Your job contains 1 sequence.
>017735
MKELLTEILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTG
QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSS
VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ
VEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGGYGGGGFAGGGFGGSGGGGGGGG
YRSSGAYGVRGGGYGGYGVGGEFGGYGGYGGGMGAYRGEPSSLGYSGRYGGFNRGYDVTG
DYGGLNESYGGYGGSGVGGGGGYGGGPSGYDIGLGSSYGGSSGGAFFGSRGGYGGAGGSS
RYHPYGR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017735
(367 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 700 8.0e-77 3
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 653 2.6e-67 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 471 8.6e-47 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 242 3.1e-41 3
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 381 2.4e-37 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 369 3.5e-36 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 372 2.8e-34 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 357 1.1e-32 1
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 351 4.7e-32 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 350 1.1e-31 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 351 1.2e-31 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 342 4.2e-31 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 311 1.6e-30 2
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 201 2.0e-30 2
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 306 2.6e-30 2
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 331 6.2e-30 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 330 7.9e-30 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 323 4.4e-29 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 289 1.2e-28 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 317 1.9e-28 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 315 3.1e-28 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 315 3.1e-28 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 315 3.1e-28 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 286 6.6e-28 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 307 2.2e-27 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 307 2.2e-27 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 314 2.4e-27 1
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 304 4.5e-27 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 304 4.5e-27 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 304 4.5e-27 1
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 303 5.7e-27 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 303 5.7e-27 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 303 5.7e-27 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 303 5.7e-27 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 303 5.7e-27 1
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 302 7.3e-27 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 273 7.4e-27 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 277 1.2e-26 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 277 1.2e-26 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 274 1.2e-26 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 299 1.5e-26 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 299 1.5e-26 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 299 1.5e-26 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 299 1.5e-26 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 298 1.9e-26 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 297 2.5e-26 1
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 297 2.5e-26 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 297 2.5e-26 1
DICTYBASE|DDB_G0292422 - symbol:DDB_G0292422 "RNA-binding... 305 2.9e-26 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 296 3.2e-26 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 296 3.2e-26 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 262 8.2e-26 2
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 267 1.0e-25 2
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 291 1.1e-25 1
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 265 1.2e-25 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 267 1.3e-25 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 267 1.3e-25 2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 267 1.3e-25 2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 267 1.3e-25 2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 267 1.7e-25 2
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 264 1.7e-25 2
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 267 2.1e-25 2
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 266 2.7e-25 2
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 266 2.7e-25 2
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 266 2.7e-25 2
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 266 2.7e-25 2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 264 3.5e-25 2
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 264 3.5e-25 2
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib... 263 3.5e-25 2
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 257 3.5e-25 2
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 256 4.4e-25 2
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 256 4.4e-25 2
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 255 5.6e-25 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 255 5.6e-25 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 255 5.6e-25 2
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 255 5.6e-25 2
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 255 5.6e-25 2
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 255 5.6e-25 2
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 254 9.1e-25 2
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 253 9.1e-25 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 249 9.1e-25 2
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 249 9.1e-25 2
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 282 9.7e-25 1
UNIPROTKB|F1N4K3 - symbol:F1N4K3 "Uncharacterized protein... 258 1.2e-24 2
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 248 1.2e-24 2
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 248 1.2e-24 2
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 248 1.2e-24 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 248 1.2e-24 2
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 248 1.2e-24 2
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 248 1.2e-24 2
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 245 1.2e-24 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 245 1.2e-24 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 245 1.2e-24 2
FB|FBgn0004903 - symbol:Rb97D "Ribonuclear protein at 97D... 285 1.2e-24 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 280 1.6e-24 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 255 2.4e-24 2
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 254 2.4e-24 2
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 278 3.5e-24 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 276 4.2e-24 1
MGI|MGI:1924384 - symbol:Hnrnpa0 "heterogeneous nuclear r... 254 4.9e-24 2
WARNING: Descriptions of 1009 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 700 (251.5 bits), Expect = 8.0e-77, Sum P(3) = 8.0e-77
Identities = 131/169 (77%), Positives = 152/169 (89%)
Query: 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQV 91
E A+F+KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD SVVDKVI+D HII GKQV
Sbjct: 52 ETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQV 111
Query: 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSR 151
EIKRTIP+G++ S DFKTKKIFVGGIPSSV++DEFK+FFMQFG+++EHQIMRDHST RSR
