999999999999999 99999998776666
No 361
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=94.56 E-value=0.18 Score=50.61 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 293 EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 293 ~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
++||++.||| |++.+..++..| +|+|.+|..+++=++
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLG-AdgV~~GT~flat~E 261 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLG-ADFIVTGSVNQCTVE 261 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcC-CcEEEeccHHHhCcc
Confidence 6889999999 999999999999 999999999999553
No 362
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.54 E-value=1.1 Score=42.46 Aligned_cols=76 Identities=9% Similarity=-0.024 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccC-----Cch-hhHHHHHHHHHhcCCcEEEe--CCCCH----HHHHHHHHc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLT-----DKS-ETQRSLLSMRRAFEGTFIAA--GGYSR----DEGNKAVAA 313 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~-----~~~-~~~~~~~~ir~~~~~pvi~~--Ggit~----~~a~~~L~~ 313 (367)
+.+++.+.++.+++.|+|+|++.-+...... ..+ ...+.++.+|+.++.||++= .+++. +.++.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3567888999999999999988644221111 011 12345778888888886643 44563 345556667
Q ss_pred CCCcEEccc
Q 017733 314 NYTDLVAFG 322 (367)
Q Consensus 314 G~~D~V~~g 322 (367)
| +|+|.+.
T Consensus 189 G-ad~i~~~ 196 (289)
T cd02810 189 G-ADGLTAI 196 (289)
T ss_pred C-CCEEEEE
Confidence 7 9999874
No 363
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.53 E-value=1.1 Score=41.45 Aligned_cols=153 Identities=19% Similarity=0.132 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.-.|+.+.++|||+|-+.+.. .+-.+ -..|.---++ .-..+.++.|.+.+. .||.+.+.-
T Consensus 19 ~~sA~~~e~~G~~ai~~s~~~---~~~s~-----G~pD~~~~~~----~e~~~~~~~I~~~~~-~Pv~~D~~~------- 78 (243)
T cd00377 19 ALSARLAERAGFKAIYTSGAG---VAASL-----GLPDGGLLTL----DEVLAAVRRIARAVD-LPVIADADT------- 78 (243)
T ss_pred HHHHHHHHHcCCCEEEeccHH---HHHhc-----CCCCCCcCCH----HHHHHHHHHHHhhcc-CCEEEEcCC-------
Confidence 457888888999999975432 22111 1122101122 223444444444442 266665532
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCcccc----C-----CchhhHHHHHHHHHhcC----CcEEEe--------C
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL----T-----DKSETQRSLLSMRRAFE----GTFIAA--------G 300 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~----~-----~~~~~~~~~~~ir~~~~----~pvi~~--------G 300 (367)
+.++ .+.+.+.++.+.+.|++.+++-....... . +.......++.+++..+ .+|++- .
T Consensus 79 G~g~-~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 79 GYGN-ALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCC-HHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 1233 36677889999999999999954432111 0 11112233444444433 345554 2
Q ss_pred CC--CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhC
Q 017733 301 GY--SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 301 gi--t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g 338 (367)
++ ..+-++.+.+.| +|+|.+--+ .+++..+++.+.
T Consensus 158 ~~~eai~Ra~ay~~AG-AD~v~v~~~--~~~~~~~~~~~~ 194 (243)
T cd00377 158 GLDEAIERAKAYAEAG-ADGIFVEGL--KDPEEIRAFAEA 194 (243)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEeCCC--CCHHHHHHHHhc
Confidence 33 255678899999 999998533 388888888876
No 364
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.52 E-value=1.6 Score=41.02 Aligned_cols=131 Identities=12% Similarity=0.111 Sum_probs=83.5
Q ss_pred HhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017733 85 EQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLA 164 (367)
Q Consensus 85 ~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~a 164 (367)
+.++..+++++.++++|..+.+++.++.+. .+ +.+.+.
T Consensus 106 ~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~------------------------------~~------------~~~~~~ 143 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYEVFFNLMAISGY------------------------------SD------------EELLEL 143 (266)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEEEeecCC------------------------------CH------------HHHHHH
Confidence 467889999999999999999888764320 01 456778
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVD 243 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~ 243 (367)
++.+.++|.|.|-|- |.+|... ++-+.++++++|+.++++ +|++ ..++++
T Consensus 144 ~~~~~~~g~~~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~~~~~i~~--H~Hn~~----- 194 (266)
T cd07944 144 LELVNEIKPDVFYIV-------------------DSFGSMY---PEDIKRIISLLRSNLDKDIKLGF--HAHNNL----- 194 (266)
T ss_pred HHHHHhCCCCEEEEe-------------------cCCCCCC---HHHHHHHHHHHHHhcCCCceEEE--EeCCCc-----
Confidence 888888999998863 4445432 445689999999999763 5665 433222
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+ ...+..++ ..++|+++++.+-..++...+..+....+..++.
T Consensus 195 G--la~AN~la--A~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~ 237 (266)
T cd07944 195 Q--LALANTLE--AIELGVEIIDATVYGMGRGAGNLPTELLLDYLNN 237 (266)
T ss_pred c--HHHHHHHH--HHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHH
Confidence 1 22222222 2368999999876655543333333333444443
No 365
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.49 E-value=1.5 Score=42.41 Aligned_cols=147 Identities=14% Similarity=-0.012 Sum_probs=78.7
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCC------CCchhhHhHH----HHHHHHHHHHHhC--CcceE
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEY------GGSLENRCRF----ALEVVEAVVREIG--AERVG 229 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~y------Ggs~enr~r~----~~eii~aiR~~vg--~~~i~ 229 (367)
.+..+.+..+||-+|++..-.-.-+.|--.| +.|.-++ ...+.|+.-+ +...++.+++... ..+|+
T Consensus 26 ~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~--~pr~~~~~~~~~~~~~~in~~g~~n~g~~~~~~~i~~~~~~~~~pvi 103 (325)
T cd04739 26 LDNIRRLEDAGAGAIVLPSLFEEQIEREAQE--LDRFLTYGSSFAEALSYFPEYGRYNLGPEEYLELIRRAKRAVSIPVI 103 (325)
T ss_pred HHHHHHHHHCCCcEEEecccchhhhhhcCCC--CCceEeecccCcCcccccccccccCcCHHHHHHHHHHHHhccCCeEE
Confidence 4555567789999999876431100111111 1121110 1222333322 2333333333221 23677
Q ss_pred EEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc-cCCc-----hhhHHHHHHHHHhcCCcEEEe--CC
Q 017733 230 MRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ-LTDK-----SETQRSLLSMRRAFEGTFIAA--GG 301 (367)
Q Consensus 230 vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~-~~~~-----~~~~~~~~~ir~~~~~pvi~~--Gg 301 (367)
+-++. .+.+++.++++.++++|+|+|++.-..... +... ....+.++.+++.+++||++= ..
T Consensus 104 ~si~g----------~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~ 173 (325)
T cd04739 104 ASLNG----------VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF 173 (325)
T ss_pred EEeCC----------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC
Confidence 76643 235778889999999999999886542111 1110 112356778888888997764 33
Q ss_pred CC--HHHHHHHHHcCCCcEEcc
Q 017733 302 YS--RDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 302 it--~~~a~~~L~~G~~D~V~~ 321 (367)
++ .+.++.+.+.| +|.|.+
T Consensus 174 ~~~~~~~a~~l~~~G-adgi~~ 194 (325)
T cd04739 174 FSALAHMAKQLDAAG-ADGLVL 194 (325)
T ss_pred ccCHHHHHHHHHHcC-CCeEEE
Confidence 43 34456666666 887766
No 366
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.46 E-value=0.6 Score=43.69 Aligned_cols=45 Identities=18% Similarity=-0.008 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCC
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGG 301 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg 301 (367)
.+..++-++.++++|++.|-+- . .+ ...++.|.+.+++|+|+.|.
T Consensus 159 a~~~i~~A~a~e~AGA~~ivlE-~--------vp-~~~a~~It~~l~iP~iGIGa 203 (263)
T TIGR00222 159 AKKLLEDALALEEAGAQLLVLE-C--------VP-VELAAKITEALAIPVIGIGA 203 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc-C--------Cc-HHHHHHHHHhCCCCEEeecc
Confidence 3456677888999999988652 1 12 36788999999999988763
No 367
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.45 E-value=0.27 Score=44.66 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCC---cEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEG---TFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~---pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
+.+++..+++.|.+.|+..++++-.+ +...+.++.+++.++. -+++.|-+ |+++++++++.| ++|+..
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG-A~Fivs 94 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG-AQFIVS 94 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC-CCEEEC
Confidence 46788999999999999999997442 2245678888888742 36777877 999999999999 899873
Q ss_pred cHHHHhCCchHHHHHhC
Q 017733 322 GRLFLANPDLPKRFELN 338 (367)
Q Consensus 322 gR~~ladP~l~~k~~~g 338 (367)
| -.||++.+..++-
T Consensus 95 --P-~~~~~v~~~~~~~ 108 (213)
T PRK06552 95 --P-SFNRETAKICNLY 108 (213)
T ss_pred --C-CCCHHHHHHHHHc
Confidence 3 4677777776653
No 368
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=94.42 E-value=0.93 Score=43.15 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+-+|+.+.++||++|-+.+. | ++--+ -..| +|.+. ..-.++.++.|.+++. -||.+.+-.
T Consensus 25 ~lSAri~e~aGf~ai~~ss~-~--va~sl-----G~pD--~g~l~--~~e~~~~~~~I~~~~~-lPv~aD~d~------- 84 (290)
T TIGR02321 25 PLVAKLAEQAGFGGIWGSGF-E--LSASY-----AVPD--ANILS--MSTHLEMMRAIASTVS-IPLIADIDT------- 84 (290)
T ss_pred HHHHHHHHHcCCCEEEECHH-H--HHHHC-----CCCC--cccCC--HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 56788999999999997543 2 11001 1233 22211 2234555566666652 378876632
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCcccc-----CC-c--hhhHHHHHHHHHhc----CCcEEEeCCC-------
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL-----TD-K--SETQRSLLSMRRAF----EGTFIAAGGY------- 302 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~-----~~-~--~~~~~~~~~ir~~~----~~pvi~~Ggi------- 302 (367)
+.+++. ...+.++.++++|+.-|++-....... .. . .+...+..+|+... +.+++.+.+.
T Consensus 85 GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~ 163 (290)
T TIGR02321 85 GFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_pred CCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Confidence 223444 467788999999999999965432111 01 1 11223444444332 2234444332
Q ss_pred ----CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 303 ----SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 303 ----t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
..+-++.+.+.| +|.|.+ -+.+.+|+.+.++.+.-
T Consensus 164 g~deAI~Ra~aY~eAG-AD~ifv-~~~~~~~~ei~~~~~~~ 202 (290)
T TIGR02321 164 GQQEAVRRGQAYEEAG-ADAILI-HSRQKTPDEILAFVKSW 202 (290)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEe-cCCCCCHHHHHHHHHhc
Confidence 123467888898 999988 22458899999988853
No 369
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.42 E-value=0.9 Score=43.28 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=89.0
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+-+|+.+.++||+++-+.+.. .+-. .--..|. | +.. ..-.++.++.|..++. -||.+.+-.
T Consensus 26 a~SArl~e~aGf~ai~~sg~~---~~as----~lG~pD~--g-~l~-~~e~~~~~~~I~~~~~-lPv~aD~dt------- 86 (294)
T TIGR02319 26 ALSAKVIQQAGFPAVHMTGSG---TSAS----MLGLPDL--G-FTS-VSEQAINAKNIVLAVD-VPVIMDADA------- 86 (294)
T ss_pred HHHHHHHHHcCCCEEEecHHH---HHHH----HcCCCCc--C-CCC-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 567889999999999864322 1111 0112231 1 111 1123555556666552 378876633
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccc----cCCc--hhhHHHHHHHHHhc---C-CcEEEeCC--------C-
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ----LTDK--SETQRSLLSMRRAF---E-GTFIAAGG--------Y- 302 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~----~~~~--~~~~~~~~~ir~~~---~-~pvi~~Gg--------i- 302 (367)
+.+++.. ..+.+++++++|+.-||+-...... ..++ .+...+..+|+... . .+++.+.+ +
T Consensus 87 GyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~d 165 (294)
T TIGR02319 87 GYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLD 165 (294)
T ss_pred CCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHH
Confidence 2234444 5678999999999999996543211 1111 11224444444332 2 23444433 2
Q ss_pred -CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 303 -SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 303 -t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
..+-+..+.+.| +|+|.+ +.+.+++.++++.+..
T Consensus 166 eaI~Ra~aY~eAG-AD~ifi--~~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 166 EAIRRSREYVAAG-ADCIFL--EAMLDVEEMKRVRDEI 200 (294)
T ss_pred HHHHHHHHHHHhC-CCEEEe--cCCCCHHHHHHHHHhc
Confidence 234567888898 999999 3478899999988753
No 370
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.28 E-value=1.1 Score=43.84 Aligned_cols=142 Identities=15% Similarity=0.036 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+.+++|.++|.|.|.+..+.- +. +...+.+-+.+.-...+.++|+..|+. |- .+.+-++..-.. +.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~S--------d~--h~~~n~~~t~~e~l~~~~~~v~~Ak~~-Gl-~v~~~is~~fg~-p~ 190 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASAS--------ES--FSKSNINCSIEESLVRYREVALAAKKH-SI-PVRGYVSCVVGC-PI 190 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecC--------HH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CC-eEEEEEEeeecC-Cc
Confidence 3555677889999998876542 22 122223344444444455566655554 21 222112210000 11
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-----CHHHHHHHHHcCCC
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-----SRDEGNKAVAANYT 316 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t~~~a~~~L~~G~~ 316 (367)
.+..+.+...++++.+.+.|+|.|.+..-. + ...+......++.+++.++.+.+..... ....+..+++.| +
T Consensus 191 ~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~-G-~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aG-a 267 (347)
T PLN02746 191 EGPVPPSKVAYVAKELYDMGCYEISLGDTI-G-VGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMG-I 267 (347)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEecCCc-C-CcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhC-C
Confidence 123357888999999999999998875321 1 1112224456788888887533454443 356778899999 7
Q ss_pred cEE
Q 017733 317 DLV 319 (367)
Q Consensus 317 D~V 319 (367)
|.|
T Consensus 268 ~~v 270 (347)
T PLN02746 268 STV 270 (347)
T ss_pred CEE
Confidence 765
No 371
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=94.20 E-value=0.39 Score=44.46 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=69.8
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCC----CCCCC----chhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcc
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRT----DEYGG----SLENRCRFALEVVEAVVREIGAERVGMRLSPYAE 237 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~----D~yGg----s~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~ 237 (367)
..|+++|+|+|+.+. |-...++++....+. +.+++ ++-++..|..|-..++.+.+...-|..=.++++
T Consensus 3 ~~A~~aGaDaVKFQ~---~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd- 78 (241)
T PF03102_consen 3 DAAAEAGADAVKFQT---FTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFD- 78 (241)
T ss_dssp HHHHHHT-SEEEEEE---B-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred HHHHHhCCCEEEEEE---EchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCC-
Confidence 346789999999875 556778877643322 12232 344677788888888888874322222224431
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHH---HHHHH-H
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDE---GNKAV-A 312 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~---a~~~L-~ 312 (367)
.+... .|++.|++++-|..+... +..+++.+.+ .+.|||.+-|. |.++ |.+.+ +
T Consensus 79 ----------~~s~d---~l~~~~~~~~KIaS~dl~-------n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~~~~~ 137 (241)
T PF03102_consen 79 ----------EESVD---FLEELGVPAYKIASGDLT-------NLPLLEYIAK-TGKPVILSTGMSTLEEIERAVEVLRE 137 (241)
T ss_dssp ----------HHHHH---HHHHHT-SEEEE-GGGTT--------HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHHHHHH
T ss_pred ----------HHHHH---HHHHcCCCEEEecccccc-------CHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHHHHHh
Confidence 11233 346678999988655332 4456666665 67899988887 6554 55666 6
Q ss_pred cCCCcEEcc
Q 017733 313 ANYTDLVAF 321 (367)
Q Consensus 313 ~G~~D~V~~ 321 (367)
.|..+++.+
T Consensus 138 ~~~~~l~ll 146 (241)
T PF03102_consen 138 AGNEDLVLL 146 (241)
T ss_dssp HCT--EEEE
T ss_pred cCCCCEEEE
Confidence 665665554
No 372
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.17 E-value=1.3 Score=44.84 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=78.2
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~ 245 (367)
++|.++|.|.|.|-.+.. . .+-+.+.++.+|+. |. .+.+-++... .+ .-
T Consensus 103 ~~A~~~Gvd~irif~~ln--------d----------------~~n~~~~v~~ak~~-G~-~v~~~i~~t~--~p---~~ 151 (448)
T PRK12331 103 QKSVENGIDIIRIFDALN--------D----------------VRNLETAVKATKKA-GG-HAQVAISYTT--SP---VH 151 (448)
T ss_pred HHHHHCCCCEEEEEEecC--------c----------------HHHHHHHHHHHHHc-CC-eEEEEEEeec--CC---CC
Confidence 345678999999876441 1 11255677777765 32 2222222210 00 13
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC----CCCHHHHHHHHHcCCCcEE--
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG----GYSRDEGNKAVAANYTDLV-- 319 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~L~~G~~D~V-- 319 (367)
+.+...++++.+.+.|+|.|.+....- ..........++.+|+.+++||-.=. |+....+..+++.| +|.|
T Consensus 152 ~~~~~~~~a~~l~~~Gad~I~i~Dt~G--~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaG-ad~vD~ 228 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADSICIKDMAG--ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAG-ADIIDT 228 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcC-CCEEEe
Confidence 467788999999999999998753211 11122234577889998887754422 23467788999999 7876
Q ss_pred ---cccHHHHhCCc
Q 017733 320 ---AFGRLFLANPD 330 (367)
Q Consensus 320 ---~~gR~~ladP~ 330 (367)
++|.+ ..||.
T Consensus 229 sv~glg~g-aGN~~ 241 (448)
T PRK12331 229 AISPFAGG-TSQPA 241 (448)
T ss_pred eccccCCC-cCCHh
Confidence 44554 55664
No 373
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=94.08 E-value=0.59 Score=42.72 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~ 240 (367)
..|...|...|.|.|.+|.-.|- .-||+ |-+|..+.-+.+....++..+.-. .+-||=... +
T Consensus 98 vaA~~IA~a~gA~FIRVN~~tg~-----------~~tdq--Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~--l-- 160 (263)
T COG0434 98 VAALAIAYAVGADFIRVNVLTGA-----------YATDQ--GIIEGNAAELARYRARLGSRVKVLADVHVKHAVH--L-- 160 (263)
T ss_pred HHHHHHHHhcCCCEEEEEeeece-----------Eeccc--ceecchHHHHHHHHHhccCCcEEEeecchhcccc--c--
Confidence 55667788899999998865531 12232 556666655555444444221100 122222221 1
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEc
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 320 (367)
..-+.+++ .-..++..+.|.+-++.... +.+++...++.+++..+.||+++.|.+++.+.++|+. +|.+.
T Consensus 161 --~~~~~~~~--v~dtver~~aDaVI~tG~~T----G~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~--adG~I 230 (263)
T COG0434 161 --GNRSLEEA--VKDTVERGLADAVIVTGSRT----GSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKI--ADGVI 230 (263)
T ss_pred --CCcCHHHH--HHHHHHccCCCEEEEecccC----CCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHH--cCceE
Confidence 11133332 33346677799998876533 3345677889999999999999999999999999987 89998
Q ss_pred ccHHH
Q 017733 321 FGRLF 325 (367)
Q Consensus 321 ~gR~~ 325 (367)
+|.-+
T Consensus 231 vgT~l 235 (263)
T COG0434 231 VGTSL 235 (263)
T ss_pred EEEEE
Confidence 88755
No 374
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.08 E-value=0.63 Score=41.16 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcce
Q 017733 149 LSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERV 228 (367)
Q Consensus 149 mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i 228 (367)
|=.++-++.|++|+ +||.+.+-+|+- -+++ ..++++.||+.- -.+
T Consensus 71 mMV~~Peq~V~~~a-------~agas~~tfH~E---------------~~q~-----------~~~lv~~ir~~G--mk~ 115 (224)
T KOG3111|consen 71 MMVENPEQWVDQMA-------KAGASLFTFHYE---------------ATQK-----------PAELVEKIREKG--MKV 115 (224)
T ss_pred EeecCHHHHHHHHH-------hcCcceEEEEEe---------------eccC-----------HHHHHHHHHHcC--Cee
Confidence 45666777777765 479999998862 2222 578899999862 256
Q ss_pred EEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEE--EEecCCccccCCchhhHHHHHHHHHhcCCcEE-EeCCCCHH
Q 017733 229 GMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYL--HVIEPRMIQLTDKSETQRSLLSMRRAFEGTFI-AAGGYSRD 305 (367)
Q Consensus 229 ~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i--~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi-~~Ggit~~ 305 (367)
++-|+| +.+++....++.. +|++ -..++.+...........-.+.+|+.++.+.| +-||++++
T Consensus 116 G~alkP---------gT~Ve~~~~~~~~-----~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ 181 (224)
T KOG3111|consen 116 GLALKP---------GTPVEDLEPLAEH-----VDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPS 181 (224)
T ss_pred eEEeCC---------CCcHHHHHHhhcc-----ccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcc
Confidence 777787 4456654444432 3443 22345443211111222345678888887766 77999999
Q ss_pred HHHHHHHcCCCcEEcccHHHHhCCc---hHHHHHh
Q 017733 306 EGNKAVAANYTDLVAFGRLFLANPD---LPKRFEL 337 (367)
Q Consensus 306 ~a~~~L~~G~~D~V~~gR~~ladP~---l~~k~~~ 337 (367)
.+..+.++| ++++..|.+.+.-+| .++.+++
T Consensus 182 ti~~~a~AG-AN~iVaGsavf~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 182 TIDKAAEAG-ANMIVAGSAVFGAADPSDVISLLRN 215 (224)
T ss_pred hHHHHHHcC-CCEEEecceeecCCCHHHHHHHHHH
Confidence 999999999 999999999886554 4444444
No 375
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.03 E-value=0.85 Score=43.48 Aligned_cols=141 Identities=12% Similarity=0.033 Sum_probs=76.1
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCccc-cc--CCCCCCCchhhHhHH----HHHHHHHHHHHhC--CcceEEEeC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQV-ND--RTDEYGGSLENRCRF----ALEVVEAVVREIG--AERVGMRLS 233 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~-N~--R~D~yGgs~enr~r~----~~eii~aiR~~vg--~~~i~vrls 233 (367)
+.++.+.++||.+|++..-. ..|.. |. |--+....+.|+.-+ +.+.++.++.... +.++.+-+.
T Consensus 27 ~~~~~~~~~g~g~v~~kti~-------~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~si~ 99 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTT-------LEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIANVA 99 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCC-------CCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEEec
Confidence 34445567999999986532 11221 22 111222334443211 1234444444332 236776554
Q ss_pred CCccccccCCCChHHHHHHHHHHhhhcC-ccEEEEecCCccccC------Cch-hhHHHHHHHHHhcCCcEEEeCC--C-
Q 017733 234 PYAECAEAVDSNPEALGLYMAKALNKFK-LLYLHVIEPRMIQLT------DKS-ETQRSLLSMRRAFEGTFIAAGG--Y- 302 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G-vd~i~v~~~~~~~~~------~~~-~~~~~~~~ir~~~~~pvi~~Gg--i- 302 (367)
. .+.+++.+.++.++++| +|+|++......... ..+ ...+.++.+|+.++.||.+=-. +
T Consensus 100 g----------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~ 169 (301)
T PRK07259 100 G----------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT 169 (301)
T ss_pred c----------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch
Confidence 3 24678889999999999 999988432111111 111 1235677889888888776433 3
Q ss_pred CH-HHHHHHHHcCCCcEEcc
Q 017733 303 SR-DEGNKAVAANYTDLVAF 321 (367)
Q Consensus 303 t~-~~a~~~L~~G~~D~V~~ 321 (367)
+. +.++.+.+.| +|.|.+
T Consensus 170 ~~~~~a~~l~~~G-~d~i~~ 188 (301)
T PRK07259 170 DIVEIAKAAEEAG-ADGLSL 188 (301)
T ss_pred hHHHHHHHHHHcC-CCEEEE
Confidence 22 3345555566 898754
No 376
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.02 E-value=1.2 Score=46.60 Aligned_cols=119 Identities=16% Similarity=0.103 Sum_probs=79.1
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCccccccC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECAEAV 242 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~~~~ 242 (367)
.+++.+.|.|-+.|--++ |..+-+..-++++|+.-..- .|++-.|+
T Consensus 102 v~~a~~~Gidv~Rifd~l------------------------nd~~n~~~~i~~~k~~G~~~~~~i~yt~sp-------- 149 (596)
T PRK14042 102 VKLAVNNGVDVFRVFDAL------------------------NDARNLKVAIDAIKSHKKHAQGAICYTTSP-------- 149 (596)
T ss_pred HHHHHHcCCCEEEEcccC------------------------cchHHHHHHHHHHHHcCCEEEEEEEecCCC--------
Confidence 445678999999986544 34566777888888864322 24454454
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC----CCCHHHHHHHHHcCCCcE
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG----GYSRDEGNKAVAANYTDL 318 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~L~~G~~D~ 318 (367)
--+.+...++++.+.+.|+|.|.+.... ............+.+|+.+++||-.=. |+.......+++.| ||.
T Consensus 150 -~~t~e~~~~~ak~l~~~Gad~I~IkDta--G~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG-ad~ 225 (596)
T PRK14042 150 -VHTLDNFLELGKKLAEMGCDSIAIKDMA--GLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG-CNH 225 (596)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEEeCCcc--cCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC-CCE
Confidence 2357888999999999999999875321 111122234567889998887754322 22356678889999 786
Q ss_pred E
Q 017733 319 V 319 (367)
Q Consensus 319 V 319 (367)
|
T Consensus 226 i 226 (596)
T PRK14042 226 I 226 (596)
T ss_pred E
Confidence 6
No 377
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.01 E-value=1.1 Score=45.66 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-c--eEEEe
Q 017733 156 KIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-R--VGMRL 232 (367)
Q Consensus 156 ~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~--i~vrl 232 (367)
.+++.|++. |.++|.|.|.|-.+. |. .+-+.+.++.+|+. |.. . +.+-+
T Consensus 95 Dvv~~fv~~---A~~~Gvd~irif~~l------------nd------------~~n~~~~i~~ak~~-G~~v~~~i~~t~ 146 (467)
T PRK14041 95 DVVELFVKK---VAEYGLDIIRIFDAL------------ND------------IRNLEKSIEVAKKH-GAHVQGAISYTV 146 (467)
T ss_pred hhhHHHHHH---HHHCCcCEEEEEEeC------------CH------------HHHHHHHHHHHHHC-CCEEEEEEEecc
Confidence 344555554 457899999986543 11 23355566666654 322 1 22212
Q ss_pred CCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC----CCCHHHHH
Q 017733 233 SPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG----GYSRDEGN 308 (367)
Q Consensus 233 s~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~ 308 (367)
++ ..+.+...++++.+.+.|+|.|.+....- ..........++.+|+.+++||-.=. |+....+.
T Consensus 147 ~p---------~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G--~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~l 215 (467)
T PRK14041 147 SP---------VHTLEYYLEFARELVDMGVDSICIKDMAG--LLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYL 215 (467)
T ss_pred CC---------CCCHHHHHHHHHHHHHcCCCEEEECCccC--CcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHH
Confidence 22 23577888999999999999998753211 11122234567889999887754322 22467788
Q ss_pred HHHHcCCCcEEc-----ccHHHHhCCch
Q 017733 309 KAVAANYTDLVA-----FGRLFLANPDL 331 (367)
Q Consensus 309 ~~L~~G~~D~V~-----~gR~~ladP~l 331 (367)
.+++.| +|.|- +|.+. .||.+
T Consensus 216 aAieaG-ad~vD~sv~~~g~ga-gN~at 241 (467)
T PRK14041 216 AAVEAG-ADMFDTAISPFSMGT-SQPPF 241 (467)
T ss_pred HHHHhC-CCEEEeeccccCCCC-CChhH
Confidence 999999 77663 55543 36643
No 378
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.99 E-value=2.1 Score=40.68 Aligned_cols=123 Identities=13% Similarity=0.103 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhC-CCEEEEecccchHHHhhcCcccccCCCCC-CCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCc
Q 017733 160 DFRLAARNAIEAG-FDGVEIHGANGYLIDQFMKDQVNDRTDEY-GGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYA 236 (367)
Q Consensus 160 ~f~~aA~~a~~aG-fdgVei~~~~gyLl~qFlsp~~N~R~D~y-Ggs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~ 236 (367)
.+.+-.+...++| .|||-+.+.-| |+ --+.+.|.+++..+++. ++.. +|.+=++.