Sbjct: 112 EIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSR 171
Query: 152 GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN-LPQPSYR 199
GFGF+T+++E VD LLAKGN++EL+G QVE+KKAEPKKPN + PS R
Sbjct: 172 GFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKR 220
Score = 152 (58.6 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
Identities = 42/122 (34%), Positives = 64/122 (52%)
Query: 72 DPSVVDKVIEDTHIINGKQVE-IKRTIPKG---AVGSKDFKTKKIFVGGIPSSVNEDEFK 127
DP + VIED I + K E I+ K + G D KIFVGG+ EF
Sbjct: 2 DPYGTETVIED-EIHDPKPSEDIEDDDDKSQPHSGGGVD-SAGKIFVGGLARETTSAEFL 59
Query: 128 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187
F ++G++ + IM+D T + RGFGF+T+ VD ++ + N + + G QVE+K+
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHI-IIGKQVEIKRTI 117
Query: 188 PK 189
P+
Sbjct: 118 PR 119
Score = 65 (27.9 bits), Expect = 8.0e-77, Sum P(3) = 8.0e-77
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 279 EPSSLGYSGRYGGFNRGYDVTG 300
EP+ LGYSGRYGG GY+ G
Sbjct: 290 EPA-LGYSGRYGGGGGGYNRGG 310
Score = 42 (19.8 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 279 EPSSLGYSGRYGGFNRGYDVTG 300
EP GY G G + GY +G
Sbjct: 333 EPGG-GYGGPSGSYGGGYGSSG 353
Score = 41 (19.5 bits), Expect = 2.6e-74, Sum P(3) = 2.6e-74
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 284 GYSGRYGGFNRG 295
GY G +GG+ G
Sbjct: 267 GYGGEFGGYGGG 278
Score = 40 (19.1 bits), Expect = 8.0e-77, Sum P(3) = 8.0e-77
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 362 YHPYGR 367
YHPYGR
Sbjct: 418 YHPYGR 423
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 653 (234.9 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 123/164 (75%), Positives = 143/164 (87%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTI 97
F KHFGKYGEITDSVIM+DR TGQPRGFGF+T+ADPSVVDKVIEDTH+INGKQVEIKRTI
Sbjct: 35 FNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTI 94
Query: 98 PKGAVG--SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
PKGA G SKD KTKKIFVGGIPS+V EDE KDFF ++G+V EHQ++RDH T+RSRGFGF
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP-NLPQPSY 198
+ FD+E+ VD+LL+KGN +++A QVE+KKAEPKK N PSY
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSY 198
Score = 147 (56.8 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
KIF+GG+ F F ++G++ + IMRD T + RGFGFITF VD ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 171 GNKLELAGAQVEVKKAEPK 189
+ + G QVE+K+ PK
Sbjct: 80 THVIN--GKQVEIKRTIPK 96
Score = 49 (22.3 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 281 SSLGYSGRYGGFNRGY 296
S Y G YGGF+ GY
Sbjct: 210 SYASYGGPYGGFDGGY 225
Score = 47 (21.6 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 279 EPSSLGYSGRYGGFNRGYDVTG 300
EP LGYS R+G + G+ G
Sbjct: 275 EPP-LGYSSRFGPYGSGFGGEG 295
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 471 (170.9 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 91/174 (52%), Positives = 122/174 (70%)
Query: 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQV 91
E F +FGK+GE+ DSVIM DR TG PRGFGFVT+AD +V +KV+E+ H+I+ ++V
Sbjct: 76 ETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKV 135
Query: 92 EIKRTIPKGAVGSKDFK----TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST 147
++KRT+P+G + D K T+KIFVGG+P + EDE K++F +GD+ EHQIM DH T
Sbjct: 136 DLKRTLPRGDKDT-DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHT 194
Query: 148 SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRY 201
RSRGFGF+TF TE +VD L + G EL QVE+K+AEPK+ S+R Y
Sbjct: 195 GRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDN-SFRSY 247
Score = 130 (50.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 91 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 150
+++K ++ S K+FVGG+ + F ++F +FG+V + IM D T
Sbjct: 47 IQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNP 106
Query: 151 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
RGFGF+TF + +L + + ++ +V++K+ P+
Sbjct: 107 RGFGFVTFADSAVAEKVLEEDHVID--DRKVDLKRTLPR 143
Score = 36 (17.7 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G+ G GG+ GY G
Sbjct: 292 GFYGYGGGYGYGYGYGG 308
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 242 (90.2 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 49/90 (54%), Positives = 66/90 (73%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+TKKIFVGG+PSS+ E EFK++F QFG + + +M DH+T R RGFGFITFD+E++VD +
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 168 LAKGNKLELAGAQVEVKKAEPKKPNLPQPS 197
L K EL G VEVK+A PK+ + P+
Sbjct: 180 LHKTFH-ELNGKMVEVKRAVPKELSSTTPN 208
Score = 202 (76.2 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 33/60 (55%), Positives = 50/60 (83%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
++FGKYG++ ++VIM+DR TG+ RGFGF+ +ADPSV ++VI D HII+G+ VE K+ +P+
Sbjct: 33 EYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPR 92
Score = 167 (63.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 37/100 (37%), Positives = 53/100 (53%)
Query: 36 AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIK 94
A+F +F ++G I D V+M D T +PRGFGF+T+ VD V+ T H +NGK VE+K
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Query: 95 RTIPKGAVGSKDFKTKKIFVGGIPSSV-NEDEFKDFFMQF 133
R +PK + ++ I G V N +F F
Sbjct: 196 RAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSF 235
Score = 154 (59.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GGI +E+ +++F ++GD+ E IMRD +T R+RGFGFI F + ++
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM- 74
Query: 171 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNP 204
+K + G VE KKA P+ Q +R+ +P
Sbjct: 75 -DKHIIDGRTVEAKKAVPRDD---QQVLKRHASP 104
Score = 37 (18.1 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 281 SSLGYSGRYGGFNR 294
+S GYSG Y NR
Sbjct: 434 ASEGYSGNYNVGNR 447
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 381 (139.2 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 79/166 (47%), Positives = 110/166 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK- 99
+F YG++ ++VIM+DR TG+ RGFGF+ +ADP V ++VI D HII+G+ VE K+ +P+
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRD 84
Query: 100 ---------------GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144
V +TKKIFVGG+PSS+ E+EFK++F QFG + + +M D
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYD 144
Query: 145 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
H+T R RGFGFITFD++ AVD +L K EL G VEVK+A PK+
Sbjct: 145 HNTQRPRGFGFITFDSDDAVDRVLHKTFH-ELNGKLVEVKRAVPKE 189
Score = 165 (63.1 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKR 95
+F +F ++G I D V+M D T +PRGFGF+T+ VD+V+ T H +NGK VE+KR
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKR 184
Query: 96 TIPK 99
+PK
Sbjct: 185 AVPK 188
Score = 162 (62.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GGI +E+ +D+F +GDV E IMRD +T R+RGFGFI F + V + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIM 65
Query: 171 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNP 204
+ + G VE KKA P+ Q +R+ +P
Sbjct: 66 DKHI-IDGRTVEAKKAVPRDD---QQVLKRHASP 95
Score = 36 (17.7 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 280 PSSLGYSGRYGGFNRGY 296
PSS S GF R Y
Sbjct: 343 PSSSAVSNDNNGFGRNY 359
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 369 (135.0 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 73/169 (43%), Positives = 116/169 (68%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
+HF YGE++ +++M+D+ TG+PRGFGFV ++DPSV+D+V+++ H I+ ++V++KR + +
Sbjct: 24 EHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSR 83
Query: 100 ------GAVGSKDF----------KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143
G G+ + KTKKIFVGG+P ++ ++EF+ +F +G V + IM
Sbjct: 84 EEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMY 143
Query: 144 DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192
D +T+R RGFGF++FD+E AVD +L K +L+G QVEVK+A PK N
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFH-DLSGKQVEVKRALPKDAN 191