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstG----------------E~~~Lt~eEr~~~~~~~~~~----~~~~~pvi~gv~~-- 79 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTG----------------ENFMLSTEEKKEIFRIAKDE----AKDQIALIAQVGS-- 79 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCccc----------------ccccCCHHHHHHHHHHHHHH----hCCCCcEEEecCC--
Confidence 4455555667899 99999876543 32 23667777665555544 4333 55543332
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEe------C-CCCHHHHH
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAA------G-GYSRDEGN 308 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~------G-git~~~a~ 308 (367)
.+.++++++++..++.|+|.+-+..+.+..+. ......+.+.|.++. +.||+.- | .++++...
T Consensus 80 --------~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~-~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~ 150 (290)
T TIGR00683 80 --------VNLKEAVELGKYATELGYDCLSAVTPFYYKFS-FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFG 150 (290)
T ss_pred --------CCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC-HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHH
Confidence 24677899999999999999988766554322 233445566676666 5786632 2 23788888
Q ss_pred HHHHc
Q 017733 309 KAVAA 313 (367)
Q Consensus 309 ~~L~~ 313 (367)
++.+.
T Consensus 151 ~L~~~ 155 (290)
T TIGR00683 151 ELYKN 155 (290)
T ss_pred HHhcC
Confidence 87754
No 379
>PRK06852 aldolase; Validated
Probab=93.98 E-value=3.8 Score=39.25 Aligned_cols=151 Identities=19% Similarity=0.042 Sum_probs=86.4
Q ss_pred HHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017733 84 KEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRL 163 (367)
Q Consensus 84 ~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~ 163 (367)
.+.+..+.++++.+|++|-++++=..--|..- . + ...| +-.+.
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i-----------------~-----~---~~~~------------~~ia~ 192 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV-----------------K-----D---EKDP------------HLIAG 192 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCccc-----------------C-----C---CccH------------HHHHH
Confidence 46788999999999999988776332111110 0 0 0112 46788
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
+|+.+.+.|.|.|++... +++-+|+ .+-++.+-+.+|+-+|.+.=.+
T Consensus 193 aaRiaaELGADIVKv~y~----------------~~~~~g~--------~e~f~~vv~~~g~vpVviaGG~--------- 239 (304)
T PRK06852 193 AAGVAACLGADFVKVNYP----------------KKEGANP--------AELFKEAVLAAGRTKVVCAGGS--------- 239 (304)
T ss_pred HHHHHHHHcCCEEEecCC----------------CcCCCCC--------HHHHHHHHHhCCCCcEEEeCCC---------
Confidence 999999999999997642 1222233 2333334445665566663333
Q ss_pred CChHHHHHHHHHHhhh-cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Q 017733 244 SNPEALGLYMAKALNK-FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVA 312 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~-~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~ 312 (367)
..+.+++.+.++...+ .|..-+.+ .++.++... +.-...++.|+..+ -++.++++|.++++
T Consensus 240 k~~~~e~L~~v~~ai~~aGa~Gv~~-GRNIfQ~~~-p~~~~~~~Ai~~IV------H~~~s~~eA~~~~~ 301 (304)
T PRK06852 240 STDPEEFLKQLYEQIHISGASGNAT-GRNIHQKPL-DEAVRMCNAIYAIT------VEDKSVEEALKIYN 301 (304)
T ss_pred CCCHHHHHHHHHHHHHHcCCceeee-chhhhcCCC-chHHHHHHHHHHHH------hCCCCHHHHHHHhc
Confidence 1134556677776545 77766654 454443221 11123455555543 45668888877664
No 380
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.97 E-value=0.68 Score=43.42 Aligned_cols=45 Identities=20% Similarity=0.033 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCC
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGG 301 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg 301 (367)
.+++++-++.++++|+|.|-+- . .+ ...++.|.+.+++|+|+.|.
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE-~--------v~-~~~~~~i~~~l~iP~igiGa 204 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLE-C--------VP-AELAKEITEALSIPTIGIGA 204 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEc-C--------CC-HHHHHHHHHhCCCCEEEecc
Confidence 4567778888999999988752 1 11 25788899999999998763
No 381
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.93 E-value=0.84 Score=41.75 Aligned_cols=137 Identities=15% Similarity=0.053 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
...+.+.++++|.|.|.+.....-+ .+...++-+.+.-...+.++++.+|+.-. .+.++..+.
T Consensus 69 i~~~~~~~~~~g~~~i~i~~~~s~~----------~~~~~~~~~~~~~~~~~~~~v~~ak~~g~----~v~~~~~~~--- 131 (237)
T PF00682_consen 69 IERAVEAAKEAGIDIIRIFISVSDL----------HIRKNLNKSREEALERIEEAVKYAKELGY----EVAFGCEDA--- 131 (237)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETSHH----------HHHHHTCSHHHHHHHHHHHHHHHHHHTTS----EEEEEETTT---
T ss_pred HHHHHHhhHhccCCEEEecCcccHH----------HHHHhhcCCHHHHHHHHHHHHHHHHhcCC----ceEeCcccc---
Confidence 3444566788999999987755321 12233455555556666667777766432 334444211
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCC---C--CHHHHHHHHHcCC
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGG---Y--SRDEGNKAVAANY 315 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg---i--t~~~a~~~L~~G~ 315 (367)
...+.++..++++.+.++|+|.|.+.... + ...+....+.++.+++.++...+.... + -...+..+++.|
T Consensus 132 --~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~-G-~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aG- 206 (237)
T PF00682_consen 132 --SRTDPEELLELAEALAEAGADIIYLADTV-G-IMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAG- 206 (237)
T ss_dssp --GGSSHHHHHHHHHHHHHHT-SEEEEEETT-S--S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-
T ss_pred --ccccHHHHHHHHHHHHHcCCeEEEeeCcc-C-CcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcC-
Confidence 12246788899999999999998875331 1 011122346788899998833333332 2 367788999999
Q ss_pred CcEE
Q 017733 316 TDLV 319 (367)
Q Consensus 316 ~D~V 319 (367)
+|.|
T Consensus 207 a~~i 210 (237)
T PF00682_consen 207 ADRI 210 (237)
T ss_dssp -SEE
T ss_pred CCEE
Confidence 8877
No 382
>TIGR03586 PseI pseudaminic acid synthase.
Probab=93.92 E-value=1.4 Score=42.76 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=75.4
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCccccc----CCCCCCC-c---hhhHhHHHHHHHHHHHHHhCCcceEEEeCC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVND----RTDEYGG-S---LENRCRFALEVVEAVVREIGAERVGMRLSP 234 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~----R~D~yGg-s---~enr~r~~~eii~aiR~~vg~~~i~vrls~ 234 (367)
+-+..|+++|+|+|+.+. |-...+.++..++ +...|.+ + +-.+..+..|....+.+.+...-|.+=-++
T Consensus 21 ~lI~~A~~aGAdavKFQ~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~stp 97 (327)
T TIGR03586 21 AMIEAAKAAGADAIKLQT---YTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFSSP 97 (327)
T ss_pred HHHHHHHHhCCCEEEeee---ccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEEcc
Confidence 334455779999999886 6677777665433 2234543 2 233455666776667655532111111133
Q ss_pred CccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHH---HHHH
Q 017733 235 YAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDE---GNKA 310 (367)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~---a~~~ 310 (367)
++ .+ -++.|++.|++++-|..+... +..+++.+.+ ...||+.+-|. |.++ |.++
T Consensus 98 fd----------~~----svd~l~~~~v~~~KI~S~~~~-------n~~LL~~va~-~gkPvilstG~~t~~Ei~~Av~~ 155 (327)
T TIGR03586 98 FD----------ET----AVDFLESLDVPAYKIASFEIT-------DLPLIRYVAK-TGKPIIMSTGIATLEEIQEAVEA 155 (327)
T ss_pred CC----------HH----HHHHHHHcCCCEEEECCcccc-------CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHH
Confidence 21 11 234566788999888655332 4456666665 47899988887 6554 4555
Q ss_pred HHcCCC-cEEc
Q 017733 311 VAANYT-DLVA 320 (367)
Q Consensus 311 L~~G~~-D~V~ 320 (367)
+.+... +++.
T Consensus 156 i~~~g~~~i~L 166 (327)
T TIGR03586 156 CREAGCKDLVL 166 (327)
T ss_pred HHHCCCCcEEE
Confidence 553335 5555
No 383
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=93.92 E-value=0.87 Score=43.16 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
+.+.|+++|+..+...|.|-.. +.+++.+ ..++|+|.|-+...+. .......+.+++.
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~------------tleqa~e----a~~agaDiI~LDn~~~------e~l~~av~~~~~~ 233 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEAD------------TPKEAIA----ALRAQPDVLQLDKFSP------QQATEIAQIAPSL 233 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC------------CHHHHHH----HHHcCCCEEEECCCCH------HHHHHHHHHhhcc
Confidence 4568888888876545665442 3454443 3468999887743211 1111223333321
Q ss_pred -cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 292 -FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 292 -~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
-+..+-++||+|++.+.++.+.| +|++++|-...+
T Consensus 234 ~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~gal~~a 269 (284)
T PRK06096 234 APHCTLSLAGGINLNTLKNYADCG-IRLFITSAPYYA 269 (284)
T ss_pred CCCeEEEEECCCCHHHHHHHHhcC-CCEEEECccccC
Confidence 23468899999999999999999 999999876555
No 384
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.92 E-value=0.33 Score=44.33 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh----cCCcEEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA----FEGTFIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~----~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
+.+++..+++.|.+.|+..++++-.+. .....++.+++. .+.-+++.|-+ |+++++++++.| ++|+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aG-A~FiV 96 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGD-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLG-ANFIV 96 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcC-CCEEE
Confidence 467899999999999999999975421 123445555433 33347778887 999999999999 89887
Q ss_pred ccHHHHhCCchHHHHHhC
Q 017733 321 FGRLFLANPDLPKRFELN 338 (367)
Q Consensus 321 ~gR~~ladP~l~~k~~~g 338 (367)
. | -.||++.+..++-
T Consensus 97 s--P-~~~~~v~~~~~~~ 111 (222)
T PRK07114 97 T--P-LFNPDIAKVCNRR 111 (222)
T ss_pred C--C-CCCHHHHHHHHHc
Confidence 6 3 3778888877654
No 385
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.89 E-value=1 Score=44.34 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcc-eEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAER-VGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~-i~vrls~~~~ 237 (367)
+.+++.+....+.|.|+|......| .|.+ -+++.|.+.+.+.++++.+++|... +..=++.
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~g---e~~~------------~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~--- 207 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELLA---DQPY------------APFEERVRACMEAVRRANEETGRKTLYAPNITG--- 207 (367)
T ss_pred HHHHHHHHHHHhcCCCeeecccccc---Cccc------------CCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC---
Confidence 4667777777889999998654332 2222 2568899999999999999998753 3332222
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCC
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPR 271 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~ 271 (367)
+.+++++.++..+++|+|.+-+..+.
T Consensus 208 --------~~~e~i~~a~~a~~~Gad~vmv~~~~ 233 (367)
T cd08205 208 --------DPDELRRRADRAVEAGANALLINPNL 233 (367)
T ss_pred --------CHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 24778899999999999998776443
No 386
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=93.89 E-value=2.7 Score=38.17 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
+....+..+...|.|.||+...+ +.. .-...+.+.+..+|+.+ ..|+.+-++...+.
T Consensus 11 ~~~~~~~~~~~~~~D~vElRlD~------------------l~~---~~~~~~~~~l~~lr~~~-~~piI~T~R~~~eG- 67 (224)
T PF01487_consen 11 ELLAELEEAESSGADAVELRLDY------------------LEN---DSAEDISEQLAELRRSL-DLPIIFTVRTKEEG- 67 (224)
T ss_dssp HHHHHHHHHHHTTTSEEEEEGGG------------------STT---TSHHHHHHHHHHHHHHC-TSEEEEE--BGGGT-
T ss_pred HHHHHHHHHHhcCCCEEEEEecc------------------ccc---cChHHHHHHHHHHHHhC-CCCEEEEecccccC-
Confidence 44455555565699999986644 222 12346788999999998 44555444432111
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC-CC--CHH------HHHHH
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG-GY--SRD------EGNKA 310 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G-gi--t~~------~a~~~ 310 (367)
.....+.++..++.+.+.+.|+|||+|..... +.... .......-...||++- .+ ||. ..+++
T Consensus 68 -G~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~------~~~~~-~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~ 139 (224)
T PF01487_consen 68 -GRFQGSEEEYLELLERAIRLGPDYIDIELDLF------PDDLK-SRLAARKGGTKIILSYHDFEKTPSWEELIELLEEM 139 (224)
T ss_dssp -SSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCC------HHHHH-HHHHHHHTTSEEEEEEEESS---THHHHHHHHHHH
T ss_pred -CCCcCCHHHHHHHHHHHHHcCCCEEEEEcccc------hhHHH-HHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHH
Confidence 11133567788899999999999999842211 11111 1223333455666663 34 332 23455
Q ss_pred HHcCCCcEEcccHH
Q 017733 311 VAANYTDLVAFGRL 324 (367)
Q Consensus 311 L~~G~~D~V~~gR~ 324 (367)
.+.| +|+|=++..
T Consensus 140 ~~~g-adivKia~~ 152 (224)
T PF01487_consen 140 QELG-ADIVKIAVM 152 (224)
T ss_dssp HHTT--SEEEEEEE
T ss_pred HhcC-CCeEEEEec
Confidence 5556 887766544
No 387
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=93.86 E-value=0.014 Score=57.14 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=61.1
Q ss_pred CccCCCccccC-CeeeCCceeeCcCCCC-------cc-CCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCC
Q 017733 10 NIPLLTAYKMG-QFNLSHRMVLAPLTRI-------RS-YNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTP 79 (367)
Q Consensus 10 ~~~Lf~Pl~ig-~~~lkNRiv~apm~~~-------~~-~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~ 79 (367)
+..|=..+++. +-..+||++.+++++. ++ ..|.||+.+++.|..+.- +.|+|+|+++.|+|......++.
T Consensus 15 ~g~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~~~~~~~~~ 94 (400)
T KOG0134|consen 15 MGNLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQNEEWAGNV 94 (400)
T ss_pred cccccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeecccccccCCce
Confidence 44566677776 5888999998887432 33 469999999999999997 78999999999999999888776
Q ss_pred cCCCHH
Q 017733 80 GIWTKE 85 (367)
Q Consensus 80 ~~~~~~ 85 (367)
.++.+.
T Consensus 95 ~~~~e~ 100 (400)
T KOG0134|consen 95 IAFHEN 100 (400)
T ss_pred EEEecC
Confidence 666653
No 388
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.84 E-value=0.42 Score=43.13 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc-EEEeCCC-CHHHHHHHHHcCCCcEEcccH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT-FIAAGGY-SRDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggi-t~~~a~~~L~~G~~D~V~~gR 323 (367)
+.+++..+++.+.+.|+..++++..+ +...+.++.+++.++.+ +++.|.+ +.++++.+++.| +||+...-
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG-A~fivsp~ 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAG-GRLIVTPN 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC-CCEEECCC
Confidence 46778899999999999999986432 12334678888888754 7777887 899999999999 99999853
Q ss_pred HHHhCCchHHHHHhC
Q 017733 324 LFLANPDLPKRFELN 338 (367)
Q Consensus 324 ~~ladP~l~~k~~~g 338 (367)
.|+++.+..+..
T Consensus 92 ---~~~~v~~~~~~~ 103 (206)
T PRK09140 92 ---TDPEVIRRAVAL 103 (206)
T ss_pred ---CCHHHHHHHHHC
Confidence 566776666543
No 389
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.81 E-value=1.4 Score=40.74 Aligned_cols=154 Identities=17% Similarity=0.126 Sum_probs=82.1
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+-.|+.+.++||++|-+.+.. ++--+ -..|.---+++ -.++.++.|...+. -||.+.+-.
T Consensus 19 ~~SAr~~e~~Gf~ai~~sg~~---~a~s~-----G~pD~~~lt~~----e~~~~~~~I~~~~~-iPv~vD~d~------- 78 (238)
T PF13714_consen 19 ALSARLAERAGFDAIATSGAG---VAASL-----GYPDGGLLTLT----EMLAAVRRIARAVS-IPVIVDADT------- 78 (238)
T ss_dssp HHHHHHHHHTT-SEEEEHHHH---HHHHT-----TS-SSS-S-HH----HHHHHHHHHHHHSS-SEEEEE-TT-------
T ss_pred HHHHHHHHHcCCCEEEechHH---HHHHc-----CCCCCCCCCHH----HHHHHHHHHHhhhc-CcEEEEccc-------
Confidence 567889999999999865322 22111 22332111222 23466666666662 488886643
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccC-CchhhHHHHHHHHHh---cCC-cEEEeCCC---C---------H
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT-DKSETQRSLLSMRRA---FEG-TFIAAGGY---S---------R 304 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~-~~~~~~~~~~~ir~~---~~~-pvi~~Ggi---t---------~ 304 (367)
+.+++.....+.++.++++|+.-|++-...+.... .-.+...+..+||.. .+. .++.+.+- . .
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 22444667888999999999999999766322111 111223344444433 222 23333332 1 2
Q ss_pred HHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhC
Q 017733 305 DEGNKAVAANYTDLVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 305 ~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g 338 (367)
+-++.+.+.| +|+|.+ +.+.+.+-++++.+.
T Consensus 159 ~R~~aY~eAG-AD~ifi--~~~~~~~~i~~~~~~ 189 (238)
T PF13714_consen 159 ERAKAYAEAG-ADMIFI--PGLQSEEEIERIVKA 189 (238)
T ss_dssp HHHHHHHHTT--SEEEE--TTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCEEEe--CCCCCHHHHHHHHHh
Confidence 3467788888 999987 444555555555443
No 390
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.80 E-value=2.7 Score=39.42 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=78.3
Q ss_pred CHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017733 83 TKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFR 162 (367)
Q Consensus 83 ~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~ 162 (367)
.++.++..++.++.+++.|..+.+++.+.++ ..+ +.+.
T Consensus 109 ~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------------------------------~~~------------~~~~ 146 (268)
T cd07940 109 REEVLERAVEAVEYAKSHGLDVEFSAEDATR------------------------------TDL------------DFLI 146 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEeeecCCC------------------------------CCH------------HHHH
Confidence 3456888999999999999777655533222 011 4567
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC--cceEEEeCCCccccc
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA--ERVGMRLSPYAECAE 240 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~--~~i~vrls~~~~~~~ 240 (367)
+.++.+.++|.|.|-|- |..|... +.-+.++++++|+..++ .+|++ ....++
T Consensus 147 ~~~~~~~~~G~~~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~~~~i~l~~--H~Hn~~-- 200 (268)
T cd07940 147 EVVEAAIEAGATTINIP-------------------DTVGYLT---PEEFGELIKKLKENVPNIKVPISV--HCHNDL-- 200 (268)
T ss_pred HHHHHHHHcCCCEEEEC-------------------CCCCCCC---HHHHHHHHHHHHHhCCCCceeEEE--EecCCc--
Confidence 88888888999988763 4445432 44568899999999874 24554 332211
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHH
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSM 288 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i 288 (367)
+ ...+..++ ..++|+++|+.+-.......+..+....+..+
T Consensus 201 ---G--lA~An~la--Ai~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L 241 (268)
T cd07940 201 ---G--LAVANSLA--AVEAGARQVECTINGIGERAGNAALEEVVMAL 241 (268)
T ss_pred ---c--hHHHHHHH--HHHhCCCEEEEEeeccccccccccHHHHHHHH
Confidence 1 12121121 23579999998766554333333333333333
No 391
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.79 E-value=0.18 Score=51.84 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=48.7
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
..+-++.|.++|+|.|.+....- -....++.++.||+.++...+..|++ |.++|+.+++.| +|+|.+
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g----~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG-aD~i~v 316 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQG----DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG-VDGLRV 316 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC----CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC-cCEEEE
Confidence 45677888899999998754311 11223467899999986444444566 999999999999 999944
No 392
>PLN02417 dihydrodipicolinate synthase
Probab=93.79 E-value=2.1 Score=40.46 Aligned_cols=122 Identities=13% Similarity=0.063 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAEC 238 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~ 238 (367)
.+.+-++...+.|.+||-+.+.-| +|. --|.+.|.+++..+++. +... +|.+=++.
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~GstG----E~~-----------~ls~~Er~~~~~~~~~~----~~~~~pvi~gv~~---- 79 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTTG----EGQ-----------LMSWDEHIMLIGHTVNC----FGGKIKVIGNTGS---- 79 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccCc----chh-----------hCCHHHHHHHHHHHHHH----hCCCCcEEEECCC----
Confidence 345555556779999999877554 221 12456676655554444 4333 45543332
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe------C-CCCHHHHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA------G-GYSRDEGNKAV 311 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~------G-git~~~a~~~L 311 (367)
.+.+++.++++..+++|+|.+-+..+.+..+ +......+.+.|.+.. ||+.- | .++++..+++.
T Consensus 80 ------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~-~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 80 ------NSTREAIHATEQGFAVGMHAALHINPYYGKT-SQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIA 150 (280)
T ss_pred ------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCC-CHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHh
Confidence 3467789999999999999998877755432 2223344556676654 86532 3 24788887776
Q ss_pred Hc
Q 017733 312 AA 313 (367)
Q Consensus 312 ~~ 313 (367)
+.
T Consensus 151 ~~ 152 (280)
T PLN02417 151 QH 152 (280)
T ss_pred cC
Confidence 43
No 393
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.79 E-value=0.92 Score=43.09 Aligned_cols=91 Identities=11% Similarity=-0.021 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhh-HHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSET-QRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~-~~~~~~ir~ 290 (367)
+.+.++++|+..+..+|.|-.. +.+++.+. .+.|+|.|-+..-+ +.. ....+.+++
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~------------tl~ea~ea----l~~gaDiI~LDnm~-------~e~vk~av~~~~~ 242 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVD------------SLEQLDEV----LAEGAELVLLDNFP-------VWQTQEAVQRRDA 242 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcC------------CHHHHHHH----HHcCCCEEEeCCCC-------HHHHHHHHHHHhc
Confidence 3567788888776545555432 24444333 36899988775321 111 223333333
Q ss_pred hc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 291 AF-EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 291 ~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.. ++.+.++||+|++...++.+.| +|++++|....
T Consensus 243 ~~~~v~ieaSGGI~~~ni~~yA~tG-vD~Is~galt~ 278 (289)
T PRK07896 243 RAPTVLLESSGGLTLDTAAAYAETG-VDYLAVGALTH 278 (289)
T ss_pred cCCCEEEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 32 3468899999999999999999 99999998776
No 394
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.78 E-value=1.8 Score=40.76 Aligned_cols=139 Identities=13% Similarity=-0.001 Sum_probs=82.9
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcce--EEEeCCCccccc
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERV--GMRLSPYAECAE 240 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i--~vrls~~~~~~~ 240 (367)
+..++|.++|.|.|.+-...- + .++..+++-+.++-...+.+.++..|+.-....+ ..-++.. +
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~S--------d--~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~--~-- 142 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSAS--------E--TFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP--Y-- 142 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecC--------H--HHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC--C--
Confidence 356778889999988765431 1 1233445555566666667777777766321112 2222221 1
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-----CHHHHHHHHHcC
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-----SRDEGNKAVAAN 314 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-----t~~~a~~~L~~G 314 (367)
.+..+.+...++++.+.+.|+|.|.+....- ...+......++.+++.++ +|+-. ... ....+..+++.|
T Consensus 143 -~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G--~~~P~~v~~lv~~l~~~~~~~~i~~-H~Hnd~GlA~AN~laA~~aG 218 (274)
T cd07938 143 -EGEVPPERVAEVAERLLDLGCDEISLGDTIG--VATPAQVRRLLEAVLERFPDEKLAL-HFHDTRGQALANILAALEAG 218 (274)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCEEEECCCCC--ccCHHHHHHHHHHHHHHCCCCeEEE-EECCCCChHHHHHHHHHHhC
Confidence 1123577888999999999999988753311 1112224456788888875 45333 322 366778999999
Q ss_pred CCcEEc
Q 017733 315 YTDLVA 320 (367)
Q Consensus 315 ~~D~V~ 320 (367)
+|.|-
T Consensus 219 -a~~id 223 (274)
T cd07938 219 -VRRFD 223 (274)
T ss_pred -CCEEE
Confidence 67653
No 395
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=93.77 E-value=1.5 Score=42.46 Aligned_cols=147 Identities=13% Similarity=0.116 Sum_probs=86.8
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHH-hCCcceEEE-e--CCCcc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVRE-IGAERVGMR-L--SPYAE 237 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~-vg~~~i~vr-l--s~~~~ 237 (367)
.+-|+...++|+++|=+. +-.+-|+||+ +-+++||++ +. -||.-| + .++.-
T Consensus 142 ~~iA~~Ye~~GA~aISVL----------------Td~~~F~Gs~--------e~L~~vr~~~v~-lPvLrKDFIID~yQI 196 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVL----------------TDEKYFQGSF--------ENLEAIRNAGVK-CPLLCKEFIVDAWQI 196 (338)
T ss_pred HHHHHHHHhCCCcEEEEe----------------cCcCcCCCCH--------HHHHHHHHcCCC-CCEeeccccCCHHHH
Confidence 566666778999999864 3345689994 456788887 53 243321 1 11100
Q ss_pred ccc-cCC---------CChHHHHHHHHHHhhhcCccE-EEEecC--------------------CccccCCchhhHHHHH
Q 017733 238 CAE-AVD---------SNPEALGLYMAKALNKFKLLY-LHVIEP--------------------RMIQLTDKSETQRSLL 286 (367)
Q Consensus 238 ~~~-~~~---------~~~~~~~~~l~~~L~~~Gvd~-i~v~~~--------------------~~~~~~~~~~~~~~~~ 286 (367)
+.. ..+ -.+.++..++.+...+.|++- ++||.. +.... .-+.....
T Consensus 197 ~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf---~vDl~~t~ 273 (338)
T PLN02460 197 YYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETF---EVDISNTK 273 (338)
T ss_pred HHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcc---eECHHHHH
Confidence 000 000 012234455666666677664 465532 11110 01223344
Q ss_pred HHHH-----hc---CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 287 SMRR-----AF---EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 287 ~ir~-----~~---~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
.+.+ .+ +..+++-+|+ |+++...+...| +|.|.+|-.++..||.-..+++
T Consensus 274 ~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G-adAvLVGEsLMr~~dp~~~l~~ 332 (338)
T PLN02460 274 KLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG-VKAVLVGESLVKQDDPGKGIAG 332 (338)
T ss_pred HHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHHH
Confidence 4554 23 1235666788 999999999999 9999999999999998776654
No 396
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.75 E-value=0.22 Score=51.07 Aligned_cols=68 Identities=18% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc-EEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 249 LGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT-FIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 249 ~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
++.+.++.|.++|+|+|.+.... .-.......++.+|+.++.+ .+..|.+ |+++++.+++.| +|+|-+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~----g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG-Ad~I~v 311 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSE----GYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG-ADFVKV 311 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcc----cccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC-CCEEEE
Confidence 45678888999999999875211 11112356788999998753 5666777 999999999999 899744
No 397
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=93.74 E-value=1.9 Score=41.93 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=73.0
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAAR 166 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~ 166 (367)
.+..++.++.+++.|..+.+++..+++. .+ +.+++.++
T Consensus 114 ~~~~~~~i~~ak~~G~~v~~~l~~a~~~------------------------------~~------------e~l~~~a~ 151 (337)
T PRK08195 114 ADVSEQHIGLARELGMDTVGFLMMSHMA------------------------------PP------------EKLAEQAK 151 (337)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCC------------------------------CH------------HHHHHHHH
Confidence 3457888999999998888888654221 11 56788889
Q ss_pred HHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCC
Q 017733 167 NAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 167 ~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~ 245 (367)
.+.++|.|.|-|- |.+|... +.-+.++++++|+.++++ +|++ ...+++ +
T Consensus 152 ~~~~~Ga~~i~i~-------------------DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~--H~Hnnl-----G- 201 (337)
T PRK08195 152 LMESYGAQCVYVV-------------------DSAGALL---PEDVRDRVRALRAALKPDTQVGF--HGHNNL-----G- 201 (337)
T ss_pred HHHhCCCCEEEeC-------------------CCCCCCC---HHHHHHHHHHHHHhcCCCCeEEE--EeCCCc-----c-
Confidence 9999999998863 4555432 445789999999999754 5665 433222 1
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCcc
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMI 273 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~ 273 (367)
...+..++ ..++|+++|+.+-..+.