Score = 168 (64.2 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKR 95
+F ++F YG +TD IM D+ T +PRGFGFV++ VD V+ T H ++GKQVE+KR
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKR 184
Query: 96 TIPKGA 101
+PK A
Sbjct: 185 ALPKDA 190
Score = 145 (56.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGGI +ED+ ++ F +G+V + +MRD T R RGFGF+ F +D +L +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 171 GNKLELAGAQVEVKKA 186
+ ++ +V+VK+A
Sbjct: 67 KHSIDTR--EVDVKRA 80
Score = 37 (18.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 284 GYSGRYGGFNRG 295
GY+G GG+ G
Sbjct: 262 GYTGSAGGYGAG 273
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 80/173 (46%), Positives = 114/173 (65%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
++F +GE+ ++VI+KDR TG+ RGFGFV +ADP+V + VI + H I+G+ VE K+ +P+
Sbjct: 24 EYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPR 83
Query: 100 ---------------GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144
G+ G +T+KIFVGG+PSSV E +FK +F QFG + +M D
Sbjct: 84 DDQNMVNRSNSSSIQGSPGGPG-RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYD 142
Query: 145 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPS 197
H+T R RGFGFIT+D+E+AV+ +L K EL G VEVK+A PK+ + P PS
Sbjct: 143 HNTQRPRGFGFITYDSEEAVEKVLLKTFH-ELNGKMVEVKRAVPKELS-PGPS 193
Score = 165 (63.1 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 30 VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIING 88
VTE + F +F ++G TD V+M D T +PRGFGF+TY V+KV+ T H +NG
Sbjct: 119 VTE---SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG 175
Query: 89 KQVEIKRTIPK 99
K VE+KR +PK
Sbjct: 176 KMVEVKRAVPK 186
Score = 163 (62.4 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GGI NE+ K++F FG+V E I++D +T R+RGFGF+ F + AV +++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVIT 65
Query: 171 GNKLELAGAQVEVKKAEPK 189
K + G VE KKA P+
Sbjct: 66 -EKHNIDGRLVEAKKAVPR 83
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 80/167 (47%), Positives = 104/167 (62%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE AL + HF KYG I D IMKD TG+ RGFGF+T+ D VD +++D
Sbjct: 168 GLSWD-TTEEAL---VSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKDR 223
Query: 84 HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143
H+++GK ++ KR I K K KIFVGGI V E+EF +FF QFG + + Q+M
Sbjct: 224 HVLDGKLIDPKRAISK----EDQEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMI 279
Query: 144 DHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELAGAQVEVKKAEPK 189
D T RSRGFGF+T+D+ AVD + NK L L G +EVK+A P+
Sbjct: 280 DKDTGRSRGFGFVTYDSPAAVDKVCV--NKYLTLKGKAMEVKRAAPR 324
Score = 156 (60.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKR 95
+F F ++G+I D +M D+ TG+ RGFGFVTY P+ VDKV + ++ + GK +E+KR
Sbjct: 261 EFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEVKR 320
Query: 96 TIPKG 100
P+G
Sbjct: 321 AAPRG 325
Score = 150 (57.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 29/82 (35%), Positives = 52/82 (63%)
Query: 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168
++K F+GG+ E+ F ++G++ ++ IM+D +T RSRGFGF+TF+ ++VD LL
Sbjct: 161 SRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALL 220
Query: 169 AKGNKLELAGAQVEVKKAEPKK 190
+ L+ G ++ K+A K+
Sbjct: 221 KDRHVLD--GKLIDPKRAISKE 240
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 72/169 (42%), Positives = 111/169 (65%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTI-- 97
++F +GE+ +M+++ TG+PRGFGFV ++DP+V+D+V++D H I+ + V++KR +
Sbjct: 24 EYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSR 83
Query: 98 ----PKGAVG----SKDF------KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143
P G G S++F +TKKIFVGG+P ++ DEF+ +F +G V + IM
Sbjct: 84 EEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMI 143
Query: 144 DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192
D +T R RGFGF++FD+E +VD +L K +L G QVEVK+A PK N
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFH-DLNGKQVEVKRALPKDAN 191
Score = 172 (65.6 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 33 PALA--QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGK 89
PAL +F +F YG ++D+VIM D+ T +PRGFGFV++ VD V+ T H +NGK
Sbjct: 119 PALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGK 178
Query: 90 QVEIKRTIPKGA 101
QVE+KR +PK A
Sbjct: 179 QVEVKRALPKDA 190
Score = 144 (55.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GGI +E+ +++F FG+V + +MR+ +T R RGFGF+ F +D +L
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ- 65
Query: 171 GNKLELAGAQVEVKKAEPKKPNLP 194
+K + V+VK+A ++ P
Sbjct: 66 -DKHHIDNRDVDVKRAMSREEQSP 88
Score = 38 (18.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 7 EILTMFINRQTTTQKMTGLSLTPVTEPAL 35
E+L + + R+ T + G ++PA+
Sbjct: 31 EVLQVTVMREKATGRPRGFGFVAFSDPAV 59
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 350 (128.3 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 70/151 (46%), Positives = 104/151 (68%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
++FGKYG +TD IMKD TG+ RGFGF+++ PS VD+V++ HI++GK ++ KR IP+
Sbjct: 177 EYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 236
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
+D KT KIFVGGI V EF++FF Q+G + + Q+M D T +SRGFGF+T+D
Sbjct: 237 D---EQD-KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 292
Query: 160 TEQAVDDLLAKGNK-LELAGAQVEVKKAEPK 189
+ AVD + NK ++ ++E+K+AEP+
Sbjct: 293 SADAVDRVCQ--NKFIDFKDRKIEIKRAEPR 321
Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/100 (30%), Positives = 62/100 (62%)
Query: 90 QVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR 149
Q ++ +T + + ++ K+F+GG+ ED +++F ++G V + +IM+D +T R
Sbjct: 139 QQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR 198
Query: 150 SRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
SRGFGF++F+ +VD+++ + L+ G ++ K+A P+
Sbjct: 199 SRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIPR 236
Score = 140 (54.3 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADP 73
+ Q T K+ + P P +F + F ++G I D+ +M D+ TGQ RGFGFVTY
Sbjct: 237 DEQDKTGKIFVGGIGPDVRPK--EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 294
Query: 74 SVVDKVIEDTHI-INGKQVEIKRTIPK 99
VD+V ++ I +++EIKR P+
Sbjct: 295 DAVDRVCQNKFIDFKDRKIEIKRAEPR 321
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 351 (128.6 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 67/150 (44%), Positives = 99/150 (66%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
++F ++GE+ + +M+D TG+ RGFGF+T+ DP V+ V+ H ++GK ++ KR IP+
Sbjct: 128 EYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPR 187
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
+ KT KIFVGG+ E +FK FFMQFG V + +M D T R RGFGF+TFD
Sbjct: 188 ----DEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFD 243
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
+E AV+ L++ LE+ G +EVKKA+P+
Sbjct: 244 SEAAVEAALSR--PLEILGKTIEVKKAQPR 271
Score = 171 (65.3 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P+G G K+ K+F+GG+ + K++F QFG+VQE +MRD +T RSRGFGF+T
Sbjct: 101 PQGT-GIKE--DGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLT 157
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
F + V+ ++ K + L+ G ++ K+A P+
Sbjct: 158 FKDPKTVNTVMVKEHYLD--GKIIDPKRAIPR 187
Score = 139 (54.0 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 20 QKMTGLSLTPVTEPALAQ-FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
+K + + + V++ A Q F + F ++G + D+ +M D+ TG+PRGFGFVT+ + V+
Sbjct: 191 EKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEA 250
Query: 79 VIEDTHIINGKQVEIKRTIPKG 100
+ I GK +E+K+ P+G
Sbjct: 251 ALSRPLEILGKTIEVKKAQPRG 272
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 67/155 (43%), Positives = 105/155 (67%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+FG+YG+I+++++MKD T + RGFGFVT++DP+ VDKV+ + TH ++GK+V+ K P+
Sbjct: 48 YFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR 107
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ + ++ K +F QFG +++ +M D T+R RGFGF+TF
Sbjct: 108 RAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ 167
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
+E VD + + + E+ VE KKA+PK+ LP
Sbjct: 168 SEDVVDKV-CEIHFHEINNKMVECKKAQPKEVMLP 201
Score = 176 (67.0 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + + +D+F ++GD+ E +M+D +T RSRGFGF+TF +VD +L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 171 GNKLELAGAQVEVKKAEPKK 190
G EL G +V+ K A P++
Sbjct: 90 GTH-ELDGKKVDPKVAFPRR 108
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 311 (114.5 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 60/151 (39%), Positives = 101/151 (66%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIP 98
++F ++G+I D V+MK+ ++G+ RGFGFVT+ADP+ V+ V+++ H ++G+ ++ K P
Sbjct: 25 RYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNP 84
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ K K+F+GG+PS+V E + + FF ++G V E IM D +SRGFGF++F
Sbjct: 85 RTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
+ E +V+ + + + L G QVE+KKAEP+
Sbjct: 145 EEESSVEHVTNE-RYINLNGKQVEIKKAEPR 174
Score = 151 (58.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 30 VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-ING 88
VTE L F F +YG++T+ VIM D++ + RGFGF+++ + S V+ V + +I +NG
Sbjct: 107 VTETDLRTF---FNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNG 163
Query: 89 KQVEIKRTIPKGAVGSKDFKTKKIFVGG 116
KQVEIK+ P+ G ++ VGG
Sbjct: 164 KQVEIKKAEPRDGSGGQNSNNST--VGG 189
Score = 136 (52.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ +F +FGD+ + +M+++ + RSRGFGF+TF V+ +L
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 171 GNKLELAGAQVEVKKAEPKKPNLPQ 195
G L G ++ K P+ P+
Sbjct: 68 GPHT-LDGRTIDPKPCNPRTLQKPK 91
Score = 41 (19.5 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 281 SSLGYSGRYGGFNRGYD 297
S G YGG+ GYD
Sbjct: 366 SKSGSEYDYGGYGSGYD 382
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 201 (75.8 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 39/83 (46%), Positives = 60/83 (72%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+TKKIFVGG+ S+ E+EFK +F +FG + +M D T+R RGFGF+T+D+E +V+ +
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE-V 176
Query: 168 LAKGNKLELAGAQVEVKKAEPKK 190
+ + N EL+ +VEVK+A PK+
Sbjct: 177 VMQSNFHELSDKRVEVKRAIPKE 199
Score = 158 (60.7 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 31 TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQ 90
+E AL Q+ F +YG + ++V+ K++ TG+PRGFGFV +A+ V K + DTH I GK
Sbjct: 18 SEEALKQY---FSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKP 74
Query: 91 VEIKRTIPKGAVGSKDF 107
V++++ I K + + F
Sbjct: 75 VDVRKAIRKHELYQQPF 91
Score = 155 (59.6 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 37/103 (35%), Positives = 57/103 (55%)
Query: 5 LTEILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRG 64
L E+ + + +T + GLS E +F +F ++G TD V+M D T +PRG
Sbjct: 107 LREMSSNGVTSRTKKIFVGGLSSNTTEE----EFKSYFERFGRTTDVVVMHDGVTNRPRG 162
Query: 65 FGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD 106
FGFVTY V+ V++ H ++ K+VE+KR IPK + S +
Sbjct: 163 FGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNN 205
Score = 129 (50.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 165
D+ K+FVGGI +E+ K +F ++G V E + ++ T + RGFGF+ F + D
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND--CD 59
Query: 166 DLLAKGNKLELAGAQVEVKKAEPKKPNLPQP 196
+ A + + G V+V+KA K QP
Sbjct: 60 VVKALRDTHFILGKPVDVRKAIRKHELYQQP 90
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 306 (112.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 67/153 (43%), Positives = 96/153 (62%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 99
HFGKYGEI + D +TG+ RGF F+ + + +DKV D HIIN K+V+ K+ K
Sbjct: 75 HFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKA--K 132
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G KIFVGG+ + ++++E K +F QFG++ E ++ D S+ +GF FITFD
Sbjct: 133 ARHG-------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFD 185
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192
+EQ V DLL K K ++AG +V+VK+A PK N
Sbjct: 186 SEQVVTDLL-KTPKQKIAGKEVDVKRATPKPEN 217
Score = 144 (55.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 160
A G +D +K+FVGG+ E E +D F ++G+++ + D T RSRGF FI F
Sbjct: 48 ASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN 106
Query: 161 EQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
+A+D + A + + +V+ KKA+ +
Sbjct: 107 TEAIDKVSAADEHI-INSKKVDPKKAKAR 134
Score = 44 (20.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 284 GYSGRYGGFNRG 295
GY G YGG+ G
Sbjct: 256 GYGGGYGGYGAG 267
Score = 39 (18.8 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 287 GRYGGFNRGYDVTG 300
G Y G++ GYD G
Sbjct: 276 GYYNGYDYGYDGYG 289
Score = 38 (18.4 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 287 GRYGGFNRGY 296
G YGG+ GY
Sbjct: 252 GSYGGYGGGY 261
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 62/155 (40%), Positives = 103/155 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+FG++GE+ + ++M+D T + RGFGF+T+ DPS VDKV+ + H ++GK+++ K PK
Sbjct: 64 YFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
KTKK+F+GG+ ++ ++ K +F +G V++ +M D +T R RGFGF+TFD
Sbjct: 124 RTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFD 183
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
+++ V D + + + E+ G VE KKA+PK+ LP
Sbjct: 184 SDE-VADKVCEIHFHEINGKMVECKKAQPKEVMLP 217
Score = 174 (66.3 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G+ GS+D K+F+GG+ + +D+F +FG+V E +MRD +T R+RGFGFITF
Sbjct: 37 GSHGSQD--PGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFV 94
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+VD +L + EL G +++ K A PK+
Sbjct: 95 DPSSVDKVL-NNREHELDGKKIDPKVAFPKR 124
Score = 149 (57.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 38/86 (44%), Positives = 51/86 (59%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS T E + Q+ F YG++ D+++M D+ T + RGFGFVT+
Sbjct: 131 TKTKKVFIGGLSATSTLED-MKQY---FETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE 186
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
V DKV E H INGK VE K+ PK
Sbjct: 187 VADKVCEIHFHEINGKMVECKKAQPK 212
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 68/176 (38%), Positives = 109/176 (61%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADP 73
NR+ + GL+ T+ +L + F ++GE+ D +M+D TG+ RGFGF+T+ +P
Sbjct: 159 NREDGKMFIGGLNWE-TTDDSLRDY---FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Query: 74 SVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 133
V++V+ H ++GK ++ KR IP+ + KT K+FVGG+P E+EF++FF QF
Sbjct: 215 KCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQF 270
Query: 134 GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
G V + +M D T R RGFGF+T++ E AV+ +++ + + G VEVK+A PK
Sbjct: 271 GRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPY-ITIHGKPVEVKRATPK 325
Score = 161 (61.7 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKR 95
+F F ++G + D+ +M D+ TG+PRGFGFVTY + S V+ + +I I+GK VE+KR
Sbjct: 262 EFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKR 321
Query: 96 TIPKGAV 102
PK ++
Sbjct: 322 ATPKASL 328
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 73/170 (42%), Positives = 102/170 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V++ H ++G+ ++ K P+
Sbjct: 30 YFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDTKPHNLDGRNIDPKPCTPR 89
Query: 100 GAV-----------GSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS 146
G GSK K+KKIFVGGIP + E E +D+F +FG V E ++ D
Sbjct: 90 GMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAE 149
Query: 147 TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQP 196
R RGFGFITF+ EQ+VD + + ++ G +VEVKKAEP+ P P
Sbjct: 150 KQRPRGFGFITFEAEQSVDQAVNM-HFHDIMGKKVEVKKAEPRDSKAPAP 198
Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ S ++ +++F Q+G+V + IM+D ST++SRGFGF+ F V +L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 170 KGNKLELAGAQVEVKKAEPK 189