T Consensus 202 -la~ANsla--Ai~aGa~~iD~Sl~GlG 226 (337)
T PRK08195 202 -LGVANSLA--AVEAGATRIDGSLAGLG 226 (337)
T ss_pred -hHHHHHHH--HHHhCCCEEEecChhhc
Confidence 22122222 23589999988754443
No 398
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.72 E-value=0.59 Score=44.41 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=67.8
Q ss_pred cccCCCCCCCc--hhhHhHH---HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEe
Q 017733 194 VNDRTDEYGGS--LENRCRF---ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVI 268 (367)
Q Consensus 194 ~N~R~D~yGgs--~enr~r~---~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~ 268 (367)
.|+|-+-+-+- ..|=.++ +.+.++++|+..++..|.|... +.+++.+ ..++|+|.|-+.
T Consensus 169 ~nHR~gLsD~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEve------------tleea~e----A~~aGaDiImLD 232 (294)
T PRK06978 169 ENQRLALYDGILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVE------------TLAQLET----ALAHGAQSVLLD 232 (294)
T ss_pred cCcCCCCCceEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcC------------CHHHHHH----HHHcCCCEEEEC
Confidence 56666555443 2343333 3467777777655334444332 3454433 346899988765
Q ss_pred cCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 269 EPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
.-+. .......+.++. ++.+-++||+|++...++.+.| +|+|++|.....-|.
T Consensus 233 nmsp------e~l~~av~~~~~--~~~lEaSGGIt~~ni~~yA~tG-VD~IS~galthsa~~ 285 (294)
T PRK06978 233 NFTL------DMMREAVRVTAG--RAVLEVSGGVNFDTVRAFAETG-VDRISIGALTKDVRA 285 (294)
T ss_pred CCCH------HHHHHHHHhhcC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCcc
Confidence 3311 111122232322 3568899999999999999999 999999987665553
No 399
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.65 E-value=0.6 Score=44.42 Aligned_cols=93 Identities=9% Similarity=-0.034 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
+.+.|+++|+..+..+|.|-.. +.+++.+. .++|+|.|-+...+. .......+.++.
T Consensus 195 i~~av~~~r~~~~~~kIeVEv~------------sleea~ea----~~~gaDiI~LDn~s~------e~~~~av~~~~~- 251 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVEVE------------NLDELDQA----LKAGADIIMLDNFTT------EQMREAVKRTNG- 251 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEeC------------CHHHHHHH----HHcCCCEEEeCCCCh------HHHHHHHHhhcC-
Confidence 3567777787776545555332 24544433 357899887653311 111122332322
Q ss_pred cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 292 FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 292 ~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
++.+-++||++.+...++.+.| +|++++|...-.=|
T Consensus 252 -~~~ieaSGGI~~~ni~~yA~tG-VD~Is~galthsa~ 287 (296)
T PRK09016 252 -RALLEVSGNVTLETLREFAETG-VDFISVGALTKHVQ 287 (296)
T ss_pred -CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCC
Confidence 4568899999999999999999 99999998654433
No 400
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=93.64 E-value=1.1 Score=43.08 Aligned_cols=103 Identities=18% Similarity=0.120 Sum_probs=60.0
Q ss_pred HHHHHHHHHH-HHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceE--EEeCC
Q 017733 159 NDFRLAARNA-IEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVG--MRLSP 234 (367)
Q Consensus 159 ~~f~~aA~~a-~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~--vrls~ 234 (367)
++.++.|.++ +++|.++|.|-++. .+.++.||..+... ||+ +-|+|
T Consensus 113 e~av~nA~rl~~eaGa~aVKlEGg~------------------------------~~~~~~I~~l~~~GIPV~gHiGLtP 162 (332)
T PLN02424 113 DQAVESAVRMLKEGGMDAVKLEGGS------------------------------PSRVTAAKAIVEAGIAVMGHVGLTP 162 (332)
T ss_pred HHHHHHHHHHHHHhCCcEEEECCCc------------------------------HHHHHHHHHHHHcCCCEEEeecccc
Confidence 3445555555 78999999997542 23445555555222 443 22333
Q ss_pred Ccc--cccc--CCC--ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCC
Q 017733 235 YAE--CAEA--VDS--NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGG 301 (367)
Q Consensus 235 ~~~--~~~~--~~~--~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg 301 (367)
-.. +.+. .+. +..+..++-++.|+++|++.|-+- . .+. ..++.|.+.+++|+|+.|.
T Consensus 163 Qs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE-~--------Vp~-~la~~It~~l~IPtIGIGA 225 (332)
T PLN02424 163 QAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLE-C--------VPA-PVAAAITSALQIPTIGIGA 225 (332)
T ss_pred eeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEc-C--------CcH-HHHHHHHHhCCCCEEeecC
Confidence 211 1111 111 123345666888999999887652 1 112 3788999999999988763
No 401
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.55 E-value=1.8 Score=38.56 Aligned_cols=118 Identities=11% Similarity=0.033 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+.++.+ +.|++.||+-.. .+.++..++|+++|+..+...+.+.+...
T Consensus 15 ~~~~~~l-~~~v~~iev~~~-------------------------l~~~~g~~~i~~l~~~~~~~~i~~d~k~~------ 62 (206)
T TIGR03128 15 LELAEKV-ADYVDIIEIGTP-------------------------LIKNEGIEAVKEMKEAFPDRKVLADLKTM------ 62 (206)
T ss_pred HHHHHHc-ccCeeEEEeCCH-------------------------HHHHhCHHHHHHHHHHCCCCEEEEEEeec------
Confidence 4445555 688999997211 12345689999999987644444443221
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEe-CCC-C-HHHHHHHHHcCCCcE
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAA-GGY-S-RDEGNKAVAANYTDL 318 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~-Ggi-t-~~~a~~~L~~G~~D~ 318 (367)
++ +. ..++++.++|+|++.+|.-. +.......++.+++ .+++++.. -+. | .++++.+.+.| +|+
T Consensus 63 ---d~-~~--~~~~~~~~~Gad~i~vh~~~-----~~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g-~d~ 129 (206)
T TIGR03128 63 ---DA-GE--YEAEQAFAAGADIVTVLGVA-----DDATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELG-ADY 129 (206)
T ss_pred ---cc-hH--HHHHHHHHcCCCEEEEeccC-----CHHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcC-CCE
Confidence 01 11 24567778999999876331 11111234444554 46776653 233 4 57888888877 999
Q ss_pred EcccHH
Q 017733 319 VAFGRL 324 (367)
Q Consensus 319 V~~gR~ 324 (367)
|.+..+
T Consensus 130 v~~~pg 135 (206)
T TIGR03128 130 IGVHTG 135 (206)
T ss_pred EEEcCC
Confidence 988543
No 402
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.45 E-value=2 Score=40.83 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+-+|+.+.++||++|-+.+.. ++--+ --.|.---+++ -.++.++.|.+++. -||.+.+-.
T Consensus 23 a~SAri~e~aGf~Ai~~sg~~---~a~~l-----G~pD~g~lt~~----e~~~~~~~I~~~~~-iPviaD~d~------- 82 (285)
T TIGR02317 23 AMAALLAERAGFEAIYLSGAA---VAASL-----GLPDLGITTLD----EVAEDARRITRVTD-LPLLVDADT------- 82 (285)
T ss_pred HHHHHHHHHcCCCEEEEcHHH---HHHhC-----CCCCCCCCCHH----HHHHHHHHHHhccC-CCEEEECCC-------
Confidence 567888899999999975432 22211 12231001222 23445555555553 377775532
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCcc----ccCCc--hhhHHHHHHHH---HhcC-CcEEEeCCC---------
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMI----QLTDK--SETQRSLLSMR---RAFE-GTFIAAGGY--------- 302 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~----~~~~~--~~~~~~~~~ir---~~~~-~pvi~~Ggi--------- 302 (367)
+.++ .......++.++++|+.-||+-..... ...++ .+...++.+|+ ++.. .+++.+.+.
T Consensus 83 GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 161 (285)
T TIGR02317 83 GFGE-AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLD 161 (285)
T ss_pred CCCC-HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHH
Confidence 2233 556678899999999999999654321 11111 11223444443 3322 335554442
Q ss_pred -CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCC
Q 017733 303 -SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNA 339 (367)
Q Consensus 303 -t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~ 339 (367)
..+-++.+.+.| +|+|.+ +.+.+++.++++.+.-
T Consensus 162 eAI~Ra~ay~~AG-AD~vfi--~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 162 AAIERAKAYVEAG-ADMIFP--EALTSLEEFRQFAKAV 196 (285)
T ss_pred HHHHHHHHHHHcC-CCEEEe--CCCCCHHHHHHHHHhc
Confidence 123467788888 999998 4467788888887753
No 403
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.45 E-value=2.2 Score=44.78 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=80.9
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCccccccCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECAEAVD 243 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~~~~~ 243 (367)
+.+.++|.|.|.|..+. |. .+-+...++.+|+.-... .|.+-.++
T Consensus 104 ~~a~~~Gid~~rifd~l------------nd------------~~~~~~ai~~ak~~G~~~~~~i~yt~~p--------- 150 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAM------------ND------------PRNLETALKAVRKVGAHAQGTLSYTTSP--------- 150 (593)
T ss_pred HHHHhcCCCEEEEeeeC------------Cc------------HHHHHHHHHHHHHcCCeEEEEEEEeeCC---------
Confidence 34668999999986533 11 234667778887753322 24443444
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCC----CCHHHHHHHHHcCCCcEE
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGG----YSRDEGNKAVAANYTDLV 319 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg----it~~~a~~~L~~G~~D~V 319 (367)
..+.+...++++.+++.|+|.|.+....- ...........+.+|+.+++||-.=.- +.......++++| ||.|
T Consensus 151 ~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G--~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAG-a~~v 227 (593)
T PRK14040 151 VHTLQTWVDLAKQLEDMGVDSLCIKDMAG--LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAG-IDGV 227 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEECCCCC--CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcC-CCEE
Confidence 22467788999999999999998753311 111222345678899888877543221 2356778899999 7766
Q ss_pred -----cccHHHHhCCch
Q 017733 320 -----AFGRLFLANPDL 331 (367)
Q Consensus 320 -----~~gR~~ladP~l 331 (367)
+||++ ..||.+
T Consensus 228 D~ai~glG~~-~Gn~~l 243 (593)
T PRK14040 228 DTAISSMSMT-YGHSAT 243 (593)
T ss_pred Eecccccccc-ccchhH
Confidence 45554 366654
No 404
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=93.45 E-value=3.7 Score=42.63 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=127.8
Q ss_pred CccccCCeee--CCceeeCcCCCCccCCCCCCHHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhH
Q 017733 15 TAYKMGQFNL--SHRMVLAPLTRIRSYNHIPQPHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKP 92 (367)
Q Consensus 15 ~Pl~ig~~~l--kNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~ 92 (367)
..++||++.+ -|.|....|+...+.| ++..++=-.+.+. +|+=|+ -|. .-+.+..+.++.
T Consensus 12 r~V~vG~v~iGg~~PI~vQSMt~t~T~D---~~atv~Qi~~l~~-aGceiV---Rvt-----------v~~~~~a~~l~~ 73 (611)
T PRK02048 12 SVVNIGATPLGGPNPIRIQSMTNTSTMD---TEACVAQAKRIID-AGGEYV---RLT-----------TQGVREAENLMN 73 (611)
T ss_pred eEEEEcCEeECCCCceEEEecCCCCccc---HHHHHHHHHHHHH-cCCCEE---EEc-----------CCCHHHHHhHHH
Confidence 4578888776 6999999998764433 4555556666665 443222 111 123456788999
Q ss_pred HHHHHHHcCC--eeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCC--CCCCCCCChHH----HHHHHHHHHHH
Q 017733 93 IVDAVHQKGG--IIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLD--WSPPRPLSIEE----IPKIVNDFRLA 164 (367)
Q Consensus 93 l~~~vh~~g~--~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~--~~~~~~mt~~e----I~~ii~~f~~a 164 (367)
+.+...+.|. ++++-+...-+.+.... -.-..++..|+.-+-. ...-.+-|++| ++.|-+.|..-
T Consensus 74 I~~~l~~~G~~iPLVADIHF~~~~A~~a~-------~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~ 146 (611)
T PRK02048 74 INIGLRSQGYMVPLVADVHFNPKVADVAA-------QYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPF 146 (611)
T ss_pred HHHHHhhcCCCCCEEEecCCCcHHHHHHH-------HhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHH
Confidence 9999888874 56666533333221100 0011233333211100 01112334444 67788899999
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVD 243 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~ 243 (367)
++.|++.|. .|.|=.-||.|=..+++ +||.+.+.-..-++|-++-+++.-=.+ .+.+|-|-.
T Consensus 147 v~~ak~~~~-~iRIGvN~GSL~~~i~~--------~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~-------- 209 (611)
T PRK02048 147 LNICKENHT-AIRIGVNHGSLSDRIMS--------RYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNT-------- 209 (611)
T ss_pred HHHHHHCCC-CEEEecCCcCchHHHHH--------HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCc--------
Confidence 999999987 78888889988888885 477666655555555555554432122 467777642
Q ss_pred CChHHHHHHHHHHhhhcCccE-EEE
Q 017733 244 SNPEALGLYMAKALNKFKLLY-LHV 267 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~-i~v 267 (367)
...+.....++..+.+.|.+| +|+
T Consensus 210 ~~~V~AyRlLa~~l~~~g~dyPLHL 234 (611)
T PRK02048 210 VVMVRTVRLLVAVMEAEGMHYPLHL 234 (611)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEE
Confidence 345677788899998888887 454
No 405
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.40 E-value=0.61 Score=41.36 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRL 324 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~ 324 (367)
+.+++..+++.+.+.|++.+.+...+ +.....++.+++.++...++.|.+ +.++++.+++.| +|+|.++-
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~G-a~~i~~p~- 84 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAG-AQFIVSPG- 84 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEcCC-
Confidence 35778889999999999999986431 123457788888887556677777 899999999999 99997653
Q ss_pred HHhCCchHHHHHh
Q 017733 325 FLANPDLPKRFEL 337 (367)
Q Consensus 325 ~ladP~l~~k~~~ 337 (367)
.||++.+..+.
T Consensus 85 --~~~~~~~~~~~ 95 (190)
T cd00452 85 --LDPEVVKAANR 95 (190)
T ss_pred --CCHHHHHHHHH
Confidence 46777776665
No 406
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.39 E-value=0.43 Score=46.21 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-CHHHHHHHHHcCCCcEEcc
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~ 321 (367)
..+.++.+.++|+++|+++...- ......+.++.+|+..+ +||++ |.+ |++.|+++++.| +|+|.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G----~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aG-aD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG----HSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAG-ADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC----CcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcC-CCEEEE
Confidence 45677778889999998753311 11224567888888875 67776 555 999999999999 999876
No 407
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.29 E-value=1.1 Score=41.82 Aligned_cols=77 Identities=18% Similarity=0.080 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
.+++++-++.++++|+|.+-+- . .+ ...++.|.+.+++|+|+.|.=..-+..-++ - .|++++...
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE-~--------v~-~~~~~~i~~~v~iP~igiGaG~~~dgqvlv-~--~D~lG~~~~-- 221 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLE-C--------VP-AELAKEITEALSIPTIGIGAGPDCDGQVLV-W--HDMLGLSPG-- 221 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEc-C--------CC-HHHHHHHHHhCCCCEEEeccCCCCCceeeh-H--HhhcCCCCC--
Confidence 4567777888999999988752 1 11 257888999999999987631111111111 1 255555433
Q ss_pred hCCchHHHHHhC
Q 017733 327 ANPDLPKRFELN 338 (367)
Q Consensus 327 adP~l~~k~~~g 338 (367)
.-|-|+++..+.
T Consensus 222 ~~p~f~k~~~~~ 233 (254)
T cd06557 222 FKPKFVKRYADL 233 (254)
T ss_pred CCCCcHHHHhhh
Confidence 356676666554
No 408
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.22 E-value=1.5 Score=43.06 Aligned_cols=131 Identities=13% Similarity=0.034 Sum_probs=78.0
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~ 245 (367)
+++.++|.|.|.|..+. |+ .++..+++-+.+.-.+.+.+.++.+|+. | +.|.++..+ . ...
T Consensus 79 ~~a~~~g~~~i~i~~~~--------Sd--~~~~~~~~~s~~e~l~~~~~~i~~ak~~-g---~~v~~~~ed-~----~r~ 139 (365)
T TIGR02660 79 EAAARCGVDAVHISIPV--------SD--LQIEAKLRKDRAWVLERLARLVSFARDR-G---LFVSVGGED-A----SRA 139 (365)
T ss_pred HHHHcCCcCEEEEEEcc--------CH--HHHHHHhCcCHHHHHHHHHHHHHHHHhC-C---CEEEEeecC-C----CCC
Confidence 45678899998887643 11 1233344555454445555666655553 2 235566532 1 123
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-----CHHHHHHHHHcCCCcEE
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-----SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t~~~a~~~L~~G~~D~V 319 (367)
+.+...++++.+.++|+|.|.+..-. + ...+......++.+++.+++|| ..... ....+..+++.| +|.|
T Consensus 140 ~~~~l~~~~~~~~~~Ga~~i~l~DT~-G-~~~P~~v~~lv~~l~~~~~v~l-~~H~HNd~GlA~ANalaA~~aG-a~~v 214 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGADRFRFADTV-G-ILDPFSTYELVRALRQAVDLPL-EMHAHNDLGMATANTLAAVRAG-ATHV 214 (365)
T ss_pred CHHHHHHHHHHHHHcCcCEEEEcccC-C-CCCHHHHHHHHHHHHHhcCCeE-EEEecCCCChHHHHHHHHHHhC-CCEE
Confidence 56778899999999999998874321 1 1112224456778888877664 33332 356678888888 6654
No 409
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.22 E-value=1.8 Score=41.09 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=52.3
Q ss_pred ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccC------Cch-hhHHHHHHHHHhcCCcEEEe
Q 017733 227 RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT------DKS-ETQRSLLSMRRAFEGTFIAA 299 (367)
Q Consensus 227 ~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~------~~~-~~~~~~~~ir~~~~~pvi~~ 299 (367)
++++=+.. ...+++...++.++++|+|+|+++-....... ..+ .....++.+|+.++.||.+=
T Consensus 91 p~ivsi~g----------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 91 PVIASIAG----------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred cEEEEEec----------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 67775543 23677889999999999999988643211110 111 12345778888888887742
Q ss_pred --CCC-CH-HHHHHHHHcCCCcEEcc
Q 017733 300 --GGY-SR-DEGNKAVAANYTDLVAF 321 (367)
Q Consensus 300 --Ggi-t~-~~a~~~L~~G~~D~V~~ 321 (367)
... +. +.++.+.+.| +|+|.+
T Consensus 161 l~~~~~~~~~~a~~~~~~G-~d~i~~ 185 (296)
T cd04740 161 LTPNVTDIVEIARAAEEAG-ADGLTL 185 (296)
T ss_pred eCCCchhHHHHHHHHHHcC-CCEEEE
Confidence 233 23 3355566677 898765
No 410
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.22 E-value=0.41 Score=46.09 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=51.1
Q ss_pred HHHHHhhhcCccEEEEecCCccccC----CchhhHHHHHHHHHh------cCCcEEEeCCC-CHHHHHHHHHcCC-----
Q 017733 252 YMAKALNKFKLLYLHVIEPRMIQLT----DKSETQRSLLSMRRA------FEGTFIAAGGY-SRDEGNKAVAANY----- 315 (367)
Q Consensus 252 ~l~~~L~~~Gvd~i~v~~~~~~~~~----~~~~~~~~~~~ir~~------~~~pvi~~Ggi-t~~~a~~~L~~G~----- 315 (367)
..++.+++.|+|.|-+......... +..-.......+.+. .++|||+.||| +-..+..++.-|.
T Consensus 114 ~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~ 193 (320)
T cd04743 114 GLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAER 193 (320)
T ss_pred HHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCccccc
Confidence 3567788999999876432221111 111111222333322 27999999999 8888777777773
Q ss_pred -C-cEEcccHHHHhCCch
Q 017733 316 -T-DLVAFGRLFLANPDL 331 (367)
Q Consensus 316 -~-D~V~~gR~~ladP~l 331 (367)
+ +.|.||..|++-++-
T Consensus 194 Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 194 GAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred ccccEEEEccHHhcchhh
Confidence 2 899999999986665
No 411
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.20 E-value=0.38 Score=46.42 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=44.6
Q ss_pred HHHHHHhhh--cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEE
Q 017733 251 LYMAKALNK--FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 251 ~~l~~~L~~--~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V 319 (367)
.+.++.|.+ .|+|+|.+....-. .....+.++.||+.++...+..|++ |++.+++++..| +|.|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG-AD~v 176 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSG-ADIV 176 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC-CCEE
Confidence 345556665 59999987533211 1224567889999986444555666 999999999999 9986
No 412
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.17 E-value=0.41 Score=47.56 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEccc
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~g 322 (367)
+.+.++.|.++|+|+|.+...... .....+.++.+|+.++ .+|++.+-.|++++..+++.| +|+|.+|
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG-aD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG-ADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC-CCEEEEC
Confidence 567888888999999987433211 1224467888999885 555554444999999999999 9998655
No 413
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.17 E-value=1.3 Score=43.96 Aligned_cols=100 Identities=6% Similarity=-0.097 Sum_probs=60.0
Q ss_pred HHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcccc---C------Cchh-hHHHH
Q 017733 216 VEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQL---T------DKSE-TQRSL 285 (367)
Q Consensus 216 i~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~---~------~~~~-~~~~~ 285 (367)
+..+++..+..+|.+=+.. ..+.+++.++++.+++.|+|+|++--...+.. . ..+. ....+
T Consensus 104 i~~~k~~~~~~pvIaSi~~---------~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~ 174 (385)
T PLN02495 104 FKQLKEEYPDRILIASIME---------EYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVC 174 (385)
T ss_pred HHHHHhhCCCCcEEEEccC---------CCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHH
Confidence 5667766654366653421 23578899999999999999998732211111 0 1111 12345
Q ss_pred HHHHHhcCCcEEE--eCCC-CHHHH-HHHHHcCCCcEEcccHHH
Q 017733 286 LSMRRAFEGTFIA--AGGY-SRDEG-NKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 286 ~~ir~~~~~pvi~--~Ggi-t~~~a-~~~L~~G~~D~V~~gR~~ 325 (367)
+.+++.+++||++ +-.+ +.... +.+++.| +|.|.+.=-+
T Consensus 175 ~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~G-adgi~liNT~ 217 (385)
T PLN02495 175 GWINAKATVPVWAKMTPNITDITQPARVALKSG-CEGVAAINTI 217 (385)
T ss_pred HHHHHhhcCceEEEeCCChhhHHHHHHHHHHhC-CCEEEEeccc
Confidence 6778888899774 3445 44444 4455555 9988875444
No 414
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.15 E-value=0.4 Score=48.91 Aligned_cols=66 Identities=23% Similarity=0.154 Sum_probs=48.9
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEc
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~ 320 (367)
..+.++.|.+.|+|.|.+...... .....+.++.||+.++...+..|++ |.+.++.+++.| +|+|.
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG-ad~v~ 294 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG-ADIVK 294 (479)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC-CCEEE
Confidence 456888888999999876432211 2234567899999986445555777 999999999999 99976
No 415
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.14 E-value=0.98 Score=41.25 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcC-CcEEEeCCCCH--HHHHHHHHcCCCcEEcccHHHHh
Q 017733 282 QRSLLSMRRAFE-GTFIAAGGYSR--DEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 282 ~~~~~~ir~~~~-~pvi~~Ggit~--~~a~~~L~~G~~D~V~~gR~~la 327 (367)
..+++.++.-++ ++++.+||+++ +++.++|+.| +..|++|..++.
T Consensus 146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG-a~avg~Gs~L~~ 193 (222)
T PRK07114 146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG-VTCVGMGSKLIP 193 (222)
T ss_pred HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC-CEEEEEChhhcC
Confidence 356777777765 67999999986 8999999999 899999999874
No 416
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=93.13 E-value=1.9 Score=40.86 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
+.+.+|+++|++.|.|-.+.. +. +.+.+.+-+.+.=...+.++++..|+. | +-|+++.. ++. +.
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S--------~~--h~~~~~~~t~~e~l~~~~~~i~~a~~~-G---~~v~~~~~-d~~-~~ 141 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGS--------LK--HCTEQLRKTPEEHFADIREVIEYAIKN-G---IEVNIYLE-DWS-NG 141 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCC--------HH--HHHHHHCcCHHHHHHHHHHHHHHHHhC-C---CEEEEEEE-eCC-CC
Confidence 357778899999999876442 21 222233334443344445555555443 2 23444443 221 11
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-----CHHHHHHHHHcCCC
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-----SRDEGNKAVAANYT 316 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-----t~~~a~~~L~~G~~ 316 (367)
...+.+...++++.+.+.|++.|.+.... + ...+......++.+++.++ .|+ ..... ....+..+++.| +
T Consensus 142 ~r~~~~~~~~~~~~~~~~G~~~i~l~DT~-G-~~~P~~v~~l~~~l~~~~~~~~i-~~H~Hnd~Gla~AN~laA~~aG-a 217 (280)
T cd07945 142 MRDSPDYVFQLVDFLSDLPIKRIMLPDTL-G-ILSPFETYTYISDMVKRYPNLHF-DFHAHNDYDLAVANVLAAVKAG-I 217 (280)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEecCCC-C-CCCHHHHHHHHHHHHhhCCCCeE-EEEeCCCCCHHHHHHHHHHHhC-C
Confidence 12357788899999999999998875321 1 1111223456778888775 443 34433 256678899999 6
Q ss_pred cEE
Q 017733 317 DLV 319 (367)
Q Consensus 317 D~V 319 (367)
|.|
T Consensus 218 ~~v 220 (280)
T cd07945 218 KGL 220 (280)
T ss_pred CEE
Confidence 655
No 417
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.13 E-value=2.6 Score=37.39 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCcceEE--EeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAERVGM--RLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMR 289 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~v--rls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir 289 (367)
-.+.++++|+..+..++.+ ++.. +. ..+++.+.++|+|++.++.... .......++.++
T Consensus 40 g~~~i~~i~~~~~~~~i~~~~~v~~-----------~~---~~~~~~~~~aGad~i~~h~~~~-----~~~~~~~i~~~~ 100 (202)
T cd04726 40 GMEAVRALREAFPDKIIVADLKTAD-----------AG---ALEAEMAFKAGADIVTVLGAAP-----LSTIKKAVKAAK 100 (202)
T ss_pred CHHHHHHHHHHCCCCEEEEEEEecc-----------cc---HHHHHHHHhcCCCEEEEEeeCC-----HHHHHHHHHHHH
Confidence 3789999999865445444 3321 11 1355777889999999874321 011223455555
Q ss_pred HhcCCcEEE--eCCCCHHHHHHHHHcCCCcEEccc
Q 017733 290 RAFEGTFIA--AGGYSRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 290 ~~~~~pvi~--~Ggit~~~a~~~L~~G~~D~V~~g 322 (367)
+ .+++++. .+-.|+++..+++..| +|+|.+.