K + L+ G ++ K P+
Sbjct: 72 KPHNLD--GRNIDPKPCTPR 89
Score = 122 (48.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 36 AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94
A+ +F ++G +T+ V++ D + +PRGFGF+T+ VD+ + H I GK+VE+K
Sbjct: 127 AELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 95 RTIPK 99
+ P+
Sbjct: 187 KAEPR 191
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 289 (106.8 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 59/153 (38%), Positives = 93/153 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF K+G I D V+MKD +T + RGFGF+TY+ S++D+ + H I+G+ VE KR +P+
Sbjct: 50 HFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPR 109
Query: 100 GAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
+ S + KK+FVG + +E +D+F FG++ + I+ D T + RGF F+
Sbjct: 110 QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVE 169
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
FD VD ++ + + +L G V+VKKA PK+
Sbjct: 170 FDDYDPVDKVVLQ-KQHQLNGKMVDVKKALPKQ 201
Score = 142 (55.0 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ ++ K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-Q 89
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLPQPS 197
K ++ G VE K+A P++ ++ P+
Sbjct: 90 KSRPHKIDGRVVEPKRAVPRQ-DIDSPN 116
Score = 45 (20.9 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 284 GYSGRYGGFNRGYDVTGD 301
G G YGG N+G++ G+
Sbjct: 344 GNQGNYGGNNQGFNNGGN 361
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 69/167 (41%), Positives = 104/167 (62%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K+ P+
Sbjct: 74 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPR 133
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF+
Sbjct: 134 ----SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 189
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 203
EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 190 DEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 235
Score = 147 (56.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 114
Query: 170 KGNKLELAGAQVEVKKAEPKKPN 192
L G ++ K+ P+ N
Sbjct: 115 S-RPHTLDGRNIDPKQKGPRSDN 136
Score = 133 (51.9 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 158 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 217
Query: 99 K 99
+
Sbjct: 218 R 218
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 65/160 (40%), Positives = 102/160 (63%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+
Sbjct: 40 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+
Sbjct: 100 RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 199
E V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 160 NEDVVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 168 (64.2 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G+ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+VD +L + + EL ++ K A P++
Sbjct: 71 DPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100
Score = 147 (56.8 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS V E + Q+ + FGK + D+++M D+ T + RGFGFVT+ +
Sbjct: 107 TRTKKIFVGGLSANTVVED-VKQYFEQFGK---VEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
VV+KV E H IN K VE K+ PK
Sbjct: 163 VVEKVCEIHFHEINNKMVECKKAQPK 188
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 65/160 (40%), Positives = 102/160 (63%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+
Sbjct: 40 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+
Sbjct: 100 RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 199
E V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 160 NEDVVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 168 (64.2 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G+ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+VD +L + + EL ++ K A P++
Sbjct: 71 DPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100
Score = 147 (56.8 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS V E + Q+ + FGK + D+++M D+ T + RGFGFVT+ +
Sbjct: 107 TRTKKIFVGGLSANTVVED-VKQYFEQFGK---VEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
VV+KV E H IN K VE K+ PK
Sbjct: 163 VVEKVCEIHFHEINNKMVECKKAQPK 188
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 65/160 (40%), Positives = 102/160 (63%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+
Sbjct: 18 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 77
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+
Sbjct: 78 RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 137
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 199
E V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 138 NEDVVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 175
Score = 161 (61.7 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 112 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171
+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 172 NKLELAGAQVEVKKAEPKK 190
+ EL ++ K A P++
Sbjct: 61 HH-ELDSKTIDPKVAFPRR 78
Score = 147 (56.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS V E + Q+ + FGK + D+++M D+ T + RGFGFVT+ +
Sbjct: 85 TRTKKIFVGGLSANTVVED-VKQYFEQFGK---VEDAMLMFDKTTNRHRGFGFVTFENED 140
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
VV+KV E H IN K VE K+ PK
Sbjct: 141 VVEKVCEIHFHEINNKMVECKKAQPK 166
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 286 (105.7 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 56/153 (36%), Positives = 92/153 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +YG++TD V++++++ + R FGFVTY+ P D + HI++G VE+KR + +
Sbjct: 29 HFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSARPHILDGNNVELKRAVAR 88
Query: 100 GAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
G + K KKIF+GG+ + ED +D F QFG V++ +++ D T + RGFGF+
Sbjct: 89 EDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVY 148
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
F+ + D + + + G +VEVKKA K+
Sbjct: 149 FEDNDSADKAVVLKFHM-INGHKVEVKKALTKQ 180
Score = 115 (45.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ +D ++ F Q+G + + ++++ RSR FGF+T+ + D ++
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 171 GNKLELAGAQVEVKKA 186
+ L G VE+K+A
Sbjct: 71 RPHI-LDGNNVELKRA 85
Score = 41 (19.5 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 284 GYSGRYGG-FNRGY 296
GY G YGG + GY
Sbjct: 232 GYGGGYGGGYGGGY 245
Score = 41 (19.5 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 284 GYSGRYGG-FNRGY 296
GY G YGG + GY
Sbjct: 228 GYGGGYGGGYGGGY 241
Score = 37 (18.1 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 284 GYSGRYGGFNRGY 296
GY G YG GY
Sbjct: 240 GYGGGYGDQMEGY 252
Score = 37 (18.1 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 284 GYSGRYGGF-NRG 295
GY GR GG+ N G
Sbjct: 207 GYGGRGGGYGNYG 219
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 65/160 (40%), Positives = 101/160 (63%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GEI + ++M+D T + RGFGF+T+AD S VDKV+ + H ++ K ++ K P+
Sbjct: 40 YFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPR 99
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ +S ++ K +F QFG V++ +M D +T+R RGFGF+TF+
Sbjct: 100 RAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 199
E V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 160 NEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 176 (67.0 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
+ G++ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGFI
Sbjct: 8 VTSGSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFI 67
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
TF +VD +LA+ + EL ++ K A P++
Sbjct: 68 TFADVSSVDKVLAQPHH-ELDSKTIDPKVAFPRR 100
Score = 147 (56.8 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS + V E + Q+ + FGK + D+++M D+ T + RGFGFVT+ +
Sbjct: 107 TRTKKIFVGGLSASTVVED-VKQYFEQFGK---VEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
+V+KV E H IN K VE K+ PK