T Consensus 101 ~-~g~~~~v~~~~~~t~~e~~~~~~~~-~d~v~~~ 133 (202)
T cd04726 101 K-YGKEVQVDLIGVEDPEKRAKLLKLG-VDIVILH 133 (202)
T ss_pred H-cCCeEEEEEeCCCCHHHHHHHHHCC-CCEEEEc
Confidence 4 3566554 4556999988878777 9999874
No 418
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.11 E-value=0.47 Score=41.13 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=47.8
Q ss_pred HHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEccc
Q 017733 252 YMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 252 ~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 322 (367)
.-.+.+++.+.|++++-.+ -.+..++.+.++++.|||++|=+ |.|+++++|.+| +-.|+-.
T Consensus 112 ~~~~~i~~~~pD~iEvLPG---------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aG-A~avSTs 173 (181)
T COG1954 112 KGIKQIEKSEPDFIEVLPG---------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAG-AVAVSTS 173 (181)
T ss_pred HHHHHHHHcCCCEEEEcCc---------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhC-cEEEeec
Confidence 3445566788999998522 24577899999999999998888 899999999999 5566644
No 419
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.10 E-value=1.5 Score=41.51 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.+.|+++|+..+.. .|.|-.. +.+++.+. .++|+|.|-+...+. .......+.++
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~------------tleea~ea----~~~gaDiI~LDn~s~------e~l~~av~~~~- 236 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVD------------TLDQLEEA----LELGVDAVLLDNMTP------DTLREAVAIVA- 236 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC------------CHHHHHHH----HHcCCCEEEeCCCCH------HHHHHHHHHhC-
Confidence 457788888888632 4555332 34444433 368999887653311 11112222222
Q ss_pred hcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 291 AFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 291 ~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
-+.++-++||++++.++++.+.| +|++++|....
T Consensus 237 -~~~~leaSGGI~~~ni~~yA~tG-VD~Is~Galth 270 (281)
T PRK06106 237 -GRAITEASGRITPETAPAIAASG-VDLISVGWLTH 270 (281)
T ss_pred -CCceEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 23579999999999999999999 99999998766
No 420
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.09 E-value=4 Score=38.14 Aligned_cols=127 Identities=13% Similarity=0.053 Sum_probs=77.4
Q ss_pred hhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017733 87 VEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAAR 166 (367)
Q Consensus 87 ~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~ 166 (367)
+...++.++.+++.|-.+.+++..+++. .| +.+.+.++
T Consensus 111 ~~~~~~~i~~ak~~G~~v~~~~~~~~~~------------------------------~~------------~~~~~~~~ 148 (263)
T cd07943 111 ADVSEQHIGAARKLGMDVVGFLMMSHMA------------------------------SP------------EELAEQAK 148 (263)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCC------------------------------CH------------HHHHHHHH
Confidence 4567889999999998888887554221 11 45677778
Q ss_pred HHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCCh
Q 017733 167 NAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNP 246 (367)
Q Consensus 167 ~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~ 246 (367)
.+.++|.|.|-|- |.+|... +.-+.++++.+|+.++..+|++ ..+.++ +
T Consensus 149 ~~~~~G~d~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~~~~l~~--H~Hn~~-----G-- 197 (263)
T cd07943 149 LMESYGADCVYVT-------------------DSAGAML---PDDVRERVRALREALDPTPVGF--HGHNNL-----G-- 197 (263)
T ss_pred HHHHcCCCEEEEc-------------------CCCCCcC---HHHHHHHHHHHHHhCCCceEEE--EecCCc-----c--
Confidence 8889999988763 4555432 4456899999999987424555 332222 1
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHH
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSM 288 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i 288 (367)
...+..++ ..++|+++++.+-.......+..+....+..+
T Consensus 198 lA~AN~la--Ai~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L 237 (263)
T cd07943 198 LAVANSLA--AVEAGATRIDGSLAGLGAGAGNTPLEVLVAVL 237 (263)
T ss_pred hHHHHHHH--HHHhCCCEEEeecccccCCcCCccHHHHHHHH
Confidence 22222222 22579999998766555443433333333333
No 421
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=93.09 E-value=2.7 Score=37.96 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=72.5
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVD 243 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~ 243 (367)
.+.+.+.+.|.|+||+-. ..+-++.+|+..+-. .-.++++..
T Consensus 68 ~~i~~~~~ld~VQlHG~e-----------------------------~~~~~~~l~~~~~~~v~kai~v~~~-------- 110 (208)
T COG0135 68 LEIAEELGLDAVQLHGDE-----------------------------DPEYIDQLKEELGVPVIKAISVSEE-------- 110 (208)
T ss_pred HHHHHhcCCCEEEECCCC-----------------------------CHHHHHHHHhhcCCceEEEEEeCCc--------
Confidence 345567899999999754 267788888887322 223444431
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccC--CchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcc
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLT--DKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~--~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
.+ . ... .....-+|.+-+......... +...++..+... ....|++..||++|+...++|+.+....|=+
T Consensus 111 ~~-~----~~~-~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDv 182 (208)
T COG0135 111 GD-L----ELA-AREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALGPPYGVDV 182 (208)
T ss_pred cc-h----hhh-hhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhcCCceEEe
Confidence 10 0 111 122334666655432211111 122233333333 4567899999999999999999985488888
Q ss_pred cHHHHhCC
Q 017733 322 GRLFLANP 329 (367)
Q Consensus 322 gR~~ladP 329 (367)
..+.=.+|
T Consensus 183 SSGVE~~p 190 (208)
T COG0135 183 SSGVESSP 190 (208)
T ss_pred ccccccCC
Confidence 88887776
No 422
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=93.02 E-value=0.3 Score=43.98 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=67.8
Q ss_pred HHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCChH
Q 017733 168 AIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPE 247 (367)
Q Consensus 168 a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~ 247 (367)
..++|.|.|-+|.=. ...+.++++.||+. | -..++=++|.. +.
T Consensus 76 ~~~~g~~~i~~H~E~--------------------------~~~~~~~i~~ik~~-g-~k~GialnP~T---------~~ 118 (201)
T PF00834_consen 76 FAEAGADYITFHAEA--------------------------TEDPKETIKYIKEA-G-IKAGIALNPET---------PV 118 (201)
T ss_dssp HHHHT-SEEEEEGGG--------------------------TTTHHHHHHHHHHT-T-SEEEEEE-TTS----------G
T ss_pred HHhcCCCEEEEcccc--------------------------hhCHHHHHHHHHHh-C-CCEEEEEECCC---------Cc
Confidence 356799999998632 12357889999996 2 25677778732 23
Q ss_pred HHHHHHHHHhhhcCccEEEEec--CCccccCCchhhHHHHHHHHHh-----cCCcEEEeCCCCHHHHHHHHHcCCCcEEc
Q 017733 248 ALGLYMAKALNKFKLLYLHVIE--PRMIQLTDKSETQRSLLSMRRA-----FEGTFIAAGGYSRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~--~~~~~~~~~~~~~~~~~~ir~~-----~~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 320 (367)
+. +...|. -+|++.+-. +.+......+....-++.+++. .+..+.+=||++.+.+.++.+.| +|.+.
T Consensus 119 ~~---~~~~l~--~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aG-ad~~V 192 (201)
T PF00834_consen 119 EE---LEPYLD--QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAG-ADIFV 192 (201)
T ss_dssp GG---GTTTGC--CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT---EEE
T ss_pred hH---HHHHhh--hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcC-CCEEE
Confidence 22 111222 377776632 2221111111122223333333 23568888999999999999999 99999
Q ss_pred ccHHHHhC
Q 017733 321 FGRLFLAN 328 (367)
Q Consensus 321 ~gR~~lad 328 (367)
+|++++.+
T Consensus 193 ~Gs~iF~~ 200 (201)
T PF00834_consen 193 AGSAIFKA 200 (201)
T ss_dssp ESHHHHTS
T ss_pred ECHHHhCC
Confidence 99998753
No 423
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.01 E-value=0.45 Score=45.86 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=48.5
Q ss_pred HHHHHHhhhcC--ccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEccc
Q 017733 251 LYMAKALNKFK--LLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 251 ~~l~~~L~~~G--vd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 322 (367)
.+.+..|.++| +|+|.+....-. .....+.++.+|+.++.|.+..|++ |++.|+.+++.| +|.|-++
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG-ad~I~V~ 165 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG-ADATKVG 165 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC-cCEEEEC
Confidence 34555677777 698876432111 1224567889999999998888887 999999999999 8987543
No 424
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=93.00 E-value=8.6 Score=36.63 Aligned_cols=208 Identities=12% Similarity=0.104 Sum_probs=113.2
Q ss_pred HHHHHHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCC
Q 017733 45 PHAILYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGE 124 (367)
Q Consensus 45 ~~~~~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~ 124 (367)
|.+.....+.+ |.-.|.+.+..++.. .+++..--+.-++.+...+++++.+ ..++++=+-
T Consensus 24 D~lSAri~e~a-Gf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~~~---~lPv~aD~d--------------- 83 (290)
T TIGR02321 24 NPLVAKLAEQA-GFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTV---SIPLIADID--------------- 83 (290)
T ss_pred CHHHHHHHHHc-CCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHhcc---CCCEEEECC---------------
Confidence 44445555566 565677777767643 4555322233345566666666555 334443331
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCC-CC
Q 017733 125 APISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEY-GG 203 (367)
Q Consensus 125 ~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~y-Gg 203 (367)
.| +..+ .+..+.+++..++|.-||.|-=.. .++|+.-. -|
T Consensus 84 --------------~G--yG~~------------~~v~~tV~~~~~aGvagi~IEDq~-----------~pk~cg~~~~g 124 (290)
T TIGR02321 84 --------------TG--FGNA------------VNVHYVVPQYEAAGASAIVMEDKT-----------FPKDTSLRTDG 124 (290)
T ss_pred --------------CC--CCCc------------HHHHHHHHHHHHcCCeEEEEeCCC-----------CCcccccccCC
Confidence 11 1111 135677788889999999885432 23443322 12
Q ss_pred --chhhHhHHHHHHHHHHHHHh-CCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCch
Q 017733 204 --SLENRCRFALEVVEAVVREI-GAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKS 279 (367)
Q Consensus 204 --s~enr~r~~~eii~aiR~~v-g~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~ 279 (367)
.+. ......+-|+++|++. +++ .|.-|.-.. +. ....+++++-++...++|+|.|-+..+.
T Consensus 125 ~~~l~-~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~--~~----~~g~deAI~Ra~aY~eAGAD~ifv~~~~-------- 189 (290)
T TIGR02321 125 RQELV-RIEEFQGKIAAATAARADRDFVVIARVEAL--IA----GLGQQEAVRRGQAYEEAGADAILIHSRQ-------- 189 (290)
T ss_pred Ccccc-CHHHHHHHHHHHHHhCCCCCEEEEEEeccc--cc----cCCHHHHHHHHHHHHHcCCCEEEecCCC--------
Confidence 122 2334455666666654 333 455676542 11 2235788888999999999988764221
Q ss_pred hhHHHHHHHHHhcC--CcEEEeCCCCHH-HHHHHHHcCCCcEEcccHHHH
Q 017733 280 ETQRSLLSMRRAFE--GTFIAAGGYSRD-EGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 280 ~~~~~~~~ir~~~~--~pvi~~Ggit~~-~a~~~L~~G~~D~V~~gR~~l 326 (367)
...+.++.+.+.++ +||+...+-++. ...++-+-|.+.+|+.+-.++
T Consensus 190 ~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~ 239 (290)
T TIGR02321 190 KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAI 239 (290)
T ss_pred CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHH
Confidence 12345666777776 477554432221 223444556577888884433
No 425
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=92.98 E-value=1.9 Score=42.67 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=80.6
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~ 244 (367)
.+++.++|++.|.|.... | --++..+++.+.+.-.+.+.+.++.+|+. | +-|+++..+ ...
T Consensus 81 i~~a~~~g~~~i~i~~~~--------S--d~h~~~~~~~s~~~~l~~~~~~v~~a~~~-G---~~v~~~~ed-----~~r 141 (378)
T PRK11858 81 IDASIDCGVDAVHIFIAT--------S--DIHIKHKLKKTREEVLERMVEAVEYAKDH-G---LYVSFSAED-----ASR 141 (378)
T ss_pred HHHHHhCCcCEEEEEEcC--------C--HHHHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEecc-----CCC
Confidence 445667899998886543 1 22445566777666666666677766664 2 234445421 112
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC--CC--CHHHHHHHHHcCCCcEE
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG--GY--SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G--gi--t~~~a~~~L~~G~~D~V 319 (367)
.+.+...++++.+.++|++.|.+..-. + ...+......++.+++.+++|+-.=+ .+ ....+..+++.| ++.|
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G-~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aG-a~~v 217 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTV-G-ILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAG-AKQV 217 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccC-C-CCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcC-CCEE
Confidence 356788899999999999998875321 1 11112234567778888766643322 12 345677888888 6644
No 426
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.98 E-value=2.8 Score=38.77 Aligned_cols=200 Identities=17% Similarity=0.193 Sum_probs=114.5
Q ss_pred HHHHhhcCCCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcc
Q 017733 49 LYYSQRTTNGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPIS 128 (367)
Q Consensus 49 ~~y~~~a~g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ 128 (367)
....+.+ |.-.+.+.+..++.. .+.+..-.+.-++.+...+++++.+ ..++++=+- +|. +
T Consensus 22 Ar~~e~~-Gf~ai~~sg~~~a~s-~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d------------~Gy---G 81 (238)
T PF13714_consen 22 ARLAERA-GFDAIATSGAGVAAS-LGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDAD------------TGY---G 81 (238)
T ss_dssp HHHHHHT-T-SEEEEHHHHHHHH-TTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-T------------TTS---S
T ss_pred HHHHHHc-CCCEEEechHHHHHH-cCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEcc------------ccc---C
Confidence 3344455 555577776766532 2444322233456667777776665 455654441 111 1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhH
Q 017733 129 STSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENR 208 (367)
Q Consensus 129 ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr 208 (367)
..| .+..+.+++..++|+.||.|-=. |+..-+..+. -
T Consensus 82 ---------------~~~------------~~v~~tv~~~~~aG~agi~IEDq---------------~~~~~~~~l~-~ 118 (238)
T PF13714_consen 82 ---------------NDP------------ENVARTVRELERAGAAGINIEDQ---------------RCGHGGKQLV-S 118 (238)
T ss_dssp ---------------SSH------------HHHHHHHHHHHHCT-SEEEEESB---------------STTTSTT-B---
T ss_pred ---------------chh------------HHHHHHHHHHHHcCCcEEEeecc---------------ccCCCCCcee-C
Confidence 112 46788888889999999998643 2211122333 3
Q ss_pred hHHHHHHHHHHHHHhCC-c-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHH
Q 017733 209 CRFALEVVEAVVREIGA-E-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLL 286 (367)
Q Consensus 209 ~r~~~eii~aiR~~vg~-~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ 286 (367)
.....+-|++++++..+ + .|.-|.-.. .. .....+++++-++...++|+|.+-+... ...+.++
T Consensus 119 ~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~--~~---~~~~~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~ 184 (238)
T PF13714_consen 119 PEEMVAKIRAAVDARRDPDFVIIARTDAF--LR---AEEGLDEAIERAKAYAEAGADMIFIPGL---------QSEEEIE 184 (238)
T ss_dssp HHHHHHHHHHHHHHHSSTTSEEEEEECHH--CH---HHHHHHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEecccc--cc---CCCCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHH
Confidence 44556666777776653 3 466677542 00 1235788889999999999998876422 1234477
Q ss_pred HHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 287 SMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 287 ~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
++.+.++.|+..+-.-..-..+++-+-| +.+|+.+-.++
T Consensus 185 ~~~~~~~~Pl~v~~~~~~~~~~eL~~lG-v~~v~~~~~~~ 223 (238)
T PF13714_consen 185 RIVKAVDGPLNVNPGPGTLSAEELAELG-VKRVSYGNSLL 223 (238)
T ss_dssp HHHHHHSSEEEEETTSSSS-HHHHHHTT-ESEEEETSHHH
T ss_pred HHHHhcCCCEEEEcCCCCCCHHHHHHCC-CcEEEEcHHHH
Confidence 7888889997776532125667777788 88998876554
No 427
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.92 E-value=2.7 Score=39.96 Aligned_cols=135 Identities=13% Similarity=0.040 Sum_probs=79.8
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcc--eEEEeCCCccccccCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAER--VGMRLSPYAECAEAVD 243 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~--i~vrls~~~~~~~~~~ 243 (367)
++|.++|.|.|.+-.+.- +. +...+++-+.+.-.+-+.++|+..|+.-..-. |..=++.. + .+
T Consensus 86 e~A~~~g~~~v~i~~~~s--------~~--~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~--~---~~ 150 (287)
T PRK05692 86 EAALAAGADEVAVFASAS--------EA--FSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP--Y---EG 150 (287)
T ss_pred HHHHHcCCCEEEEEEecC--------HH--HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC--C---CC
Confidence 667789999998876442 11 12233444555545556666666666522111 12112211 1 11
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-----CHHHHHHHHHcCCCc
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-----SRDEGNKAVAANYTD 317 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-----t~~~a~~~L~~G~~D 317 (367)
..+.+...++++.+.+.|+|.|.+....- ...+......++.+++.++ .|+ ..... ....+..+++.| +|
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G--~~~P~~v~~lv~~l~~~~~~~~i-~~H~Hn~~Gla~AN~laA~~aG-~~ 226 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIG--VGTPGQVRAVLEAVLAEFPAERL-AGHFHDTYGQALANIYASLEEG-IT 226 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccC--ccCHHHHHHHHHHHHHhCCCCeE-EEEecCCCCcHHHHHHHHHHhC-CC
Confidence 23578889999999999999988753211 1112223456788888886 454 33332 467788999999 88
Q ss_pred EE
Q 017733 318 LV 319 (367)
Q Consensus 318 ~V 319 (367)
.|
T Consensus 227 ~i 228 (287)
T PRK05692 227 VF 228 (287)
T ss_pred EE
Confidence 77
No 428
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.90 E-value=0.52 Score=48.30 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=48.3
Q ss_pred HHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHcCCCcEEcc
Q 017733 251 LYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 251 ~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
.+.++.|.++|+|.|++....-. .....+.++.||+.++ .+|++++..|+++++.+++.| +|+|-+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aG-ad~I~v 309 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAG-ADGLRI 309 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 67788899999999998643111 1123467888999874 566664334999999999999 999943
No 429
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.90 E-value=8.3 Score=36.22 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc--ccCC-chhhHHHHHHHH
Q 017733 213 LEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI--QLTD-KSETQRSLLSMR 289 (367)
Q Consensus 213 ~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~--~~~~-~~~~~~~~~~ir 289 (367)
.++++++ ...| .||.++-+. ..+.+++...++.+...|-.-+++..+... ..+. ...+...+..+|
T Consensus 124 ~~LL~~~-a~~g-kPV~lk~G~---------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk 192 (266)
T PRK13398 124 FELLKEV-GKTK-KPILLKRGM---------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIK 192 (266)
T ss_pred HHHHHHH-hcCC-CcEEEeCCC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 4455555 2333 388887764 224677888888888888765666554321 1111 112344566788
Q ss_pred HhcCCcEEEeCC--CC-----HHHHHHHHHcCCCcEEcccH
Q 017733 290 RAFEGTFIAAGG--YS-----RDEGNKAVAANYTDLVAFGR 323 (367)
Q Consensus 290 ~~~~~pvi~~Gg--it-----~~~a~~~L~~G~~D~V~~gR 323 (367)
+.+..||+..-. .. +..+..+++.| +|.+++=+
T Consensus 193 ~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~G-a~Gl~iE~ 232 (266)
T PRK13398 193 ELSHLPIIVDPSHATGRRELVIPMAKAAIAAG-ADGLMIEV 232 (266)
T ss_pred hccCCCEEEeCCCcccchhhHHHHHHHHHHcC-CCEEEEec
Confidence 888889888322 23 67788999999 89777654
No 430
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.89 E-value=4.7 Score=37.56 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 82 WTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 82 ~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
..++.++.++++++.+++.|..+.+.+...+| ..+ +.+
T Consensus 104 ~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------------------------------~~~------------~~~ 141 (259)
T cd07939 104 DRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR------------------------------ADP------------DFL 141 (259)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC------------------------------CCH------------HHH
Confidence 34556788999999999999766655533221 011 456
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+.++++.++|.|.|-|- |..|... +.-+.++++++|+.++ .+|++ ....++
T Consensus 142 ~~~~~~~~~~G~~~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~-~~l~~--H~Hn~~--- 193 (259)
T cd07939 142 IEFAEVAQEAGADRLRFA-------------------DTVGILD---PFTTYELIRRLRAATD-LPLEF--HAHNDL--- 193 (259)
T ss_pred HHHHHHHHHCCCCEEEeC-------------------CCCCCCC---HHHHHHHHHHHHHhcC-CeEEE--EecCCC---
Confidence 777788888999988763 4445432 3446888999999886 44555 332222
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHh
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRA 291 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~ 291 (367)
+ ...+..++ ..++|+++|+.+-..+....+..+....+..+.+.
T Consensus 194 --G--la~An~la--Ai~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 194 --G--LATANTLA--AVRAGATHVSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred --C--hHHHHHHH--HHHhCCCEEEEecccccccccCcCHHHHHHHHHHh
Confidence 1 22222222 23689999998766655444444444444445443
No 431
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.88 E-value=2.2 Score=44.84 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=79.1
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~ 244 (367)
+++|.++|.|.|.|..+.. ..+-+.+.++.+|+. |.. +.+-++.. +.+ .
T Consensus 102 v~~A~~~Gvd~irif~~ln------------------------d~~n~~~~i~~ak~~-G~~-v~~~i~~t--~~p---~ 150 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALN------------------------DVRNMEVAIKAAKKA-GAH-VQGTISYT--TSP---V 150 (592)
T ss_pred HHHHHHCCCCEEEEEEecC------------------------hHHHHHHHHHHHHHc-CCE-EEEEEEec--cCC---C
Confidence 3455678999999866441 123345556666654 322 22212110 000 2
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEE----eCCCCHHHHHHHHHcCCCcEE-
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIA----AGGYSRDEGNKAVAANYTDLV- 319 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~----~Ggit~~~a~~~L~~G~~D~V- 319 (367)
.+.+...++++.+.+.|+|.|.+..-.- ...........+.+|+.+++||-. +.|+.......++++| ||.|
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~G--~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aG-ad~vD 227 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMAG--LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAG-VDIID 227 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCC--CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhC-CCEEE
Confidence 3578889999999999999998753211 111122345678899988877543 2233467788999999 7866
Q ss_pred ----cccHHHHhCCchH
Q 017733 320 ----AFGRLFLANPDLP 332 (367)
Q Consensus 320 ----~~gR~~ladP~l~ 332 (367)
++|.+. .||.+-
T Consensus 228 ~ai~g~g~~a-gn~~~e 243 (592)
T PRK09282 228 TAISPLAFGT-SQPPTE 243 (592)
T ss_pred eeccccCCCc-CCHhHH
Confidence 455543 466543
No 432
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.83 E-value=0.5 Score=47.86 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcc
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
..+.++.|.++|+|.|++...... .....+.++.+|+.+ +.||++++..|++++..+++.| +|+|-+
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG-ad~i~v 292 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG-ADGLRV 292 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC-CCEEEE
Confidence 345666788899999998543211 123456788899886 6788885666999999999999 999853
No 433
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.82 E-value=2.2 Score=39.51 Aligned_cols=138 Identities=21% Similarity=0.127 Sum_probs=79.0
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.+.+++++++|+|.|.|...--- .++. -+++-+.+.....+.+.++.+|+.-- .+ .++... ...+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~~~~---------~~~~~~~~~~~~~~~~~i~~a~~~G~--~v--~~~~~~-~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-THSR---------KNLNKSREEDLENAEEAIEAAKEAGL--EV--EGSLED-AFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-HHHH---------HHhCCCHHHHHHHHHHHHHHHHHCCC--eE--EEEEEe-ecCC
Confidence 45677888999999998765421 1111 12333344445555666666655421 22 222210 1000
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeC----CCCHHHHHHHHHcCCC
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAG----GYSRDEGNKAVAANYT 316 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~G----git~~~a~~~L~~G~~ 316 (367)
..+.++..++++.+.+.|++.|.+... .. ...+......++.+++.++ +++-.=+ |+....+..+++.| +
T Consensus 142 --~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G-~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG-~ 216 (265)
T cd03174 142 --KTDPEYVLEVAKALEEAGADEISLKDT-VG-LATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAG-A 216 (265)
T ss_pred --CCCHHHHHHHHHHHHHcCCCEEEechh-cC-CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcC-C
Confidence 135677888999999999999887432 11 1122223456788888887 4443322 12367788999999 6
Q ss_pred cEE
Q 017733 317 DLV 319 (367)
Q Consensus 317 D~V 319 (367)
|.|
T Consensus 217 ~~i 219 (265)
T cd03174 217 DRV 219 (265)
T ss_pred CEE
Confidence 755
No 434
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.75 E-value=4.1 Score=38.85 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+-+|+.+.++||++|-+.+.. ++. .+.--.|. | +.. ..-.++.++.|.+++. -||.+.+-.
T Consensus 27 a~SAri~e~~Gf~ai~~Sg~~---~a~----~~lG~PD~--g-~l~-~~e~~~~~~~I~~~~~-iPviaD~d~------- 87 (292)
T PRK11320 27 AYHALLAERAGFKAIYLSGGG---VAA----ASLGLPDL--G-ITT-LDDVLIDVRRITDACD-LPLLVDIDT------- 87 (292)
T ss_pred HHHHHHHHHcCCCEEEeCHHH---HHh----HhcCCCCC--C-CCC-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 567888999999999975432 221 01122231 1 111 1223555555555553 378776532
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCcc----ccCCc--hhhHHHHHHHHHhc----CCcEEEeCCC---------
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMI----QLTDK--SETQRSLLSMRRAF----EGTFIAAGGY--------- 302 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~----~~~~~--~~~~~~~~~ir~~~----~~pvi~~Ggi--------- 302 (367)
+.+ ........++.++++|+.-||+-..... ...+. .+...++.+|+... +.+++.+-+-
T Consensus 88 GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 166 (292)
T PRK11320 88 GFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLD 166 (292)
T ss_pred CCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHH
Confidence 223 3556778899999999999999654321 11111 11223444444332 2334444432
Q ss_pred -CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhC
Q 017733 303 -SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 303 -t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g 338 (367)
..+-++.+.+.| +|+|.+ +.+.+++.++++.+.
T Consensus 167 eAI~Ra~aY~eAG-AD~ifi--~~~~~~~~i~~~~~~ 200 (292)
T PRK11320 167 AAIERAQAYVEAG-ADMIFP--EAMTELEMYRRFADA 200 (292)
T ss_pred HHHHHHHHHHHcC-CCEEEe--cCCCCHHHHHHHHHh
Confidence 134467888888 999998 346788888888774
No 435
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.63 E-value=0.086 Score=46.22 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=47.4
Q ss_pred HHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHh
Q 017733 252 YMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLA 327 (367)
Q Consensus 252 ~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~la 327 (367)
.-.+.+++...|++++-.+ ..+..++.+++.++.|+|++|=+ |.++.+++|++| ++.|+-+..-++
T Consensus 108 ~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aG-a~aVSTS~~~LW 174 (175)
T PF04309_consen 108 TGIKQIEQSKPDAVEILPG---------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAG-ADAVSTSNKELW 174 (175)
T ss_dssp HHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTT-CEEEEE--HHHC
T ss_pred HHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcC-CEEEEcCChHhc
Confidence 3455667788999998522 13356777888889999998878 899999999999 899988776553
No 436
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.52 E-value=1.8 Score=42.61 Aligned_cols=85 Identities=18% Similarity=0.107 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
++|++.+..+...|.|.|+..-. |-+|-++ +++.|.+.+.+.+++..+++|.. ...+=++.