Sbjct: 163 IVEKVCEIHFHEINNKMVECKKAQPK 188
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 64/160 (40%), Positives = 101/160 (63%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GEI + ++M+D T + RGFGFVT+AD + VDKV+ + H ++ K ++ K P+
Sbjct: 40 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPR 99
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+
Sbjct: 100 RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 199
E V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 160 NEDVVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 170 (64.9 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +LA+
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ EL ++ K A P++
Sbjct: 82 PHH-ELDSKTIDPKVAFPRR 100
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS V E + Q+ + FGK + D+++M D+ T + RGFGFVT+ +
Sbjct: 107 TRTKKIFVGGLSANTVVED-VKQYFEQFGK---VEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
VV+KV E H IN K VE K+ PK
Sbjct: 163 VVEKVCEIHFHEINNKMVECKKAQPK 188
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 314 (115.6 bits), Expect = 2.4e-27, P = 2.4e-27
Identities = 63/156 (40%), Positives = 97/156 (62%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F +G +TD +IMKD T + RGFGF+T+ +P V+KV++ H ++GK+++ K P
Sbjct: 221 EYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATP 280
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K + KTKKIFVGG+ + +E K +F QFG V+E ++ D T R RGFGF+TF
Sbjct: 281 KNRPRQAN-KTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTF 339
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
+ E VD + + + + +VE KKA+PK+ P
Sbjct: 340 ENEDVVDRV-CEIHFHTIKNKKVECKKAQPKEAVTP 374
Score = 156 (60.0 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 41/102 (40%), Positives = 57/102 (55%)
Query: 95 RTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF 153
R+ P + GS D K+FVGG+ + D+ K++F FG V + IM+D T RSRGF
Sbjct: 187 RSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGF 246
Query: 154 GFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQ 195
GFITF V+ +L K L G +++ K A PK N P+
Sbjct: 247 GFITFQEPCTVEKVL-KVPIHTLDGKKIDPKHATPK--NRPR 285
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 74/180 (41%), Positives = 106/180 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIK----- 94
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 95 -----RTIPK-GAVG--SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS 146
RT PK G G S K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE 148
Query: 147 TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 203
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 149 KQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGS 207
Score = 142 (55.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQP 196
L G ++ K P+ +P +P
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 130 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 189
Query: 99 K 99
+
Sbjct: 190 R 190
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 63/168 (37%), Positives = 103/168 (61%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 18 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 77
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 78 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 137
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 138 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 184
Score = 163 (62.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 61 -SRHELDSKTIDPKVAFPRR 79
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 63/168 (37%), Positives = 103/168 (61%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 64/160 (40%), Positives = 99/160 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ +S++M+D T + RGFGFVT+ D + VDKV+ T H ++ K ++ K P+
Sbjct: 39 YFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPR 98
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF+
Sbjct: 99 RAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 199
E V+ + + + E+ VE KKA+PK+ P S R
Sbjct: 159 NEDVVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSSR 197
Score = 171 (65.3 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ KD+F +FG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ EL ++ K A P++
Sbjct: 81 -TRHELDSKTIDPKVAFPRR 99
Score = 142 (55.0 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS+ E ++F ++G++ D+++M D+ T + RGFGFVT+ +
Sbjct: 106 TRTKKIFVGGLSVNTTIEDVK----QYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 161
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
VV+KV E H IN K VE K+ PK
Sbjct: 162 VVEKVCEIHFHEINNKMVECKKAQPK 187
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 63/168 (37%), Positives = 103/168 (61%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 63/168 (37%), Positives = 103/168 (61%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 63/168 (37%), Positives = 103/168 (61%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 63/168 (37%), Positives = 103/168 (61%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 5 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 64
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 65 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 124
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 125 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 171
Score = 136 (52.9 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 127 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 4 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 62
Query: 187 EPKK 190
P++
Sbjct: 63 FPRR 66
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 70/173 (40%), Positives = 102/173 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 19 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 78
Query: 100 GAV------------GSK--DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G GS+ + K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 79 GMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 138
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLPQP 196
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P P
Sbjct: 139 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQTPGP 190
Score = 142 (55.0 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQP 196
L G ++ K P+ +P +P
Sbjct: 61 -RPHTLDGRNIDPKPCTPRGMQPERTRP 87
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 99 K 99
+
Sbjct: 181 R 181
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 273 (101.2 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + + VD+V++ H ++G+Q++ PK
Sbjct: 64 YFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQID-----PK 118
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F FG+++ ++ D TS+ RGF FITF
Sbjct: 119 RAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFK 178
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E AV +L K + G++ E+K A+PK+
Sbjct: 179 EEFAVKKILEKKYH-NVCGSKCEIKIAQPKE 208
Score = 152 (58.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +VD +L +
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 171 GNKLELAGAQVEVKKA 186
+ L G Q++ K+A
Sbjct: 106 -KEHRLDGRQIDPKRA 120
Score = 113 (44.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 33/108 (30%), Positives = 51/108 (47%)
Query: 11 MFINRQTTTQKMTGLSLTP-VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVT 69
M I ++ + G L P TE + ++ FG +GEI + D KT + RGF F+T
Sbjct: 121 MAIKKEPVKKIFVG-GLNPETTEEKIREY---FGSFGEIETIELPTDPKTSKRRGFVFIT 176
Query: 70 YADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGG 116
+ + V K++E H + G + EIK PK + F + GG
Sbjct: 177 FKEEFAVKKILEKKYHNVCGSKCEIKIAQPKEIYQQQQFGARGGGFGG 224
Score = 44 (20.5 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 285 YSGRYGGFNRGYDVT 299
YS Y G+ GYD T
Sbjct: 272 YSSGYYGYGSGYDYT 286
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 277 (102.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 56/151 (37%), Positives = 93/151 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+TD I D TG+ RGFGF+ + +P V+KV+E H ++G+ ++ PK