T Consensus 141 ~~~a~~~~~~~~gGvD~IKdDe~---l~~~~~~------------p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita--- 202 (364)
T cd08210 141 AELAELAYAFALGGIDIIKDDHG---LADQPFA------------PFEERVKACQEAVAEANAETGGRTLYAPNVTG--- 202 (364)
T ss_pred HHHHHHHHHHHhcCCCeeecCcc---ccCccCC------------CHHHHHHHHHHHHHHHHhhcCCcceEEEecCC---
Confidence 46778888888899999974321 2233333 45789999999999999999875 34443332
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEec
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIE 269 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~ 269 (367)
..++..+.++..+++|.+.+-+.-
T Consensus 203 --------~~~em~~ra~~a~~~Ga~~vMv~~ 226 (364)
T cd08210 203 --------PPTQLLERARFAKEAGAGGVLIAP 226 (364)
T ss_pred --------CHHHHHHHHHHHHHcCCCEEEeec
Confidence 245778888888999998887653
No 437
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.42 E-value=4.2 Score=39.51 Aligned_cols=82 Identities=20% Similarity=0.071 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCcc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAE 237 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~ 237 (367)
+.+++.++.+.++|.|.|-|- |.+|... +.-+.++++++|+.++++ +|++ ...++
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~-------------------DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~--H~Hnn 198 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIV-------------------DSAGAML---PDDVRDRVRALKAVLKPETQVGF--HAHHN 198 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEc-------------------cCCCCCC---HHHHHHHHHHHHHhCCCCceEEE--EeCCC
Confidence 567888888999999998863 4555432 345689999999999754 5665 33221
Q ss_pred ccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc
Q 017733 238 CAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI 273 (367)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~ 273 (367)
+ + ...+..++ ..++|+++|+.+-..+.
T Consensus 199 l-----G--la~ANsla--Ai~aGa~~iD~Sl~G~G 225 (333)
T TIGR03217 199 L-----S--LAVANSIA--AIEAGATRIDASLRGLG 225 (333)
T ss_pred C-----c--hHHHHHHH--HHHhCCCEEEeeccccc
Confidence 1 1 22122222 23689999998765444
No 438
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.36 E-value=2.8 Score=39.03 Aligned_cols=137 Identities=14% Similarity=0.064 Sum_probs=81.3
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~ 244 (367)
..++.++|+|.|.+....- +. +....++-+.+.=.+.+.++++.+|+. | +.|+++..+ ...
T Consensus 75 v~~a~~~g~~~i~i~~~~s--------~~--~~~~~~~~~~~~~~~~~~~~i~~a~~~-G---~~v~~~~~~-----~~~ 135 (259)
T cd07939 75 IEAALRCGVTAVHISIPVS--------DI--HLAHKLGKDRAWVLDQLRRLVGRAKDR-G---LFVSVGAED-----ASR 135 (259)
T ss_pred HHHHHhCCcCEEEEEEecC--------HH--HHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEeecc-----CCC
Confidence 3567789999999876431 11 112233444444445556666666654 2 234455421 112
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-----CHHHHHHHHHcCCCcEE
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-----SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t~~~a~~~L~~G~~D~V 319 (367)
.+.+...++++.+.+.|++.|.+.... + ...+......+..+++.+++|+ ..... ....+..+++.| +|.|
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~-G-~~~P~~v~~lv~~l~~~~~~~l-~~H~Hn~~Gla~An~laAi~aG-~~~v 211 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTV-G-ILDPFTTYELIRRLRAATDLPL-EFHAHNDLGLATANTLAAVRAG-ATHV 211 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCC-C-CCCHHHHHHHHHHHHHhcCCeE-EEEecCCCChHHHHHHHHHHhC-CCEE
Confidence 357788899999999999998874321 1 1112223456778888887654 33333 356778899999 6755
Q ss_pred -----cccHH
Q 017733 320 -----AFGRL 324 (367)
Q Consensus 320 -----~~gR~ 324 (367)
+||+.
T Consensus 212 d~s~~G~G~~ 221 (259)
T cd07939 212 SVTVNGLGER 221 (259)
T ss_pred EEeccccccc
Confidence 56653
No 439
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=92.31 E-value=2.5 Score=39.83 Aligned_cols=58 Identities=29% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeC
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLS 233 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls 233 (367)
++.++.|..|.+||...|-+|. |.|+= |..........|++++||+++++-+|.+-.+
T Consensus 26 eEia~~A~~c~~AGAa~vH~H~----------------R~~~~-G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg 83 (272)
T PF05853_consen 26 EEIAADAVACYEAGAAIVHIHA----------------RDDED-GRPSLDPELYAEVVEAIRAACPDLIVQPTTG 83 (272)
T ss_dssp HHHHHHHHHHHHHTESEEEE-E----------------E-TTT-S-EE--HHHHHHHHHHHHHHSTTSEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEeec----------------CCCCC-CCcCCCHHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 4568899999999999999985 42332 3344567889999999999976435555433
No 440
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.16 E-value=7.2 Score=37.18 Aligned_cols=75 Identities=13% Similarity=-0.075 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccC---------Cch-hhHHHHHHHHHhcCCcEEEeCCC---CH-HHHHHHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLT---------DKS-ETQRSLLSMRRAFEGTFIAAGGY---SR-DEGNKAV 311 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~---------~~~-~~~~~~~~ir~~~~~pvi~~Ggi---t~-~~a~~~L 311 (367)
..+++.++++.+++.|+|+|++--+...... ..+ ...+.++.+++.+++||.+=-.. +. +.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Confidence 4577889999999889999987332211100 011 12345677888888897765332 22 4455566
Q ss_pred HcCCCcEEcc
Q 017733 312 AANYTDLVAF 321 (367)
Q Consensus 312 ~~G~~D~V~~ 321 (367)
+.| +|.|.+
T Consensus 191 ~~G-adgi~~ 199 (299)
T cd02940 191 EGG-ADGVSA 199 (299)
T ss_pred HcC-CCEEEE
Confidence 666 998874
No 441
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=91.93 E-value=5.9 Score=41.87 Aligned_cols=209 Identities=17% Similarity=0.127 Sum_probs=123.4
Q ss_pred ccccCCeee--CCceeeCcCCCCccCCCCCCHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCCCCCcCCCHHhhhhhhH
Q 017733 16 AYKMGQFNL--SHRMVLAPLTRIRSYNHIPQPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYPNTPGIWTKEQVEAWKP 92 (367)
Q Consensus 16 Pl~ig~~~l--kNRiv~apm~~~~~~~g~~t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~~~~~~~~~~~~~~~~~ 92 (367)
.++||++.+ -|+|....|+...+.| ++..++=-.+.+. |+.+|=. . .-+.+..+.++.
T Consensus 82 ~V~VG~v~iGG~~PI~VQSMt~t~T~D---~eatv~Qi~~l~~aGceiVRv-----t-----------v~~~~~A~al~~ 142 (733)
T PLN02925 82 TVMVGNVALGSEHPIRIQTMTTTDTKD---VEATVDQVMRIADKGADIVRI-----T-----------VQGKKEADACFE 142 (733)
T ss_pred EEEEcCEeECCCCceEEEecCCCCccc---HHHHHHHHHHHHHcCCCEEEE-----c-----------CCCHHHHHhHHH
Confidence 378888776 6999999998764433 4455555666665 3333321 1 123456778888
Q ss_pred HHHHHHHcC--CeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCC--CCCCCCChH----HHHHHHHHHHHH
Q 017733 93 IVDAVHQKG--GIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDW--SPPRPLSIE----EIPKIVNDFRLA 164 (367)
Q Consensus 93 l~~~vh~~g--~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~--~~~~~mt~~----eI~~ii~~f~~a 164 (367)
+.+...+.| .++++-+...-+.+.... -.-..++..|+.-+... ..-.+-|++ |++.|-+.|..-
T Consensus 143 I~~~L~~~g~~iPLVADIHF~~~~Al~a~-------~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~ 215 (733)
T PLN02925 143 IKNTLVQKGYNIPLVADIHFAPSVALRVA-------ECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPL 215 (733)
T ss_pred HHHHHhhcCCCCCEEEecCCCHHHHHHHH-------HhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHH
Confidence 888877777 456666543333221100 01122333332111000 011233444 467788889999
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccccCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAEAVD 243 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~ 243 (367)
++.|++.|. .|.|=.-||.|=.++++ .||.+.+.-..-++|-++-+++.-=.+ .+.+|-|--
T Consensus 216 v~~ak~~~~-~iRIGvN~GSLs~ri~~--------~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~-------- 278 (733)
T PLN02925 216 VEKCKKYGR-AMRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNP-------- 278 (733)
T ss_pred HHHHHHCCC-CEEEecCCcCchHHHHH--------HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCh--------
Confidence 999999987 78888889999888886 477665554445555555444432122 456666531
Q ss_pred CChHHHHHHHHHHhhhcCccE-EEE
Q 017733 244 SNPEALGLYMAKALNKFKLLY-LHV 267 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~-i~v 267 (367)
...+.....++..|.+.|++| +|+
T Consensus 279 ~~~V~AyR~La~~L~~~g~~yPLhL 303 (733)
T PLN02925 279 VVMVQAYRLLVAEMYVLGWDYPLHL 303 (733)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEE
Confidence 234566778888888888887 444
No 442
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=91.90 E-value=2.3 Score=41.70 Aligned_cols=101 Identities=9% Similarity=0.003 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc---ccCCchhh---HHHH
Q 017733 212 ALEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI---QLTDKSET---QRSL 285 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~---~~~~~~~~---~~~~ 285 (367)
..+-++.+|+..++.++.+=|+.... ...+.++..+.++. .+.|++.++-.... .+.....+ .+.+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~-----~~~~~~~~~~~~~~---~~adal~l~l~~~qe~~~p~g~~~f~~~le~i 178 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQL-----YGYGVEEAQRAVEM---IEADALQIHLNPLQELVQPEGDRDFRGWLDNI 178 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCcccc-----CCCCHHHHHHHHHh---cCCCcEEEeCccchhhcCCCCcccHHHHHHHH
Confidence 46778889998876677775554211 12234544444444 45677766543211 11222122 2567
Q ss_pred HHHHHhcCCcEEE--e-CCCCHHHHHHHHHcCCCcEEcc
Q 017733 286 LSMRRAFEGTFIA--A-GGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 286 ~~ir~~~~~pvi~--~-Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
+.+++.+++||++ + .+.+.+++..+.+.| +|+|-+
T Consensus 179 ~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~G-vd~I~V 216 (352)
T PRK05437 179 AEIVSALPVPVIVKEVGFGISKETAKRLADAG-VKAIDV 216 (352)
T ss_pred HHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcC-CCEEEE
Confidence 8889988999886 3 346899999999998 999876
No 443
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=91.89 E-value=3.5 Score=39.54 Aligned_cols=149 Identities=14% Similarity=0.047 Sum_probs=77.0
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc-cccC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC-AEAV 242 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~-~~~~ 242 (367)
.++++++.|.|+|++-.-+ |.|+=-.--+.+..|+.+|.+++++.-= +..+-+-.++.- .+..
T Consensus 111 s~~rike~GadavK~Llyy--------------~pD~~~ein~~k~a~vervg~ec~a~di--pf~lE~ltYd~~~~~~~ 174 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYY--------------DVDDAEEINIQKKAYIERIGSECVAEDI--PFFLEVLTYDDNIPDNG 174 (325)
T ss_pred cHHHHHHhCCCeEEEEEEe--------------CCCCChHHHHHHHHHHHHHHHHHHHCCC--CeEEEEeccCCCCCCCC
Confidence 5778899999999987643 3331111111233444555555544321 444444332111 0100
Q ss_pred CC----ChHHHHHHHHHHhhh--cCccEEEEecCCccc---cCCc----hhhHHHHHHHHH---hcCCc-EEEeCCCCHH
Q 017733 243 DS----NPEALGLYMAKALNK--FKLLYLHVIEPRMIQ---LTDK----SETQRSLLSMRR---AFEGT-FIAAGGYSRD 305 (367)
Q Consensus 243 ~~----~~~~~~~~l~~~L~~--~Gvd~i~v~~~~~~~---~~~~----~~~~~~~~~ir~---~~~~p-vi~~Ggit~~ 305 (367)
.. .-.+.....++.+.+ .|||.+-|-.|--.. .... .......+.+++ ..++| |+.+.|.+.+
T Consensus 175 ~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV~~~ 254 (325)
T TIGR01232 175 SVEFAKVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVSAE 254 (325)
T ss_pred cHHHHHhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCCHH
Confidence 00 012223355666655 789988774332110 0000 011234444554 56788 8889999766
Q ss_pred HHH----HHHHcCCC--cEEcccHHHHhCC
Q 017733 306 EGN----KAVAANYT--DLVAFGRLFLANP 329 (367)
Q Consensus 306 ~a~----~~L~~G~~--D~V~~gR~~ladP 329 (367)
.+. -+.++| + ..|..||+.=+|+
T Consensus 255 ~F~~~l~~A~~aG-a~fsGvL~GRAtW~~~ 283 (325)
T TIGR01232 255 LFQETLKFAHEAG-AKFNGVLCGRATWSGA 283 (325)
T ss_pred HHHHHHHHHHHcC-CCcceEEeehhhhHhh
Confidence 554 444556 5 6999999987765
No 444
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.82 E-value=8.5 Score=35.92 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+-.|+.+.++|||+|-+ +.. +....+- ..|.-.-+ +.-.+..+++|++.++...|.+.+ ++ .
T Consensus 22 ~~sA~l~e~aG~d~i~v-Gds--~~~~~lG-----~pDt~~vt----l~em~~~~~~V~r~~~~p~viaD~-~f---g-- 83 (254)
T cd06557 22 YPTAKLADEAGVDVILV-GDS--LGMVVLG-----YDSTLPVT----LDEMIYHTRAVRRGAPRALVVADM-PF---G-- 83 (254)
T ss_pred HHHHHHHHHcCCCEEEE-CHH--HHHHHcC-----CCCCCCcC----HHHHHHHHHHHHhcCCCCeEEEeC-CC---C--
Confidence 45778888999999963 211 1111110 11110112 233466777777776532266655 21 1
Q ss_pred CCCChHHHHHHH-HHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc--CCcEE-----------EeCCC-----
Q 017733 242 VDSNPEALGLYM-AKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF--EGTFI-----------AAGGY----- 302 (367)
Q Consensus 242 ~~~~~~~~~~~l-~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~--~~pvi-----------~~Ggi----- 302 (367)
+..++.+++..- .+.++++|++.+++-.+ ......|+..+ .+||+ ..|++
T Consensus 84 ~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-----------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~gr 152 (254)
T cd06557 84 SYQTSPEQALRNAARLMKEAGADAVKLEGG-----------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGK 152 (254)
T ss_pred cccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccC
Confidence 113345665555 44455599999998533 13334444433 46666 34543
Q ss_pred CH-------HHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCCCC--------CCCCCcccccCCCCCCcccC
Q 017733 303 SR-------DEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPL--------NKYNRSTFYIPDPVVGYTDY 361 (367)
Q Consensus 303 t~-------~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~~~--------~~~~~~~~~~~~~~~~~~~~ 361 (367)
|. +.+..+.+.| ||+|.+ ..+- .++.+++.+..++ ..||-..+-+ -+-+|+...
T Consensus 153 t~~~a~~~i~ra~a~~~AG-A~~i~l--E~v~-~~~~~~i~~~v~iP~igiGaG~~~dgqvlv~-~D~lG~~~~ 221 (254)
T cd06557 153 TEEEAERLLEDALALEEAG-AFALVL--ECVP-AELAKEITEALSIPTIGIGAGPDCDGQVLVW-HDMLGLSPG 221 (254)
T ss_pred CHHHHHHHHHHHHHHHHCC-CCEEEE--cCCC-HHHHHHHHHhCCCCEEEeccCCCCCceeehH-HhhcCCCCC
Confidence 33 3455666788 898877 3332 3577777766432 4566555544 344666554
No 445
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.81 E-value=13 Score=36.08 Aligned_cols=86 Identities=14% Similarity=-0.035 Sum_probs=57.4
Q ss_pred ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecC---CccccCCchhhHHHHHHHHHhcCCcEEEeCCC-
Q 017733 227 RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEP---RMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY- 302 (367)
Q Consensus 227 ~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~---~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi- 302 (367)
||.++-+. ..+.+++...++.+...|-.-+.+..+ ++........+...+..+|+.+..||++--..
T Consensus 202 PViLk~G~---------~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~ 272 (335)
T PRK08673 202 PVLLKRGM---------SATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHA 272 (335)
T ss_pred cEEEeCCC---------CCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCC
Confidence 88887765 235677888888888888766666554 23211122234456778888888999775333
Q ss_pred ------CHHHHHHHHHcCCCcEEccc
Q 017733 303 ------SRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 303 ------t~~~a~~~L~~G~~D~V~~g 322 (367)
-+..+..+++.| +|.+.+=
T Consensus 273 ~G~~~~v~~~a~AAvA~G-AdGliIE 297 (335)
T PRK08673 273 TGKRDLVEPLALAAVAAG-ADGLIVE 297 (335)
T ss_pred CccccchHHHHHHHHHhC-CCEEEEE
Confidence 146788999999 8977664
No 446
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=91.81 E-value=8.8 Score=41.77 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=122.7
Q ss_pred CHHHHHHHHhhcC-CCeeEEEccceeCCCCCCCC----CCC----------------cCCCHHhhhhhhHHHHHHHHcCC
Q 017733 44 QPHAILYYSQRTT-NGGFLIAEATGVSNTAQGYP----NTP----------------GIWTKEQVEAWKPIVDAVHQKGG 102 (367)
Q Consensus 44 t~~~~~~y~~~a~-g~Glii~e~~~v~~~g~~~~----~~~----------------~~~~~~~~~~~~~l~~~vh~~g~ 102 (367)
+...+....+... |.||.=||.+..+..+ ..+ ..+ ..|-+++.+.++++++..+ |-
T Consensus 487 ~~~~~~~~~~~ga~GiGL~RtE~l~~~~~~-~~p~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~--~~ 563 (782)
T TIGR01418 487 NPEVAFRFAALPNDGVGLARIEFIILNWIG-KHPLALIDDDDLESVEKEELTAGGPRDFFVDKLAEGIAKVAAAFY--PK 563 (782)
T ss_pred CHHHHHHHHhCCCceEEEccchhhhhcccc-cChhhhhhCCCHHHHHHhhccccchhHHHHHHHHHHHHHHHHHcC--CC
Confidence 4444455555554 8899999998886422 111 000 1122455567777776664 56
Q ss_pred eeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-HhCCCEEEEecc
Q 017733 103 IIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRLAARNAI-EAGFDGVEIHGA 181 (367)
Q Consensus 103 ~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~-~aGfdgVei~~~ 181 (367)
++++-....|..-...+. .|......-..|..+ ..| .+-.-..+..++.+.-.++..+|. ++|+.+|+|..
T Consensus 564 pV~iRtlD~~~dk~~~~~-ggdk~~~~E~NP~LG-~RG-----ir~~l~~~~~~lf~~qlraI~ral~d~G~~~~~Im~- 635 (782)
T TIGR01418 564 PVIVRTSDFKSNEYRNLI-GGEEYEPDEENPMLG-WRG-----ASRYYSESYEEAFRLECRAIKRVREEMGLTNVEVMI- 635 (782)
T ss_pred eEEEEcCCCCccchhhhh-CCCccCCCCCCcccc-cch-----hhhhcccccHHHHHHHHHHHHHHHHhcCCCCeEEEe-
Confidence 788888876532111110 111111001112111 111 122222233556777788888887 78999988876
Q ss_pred cchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhC---Cc--ceEEEeCCCccccccCCCChHHHHHHHHHH
Q 017733 182 NGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIG---AE--RVGMRLSPYAECAEAVDSNPEALGLYMAKA 256 (367)
Q Consensus 182 ~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg---~~--~i~vrls~~~~~~~~~~~~~~~~~~~l~~~ 256 (367)
|+.+...+ +.++++++|..-- .+ .+++=+ + +. .+...++.
T Consensus 636 ----------PmV~s~eE------------~~~~~~~~~~~g~~~~~~~~~vg~mI-----------E-tp-~av~~~d~ 680 (782)
T TIGR01418 636 ----------PFVRTPEE------------GKRALEIMAEEGLRRGKNGLEVYVMC-----------E-VP-SNALLADE 680 (782)
T ss_pred ----------cCCCCHHH------------HHHHHHHHHHhCccccccCcEEEEEE-----------C-cH-HHHHHHHH
Confidence 55543332 3445555554311 11 222211 1 12 24455666
Q ss_pred hhhcCccEEEEecCCccc-c-------------C--CchhhHHHHHHHHHh---cCCcEEEeCCC---CHHHHHHHHHcC
Q 017733 257 LNKFKLLYLHVIEPRMIQ-L-------------T--DKSETQRSLLSMRRA---FEGTFIAAGGY---SRDEGNKAVAAN 314 (367)
Q Consensus 257 L~~~Gvd~i~v~~~~~~~-~-------------~--~~~~~~~~~~~ir~~---~~~pvi~~Ggi---t~~~a~~~L~~G 314 (367)
+.+. +|++.+...+..+ . + ..+.....++.+.+. ..+|+..+|.. +++.+..++..|
T Consensus 681 Ia~~-vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G 759 (782)
T TIGR01418 681 FAKE-FDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEG 759 (782)
T ss_pred HHHh-CCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcC
Confidence 6666 9999874322221 0 0 112233344433333 35787777754 589999999999
Q ss_pred CCcEEcccHHH
Q 017733 315 YTDLVAFGRLF 325 (367)
Q Consensus 315 ~~D~V~~gR~~ 325 (367)
+++++++-..
T Consensus 760 -~~~ls~~~d~ 769 (782)
T TIGR01418 760 -IDSISLNPDA 769 (782)
T ss_pred -CCEEEECcch
Confidence 8999986443
No 447
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.63 E-value=9.3 Score=35.85 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=82.7
Q ss_pred HHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017733 84 KEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFRL 163 (367)
Q Consensus 84 ~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~ 163 (367)
.+.+..+.++++.+|++|-++++ +.--|. .++ .+. +-.+.
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla-~~prG~----------------------------------~~~-~~~----~~ia~ 162 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMA-VTAVGK----------------------------------DMV-RDA----RYFSL 162 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE-EecCCC----------------------------------CcC-chH----HHHHH
Confidence 46788899999999999988876 321110 000 011 25788
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
||+.+.|.|.|.|++... | +-+++|-+.++ .||.|.=.+
T Consensus 163 aaRiaaELGADiVK~~y~---------------------~----------~~f~~vv~a~~-vPVviaGG~--------- 201 (264)
T PRK08227 163 ATRIAAEMGAQIIKTYYV---------------------E----------EGFERITAGCP-VPIVIAGGK--------- 201 (264)
T ss_pred HHHHHHHHcCCEEecCCC---------------------H----------HHHHHHHHcCC-CcEEEeCCC---------
Confidence 999999999999997531 1 22233333442 466653333
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHc
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAA 313 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~ 313 (367)
..+.+++.+.+....+.|..-+.+ .++.++.. .| ...++.+++.+ -++.++++|.+++..
T Consensus 202 k~~~~~~L~~v~~ai~aGa~Gv~~-GRNIfQ~~-~p--~~~~~al~~IV------h~~~s~~eA~~~~~~ 261 (264)
T PRK08227 202 KLPERDALEMCYQAIDEGASGVDM-GRNIFQSE-HP--VAMIKAVHAVV------HENETAKEAYELYLS 261 (264)
T ss_pred CCCHHHHHHHHHHHHHcCCceeee-chhhhccC-CH--HHHHHHHHHHH------hCCCCHHHHHHHHHH
Confidence 113466777777777788776665 45554432 11 23455555543 355578888777654
No 448
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=91.58 E-value=10 Score=35.92 Aligned_cols=138 Identities=8% Similarity=-0.003 Sum_probs=83.0
Q ss_pred CCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017733 81 IWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVND 160 (367)
Q Consensus 81 ~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 160 (367)
...++.++.++++++.++++|..+.+.+.+.|..- ...| +.
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~---------------------------r~~~------------~~ 148 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM---------------------------RDSP------------DY 148 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC---------------------------cCCH------------HH
Confidence 34567889999999999999988887776533100 0011 45
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
+.+.++.+.++|.|.|-|- |..|... +.-+.++++++|+.++..+|.+ ..+.++
T Consensus 149 ~~~~~~~~~~~G~~~i~l~-------------------DT~G~~~---P~~v~~l~~~l~~~~~~~~i~~--H~Hnd~-- 202 (280)
T cd07945 149 VFQLVDFLSDLPIKRIMLP-------------------DTLGILS---PFETYTYISDMVKRYPNLHFDF--HAHNDY-- 202 (280)
T ss_pred HHHHHHHHHHcCCCEEEec-------------------CCCCCCC---HHHHHHHHHHHHhhCCCCeEEE--EeCCCC--
Confidence 6777778888999988763 3344321 3347889999999886435555 332222
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+ ...+..++ ..++|+++++.+-...+...+..+....+..++.
T Consensus 203 ---G--la~AN~la--A~~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L~~ 245 (280)
T cd07945 203 ---D--LAVANVLA--AVKAGIKGLHTTVNGLGERAGNAPLASVIAVLKD 245 (280)
T ss_pred ---C--HHHHHHHH--HHHhCCCEEEEecccccccccCccHHHHHHHHHH
Confidence 1 22122222 2467999999876655543333333334444443
No 449
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=91.50 E-value=7.8 Score=35.02 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.7
Q ss_pred cCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 292 FEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 292 ~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
++.|++..||++|+...++++.-..++|-+..++=..|
T Consensus 153 ~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~ 190 (210)
T PRK01222 153 LAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAP 190 (210)
T ss_pred cCCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCC
Confidence 46799999999999999999863366666666655434
No 450
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=91.38 E-value=0.4 Score=43.67 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=39.4
Q ss_pred HHHHHHhcC--CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHH
Q 017733 285 LLSMRRAFE--GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFE 336 (367)
Q Consensus 285 ~~~ir~~~~--~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~ 336 (367)
+..+|+.++ .+++.+|||+++.+...-+.+ +|++.+||+....+|-...++
T Consensus 153 ~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~r-vd~iVVGR~It~A~dP~~aa~ 205 (218)
T PRK13305 153 LARMKALSDIGLELSITGGITPADLPLFKDIR-VKAFIAGRALAGAANPAQVAA 205 (218)
T ss_pred HHHHHHHhCCCCcEEEeCCcCccccccccccC-CCEEEECCcccCCCCHHHHHH
Confidence 566777653 348899999998887777777 799999999998887654443
No 451
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.38 E-value=1 Score=43.62 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHHHhhhcCc--cEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-CHHHHHHHHHcCCCcEEccc
Q 017733 251 LYMAKALNKFKL--LYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-SRDEGNKAVAANYTDLVAFG 322 (367)
Q Consensus 251 ~~l~~~L~~~Gv--d~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~g 322 (367)
.+-+..|.++|+ |+|.+..... . .....+.++.||+.++.+.+..|.+ |++++..+++.| +|+|.+|
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~g---h-~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG-ad~i~vg 168 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHG---H-SDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG-ADATKVG 168 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC---c-hHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC-cCEEEEC
Confidence 456667778855 9988743321 1 1224467889999997444444556 999999999999 9997644
No 452
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.38 E-value=10 Score=35.50 Aligned_cols=131 Identities=14% Similarity=0.017 Sum_probs=77.9
Q ss_pred HHHHHhC----CCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 166 RNAIEAG----FDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 166 ~~a~~aG----fdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+++.++| +|.|.+..+- |+..++ -+++-+.++-.+.+.++++.+|+.- +.|.+++.+
T Consensus 76 ~~a~~~~~~~~~~~i~i~~~~--------s~~~~~--~~~~~~~~~~~~~~~~~i~~a~~~G----~~v~~~~~~----- 136 (268)
T cd07940 76 DAAAEALKPAKVDRIHTFIAT--------SDIHLK--YKLKKTREEVLERAVEAVEYAKSHG----LDVEFSAED----- 136 (268)
T ss_pred HHHHHhCCCCCCCEEEEEecC--------CHHHHH--HHhCCCHHHHHHHHHHHHHHHHHcC----CeEEEeeec-----
Confidence 4455566 9999987643 222111 1234455555666677777777653 234455421
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC---CcEEEeCCC-----CHHHHHHHHHc
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE---GTFIAAGGY-----SRDEGNKAVAA 313 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~---~pvi~~Ggi-----t~~~a~~~L~~ 313 (367)
....+.+....+++.+.+.|++.|.+.... + ...+......++.+++.++ +|+ ..... ....+..+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~-G-~~~P~~v~~lv~~l~~~~~~~~i~l-~~H~Hn~~GlA~An~laAi~a 213 (268)
T cd07940 137 ATRTDLDFLIEVVEAAIEAGATTINIPDTV-G-YLTPEEFGELIKKLKENVPNIKVPI-SVHCHNDLGLAVANSLAAVEA 213 (268)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCC-C-CCCHHHHHHHHHHHHHhCCCCceeE-EEEecCCcchHHHHHHHHHHh
Confidence 112357778899999999999988874321 1 1122234467788999886 443 33333 34567888999
Q ss_pred CCCcEE
Q 017733 314 NYTDLV 319 (367)
Q Consensus 314 G~~D~V 319 (367)
| +|.|
T Consensus 214 G-~~~i 218 (268)
T cd07940 214 G-ARQV 218 (268)
T ss_pred C-CCEE
Confidence 8 6654
No 453
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=91.33 E-value=5.5 Score=38.24 Aligned_cols=149 Identities=18% Similarity=0.083 Sum_probs=78.7
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcc-ccccC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAE-CAEAV 242 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~-~~~~~ 242 (367)
.++++++.|.|+|++-.-+ |.|+=----+.+..|+.+|.+.+++.-= +..+-+-.++. ..+..
T Consensus 110 S~~rike~GadavK~Llyy--------------~pD~~~~in~~k~a~vervg~eC~a~di--pf~lE~ltY~~~~~d~~ 173 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYY--------------DVDEPDEINEQKKAYIERIGSECVAEDI--PFFLEILTYDEKIADNG 173 (324)
T ss_pred hHHHHHHhCCCeEEEEEEE--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCC--CeEEEEeeccCcccccc
Confidence 5788899999999987643 3442111112334566666666666522 33443332211 10000
Q ss_pred CC----ChHHHHHHHHHHhh--hcCccEEEEecCCcc---ccCCch----hhHHH---HHHHHHhcCCc-EEEeCCCCHH
Q 017733 243 DS----NPEALGLYMAKALN--KFKLLYLHVIEPRMI---QLTDKS----ETQRS---LLSMRRAFEGT-FIAAGGYSRD 305 (367)
Q Consensus 243 ~~----~~~~~~~~l~~~L~--~~Gvd~i~v~~~~~~---~~~~~~----~~~~~---~~~ir~~~~~p-vi~~Ggit~~ 305 (367)
.. .-++.....++.+. ..|||.+-|-.|--. ...... ..... .+...+..++| |+.+.|.+.+
T Consensus 174 ~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~~~ 253 (324)
T PRK12399 174 SVEYAKVKPHKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVSAE 253 (324)
T ss_pred cHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCCHH
Confidence 00 01233445566664 478998877433210 000000 11122 33344446788 8889999766
Q ss_pred HHH----HHHHcCCC--cEEcccHHHHhCC
Q 017733 306 EGN----KAVAANYT--DLVAFGRLFLANP 329 (367)
Q Consensus 306 ~a~----~~L~~G~~--D~V~~gR~~ladP 329 (367)
.+. -+.++| + ..|..||+.=+|+
T Consensus 254 ~F~~~l~~A~~aG-a~fsGvL~GRAtW~~~ 282 (324)
T PRK12399 254 LFQETLVFAHEAG-AKFNGVLCGRATWAGS 282 (324)
T ss_pred HHHHHHHHHHHcC-CCcceEEeehhhhHhh
Confidence 554 444566 5 6999999987765
No 454
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=91.32 E-value=6 Score=36.78 Aligned_cols=139 Identities=18% Similarity=0.093 Sum_probs=81.7
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
.|+|.++.|.|+|++-.- -|.|+= ---+.|..++.+|...+++.-= +..+.+-.++.- .
T Consensus 116 sa~riK~~G~~avK~Lvy--------------~~~D~~-e~neqk~a~ierigsec~aedi--~f~lE~ltyd~~----~ 174 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVY--------------YRSDED-EINEQKLAYIERIGSECHAEDL--PFFLEPLTYDPR----I 174 (306)
T ss_pred CHHHHHHhcccceEEEEE--------------EcCCch-HHhHHHHHHHHHHHHHhhhcCC--ceeEeeeecCCC----C
Confidence 588999999999998653 356642 1234566666666666655421 334433221110 1
Q ss_pred CChHHH-------HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHH---HHHhcCCc-EEEeCCCC----HHHHH
Q 017733 244 SNPEAL-------GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLS---MRRAFEGT-FIAAGGYS----RDEGN 308 (367)
Q Consensus 244 ~~~~~~-------~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~---ir~~~~~p-vi~~Ggit----~~~a~ 308 (367)
.++.+. ..+-++.+-+-|+|.+-+-.+-+.. .+....+.. .-.+++.| ++.+.|.+ ++..+
T Consensus 175 ~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPvyve----Ge~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~ 250 (306)
T COG3684 175 GDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPVYVE----GEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVR 250 (306)
T ss_pred CChHHHHhhchHHHHHHHHHhccCCCceEEeecceecc----CccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHH
Confidence 122111 1234555666699988876554321 123344443 44456788 88888885 34556
Q ss_pred HHHHcCCCcEEcccHHHHhC
Q 017733 309 KAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 309 ~~L~~G~~D~V~~gR~~lad 328 (367)
-+.++| +..|..||+.-++
T Consensus 251 fA~eaG-AsGvL~GRAtWa~ 269 (306)
T COG3684 251 FAMEAG-ASGVLAGRATWAG 269 (306)
T ss_pred HHHHcC-CceeEechhhhhc
Confidence 677888 7999999998664
No 455
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=91.27 E-value=4.5 Score=37.75 Aligned_cols=119 Identities=23% Similarity=0.194 Sum_probs=77.2
Q ss_pred CCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017733 82 WTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDF 161 (367)
Q Consensus 82 ~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f 161 (367)
.+.++++.+.++++.+|++|-++++-..--|.. +..+ +....+.+
T Consensus 124 ~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~----------------------------------~~~~-~~~d~~~v 168 (265)
T COG1830 124 TEREMIENISQVVEDAHELGMPLVAWAYPRGPA----------------------------------IKDE-YHRDADLV 168 (265)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEEEeccCCc----------------------------------cccc-ccccHHHH
Confidence 456789999999999999997777544321110 0000 22334678
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+.||+.+.+.|.|.|+.+-. |+ .|..+.+-+.+| -+|.+.=.+.
T Consensus 169 ~~aaRlaaelGADIiK~~yt---------------------g~--------~e~F~~vv~~~~-vpVviaGG~k------ 212 (265)
T COG1830 169 GYAARLAAELGADIIKTKYT---------------------GD--------PESFRRVVAACG-VPVVIAGGPK------ 212 (265)
T ss_pred HHHHHHHHHhcCCeEeecCC---------------------CC--------hHHHHHHHHhCC-CCEEEeCCCC------
Confidence 99999999999999997532 22 155666666776 5676644442
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccc
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ 274 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~ 274 (367)
.++.+++.+.+..+-++|..-+.+ .++..+
T Consensus 213 --~~~~~~~l~~~~~ai~aGa~G~~~-GRNifQ 242 (265)
T COG1830 213 --TETEREFLEMVTAAIEAGAMGVAV-GRNIFQ 242 (265)
T ss_pred --CCChHHHHHHHHHHHHccCcchhh-hhhhhc
Confidence 235677888888888888665543 444433
No 456
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.23 E-value=3.6 Score=43.07 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCc
Q 017733 157 IVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYA 236 (367)
Q Consensus 157 ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~ 236 (367)
+++.|++ +|.++|.|.|.|..+. |. .+-+.+.++.+|+. |.. +.+-++-.
T Consensus 92 vv~~~v~---~a~~~Gvd~irif~~l------------nd------------~~n~~~~i~~ak~~-G~~-v~~~i~~t- 141 (582)
T TIGR01108 92 VVERFVK---KAVENGMDVFRIFDAL------------ND------------PRNLQAAIQAAKKH-GAH-AQGTISYT- 141 (582)
T ss_pred hHHHHHH---HHHHCCCCEEEEEEec------------Cc------------HHHHHHHHHHHHHc-CCE-EEEEEEec-
Confidence 3444444 4567899999987543 11 13355666666665 322 21112210
Q ss_pred cccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeC----CCCHHHHHHHHH
Q 017733 237 ECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAG----GYSRDEGNKAVA 312 (367)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G----git~~~a~~~L~ 312 (367)
..+ ..+.+...++++.+.+.|+|.|.+..-.- ..........++.+|+.+++||-.=. |+.......+++
T Consensus 142 -~~p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G--~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAve 215 (582)
T TIGR01108 142 -TSP---VHTLETYLDLAEELLEMGVDSICIKDMAG--ILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIE 215 (582)
T ss_pred -cCC---CCCHHHHHHHHHHHHHcCCCEEEECCCCC--CcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHH
Confidence 010 13567888999999999999998753211 11122244567889998887753321 223567788999
Q ss_pred cCCCcEE
Q 017733 313 ANYTDLV 319 (367)
Q Consensus 313 ~G~~D~V 319 (367)
+| +|.|
T Consensus 216 aG-a~~v 221 (582)
T TIGR01108 216 AG-ADGI 221 (582)
T ss_pred hC-CCEE
Confidence 99 7766
No 457
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=91.17 E-value=1.7 Score=39.50 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=47.3
Q ss_pred CC-chhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCC-ccc---c-ccCCCChHHHHHHHHHHhhhcCccEEEEecC
Q 017733 202 GG-SLENRCRFALEVVEAVVREIGAE--RVGMRLSPY-AEC---A-EAVDSNPEALGLYMAKALNKFKLLYLHVIEP 270 (367)
Q Consensus 202 Gg-s~enr~r~~~eii~aiR~~vg~~--~i~vrls~~-~~~---~-~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~ 270 (367)
|| |+|.-.-+...+++.+|+..|.. +..+=.|++ .+. . ...|+++.+.....++.|++.|+|+|-+.--
T Consensus 8 GGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~N 84 (230)
T COG1794 8 GGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTN 84 (230)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 55 88888999999999999999865 222222331 111 1 1234556666778899999999999987543
No 458
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=91.16 E-value=7.4 Score=34.98 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=73.2
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
-|+-|.++|.-||.+++ .+=|++||+.+.-..|++==. ++.+..-
T Consensus 38 mA~Aa~~gGAvgiR~~g--------------------------------v~dIkai~~~v~vPIIGIiKr---d~~~s~v 82 (229)
T COG3010 38 MALAAEQGGAVGIRIEG--------------------------------VEDIKAIRAVVDVPIIGIIKR---DYPDSPV 82 (229)
T ss_pred HHHHHHhCCcceEeecc--------------------------------hhhHHHHHhhCCCCeEEEEec---CCCCCCc
Confidence 34445689999999763 455788999984224554111 1221100
Q ss_pred CChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEccc-
Q 017733 244 SNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFG- 322 (367)
Q Consensus 244 ~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~g- 322 (367)
. +..+.+=.+.|.+.|++.|.+..-....+.+ ....+++. .+.+.-++..--=|.+++.-+.+.| +|+|+-.
T Consensus 83 ~--ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~--~~~~~i~~--~k~~~~l~MAD~St~ee~l~a~~~G-~D~IGTTL 155 (229)
T COG3010 83 R--ITPTLKEVDALAEAGADIIAFDATDRPRPDG--DLEELIAR--IKYPGQLAMADCSTFEEGLNAHKLG-FDIIGTTL 155 (229)
T ss_pred e--ecccHHHHHHHHHCCCcEEEeecccCCCCcc--hHHHHHHH--hhcCCcEEEeccCCHHHHHHHHHcC-CcEEeccc
Confidence 1 1113344567788999988774332222111 12233333 1223334443333899999999999 9999864
Q ss_pred ------HHHHhCCch--HHHHHh
Q 017733 323 ------RLFLANPDL--PKRFEL 337 (367)
Q Consensus 323 ------R~~ladP~l--~~k~~~ 337 (367)
+....+||| ++++.+
T Consensus 156 sGYT~~~~~~~~pDf~lvk~l~~ 178 (229)
T COG3010 156 SGYTGYTEKPTEPDFQLVKQLSD 178 (229)
T ss_pred ccccCCCCCCCCCcHHHHHHHHh
Confidence 335567764 555554
No 459
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=91.14 E-value=5.6 Score=37.42 Aligned_cols=142 Identities=18% Similarity=0.124 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
...+++.++|.+.|.|-.+. |+ -+..+.+|-+.++-.+.+.+.++.+|+. |- .|.+++. .+.+ +
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~--------sd--~~~~~~~~~~~~~~~~~~~~~i~~ak~~-G~---~v~~~~~-~~~d-~ 145 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKS--------WD--LHVTEALGTTLEENLAMIRDSVAYLKSH-GR---EVIFDAE-HFFD-G 145 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcC--------CH--HHHHHHcCCCHHHHHHHHHHHHHHHHHc-CC---eEEEeEE-eccc-c
Confidence 34556778999999875432 11 1234555666666666777777777775 32 2333432 2211 1
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-----CHHHHHHHHHcCCC
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-----SRDEGNKAVAANYT 316 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-----t~~~a~~~L~~G~~ 316 (367)
...+.+...++++.+.+.|++.|.+.... + ...+.......+.+++.++ +++ ..... ....+..+++.| +
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~i~l~DT~-G-~~~P~~v~~lv~~l~~~~~~~~l-~~H~Hnd~Gla~An~laA~~aG-a 221 (273)
T cd07941 146 YKANPEYALATLKAAAEAGADWLVLCDTN-G-GTLPHEIAEIVKEVRERLPGVPL-GIHAHNDSGLAVANSLAAVEAG-A 221 (273)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecCC-C-CCCHHHHHHHHHHHHHhCCCCee-EEEecCCCCcHHHHHHHHHHcC-C
Confidence 12246777889999999999988764321 1 1112234466788888887 453 43433 357778899998 6
Q ss_pred cEE-----cccHH
Q 017733 317 DLV-----AFGRL 324 (367)
Q Consensus 317 D~V-----~~gR~ 324 (367)
|.| ++|+.
T Consensus 222 ~~id~s~~GlGer 234 (273)
T cd07941 222 TQVQGTINGYGER 234 (273)
T ss_pred CEEEEeccccccc
Confidence 654 56654
No 460
>PRK15452 putative protease; Provisional
Probab=91.09 E-value=5.8 Score=40.10 Aligned_cols=128 Identities=12% Similarity=-0.044 Sum_probs=73.2
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
.++++-|.++|+|+|.+-. +.+|.|.....-+.+ -+.+.++-+++. | ..|-+-++...
T Consensus 13 ~e~l~aAi~~GADaVY~G~-----------~~~~~R~~~~~f~~e----dl~eav~~ah~~-g-~kvyvt~n~i~----- 70 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQ-----------PRYSLRVRNNEFNHE----NLALGINEAHAL-G-KKFYVVVNIAP----- 70 (443)
T ss_pred HHHHHHHHHCCCCEEEECC-----------CccchhhhccCCCHH----HHHHHHHHHHHc-C-CEEEEEecCcC-----
Confidence 4566677899999999743 224444421111221 244444444442 2 24555555321
Q ss_pred CCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCC---CHHHHHHHHHcCCCc
Q 017733 242 VDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGY---SRDEGNKAVAANYTD 317 (367)
Q Consensus 242 ~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi---t~~~a~~~L~~G~~D 317 (367)
.....+......+.+.+.|+|.+-+.. ...+..+++.. +.+|.+.-.. +...++-+.+.| ++
T Consensus 71 -~e~el~~~~~~l~~l~~~gvDgvIV~d------------~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG-~~ 136 (443)
T PRK15452 71 -HNAKLKTFIRDLEPVIAMKPDALIMSD------------PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMG-LT 136 (443)
T ss_pred -CHHHHHHHHHHHHHHHhCCCCEEEEcC------------HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCC-Cc
Confidence 122345566677788899999887752 34455566654 4567666543 466666666666 67
Q ss_pred EEcccHHH
Q 017733 318 LVAFGRLF 325 (367)
Q Consensus 318 ~V~~gR~~ 325 (367)
-|.++|-+
T Consensus 137 rvvLSrEL 144 (443)
T PRK15452 137 RVILSREL 144 (443)
T ss_pred EEEECCcC
Confidence 77777765
No 461
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=91.08 E-value=0.92 Score=46.27 Aligned_cols=66 Identities=14% Similarity=0.008 Sum_probs=49.4
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEc
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGYSRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 320 (367)
..+.++.|.+.|+|.|.+..... .+ ....+.++.||+.+ ++|||++...|.+.++++++.| +|.|-
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g---~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G-~d~i~ 292 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHG---HQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAG-ANIIK 292 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCC---Cc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhC-CCEEE
Confidence 45688889999999987743321 11 23456788899886 5788884455999999999999 89976
No 462
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.99 E-value=3.7 Score=40.34 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=76.7
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~ 244 (367)
.+++.++|.|.|.|..+. |+. +....++-+.+.-.+.+.+.++.+|+. | +.|.++..+ . ..
T Consensus 77 i~~a~~~g~~~i~i~~~~--------Sd~--~~~~~~~~~~~~~~~~~~~~i~~ak~~-G---~~v~~~~ed-a----~r 137 (363)
T TIGR02090 77 IDKAIDCGVDSIHTFIAT--------SPI--HLKYKLKKSRDEVLEKAVEAVEYAKEH-G---LIVEFSAED-A----TR 137 (363)
T ss_pred HHHHHHcCcCEEEEEEcC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-C---CEEEEEEee-c----CC
Confidence 556778999999986653 121 222334444444445555666655554 2 234455421 1 12
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-----CHHHHHHHHHcCCCcEE
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-----SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t~~~a~~~L~~G~~D~V 319 (367)
.+.+...++++.+.+.|+|.|.+.... + ...+......++.+++.+++||- .... ....+..+++.| +|.|
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~DT~-G-~~~P~~v~~li~~l~~~~~~~l~-~H~Hnd~GlA~AN~laA~~aG-a~~v 213 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINIADTV-G-VLTPQKMEELIKKLKENVKLPIS-VHCHNDFGLATANSIAGVKAG-AEQV 213 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCC-C-ccCHHHHHHHHHHHhcccCceEE-EEecCCCChHHHHHHHHHHCC-CCEE
Confidence 356778899999999999998875431 1 11112234567778877775532 2222 356678888888 6644
No 463
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.85 E-value=8.9 Score=35.81 Aligned_cols=74 Identities=20% Similarity=0.156 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC---CHH----HHHHHHHcCCCcEE
Q 017733 247 EALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY---SRD----EGNKAVAANYTDLV 319 (367)
Q Consensus 247 ~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi---t~~----~a~~~L~~G~~D~V 319 (367)
.+.....++.-.+.|.|+|-+- ++ ...+..+.+-+...+||+..||= +.+ ...+++++| +-.+
T Consensus 165 ~~~v~~aaRlaaelGADIiK~~-------yt--g~~e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aG-a~G~ 234 (265)
T COG1830 165 ADLVGYAARLAAELGADIIKTK-------YT--GDPESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAG-AMGV 234 (265)
T ss_pred HHHHHHHHHHHHHhcCCeEeec-------CC--CChHHHHHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHcc-Ccch
Confidence 3444455555678899988752 11 12244555666677998888875 333 346788898 8899
Q ss_pred cccHHHHhCCc
Q 017733 320 AFGRLFLANPD 330 (367)
Q Consensus 320 ~~gR~~ladP~ 330 (367)
.+||=.+..|+
T Consensus 235 ~~GRNifQ~~~ 245 (265)
T COG1830 235 AVGRNIFQHED 245 (265)
T ss_pred hhhhhhhccCC
Confidence 99999888765
No 464
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=90.75 E-value=6.4 Score=39.40 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeC
Q 017733 154 IPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLS 233 (367)
Q Consensus 154 I~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls 233 (367)
+........+....++++|.|.|.+..+. ...+++..++.+.+.-...+.+.++..|+.- +-++.+
T Consensus 71 ~~~~~~~~~~~~ea~~~a~~~~i~if~~t----------Sd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g----~~~~~~ 136 (409)
T COG0119 71 IAALARAIKRDIEALLEAGVDRIHIFIAT----------SDLHLRYKLKKTREEVLERAVDAVEYARDHG----LEVRFS 136 (409)
T ss_pred hhhhHHhHHhhHHHHHhCCCCEEEEEEcC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC----CeEEEE
Confidence 33444455556677788999998876544 3456777777777766777777777777653 566666
Q ss_pred CCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcC-CcEEEeCCC-C----HHHH
Q 017733 234 PYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFE-GTFIAAGGY-S----RDEG 307 (367)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi-t----~~~a 307 (367)
+.+ .. ..+.+...++++.+.++|++.|.+..-. + ...+....+..+.+++.++ ...+..... + ....
T Consensus 137 ~Ed-~~----rt~~~~l~~~~~~~~~~ga~~i~l~DTv-G-~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANs 209 (409)
T COG0119 137 AED-AT----RTDPEFLAEVVKAAIEAGADRINLPDTV-G-VATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANS 209 (409)
T ss_pred eec-cc----cCCHHHHHHHHHHHHHcCCcEEEECCCc-C-ccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHH
Confidence 643 21 3356778889999888899999874321 1 1112234467788888887 233333333 2 4566
Q ss_pred HHHHHcCCCcEE
Q 017733 308 NKAVAANYTDLV 319 (367)
Q Consensus 308 ~~~L~~G~~D~V 319 (367)
..++++| +|.|
T Consensus 210 laAv~aG-a~~v 220 (409)
T COG0119 210 LAAVEAG-ADQV 220 (409)
T ss_pred HHHHHcC-CcEE
Confidence 7888888 6755
No 465
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=90.72 E-value=3.6 Score=40.14 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcc
Q 017733 282 QRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 282 ~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
++.++.+++.+++||++-|-.++++++.+.+.| +|.|.+
T Consensus 202 ~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~v 240 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG-VDGIVL 240 (344)
T ss_pred HHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcC-CCEEEE
Confidence 456788999999999988666899999999998 888775
No 466
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.71 E-value=8.6 Score=38.97 Aligned_cols=157 Identities=11% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHH-hhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC
Q 017733 147 RPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLID-QFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA 225 (367)
Q Consensus 147 ~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~-qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~ 225 (367)
..|+.+|.-.|++ ...++||+.||+.+|.++--+ .|+++. ..|.++.+|+.++.
T Consensus 21 ~~~~t~dkl~ia~-------~Ld~~Gv~~IE~~ggatf~~~~~f~~e~------------------p~e~l~~l~~~~~~ 75 (448)
T PRK12331 21 TRMTTEEMLPILE-------KLDNAGYHSLEMWGGATFDACLRFLNED------------------PWERLRKIRKAVKK 75 (448)
T ss_pred cccCHHHHHHHHH-------HHHHcCCCEEEecCCccchhhhccCCCC------------------HHHHHHHHHHhCCC
Confidence 4577776665554 445679999999766544322 666553 47889999988754
Q ss_pred cceE--EEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcE----EEe
Q 017733 226 ERVG--MRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTF----IAA 299 (367)
Q Consensus 226 ~~i~--vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pv----i~~ 299 (367)
..+. .|..--..+. ..+.+-...+++...+.|+|.+++....-.. ......++.+|+. ...+ ...
T Consensus 76 ~~l~~l~r~~N~~G~~----~~pddvv~~~v~~A~~~Gvd~irif~~lnd~----~n~~~~v~~ak~~-G~~v~~~i~~t 146 (448)
T PRK12331 76 TKLQMLLRGQNLLGYR----NYADDVVESFVQKSVENGIDIIRIFDALNDV----RNLETAVKATKKA-GGHAQVAISYT 146 (448)
T ss_pred CEEEEEeccccccccc----cCchhhHHHHHHHHHHCCCCEEEEEEecCcH----HHHHHHHHHHHHc-CCeEEEEEEee
Confidence 3433 4421100110 1122223456777778899999886431110 1112234444443 2221 122
Q ss_pred CC-C-CH----HHHHHHHHcC-----CCcEEcccHHHHhCCchHHHHHhC
Q 017733 300 GG-Y-SR----DEGNKAVAAN-----YTDLVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 300 Gg-i-t~----~~a~~~L~~G-----~~D~V~~gR~~ladP~l~~k~~~g 338 (367)
.+ . ++ +.++++.+.| .+|.++++.|.-.. ++++.+++.
T Consensus 147 ~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~-~lv~alk~~ 195 (448)
T PRK12331 147 TSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAY-ELVKRIKEA 195 (448)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHH-HHHHHHHHh
Confidence 21 2 33 4577888887 23455555554443 566666653
No 467
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=90.66 E-value=2.4 Score=38.28 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=27.8
Q ss_pred CcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHH
Q 017733 294 GTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFL 326 (367)
Q Consensus 294 ~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~l 326 (367)
++++-+||+++..+.++++.| +..|++|..+.
T Consensus 154 v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l~ 185 (211)
T COG0800 154 VRFCPTGGVSLDNAADYLAAG-VVAVGLGSWLV 185 (211)
T ss_pred CeEeecCCCCHHHHHHHHhCC-ceEEecCcccc
Confidence 458999999999999999999 88999776554
No 468
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=90.65 E-value=2.4 Score=39.84 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCcc-eEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAER-VGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~~-i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
+.+.|+..|+.+|..+ |-|-. ++.+++. +..++|+|.|-+.+-+. .......+.++.
T Consensus 174 i~~Av~~aR~~~~~~~kIEVEv------------esle~~~----eAl~agaDiImLDNm~~------e~~~~av~~l~~ 231 (280)
T COG0157 174 ITEAVRRARAAAPFTKKIEVEV------------ESLEEAE----EALEAGADIIMLDNMSP------EELKEAVKLLGL 231 (280)
T ss_pred HHHHHHHHHHhCCCCceEEEEc------------CCHHHHH----HHHHcCCCEEEecCCCH------HHHHHHHHHhcc
Confidence 4567777888777532 44422 1344433 23467999887653311 111122222211
Q ss_pred hcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCCc
Q 017733 291 AFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANPD 330 (367)
Q Consensus 291 ~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP~ 330 (367)
.-+..+=++||+|++....+...| +|++++|.....-|.
T Consensus 232 ~~~~~lEaSGgIt~~ni~~yA~tG-VD~IS~galths~~~ 270 (280)
T COG0157 232 AGRALLEASGGITLENIREYAETG-VDVISVGALTHSAPA 270 (280)
T ss_pred CCceEEEEeCCCCHHHHHHHhhcC-CCEEEeCccccCCcc
Confidence 112346688999999999999999 999999988777663
No 469
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.63 E-value=8.2 Score=36.06 Aligned_cols=131 Identities=12% Similarity=0.069 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
.++-|+...++|+++|-+. .-.+-|||+ .+.|++||+.+. -||..| +|.
T Consensus 72 ~~~~A~~~~~~GA~aisvl----------------te~~~f~g~--------~~~l~~v~~~v~-iPvl~k-----dfi- 120 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVL----------------TDERFFQGS--------LEYLRAARAAVS-LPVLRK-----DFI- 120 (260)
T ss_pred HHHHHHHHHhCCCeEEEEe----------------cccccCCCC--------HHHHHHHHHhcC-CCEEee-----eec-
Confidence 3666777788999999653 455677888 577888999874 365531 221
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEc
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVA 320 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~ 320 (367)
-++ . -+.....+|+|.+++...... ......+++..++ +...+++ .-.+.++++.+++.| +|+|+
T Consensus 121 ---~~~---~--qi~~a~~~GAD~VlLi~~~l~----~~~l~~li~~a~~-lGl~~lv-evh~~~E~~~A~~~g-adiIg 185 (260)
T PRK00278 121 ---IDP---Y--QIYEARAAGADAILLIVAALD----DEQLKELLDYAHS-LGLDVLV-EVHDEEELERALKLG-APLIG 185 (260)
T ss_pred ---CCH---H--HHHHHHHcCCCEEEEEeccCC----HHHHHHHHHHHHH-cCCeEEE-EeCCHHHHHHHHHcC-CCEEE
Confidence 111 1 345566789999998755321 1112223333333 3433322 334788888899888 99999
Q ss_pred ccH----HHHhCCchHHHHHh
Q 017733 321 FGR----LFLANPDLPKRFEL 337 (367)
Q Consensus 321 ~gR----~~ladP~l~~k~~~ 337 (367)
+.- -+--|++...++..