Sbjct: 19 YFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLID-----PK 73
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D T++ RGF FITF
Sbjct: 74 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK 133
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E V +L K ++G++ E+K A+PK+
Sbjct: 134 EEDPVKKVLEKKFH-NVSGSKCEIKVAQPKE 163
Score = 141 (54.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ L G ++ KKA K
Sbjct: 61 -KEHRLDGRLIDPKKAMAMK 79
Score = 114 (45.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIP 98
++FG++GEI + D KT + RGF F+T+ + V KV+E H ++G + EIK P
Sbjct: 102 EYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQP 161
Query: 99 KGAVGSKDFKT 109
K + F +
Sbjct: 162 KEVYQQQQFSS 172
Score = 38 (18.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 281 SSLGYSGRYGGFNRG 295
SS G G YGG RG
Sbjct: 171 SSGGGRGSYGGRGRG 185
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 277 (102.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 56/151 (37%), Positives = 93/151 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+TD I D TG+ RGFGF+ + +P V+KV+E H ++G+ ++ PK
Sbjct: 19 YFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLID-----PK 73
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D T++ RGF FITF
Sbjct: 74 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK 133
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E V +L K ++G++ E+K A+PK+
Sbjct: 134 EEDPVKKVLEKKFH-NVSGSKCEIKVAQPKE 163
Score = 141 (54.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ L G ++ KKA K
Sbjct: 61 -KEHRLDGRLIDPKKAMAMK 79
Score = 114 (45.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIP 98
++FG++GEI + D KT + RGF F+T+ + V KV+E H ++G + EIK P
Sbjct: 102 EYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQP 161
Query: 99 KGAVGSKDFKT 109
K + F +
Sbjct: 162 KEVYQQQQFSS 172
Score = 38 (18.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 281 SSLGYSGRYGGFNRG 295
SS G G YGG RG
Sbjct: 171 SSGGGRGSYGGRGRG 185
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 274 (101.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 60/159 (37%), Positives = 96/159 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GE+TD I D TG+ RGFGF+ + +PS VDKV+ + H ++G+Q++ PK
Sbjct: 114 YFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQID-----PK 168
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E+ +++F FG+++ ++ D +++ RGF FITF
Sbjct: 169 KAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFK 228
Query: 160 TEQAVDDLLAK------GNKLELAGAQ--VEVKKAEPKK 190
E+AV +L K G K + +G + E+K A+PK+
Sbjct: 229 EEEAVKKILEKKYHNVSGTK-DTSGKEGLCEIKIAQPKE 266
Score = 158 (60.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F VD +LA+
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ L G Q++ KKA K
Sbjct: 156 -KEHRLDGRQIDPKKAMAMK 174
Score = 41 (19.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 285 YSGRYGGFNRG 295
Y GR+GG RG
Sbjct: 273 YGGRFGGGGRG 283
Score = 39 (18.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 284 GYSGRYGGF--NRG 295
GY G YGG+ N+G
Sbjct: 333 GYYGGYGGYDYNQG 346
Score = 38 (18.4 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 285 YSGRY-GGFNRGYD 297
YSG Y GG+ GYD
Sbjct: 330 YSGGYYGGYG-GYD 342
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 71/181 (39%), Positives = 105/181 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 19 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 78
Query: 100 GAV--------G------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G G S + K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 79 GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 138
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYN 202
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++
Sbjct: 139 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 197
Query: 203 N 203
+
Sbjct: 198 S 198
Score = 143 (55.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 205
L G ++ K P+ +P +P P+
Sbjct: 61 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 96
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 99 K 99
+
Sbjct: 181 R 181
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 71/181 (39%), Positives = 105/181 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAV--------G------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G G S + K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYN 202
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++
Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 207
Query: 203 N 203
+
Sbjct: 208 S 208
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 205
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 99 K 99
+
Sbjct: 191 R 191
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 71/181 (39%), Positives = 105/181 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAV--------G------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G G S + K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYN 202
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++
Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 207
Query: 203 N 203
+
Sbjct: 208 S 208
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 205
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 99 K 99
+
Sbjct: 191 R 191
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 71/181 (39%), Positives = 105/181 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAV--------G------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G G S + K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYN 202
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++
Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWG 207
Query: 203 N 203
+
Sbjct: 208 S 208
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 205
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 99 K 99
+
Sbjct: 191 R 191
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 63/168 (37%), Positives = 102/168 (60%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 5 EYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 64
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 65 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 124
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 125 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 171
Score = 130 (50.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 127 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+++F QFG+ +E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 4 REYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 62
Query: 187 EPKK 190
P++
Sbjct: 63 FPRR 66
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 71/181 (39%), Positives = 104/181 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAV--------G------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G G S K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYN 202
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++
Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWG 207
Query: 203 N 203
+
Sbjct: 208 S 208
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 205
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 99 K 99
+
Sbjct: 191 R 191
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 71/181 (39%), Positives = 104/181 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAV--------G------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G G S K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYN 202
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P QP ++
Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWG 207
Query: 203 N 203
+
Sbjct: 208 S 208
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQPSYRRYNNPK 205
L G ++ K P+ +P +P P+
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 99 K 99