T Consensus 186 in~rdl~~~~~d~~~~~~l~~ 206 (260)
T PRK00278 186 INNRNLKTFEVDLETTERLAP 206 (260)
T ss_pred ECCCCcccccCCHHHHHHHHH
Confidence 763 22223444555544
No 470
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=90.63 E-value=18 Score=35.51 Aligned_cols=105 Identities=13% Similarity=0.022 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEec-CC--ccccCCchhhHHHHHHHH
Q 017733 213 LEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIE-PR--MIQLTDKSETQRSLLSMR 289 (367)
Q Consensus 213 ~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~-~~--~~~~~~~~~~~~~~~~ir 289 (367)
.++++++.+. | .||.++-.. ..+.+++...++.+.+.|..=|-+.. +. |..+.....+...+..+|
T Consensus 215 ~~LL~~~a~~-g-kPVilk~G~---------~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk 283 (360)
T PRK12595 215 FELLKAAGRV-N-KPVLLKRGL---------SATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILK 283 (360)
T ss_pred HHHHHHHHcc-C-CcEEEeCCC---------CCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHH
Confidence 3556655543 2 378876654 23577788888888888864344444 32 221112223567788899
Q ss_pred HhcCCcEEEeCCC--C-----HHHHHHHHHcCCCcEEcccHHHHhCCch
Q 017733 290 RAFEGTFIAAGGY--S-----RDEGNKAVAANYTDLVAFGRLFLANPDL 331 (367)
Q Consensus 290 ~~~~~pvi~~Ggi--t-----~~~a~~~L~~G~~D~V~~gR~~ladP~l 331 (367)
+.+..||+..... . +..+..+++.| +|.+.+=+-+ ||+.
T Consensus 284 ~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~G-Adg~~iE~H~--dp~~ 329 (360)
T PRK12595 284 QETHLPVMVDVTHSTGRRDLLLPTAKAALAIG-ADGVMAEVHP--DPAV 329 (360)
T ss_pred HHhCCCEEEeCCCCCcchhhHHHHHHHHHHcC-CCeEEEEecC--CCCC
Confidence 9889998884333 1 33567788898 9988887766 7764
No 471
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.57 E-value=7.3 Score=36.17 Aligned_cols=138 Identities=17% Similarity=0.264 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcc-
Q 017733 149 LSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAER- 227 (367)
Q Consensus 149 mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~- 227 (367)
-|.+|++.+.++ ++.++++|+|||-+= +|.+ +.+-| .+.++.+.+..++-+
T Consensus 67 Ys~~E~~~M~~d----i~~~~~~GadGvV~G---------~L~~--dg~vD-------------~~~~~~Li~~a~~~~v 118 (248)
T PRK11572 67 YSDGEFAAMLED----IATVRELGFPGLVTG---------VLDV--DGHVD-------------MPRMRKIMAAAGPLAV 118 (248)
T ss_pred CCHHHHHHHHHH----HHHHHHcCCCEEEEe---------eECC--CCCcC-------------HHHHHHHHHHhcCCce
Confidence 366787776665 566688999999852 2322 22223 445555555555432
Q ss_pred eEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCC-cEEEeCCCCHHH
Q 017733 228 VGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEG-TFIAAGGYSRDE 306 (367)
Q Consensus 228 i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~-pvi~~Ggit~~~ 306 (367)
.+-| +++.. .++ .+-.+.|.+.|++-|=.|.+... -......++.+.+.... .|+.+||++++.
T Consensus 119 TFHR--AfD~~-----~d~----~~al~~l~~lG~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~Im~GgGV~~~N 183 (248)
T PRK11572 119 TFHR--AFDMC-----ANP----LNALKQLADLGVARILTSGQQQD----AEQGLSLIMELIAASDGPIIMAGAGVRLSN 183 (248)
T ss_pred EEec--hhhcc-----CCH----HHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhcCCCEEEeCCCCCHHH
Confidence 2222 22111 122 23456677789998765543211 11223445555444333 388888999999
Q ss_pred HHHHHHcCCCcEEcccHHHHhCC
Q 017733 307 GNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 307 a~~~L~~G~~D~V~~gR~~ladP 329 (367)
+.++++.|.-.+=+-++....+|
T Consensus 184 v~~l~~tG~~~~H~s~~~~~~~~ 206 (248)
T PRK11572 184 LHKFLDAGVREVHSSAGQWVPSP 206 (248)
T ss_pred HHHHHHcCCCEEeeCCCcccCCC
Confidence 99988887444444444433333
No 472
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=90.54 E-value=7.5 Score=35.72 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+++.+.+..++..++|.||+-.-+ +. ++ --..+++.++|+.....++.+-++...+.
T Consensus 14 ~~~~e~~~~~~~~~~Di~E~RvD~------------------l~----~~-~~~~~~~~~~~e~~~~~~~IfT~R~~~EG 70 (231)
T COG0710 14 AELKEQAEKSKELDADIVELRVDL------------------LE----SN-VEVLEVAKALREKDPDKPLIFTFRTVKEG 70 (231)
T ss_pred HHHHHHHHHhhccCCCEEEEeech------------------hc----cc-chHHHHHHHHHHhccCCceEEEEeehhhc
Confidence 456677888889999999986543 11 11 23678889999998766555544432111
Q ss_pred cccCCCChHHHHHHHHHHhhhc-CccEEEEe
Q 017733 239 AEAVDSNPEALGLYMAKALNKF-KLLYLHVI 268 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~-Gvd~i~v~ 268 (367)
..+..+.++..++.+.+.+. ++||+++.
T Consensus 71 --G~~~~~~~~~i~ll~~la~~~~~d~iDiE 99 (231)
T COG0710 71 --GEFPGSEEEYIELLKKLAELNGPDYIDIE 99 (231)
T ss_pred --CCCCCCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 11233566677777777765 59999884
No 473
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.40 E-value=16 Score=34.41 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+.+.+.++.+.++|.|.|-|. |..|... +.-+.++++++|++++ .+|++ ..++++
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~-~~l~~--H~Hnd~ 203 (275)
T cd07937 149 EYYVKLAKELEDMGADSICIK-------------------DMAGLLT---PYAAYELVKALKKEVG-LPIHL--HTHDTS 203 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEc-------------------CCCCCCC---HHHHHHHHHHHHHhCC-CeEEE--EecCCC
Confidence 456777888889999998863 4555432 5567999999999986 45554 332222
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHH
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMR 289 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir 289 (367)
+ ...+..++ ..++|+++++.+-.......+..+....+..++
T Consensus 204 -----G--lA~aN~la--A~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~ 245 (275)
T cd07937 204 -----G--LAVATYLA--AAEAGVDIVDTAISPLSGGTSQPSTESMVAALR 245 (275)
T ss_pred -----C--hHHHHHHH--HHHhCCCEEEEecccccCCcCChhHHHHHHHHH
Confidence 1 12122222 235799999987665544333333333333343
No 474
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.29 E-value=16 Score=34.68 Aligned_cols=125 Identities=17% Similarity=0.108 Sum_probs=77.0
Q ss_pred cCCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 017733 80 GIWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVN 159 (367)
Q Consensus 80 ~~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~ 159 (367)
+...++.++.++++++.++++|..+.+-+...- + .|- .+ ... .+
T Consensus 112 ~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~--~------------~~~--------~~--~~~------------~~ 155 (287)
T PRK05692 112 NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVL--G------------CPY--------EG--EVP------------PE 155 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEe--c------------CCC--------CC--CCC------------HH
Confidence 345567788999999999999987776664320 0 000 00 011 15
Q ss_pred HHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccc
Q 017733 160 DFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECA 239 (367)
Q Consensus 160 ~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~ 239 (367)
.+.+.++.+.++|.|.|-|-=.- |.. -+.-+.++++++|+++++.+|.+-..- ++
T Consensus 156 ~~~~~~~~~~~~G~d~i~l~DT~-------------------G~~---~P~~v~~lv~~l~~~~~~~~i~~H~Hn--~~- 210 (287)
T PRK05692 156 AVADVAERLFALGCYEISLGDTI-------------------GVG---TPGQVRAVLEAVLAEFPAERLAGHFHD--TY- 210 (287)
T ss_pred HHHHHHHHHHHcCCcEEEecccc-------------------Ccc---CHHHHHHHHHHHHHhCCCCeEEEEecC--CC-
Confidence 67888888899999988874333 322 134468899999999874456653332 22
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCcc
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI 273 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~ 273 (367)
+.... ..++ ..++|+++++.+-...+
T Consensus 211 ----Gla~A--N~la--A~~aG~~~id~s~~GlG 236 (287)
T PRK05692 211 ----GQALA--NIYA--SLEEGITVFDASVGGLG 236 (287)
T ss_pred ----CcHHH--HHHH--HHHhCCCEEEEEccccC
Confidence 11222 2222 23679999998866554
No 475
>PRK12999 pyruvate carboxylase; Reviewed
Probab=90.20 E-value=7.2 Score=44.22 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=78.2
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccc-cccC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAEC-AEAV 242 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~-~~~~ 242 (367)
.+.+.++|.|.+.|..+. |..+-+...++++|+. |.. .+.+-... +. +...
T Consensus 633 i~~a~~~Gid~~rifd~l------------------------nd~~~~~~~i~~vk~~-g~~~~~~i~ytg--~~~d~~~ 685 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSL------------------------NWVENMRVAIDAVRET-GKIAEAAICYTG--DILDPAR 685 (1146)
T ss_pred HHHHHHcCCCEEEEeccC------------------------ChHHHHHHHHHHHHHc-CCeEEEEEEEEe--cCCCCCC
Confidence 445567899999986432 1234467788888887 532 23332221 11 1111
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCC----CCHHHHHHHHHcCCCcE
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGG----YSRDEGNKAVAANYTDL 318 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg----it~~~a~~~L~~G~~D~ 318 (367)
...+.+.+.++++.+++.|+|.|.+..-. ...........++.+|+.+++||-.=+- +....+..+++.| +|.
T Consensus 686 ~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~--G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aG-ad~ 762 (1146)
T PRK12999 686 AKYDLDYYVDLAKELEKAGAHILAIKDMA--GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAG-VDI 762 (1146)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCcc--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhC-CCE
Confidence 12357788899999999999998875321 1111223446778899998877544322 2356778899999 887
Q ss_pred Ecc
Q 017733 319 VAF 321 (367)
Q Consensus 319 V~~ 321 (367)
|-.
T Consensus 763 vD~ 765 (1146)
T PRK12999 763 VDV 765 (1146)
T ss_pred EEe
Confidence 743
No 476
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=90.13 E-value=0.94 Score=42.95 Aligned_cols=99 Identities=14% Similarity=-0.010 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCCcceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc
Q 017733 213 LEVVEAVVREIGAERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF 292 (367)
Q Consensus 213 ~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~ 292 (367)
-+=|+.+|+.+. -||.+|=-. +.|++. ...++|++-|-||+...-+...-+...+.+.++-+++
T Consensus 212 W~Di~wLr~~T~-LPIvvKGil-----------t~eDA~----~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV 275 (363)
T KOG0538|consen 212 WKDIKWLRSITK-LPIVVKGVL-----------TGEDAR----KAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAV 275 (363)
T ss_pred hhhhHHHHhcCc-CCeEEEeec-----------ccHHHH----HHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHh
Confidence 344666676652 366665432 123332 2356899999887654333334445566677777776
Q ss_pred --CCcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhC
Q 017733 293 --EGTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLAN 328 (367)
Q Consensus 293 --~~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~lad 328 (367)
++||..-||+ +-.+.-++|+-| +-.|.+|||.+.-
T Consensus 276 ~~ri~V~lDGGVR~G~DVlKALALG-Ak~VfiGRP~v~g 313 (363)
T KOG0538|consen 276 EGRIPVFLDGGVRRGTDVLKALALG-AKGVFIGRPIVWG 313 (363)
T ss_pred cCceEEEEecCcccchHHHHHHhcc-cceEEecCchhee
Confidence 4789999999 788999999999 9999999998864
No 477
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=90.12 E-value=19 Score=37.04 Aligned_cols=159 Identities=12% Similarity=0.156 Sum_probs=86.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEecccchHHH-hhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCC
Q 017733 147 RPLSIEEIPKIVNDFRLAARNAIEAGFDGVEIHGANGYLID-QFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGA 225 (367)
Q Consensus 147 ~~mt~~eI~~ii~~f~~aA~~a~~aGfdgVei~~~~gyLl~-qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~ 225 (367)
..|+.+|+-. .|..+-++||+.||+.+|.-+--+ .|++ .| ..|.++++|+.++.
T Consensus 22 tr~~t~d~l~-------ia~~ld~~G~~siE~~GGatfd~~~rfl~------Ed------------pwerlr~lr~~~~n 76 (499)
T PRK12330 22 TRMAMEDMVG-------ACEDIDNAGYWSVECWGGATFDACIRFLN------ED------------PWERLRTFRKLMPN 76 (499)
T ss_pred ccCCHHHHHH-------HHHHHHhcCCCEEEecCCcchhhhhcccC------CC------------HHHHHHHHHHhCCC
Confidence 4577766655 445555699999998644432221 2321 11 37889999999975
Q ss_pred cceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhh-HHHHHHHHHhcCCc---EEEe-C
Q 017733 226 ERVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSET-QRSLLSMRRAFEGT---FIAA-G 300 (367)
Q Consensus 226 ~~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~-~~~~~~ir~~~~~p---vi~~-G 300 (367)
..+..=++.. ...+.. ..+.+-...+++...+.|+|.+++..+. ....+ ...++.+++.-... |.-+ +
T Consensus 77 t~lqmL~Rg~-N~vGy~-~y~ddvv~~fv~~a~~~Gidi~RIfd~l-----ndv~nl~~ai~~vk~ag~~~~~~i~yt~s 149 (499)
T PRK12330 77 SRLQMLLRGQ-NLLGYR-HYEDEVVDRFVEKSAENGMDVFRVFDAL-----NDPRNLEHAMKAVKKVGKHAQGTICYTVS 149 (499)
T ss_pred CeEEEEEccc-ccCCcc-CcchhHHHHHHHHHHHcCCCEEEEEecC-----ChHHHHHHHHHHHHHhCCeEEEEEEEecC
Confidence 5554433321 011111 1122234457777788999999986442 11112 23455666654322 2222 2
Q ss_pred CC-CHH----HHHHHHHcC-----CCcEEcccHHHHhCCchHHHHHhC
Q 017733 301 GY-SRD----EGNKAVAAN-----YTDLVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 301 gi-t~~----~a~~~L~~G-----~~D~V~~gR~~ladP~l~~k~~~g 338 (367)
.. |++ .++++.+.| .+|.+++..|.-+. +++..+++.
T Consensus 150 p~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~-~LV~~Lk~~ 196 (499)
T PRK12330 150 PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAY-DIVKGIKEA 196 (499)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHH-HHHHHHHHh
Confidence 23 654 467788887 23455555555443 566777654
No 478
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=90.07 E-value=6.6 Score=37.81 Aligned_cols=147 Identities=18% Similarity=0.104 Sum_probs=78.3
Q ss_pred HHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCC
Q 017733 164 AARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVD 243 (367)
Q Consensus 164 aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~ 243 (367)
.++++++.|.|+|++-.-+ |.|+=----+.+..|+.+|.+.+++.-= +..+-+-.++.-. .+
T Consensus 112 s~~rike~GadavK~Llyy--------------~pD~~~ein~~k~a~vervg~eC~a~di--pf~lE~l~Yd~~~--~d 173 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYY--------------DVDGDEEINDQKQAYIERIGSECTAEDI--PFFLELLTYDERI--SD 173 (329)
T ss_pred hHHHHHHhCCCeEEEEEEE--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCC--CeEEEEeccCCcc--cc
Confidence 6788899999999987643 3442111112334566666666666421 4444443321100 00
Q ss_pred CChH-------HHHHHHHHHhhh--cCccEEEEecCC---ccccCCch----hhHHHHHHH---HHhcCCc-EEEeCCCC
Q 017733 244 SNPE-------ALGLYMAKALNK--FKLLYLHVIEPR---MIQLTDKS----ETQRSLLSM---RRAFEGT-FIAAGGYS 303 (367)
Q Consensus 244 ~~~~-------~~~~~l~~~L~~--~Gvd~i~v~~~~---~~~~~~~~----~~~~~~~~i---r~~~~~p-vi~~Ggit 303 (367)
..+. +.....++.+.+ .|||.+-|-.|- +-...... ......+.+ .+..++| |+.+.|.+
T Consensus 174 ~~~~eyak~kP~~V~~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~ 253 (329)
T PRK04161 174 NNSAAYAKLKPHKVNGAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVS 253 (329)
T ss_pred cccHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhcccCCCEEEEcCCCC
Confidence 1111 223345566653 689988774332 10000110 112233334 4445788 88899997
Q ss_pred HHHHHH----HHHcCCCc--EEcccHHHHhCC
Q 017733 304 RDEGNK----AVAANYTD--LVAFGRLFLANP 329 (367)
Q Consensus 304 ~~~a~~----~L~~G~~D--~V~~gR~~ladP 329 (367)
.+.+.+ +.+.| +. .|..||+.=+|+
T Consensus 254 ~~~F~~~l~~A~~aG-a~fnGvL~GRAtW~~~ 284 (329)
T PRK04161 254 AKLFQETLVFAAEAG-AQFNGVLCGRATWAGS 284 (329)
T ss_pred HHHHHHHHHHHHhcC-CCcccEEeehhhhhhh
Confidence 665544 34466 66 999999988776
No 479
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=90.07 E-value=12 Score=37.44 Aligned_cols=75 Identities=11% Similarity=-0.064 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccC---------Cch-hhHHHHHHHHHhcCCcEEEe--CCC-CHHH-HHHHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLT---------DKS-ETQRSLLSMRRAFEGTFIAA--GGY-SRDE-GNKAV 311 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~---------~~~-~~~~~~~~ir~~~~~pvi~~--Ggi-t~~~-a~~~L 311 (367)
..+++.++++.+++.|+|+|++--+...... ..+ ...+.++.+++.+++||++= -.+ +..+ ++.+.
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAK 190 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHH
Confidence 3577888999999999999987432211010 111 12345677888888887643 233 3334 44455
Q ss_pred HcCCCcEEcc
Q 017733 312 AANYTDLVAF 321 (367)
Q Consensus 312 ~~G~~D~V~~ 321 (367)
+.| +|.|.+
T Consensus 191 ~~G-adgi~~ 199 (420)
T PRK08318 191 RGG-ADAVSL 199 (420)
T ss_pred HCC-CCEEEE
Confidence 555 998884
No 480
>PRK02227 hypothetical protein; Provisional
Probab=90.04 E-value=14 Score=34.05 Aligned_cols=127 Identities=16% Similarity=0.077 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc-ceEEEeCCCccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE-RVGMRLSPYAECAE 240 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~-~i~vrls~~~~~~~ 240 (367)
.+-|+.|.++|.|.|++. |.....-|.. ...+|++|++.++.. ++.--+.- +.
T Consensus 10 ~eEA~~Al~~GaDiIDvK---------------~P~~GaLGA~-------~p~vir~Iv~~~~~~~pvSAtiGD---~p- 63 (238)
T PRK02227 10 LEEALEALAGGADIIDVK---------------NPKEGSLGAN-------FPWVIREIVAAVPGRKPVSATIGD---VP- 63 (238)
T ss_pred HHHHHHHHhcCCCEEEcc---------------CCCCCCCCCC-------CHHHHHHHHHHhCCCCCceeeccC---CC-
Confidence 455788899999999984 4444455542 367888888888764 66554431 11
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHH----HHHHHhc-CCcEEEeCC--------CCHHHH
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSL----LSMRRAF-EGTFIAAGG--------YSRDEG 307 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~----~~ir~~~-~~pvi~~Gg--------it~~~a 307 (367)
..+ .+...-+..+...|+||+-+-..... ........+ +.++... +..|++++= +.+.+.
T Consensus 64 ---~~p-~~~~~aa~~~a~~GvDyVKvGl~~~~---~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l 136 (238)
T PRK02227 64 ---YKP-GTISLAALGAAATGADYVKVGLYGGK---TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSL 136 (238)
T ss_pred ---CCc-hHHHHHHHHHHhhCCCEEEEcCCCCC---cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHH
Confidence 112 33334445566789999987432111 111112222 2333333 244665541 234454
Q ss_pred HHHH-HcCCCcEEccc
Q 017733 308 NKAV-AANYTDLVAFG 322 (367)
Q Consensus 308 ~~~L-~~G~~D~V~~g 322 (367)
-+.+ +.| +|.+|+-
T Consensus 137 ~~~a~~aG-f~g~MlD 151 (238)
T PRK02227 137 PAIAADAG-FDGAMLD 151 (238)
T ss_pred HHHHHHcC-CCEEEEe
Confidence 4444 455 9999984
No 481
>PLN00191 enolase
Probab=90.01 E-value=1.7 Score=44.13 Aligned_cols=68 Identities=6% Similarity=0.084 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhhh-cCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHcCCCcEEcc
Q 017733 246 PEALGLYMAKALNK-FKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY--SRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 246 ~~~~~~~l~~~L~~-~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi--t~~~a~~~L~~G~~D~V~~ 321 (367)
+.+++.++.+.|.+ .++.||+ +|. ........+.+++..++||++...+ +++++.++++.+.+|.|.+
T Consensus 296 s~~e~i~~~~~L~~~y~I~~IE--DPl------~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~i 366 (457)
T PLN00191 296 SGDELIDLYKEFVSDYPIVSIE--DPF------DQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLL 366 (457)
T ss_pred CHHHHHHHHHHHhhcCCcEEEE--CCC------CcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEe
Confidence 56777778777655 7777776 431 1223455667888888888887765 5999999999999998865
No 482
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=90.00 E-value=3.9 Score=38.82 Aligned_cols=153 Identities=16% Similarity=0.066 Sum_probs=81.2
Q ss_pred HHHHHHHHHh---------CCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEe
Q 017733 162 RLAARNAIEA---------GFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRL 232 (367)
Q Consensus 162 ~~aA~~a~~a---------GfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrl 232 (367)
+-+|+.+.++ ||++|-+.+ ++ ++. +.-..|.=--+++. .++.++.|..++. -||.+.+
T Consensus 19 ~~SA~~~e~~~~~~~~~~~Gf~ai~~ss-~~--~a~-----s~G~pD~~~~~~~e----~~~~~~~I~~a~~-~Pv~~D~ 85 (285)
T TIGR02320 19 GLSALIAEEARVEVGGESLGFDGIWSSS-LT--DST-----SRGVPDIEEASWTQ----RLDVVEFMFDVTT-KPIILDG 85 (285)
T ss_pred HHHHHHHHHhhhcccCcCCCcCEEEech-HH--HHH-----HCCCCCcCcCCHHH----HHHHHHHHHhhcC-CCEEEec
Confidence 5678888899 999999754 22 221 11223310012222 2334555555542 3776644
Q ss_pred CCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccc----cCCc-----hhhHHHHH---HHHHh-cC--CcEE
Q 017733 233 SPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQ----LTDK-----SETQRSLL---SMRRA-FE--GTFI 297 (367)
Q Consensus 233 s~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~----~~~~-----~~~~~~~~---~ir~~-~~--~pvi 297 (367)
-. + + ..+...+.++.+.++|+.-|++-...... .... ........ .++++ .+ .+|+
T Consensus 86 d~-------G-g-~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~Ii 156 (285)
T TIGR02320 86 DT-------G-G-NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMII 156 (285)
T ss_pred CC-------C-C-CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEE
Confidence 32 2 2 45667788999999999999984432111 0000 11123333 33333 22 3444
Q ss_pred Ee-----C--CC--CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhC
Q 017733 298 AA-----G--GY--SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFELN 338 (367)
Q Consensus 298 ~~-----G--gi--t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g 338 (367)
+- . ++ ..+-++.+.+.| +|+|.+= +...+++-+.++.+.
T Consensus 157 ARTDa~~~~~~~~eAi~Ra~ay~eAG-AD~ifv~-~~~~~~~ei~~~~~~ 204 (285)
T TIGR02320 157 ARVESLILGKGMEDALKRAEAYAEAG-ADGIMIH-SRKKDPDEILEFARR 204 (285)
T ss_pred EecccccccCCHHHHHHHHHHHHHcC-CCEEEec-CCCCCHHHHHHHHHH
Confidence 43 1 12 234578888998 9999984 224566655555543
No 483
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=89.96 E-value=2.6 Score=39.99 Aligned_cols=101 Identities=11% Similarity=0.041 Sum_probs=62.8
Q ss_pred eCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCc----h-h---hHHHHHHHHHhcCCcEEEeCCCC
Q 017733 232 LSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDK----S-E---TQRSLLSMRRAFEGTFIAAGGYS 303 (367)
Q Consensus 232 ls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~----~-~---~~~~~~~ir~~~~~pvi~~Ggit 303 (367)
++|+. |.+.+...+.+.+.+-+..+.+.|+|.|+|....- .+... . . ....++.+++.+++| +..--+.
T Consensus 23 vTpDS-Fsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeST-rPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~-ISIDT~~ 99 (282)
T PRK11613 23 VTPDS-FSDGGTHNSLIDAVKHANLMINAGATIIDVGGEST-RPGAAEVSVEEELDRVIPVVEAIAQRFEVW-ISVDTSK 99 (282)
T ss_pred CCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEECCC
Confidence 45643 43333334577788889999999999999843211 11111 1 1 112345566655555 4556668
Q ss_pred HHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 304 RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 304 ~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
++.++.+|+.| +|+|==-.++ .||+....+++
T Consensus 100 ~~va~~AL~~G-adiINDI~g~-~d~~~~~~~a~ 131 (282)
T PRK11613 100 PEVIRESAKAG-AHIINDIRSL-SEPGALEAAAE 131 (282)
T ss_pred HHHHHHHHHcC-CCEEEECCCC-CCHHHHHHHHH
Confidence 99999999998 9998322333 48887766655
No 484
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=89.74 E-value=3.9 Score=39.16 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCc-ceEEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHH
Q 017733 212 ALEVVEAVVREIGAE-RVGMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRR 290 (367)
Q Consensus 212 ~~eii~aiR~~vg~~-~i~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~ 290 (367)
..+.+++.|+..+.. ++.|-..-. ++...++.+.++.+ ..++|.|-+.... ...+. ....++.+++
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevdt~--------~~~v~eal~~~~~~-~~~~d~I~lDn~~--~~~G~--~~~~~~~~~~ 236 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALIDTF--------NDEKEEALKAAKAL-GDKLDGVRLDTPS--SRRGV--FRYLIREVRW 236 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEeec--------CcchHHHHHHHHHh-CCCCcEEEECCCC--CCCCC--HHHHHHHHHH
Confidence 467788888888743 555544321 11234455555442 2257777664321 00111 2233444444
Q ss_pred hc------CCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHHHhCC
Q 017733 291 AF------EGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLFLANP 329 (367)
Q Consensus 291 ~~------~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ladP 329 (367)
.+ ++.+.++||++++.+.++.+.| +|++++|.-+..-|
T Consensus 237 ~l~~~g~~~~~ieaSGgI~~~~i~~~a~~g-vD~isvGs~~~~~~ 280 (302)
T cd01571 237 ALDIRGYKHVKIFVSGGLDEEDIKELEDVG-VDAFGVGTAISKAP 280 (302)
T ss_pred HHHhCCCCCeEEEEeCCCCHHHHHHHHHcC-CCEEECCcccCCCC
Confidence 43 2458999999999999999999 99999999887655
No 485
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.68 E-value=13 Score=34.96 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017733 81 IWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVND 160 (367)
Q Consensus 81 ~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 160 (367)
...++.++.++++++.++++|..+.++..+. + ++ + ...+ +.
T Consensus 112 ~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~-------~--d~-----~-------------~~~~------------~~ 152 (273)
T cd07941 112 TTLEENLAMIRDSVAYLKSHGREVIFDAEHF-------F--DG-----Y-------------KANP------------EY 152 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec-------c--cc-----C-------------CCCH------------HH
Confidence 3456778899999999999998776655432 0 00 0 0011 34
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
+.+.++.+.++|.|.|-|- |..|.. .+.-+.++++++|+.+++.+|++-..- ++
T Consensus 153 ~~~~~~~~~~~g~~~i~l~-------------------DT~G~~---~P~~v~~lv~~l~~~~~~~~l~~H~Hn--d~-- 206 (273)
T cd07941 153 ALATLKAAAEAGADWLVLC-------------------DTNGGT---LPHEIAEIVKEVRERLPGVPLGIHAHN--DS-- 206 (273)
T ss_pred HHHHHHHHHhCCCCEEEEe-------------------cCCCCC---CHHHHHHHHHHHHHhCCCCeeEEEecC--CC--
Confidence 5667777788999988763 344432 245578899999999864356653332 22
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchh
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSE 280 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~ 280 (367)
+... +..++ ..++|+++++.+-...+...+..+
T Consensus 207 ---Gla~--An~la--A~~aGa~~id~s~~GlGeraGn~~ 239 (273)
T cd07941 207 ---GLAV--ANSLA--AVEAGATQVQGTINGYGERCGNAN 239 (273)
T ss_pred ---CcHH--HHHHH--HHHcCCCEEEEecccccccccccc
Confidence 1112 22222 125799999987665554444433
No 486
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=89.67 E-value=6.8 Score=40.54 Aligned_cols=134 Identities=16% Similarity=0.032 Sum_probs=82.1
Q ss_pred HHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCCC
Q 017733 166 RNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDSN 245 (367)
Q Consensus 166 ~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~~ 245 (367)
+.+.++|.+.|.|..+. |+ -++.+.++-+.+.-.+.+.+.++.+|+... -|.+++...++. ...
T Consensus 92 e~~~~~g~~~i~i~~~~--------Sd--~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~----~v~~~~e~~~Da--~r~ 155 (524)
T PRK12344 92 QALLDAGTPVVTIFGKS--------WD--LHVTEALRTTLEENLAMIRDSVAYLKAHGR----EVIFDAEHFFDG--YKA 155 (524)
T ss_pred HHHHhCCCCEEEEEECC--------CH--HHHHHHcCCCHHHHHHHHHHHHHHHHHcCC----eEEEcccccccc--ccC
Confidence 44577899998886543 12 245566676766667777777777777532 345565321111 123
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCC-----CHHHHHHHHHcCCCcEE
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGY-----SRDEGNKAVAANYTDLV 319 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggi-----t~~~a~~~L~~G~~D~V 319 (367)
+.+...++++.+.+.|++.|.+..-. + ...+......++.+++.+++||- .... ....+..+++.| +|.|
T Consensus 156 d~~~l~~~~~~~~~~Gad~i~l~DTv-G-~~~P~~v~~li~~l~~~~~v~i~-~H~HND~GlA~ANslaAi~aG-a~~V 230 (524)
T PRK12344 156 NPEYALATLKAAAEAGADWVVLCDTN-G-GTLPHEVAEIVAEVRAAPGVPLG-IHAHNDSGCAVANSLAAVEAG-ARQV 230 (524)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEccCC-C-CcCHHHHHHHHHHHHHhcCCeEE-EEECCCCChHHHHHHHHHHhC-CCEE
Confidence 46778899999999999998864321 1 11122234567788888866543 3322 356678888888 6654
No 487
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=89.50 E-value=11 Score=36.99 Aligned_cols=117 Identities=18% Similarity=0.056 Sum_probs=72.1
Q ss_pred CCCHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017733 81 IWTKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVND 160 (367)
Q Consensus 81 ~~~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~ 160 (367)
...++.++...+.++.++++|..+.+.+..++|. .+ +.
T Consensus 105 ~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~------------------------------~~------------~~ 142 (363)
T TIGR02090 105 KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRT------------------------------DI------------DF 142 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCC------------------------------CH------------HH
Confidence 3445677888899999999998877666443221 11 45
Q ss_pred HHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccc
Q 017733 161 FRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAE 240 (367)
Q Consensus 161 f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~ 240 (367)
+.+.++.+.++|.|.|-|- |..|... +.-+.++++.+|+.++ .+|++ ....++
T Consensus 143 l~~~~~~~~~~g~~~i~l~-------------------DT~G~~~---P~~v~~li~~l~~~~~-~~l~~--H~Hnd~-- 195 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIA-------------------DTVGVLT---PQKMEELIKKLKENVK-LPISV--HCHNDF-- 195 (363)
T ss_pred HHHHHHHHHhCCCCEEEEe-------------------CCCCccC---HHHHHHHHHHHhcccC-ceEEE--EecCCC--
Confidence 5667777888999988763 4445433 3346888888888875 34444 433222
Q ss_pred cCCCChHHHHHHHHHHhhhcCccEEEEecCCcc
Q 017733 241 AVDSNPEALGLYMAKALNKFKLLYLHVIEPRMI 273 (367)
Q Consensus 241 ~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~ 273 (367)
+ ...+..++ ..++|+++++.+-....
T Consensus 196 ---G--lA~AN~la--A~~aGa~~vd~s~~GlG 221 (363)
T TIGR02090 196 ---G--LATANSIA--GVKAGAEQVHVTVNGIG 221 (363)
T ss_pred ---C--hHHHHHHH--HHHCCCCEEEEEeeccc
Confidence 1 22222232 22569999988755443
No 488
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=89.44 E-value=13 Score=34.74 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCC--CchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYG--GSLENRCRFALEVVEAVVREIGAERVGMRLSPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yG--gs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~ 236 (367)
++....|+..+++|.+.+.-- - +..||--|. |--+ -.+++++++++..|- ++..++--..
T Consensus 59 E~i~~~A~~vk~~Ga~~lRGg--a-----------fKPRTSPYsFQGlge----~gL~~l~~a~~~~Gl-~vvtEvm~~~ 120 (286)
T COG2876 59 EQVRETAESVKAAGAKALRGG--A-----------FKPRTSPYSFQGLGE----EGLKLLKRAADETGL-PVVTEVMDVR 120 (286)
T ss_pred HHHHHHHHHHHHcchhhccCC--c-----------CCCCCCcccccccCH----HHHHHHHHHHHHcCC-eeEEEecCHH
Confidence 355778889999999988732 1 457777776 3222 236677777777763 3333331101
Q ss_pred c------ccc----------------------------cCCCChHHHHHHHHHHhhhcCccEEEEecCC---ccccCCch
Q 017733 237 E------CAE----------------------------AVDSNPEALGLYMAKALNKFKLLYLHVIEPR---MIQLTDKS 279 (367)
Q Consensus 237 ~------~~~----------------------------~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~---~~~~~~~~ 279 (367)
+ +.| .+...++++++.-++.+...|-.-+-+.++. +......-
T Consensus 121 ~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRnt 200 (286)
T COG2876 121 DVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNT 200 (286)
T ss_pred HHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccce
Confidence 0 000 0234578888888888888885555555543 22211122
Q ss_pred hhHHHHHHHHHhcCCcEEEeCCC-----C--HHHHHHHHHcCCCcEEcc
Q 017733 280 ETQRSLLSMRRAFEGTFIAAGGY-----S--RDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 280 ~~~~~~~~ir~~~~~pvi~~Ggi-----t--~~~a~~~L~~G~~D~V~~ 321 (367)
-+....-.+|+.+..|||+.-.. + .-.|..+++.| +|.+++
T Consensus 201 LDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaG-Adglmi 248 (286)
T COG2876 201 LDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAG-ADGLMI 248 (286)
T ss_pred echHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhcc-CCeeEE
Confidence 23456778999999999976433 2 34578899999 999987
No 489
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=89.41 E-value=2.6 Score=39.40 Aligned_cols=98 Identities=22% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ce--------
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RV-------- 228 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i-------- 228 (367)
+....|.+..+|+|.|+|+|-++. -..++|+++-++-=|- .|
T Consensus 95 ~av~nA~rl~ke~GadaVKlEGg~----------------------------~~~~~i~~l~~~GIPV~gHiGLtPQ~~~ 146 (261)
T PF02548_consen 95 QAVRNAGRLMKEAGADAVKLEGGA----------------------------EIAETIKALVDAGIPVMGHIGLTPQSVH 146 (261)
T ss_dssp HHHHHHHHHHHTTT-SEEEEEBSG----------------------------GGHHHHHHHHHTT--EEEEEES-GGGHH
T ss_pred HHHHHHHHHHHhcCCCEEEeccch----------------------------hHHHHHHHHHHCCCcEEEEecCchhhee
Q ss_pred ---EEEeCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCC
Q 017733 229 ---GMRLSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGG 301 (367)
Q Consensus 229 ---~vrls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Gg 301 (367)
++|.-. ...+.....++-++.|+++|+-.+.+..- -...++.|.+.+++|+|+.|.
T Consensus 147 ~~GGyr~qG-------k~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p~~la~~It~~l~IPtIGIGa 205 (261)
T PF02548_consen 147 QLGGYRVQG-------KTAEEAEKLLEDAKALEEAGAFAIVLECV----------PAELAKAITEALSIPTIGIGA 205 (261)
T ss_dssp HHTSS--CS-------TSHHHHHHHHHHHHHHHHHT-SEEEEESB----------BHHHHHHHHHHSSS-EEEESS
T ss_pred ccCCceEEe-------cCHHHHHHHHHHHHHHHHcCccEEeeecC----------HHHHHHHHHHhCCCCEEecCC
No 490
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=89.30 E-value=3 Score=38.92 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=65.4
Q ss_pred eCCCccccccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCC----ch-h---hHHHHHHHHHhcCCcEEEeCCCC
Q 017733 232 LSPYAECAEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTD----KS-E---TQRSLLSMRRAFEGTFIAAGGYS 303 (367)
Q Consensus 232 ls~~~~~~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~----~~-~---~~~~~~~ir~~~~~pvi~~Ggit 303 (367)
++|+. |.+.+...+.+.+.+.++.+.+.|+++|.+.... ..+.. .. . ....++.+++.++.|| ..--.+
T Consensus 8 ~tpdS-F~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~s-t~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pl-siDT~~ 84 (257)
T TIGR01496 8 VTPDS-FSDGGRFLSVDKAVAHAERMLEEGADIIDVGGES-TRPGADRVSPEEELNRVVPVIKALRDQPDVPI-SVDTYR 84 (257)
T ss_pred CCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE-EEeCCC
Confidence 45543 3333333456788999999999999999994211 11111 11 1 1223455666667664 555668
Q ss_pred HHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 304 RDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 304 ~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
++.++.+|+.| +|+|--..+.- ++++..-+++
T Consensus 85 ~~vi~~al~~G-~~iINsis~~~-~~~~~~l~~~ 116 (257)
T TIGR01496 85 AEVARAALEAG-ADIINDVSGGQ-DPAMLEVAAE 116 (257)
T ss_pred HHHHHHHHHcC-CCEEEECCCCC-CchhHHHHHH
Confidence 99999999998 89998887764 7777766665
No 491
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=89.30 E-value=19 Score=33.77 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=88.4
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCcccccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEA 241 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~ 241 (367)
+-.|+.+.++|||+|-+ +.. +....+. ..|.-.-+ +.-.+..+++|++.++..+|.+.+ ++ .
T Consensus 25 ~~sArl~e~aG~d~i~v-Gds--~~~~~lG-----~~Dt~~vt----l~em~~h~~~V~r~~~~p~vvaD~-pf---g-- 86 (264)
T PRK00311 25 YPFAKLFDEAGVDVILV-GDS--LGMVVLG-----YDSTLPVT----LDDMIYHTKAVARGAPRALVVADM-PF---G-- 86 (264)
T ss_pred HHHHHHHHHcCCCEEEE-CHH--HHHHHcC-----CCCCCCcC----HHHHHHHHHHHHhcCCCCcEEEeC-CC---C--
Confidence 55788889999999964 211 1111110 11110112 223466667777766532466666 32 1
Q ss_pred CCCChHHHHH-HHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEE-----------EeCCC-----CH
Q 017733 242 VDSNPEALGL-YMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFI-----------AAGGY-----SR 304 (367)
Q Consensus 242 ~~~~~~~~~~-~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi-----------~~Ggi-----t~ 304 (367)
+...+.+++. ...+.++++|++.+++-.+ ......++.+.+ ..+||+ ..|++ |.
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEdg--------~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~ 157 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEGG--------EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDE 157 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcCc--------HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCH
Confidence 1123455543 4455566699999998533 112223333333 257776 33443 32
Q ss_pred -------HHHHHHHHcCCCcEEcccHHHHhCCchHHHHHhCCCC--------CCCCCcccccCCCCCCccc
Q 017733 305 -------DEGNKAVAANYTDLVAFGRLFLANPDLPKRFELNAPL--------NKYNRSTFYIPDPVVGYTD 360 (367)
Q Consensus 305 -------~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~g~~~--------~~~~~~~~~~~~~~~~~~~ 360 (367)
+++..+.+.| ||+|.+ ..+ .+++.+++.+.-++ ..||-..+-. -+-+|+..
T Consensus 158 ~~a~~~i~ra~a~~eAG-A~~i~l--E~v-~~~~~~~i~~~l~iP~igiGaG~~~dgqvlv~-~D~lG~~~ 223 (264)
T PRK00311 158 EAAEKLLEDAKALEEAG-AFALVL--ECV-PAELAKEITEALSIPTIGIGAGPDCDGQVLVW-HDMLGLFS 223 (264)
T ss_pred HHHHHHHHHHHHHHHCC-CCEEEE--cCC-CHHHHHHHHHhCCCCEEEeccCCCCCceeeeH-HhhcCCCC
Confidence 3455566777 898877 333 33677887776432 4566555544 34577744
No 492
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=89.28 E-value=1.1 Score=44.18 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc-EEEeCCCCHHHHHHHHHcCCCcE--EcccHH
Q 017733 248 ALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT-FIAAGGYSRDEGNKAVAANYTDL--VAFGRL 324 (367)
Q Consensus 248 ~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~~a~~~L~~G~~D~--V~~gR~ 324 (367)
|+..+-.+.|.++|+|+|-+....- ....+...++.||+.++.. ||++...|.++++.+|.+| +|. |+||.+
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqG----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aG-aDgLrVGMGsG 324 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQG----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAG-ADGLRVGMGSG 324 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCC----cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHcc-CceeEeccccC
Confidence 3345566778899999987753321 1123567889999999765 6665555999999999999 896 566665
Q ss_pred HHh
Q 017733 325 FLA 327 (367)
Q Consensus 325 ~la 327 (367)
-+.
T Consensus 325 SiC 327 (503)
T KOG2550|consen 325 SIC 327 (503)
T ss_pred cee
Confidence 544
No 493
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=89.27 E-value=16 Score=34.07 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=76.5
Q ss_pred HHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccCCC
Q 017733 165 ARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAVDS 244 (367)
Q Consensus 165 A~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~~~ 244 (367)
.+++.++|.|.|.|-... . ....+.+.++.+|+. |- .+.++... ...
T Consensus 91 i~~a~~~g~~~iri~~~~-----------s-------------~~~~~~~~i~~ak~~-G~---~v~~~~~~-----~~~ 137 (263)
T cd07943 91 LKMAADLGVDVVRVATHC-----------T-------------EADVSEQHIGAARKL-GM---DVVGFLMM-----SHM 137 (263)
T ss_pred HHHHHHcCCCEEEEEech-----------h-------------hHHHHHHHHHHHHHC-CC---eEEEEEEe-----ccC
Confidence 456678899999875432 1 122356666666665 21 22222211 112
Q ss_pred ChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCC-cEEEeCCC-----CHHHHHHHHHcCCCcE
Q 017733 245 NPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEG-TFIAAGGY-----SRDEGNKAVAANYTDL 318 (367)
Q Consensus 245 ~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~-pvi~~Ggi-----t~~~a~~~L~~G~~D~ 318 (367)
.+.+...++++.+.+.|+|.|.+.... + ...+.......+.+|+.++. |+ ..... ....+..+++.| +|.
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~DT~-G-~~~P~~v~~lv~~l~~~~~~~~l-~~H~Hn~~GlA~AN~laAi~aG-a~~ 213 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTDSA-G-AMLPDDVRERVRALREALDPTPV-GFHGHNNLGLAVANSLAAVEAG-ATR 213 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC-C-CcCHHHHHHHHHHHHHhCCCceE-EEEecCCcchHHHHHHHHHHhC-CCE
Confidence 356778899999999999998874321 1 11122345677889998875 43 33433 356678899998 665
Q ss_pred E-----cccHHHHhCCc
Q 017733 319 V-----AFGRLFLANPD 330 (367)
Q Consensus 319 V-----~~gR~~ladP~ 330 (367)
| +||+. ..|+.
T Consensus 214 vd~s~~GlG~~-aGN~~ 229 (263)
T cd07943 214 IDGSLAGLGAG-AGNTP 229 (263)
T ss_pred EEeecccccCC-cCCcc
Confidence 4 66665 44554
No 494
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=89.25 E-value=6.7 Score=35.55 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCc--ceEEEeCCCcccc
Q 017733 162 RLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAE--RVGMRLSPYAECA 239 (367)
Q Consensus 162 ~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~--~i~vrls~~~~~~ 239 (367)
.+..+.+.+.|.+.|++-. +...+ +.. .+..+++|..+... ++.| |-
T Consensus 24 ~~~ve~al~~Gv~~vQlR~-------------------K~~~~-~~~----~~~a~~~~~lc~~~~v~liI--Nd----- 72 (211)
T COG0352 24 LEWVEAALKGGVTAVQLRE-------------------KDLSD-EEY----LALAEKLRALCQKYGVPLII--ND----- 72 (211)
T ss_pred HHHHHHHHhCCCeEEEEec-------------------CCCCh-HHH----HHHHHHHHHHHHHhCCeEEe--cC-----
Confidence 5677788899999999742 11111 111 45555555555432 3443 21
Q ss_pred ccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCc-EEEeCCCCHHHHHHHHHcCCCcE
Q 017733 240 EAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGT-FIAAGGYSRDEGNKAVAANYTDL 318 (367)
Q Consensus 240 ~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~p-vi~~Ggit~~~a~~~L~~G~~D~ 318 (367)
..+ ++. +.++|.+|+..... .....++.+.-. +|+.+-.+.++++++.+.| +|+
T Consensus 73 ------~~d----lA~---~~~AdGVHlGq~D~-----------~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g-~DY 127 (211)
T COG0352 73 ------RVD----LAL---AVGADGVHLGQDDM-----------PLAEARELLGPGLIIGLSTHDLEEALEAEELG-ADY 127 (211)
T ss_pred ------cHH----HHH---hCCCCEEEcCCccc-----------chHHHHHhcCCCCEEEeecCCHHHHHHHHhcC-CCE
Confidence 222 332 57899999753211 133455555433 6666666999999999999 999
Q ss_pred EcccHH
Q 017733 319 VAFGRL 324 (367)
Q Consensus 319 V~~gR~ 324 (367)
|++|.=
T Consensus 128 v~~Gpi 133 (211)
T COG0352 128 VGLGPI 133 (211)
T ss_pred EEECCc
Confidence 999853
No 495
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.10 E-value=12 Score=32.11 Aligned_cols=133 Identities=19% Similarity=0.069 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAEC 238 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~ 238 (367)
+.+.+-++.+.+.|++.|++-... .+.+.+. . ...+.+..+++..+ .++.+-+...+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~-----------~~~~~~~-----~----~~~~~~~~~~~~~~-~~~~~~~~~~~-- 68 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRS-----------SDPEEAE-----T----DDKEVLKEVAAETD-LPLGVQLAIND-- 68 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEE-----------ECcccCC-----C----ccccHHHHHHhhcC-CcEEEEEccCC--
Confidence 455666777778899999875422 1111110 0 00155666666653 35555443211
Q ss_pred cccCCCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCC-C-HHHHHHHHHcCC
Q 017733 239 AEAVDSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGY-S-RDEGNKAVAANY 315 (367)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggi-t-~~~a~~~L~~G~ 315 (367)
..+.....++.+.+.|+|+|+++...... .....+.++.+++.+ +.+++..-.. + .+.+ .+.+.|
T Consensus 69 -------~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-~~~~~g- 136 (200)
T cd04722 69 -------AAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAVPDVKVVVKLSPTGELAAA-AAEEAG- 136 (200)
T ss_pred -------chhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-hHHHcC-
Confidence 11111123567788899999987553211 111345677888887 5665554432 2 2222 245556
Q ss_pred CcEEcccHHHH
Q 017733 316 TDLVAFGRLFL 326 (367)
Q Consensus 316 ~D~V~~gR~~l 326 (367)
+|+|.+.....
T Consensus 137 ~d~i~~~~~~~ 147 (200)
T cd04722 137 VDEVGLGNGGG 147 (200)
T ss_pred CCEEEEcCCcC
Confidence 89998765433
No 496
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.99 E-value=15 Score=33.38 Aligned_cols=111 Identities=19% Similarity=0.102 Sum_probs=69.3
Q ss_pred CHHhhhhhhHHHHHHHHcCCeeEEccccCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017733 83 TKEQVEAWKPIVDAVHQKGGIIFCQIWHAGRVSNYGLQPNGEAPISSTSKGVTPGVDGLDWSPPRPLSIEEIPKIVNDFR 162 (367)
Q Consensus 83 ~~~~~~~~~~l~~~vh~~g~~~~~Ql~h~Gr~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~ 162 (367)
.++..+.++++.+.+|++|.++++...-.|- ..+..++.+ ...
T Consensus 104 ~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~------------------------------~~~~~~~~~-------~i~ 146 (235)
T cd00958 104 EREMLEELARVAAEAHKYGLPLIAWMYPRGP------------------------------AVKNEKDPD-------LIA 146 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeccCC------------------------------cccCccCHH-------HHH
Confidence 3567888999999999999999986522110 001123332 344
Q ss_pred HHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEeCCCccccccC
Q 017733 163 LAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRLSPYAECAEAV 242 (367)
Q Consensus 163 ~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrls~~~~~~~~~ 242 (367)
++++.+.++|.|.|.+.. + + -.+.++++.+.++ .|+. ++.. .
T Consensus 147 ~~~~~a~~~GaD~Ik~~~-------------~--------~--------~~~~~~~i~~~~~-~pvv--~~GG------~ 188 (235)
T cd00958 147 YAARIGAELGADIVKTKY-------------T--------G--------DAESFKEVVEGCP-VPVV--IAGG------P 188 (235)
T ss_pred HHHHHHHHHCCCEEEecC-------------C--------C--------CHHHHHHHHhcCC-CCEE--EeCC------C
Confidence 557888899999999731 0 0 1455666666553 2432 2221 0
Q ss_pred CCChHHHHHHHHHHhhhcCccEEEEe
Q 017733 243 DSNPEALGLYMAKALNKFKLLYLHVI 268 (367)
Q Consensus 243 ~~~~~~~~~~l~~~L~~~Gvd~i~v~ 268 (367)
...+.+++.+.++.+.+.|++.+.+.
T Consensus 189 ~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 189 KKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 12356677788888889999988764
No 497
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=88.97 E-value=2 Score=41.73 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCCcEEcccHHH
Q 017733 246 PEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKAVAANYTDLVAFGRLF 325 (367)
Q Consensus 246 ~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~L~~G~~D~V~~gR~~ 325 (367)
+.+.+.+-+++|+++|++.+-+.-++. .....++.|++.+++|+++---|++.-|.++++.| +|-+=+-=|-
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~~~-------~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G-~~~iRINPGN 111 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVPDM-------EAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAG-ADALRINPGN 111 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccCCH-------HHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhC-CCEEEECCCC
Confidence 355567778889999999998864422 24567888999999999998889999999999999 9988554444
Q ss_pred HhC
Q 017733 326 LAN 328 (367)
Q Consensus 326 lad 328 (367)
+..
T Consensus 112 ig~ 114 (360)
T PRK00366 112 IGK 114 (360)
T ss_pred CCc
Confidence 443
No 498
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.93 E-value=1.8 Score=44.32 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=49.3
Q ss_pred HHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhc-CCcEEEeCCCCHHHHHHHHHcCCCcEEcc
Q 017733 250 GLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAF-EGTFIAAGGYSRDEGNKAVAANYTDLVAF 321 (367)
Q Consensus 250 ~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~-~~pvi~~Ggit~~~a~~~L~~G~~D~V~~ 321 (367)
..+.++.|.++|+|.|-+.... . ........++.+++.+ +.||++.+..|.+++..+++.| +|+|.+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~-g---~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG-ad~i~v 296 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAH-G---HSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG-ADAVKV 296 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCC-C---cchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC-CCEEEE
Confidence 3567778888999988654221 1 1122456788899988 6788886666999999999999 999965
No 499
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=88.79 E-value=3.5 Score=38.31 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHHHhcC--CcEEEeCCC-CHHHHHHHHHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 283 RSLLSMRRAFE--GTFIAAGGY-SRDEGNKAVAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 283 ~~~~~ir~~~~--~pvi~~Ggi-t~~~a~~~L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
.....+.+.++ ..+|.-+|+ |+++.+.+...| +|.+.+|..++..++....+++
T Consensus 195 ~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~g-a~a~LVG~slM~~~~~~~a~~~ 251 (254)
T COG0134 195 ETTEKLAPLIPKDVILISESGISTPEDVRRLAKAG-ADAFLVGEALMRADDPEEALRE 251 (254)
T ss_pred HHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcC-CCEEEecHHHhcCCCHHHHHHH
Confidence 34556666665 346666788 899999999999 9999999999999998666553
No 500
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=88.71 E-value=9.2 Score=35.56 Aligned_cols=134 Identities=19% Similarity=0.158 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecccchHHHhhcCcccccCCCCCCCchhhHhHHHHHHHHHHHHHhCCcceEEEe--CCCc
Q 017733 159 NDFRLAARNAIEAGFDGVEIHGANGYLIDQFMKDQVNDRTDEYGGSLENRCRFALEVVEAVVREIGAERVGMRL--SPYA 236 (367)
Q Consensus 159 ~~f~~aA~~a~~aGfdgVei~~~~gyLl~qFlsp~~N~R~D~yGgs~enr~r~~~eii~aiR~~vg~~~i~vrl--s~~~ 236 (367)
+.+..|++..+++|.|+|++-+|- -+.+.|+.+.++- -||+=-+ .|-.
T Consensus 94 ~a~~nA~r~~ke~gA~aVKlEGG~----------------------------~~~~~i~~L~~~g--IPV~gHiGLtPQ~ 143 (268)
T COG0413 94 QALKNAARLMKEAGADAVKLEGGE----------------------------EMAETIKRLTERG--IPVMGHIGLTPQS 143 (268)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCH----------------------------HHHHHHHHHHHcC--CceEEEecCChhh
Confidence 456666677778999999986542 1244444444432 1333222 2211
Q ss_pred -----cccccC-CCChHHHHHHHHHHhhhcCccEEEEecCCccccCCchhhHHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Q 017733 237 -----ECAEAV-DSNPEALGLYMAKALNKFKLLYLHVIEPRMIQLTDKSETQRSLLSMRRAFEGTFIAAGGYSRDEGNKA 310 (367)
Q Consensus 237 -----~~~~~~-~~~~~~~~~~l~~~L~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~Ggit~~~a~~~ 310 (367)
.|.-.+ ..+..+..++-++.|+++|+-.+.+- . --...++.|.+.+++|+|+-|.=.--|..=+
T Consensus 144 v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE-~---------Vp~~lA~~IT~~lsiPtIGIGAG~~cDGQvL 213 (268)
T COG0413 144 VNWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVLE-C---------VPAELAKEITEKLSIPTIGIGAGPGCDGQVL 213 (268)
T ss_pred hhccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEEe-c---------cHHHHHHHHHhcCCCCEEeecCCCCCCceEE
Confidence 111111 11233444555788999998766542 1 1135788899999999888763111111111
Q ss_pred HHcCCCcEEcccHHHHhCCchHHHHHh
Q 017733 311 VAANYTDLVAFGRLFLANPDLPKRFEL 337 (367)
Q Consensus 311 L~~G~~D~V~~gR~~ladP~l~~k~~~ 337 (367)
+ . -|++++-++ .-|-|+++..+
T Consensus 214 V-~--~D~lGl~~~--~~PkFvK~y~~ 235 (268)
T COG0413 214 V-M--HDMLGLSGG--HKPKFVKRYAD 235 (268)
T ss_pred E-e--eeccccCCC--CCCcHHHHHhc
Confidence 1 1 256666432 44566665553
Done!