+
Sbjct: 191 R 191
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 69/167 (41%), Positives = 100/167 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ K
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN-------QK 81
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G S + K+ KIFVGGIP + E E +++F +FG V E ++ D R RGFGFITF+
Sbjct: 82 GP-RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 140
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLP-QPSYRRYNN 203
EQ+VD + + ++ G +VEVK+AEP+ K P QP ++ +
Sbjct: 141 DEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 186
Score = 133 (51.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 109 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 168
Query: 99 K 99
+
Sbjct: 169 R 169
Score = 133 (51.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPKKPN 192
L G + +++ K N
Sbjct: 71 -RPHTLDGRNQKGPRSDNSKSN 91
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 305 (112.4 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 57/156 (36%), Positives = 103/156 (66%)
Query: 41 HFGKYGEITDSVIMK-DRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
+F +GE+ +S+++K K + RGFGFVT+ DPSV+D+VI H I GK VEI+R IPK
Sbjct: 125 YFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVILINHSIEGKNVEIRRAIPK 184
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
+ +++ K +K+FVGG+P + D+F ++F +FG++ E+ ++ + + + +GFGFI F
Sbjct: 185 EEM-TEEPKKQKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKNGT-IKGFGFICFK 242
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQ 195
E +V++++ + + G +V+++ A+ + L Q
Sbjct: 243 DE-SVNEIILNEQQHIILGKRVDIRIADSQNKRLQQ 277
Score = 159 (61.0 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 31/91 (34%), Positives = 56/91 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR-DHSTSRSRGFGFITFDTEQAVDDLLA 169
KIFVGG+ + + + KD+F FG+V+E +++ S+SRGFGF+TF +D+++
Sbjct: 107 KIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVIL 166
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
+ +E G VE+++A PK+ +P ++
Sbjct: 167 INHSIE--GKNVEIRRAIPKEEMTEEPKKQK 195
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 71/174 (40%), Positives = 102/174 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAV--------G--SKDFKTK-----KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144
G G K+ +T+ KIFVGGIP + E E K++F +FG V E ++ D
Sbjct: 89 GMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYD 148
Query: 145 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK--KPNLPQP 196
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+ K P P
Sbjct: 149 AEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRAEPRDSKSQTPGP 201
Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 GNKLELAGAQVEVKKAEPK--KPNLPQP 196
L G ++ K P+ +P +P
Sbjct: 71 -RPHTLDGRNIDPKPCTPRGMQPERSRP 97
Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++F ++G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+KR P
Sbjct: 132 EYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 191
Query: 99 K 99
+
Sbjct: 192 R 192
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 62/168 (36%), Positives = 102/168 (60%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QF V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
++E V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 158 ESEDIVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 163 (62.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 262 (97.3 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 52/153 (33%), Positives = 90/153 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F ++G +TD V++++ + + R FGFVTY+ D + H+++GK VE+KR + +
Sbjct: 27 YFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAARPHVVDGKNVEVKRAVAR 86
Query: 100 GAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
G + K KKIFVGG+ + E + +FF QFG +++ +++ D T + RGFGF+
Sbjct: 87 EDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVH 146
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
F+ + D + + + G +VEVKKA K+
Sbjct: 147 FEDNDSADKAVVLKFHM-INGHKVEVKKALTKQ 178
Score = 129 (50.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
K K+FVGG+ D + +F QFG++ + ++++ RSR FGF+T+ T + D
Sbjct: 6 KLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAA 65
Query: 168 LAKGNKLELAGAQVEVKKA 186
+A + + G VEVK+A
Sbjct: 66 MAARPHV-VDGKNVEVKRA 83
Score = 45 (20.9 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 284 GYSGRYGGFNRGY 296
GY G YGG + GY
Sbjct: 219 GYGGGYGGNDGGY 231
Score = 41 (19.5 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 284 GYSGRYGGFNRGY 296
G G YGG+ GY
Sbjct: 208 GRGGGYGGYGGGY 220
Score = 41 (19.5 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 284 GYSGRYGG-FNRGY 296
GY G YGG + GY
Sbjct: 239 GYGGGYGGGYGGGY 252
Score = 40 (19.1 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 284 GYSGRYGGFNRGY 296
GY G GG+ GY
Sbjct: 212 GYGGYGGGYGGGY 224
Score = 39 (18.8 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 284 GYSGRYGGFNRGYD 297
GY G YGG G D
Sbjct: 215 GYGGGYGGGYGGND 228
Score = 37 (18.1 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY G GG+ Y G
Sbjct: 223 GYGGNDGGYGGSYGSGG 239
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 267 (99.0 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 41 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 142 (55.0 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 32/104 (30%), Positives = 61/104 (58%)
Query: 94 KRTIPKGAVG---SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 150
+R +GA G + + +K+F+GG+ +D ++ F ++G + + +MRD T RS
Sbjct: 16 RRRRRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRS 75
Query: 151 RGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKAEPKKPNL 193
RGFGF+T+ + VD + A+ +K++ G VE K+A ++ ++
Sbjct: 76 RGFGFVTYSCVEEVDAAMCARPHKVD--GRVVEPKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 280 PSSLG-YSGRYGGFNRGYD 297
P G G YGG GYD
Sbjct: 294 PGGYGNQGGGYGGGGGGYD 312
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 57/169 (33%), Positives = 98/169 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKG 100
+ K+G++ D ++MKDR TG+ RGFG+VT+A ++ H + + +E+K PK
Sbjct: 22 YMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKE 81
Query: 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 160
+ K +IFV IPSSV+E +F+ F ++G++ + + +D+++ + RG GFITF +
Sbjct: 82 EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSS 141
Query: 161 EQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQ--PSYRRYNNPKPA 207
+V+DL+ + +L G V V +A PK+ + P P R + P A
Sbjct: 142 ADSVEDLMEDTH--DLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVA 188
Score = 161 (61.7 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+ V GIP ++ D KD+ +FGD+++ +M+D ST RSRGFG++TF + + + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLPQPS 197
KG L +EVK A PK+ + QP+
Sbjct: 62 KGEHF-LGNRILEVKVATPKE-EMRQPA 87
Score = 150 (57.9 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
KIFVG +P + D+ +D+F +FG +Q+ I +D S RGFGF+TF E V D +A+
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 171 GNKLELAGAQVEVKKAEP 188
+ E+ G +V + A P
Sbjct: 300 RSH-EICGQEVAIDSATP 316
Score = 145 (56.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 36 AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR 95
+ F HF +YGEITD + KD + Q RG GF+T++ V+ ++EDTH + G V + R
Sbjct: 105 SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDR 164
Query: 96 TIPK 99
PK
Sbjct: 165 ATPK 168
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKG 100
+FG++G I D+ I KD K RGFGFVT+A+ V D+V +H I G++V I P
Sbjct: 259 YFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATPLD 318
Query: 101 AVG 103
G
Sbjct: 319 EAG 321
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 265 (98.3 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 61/166 (36%), Positives = 92/166 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS E A HF ++G +TD V+M+D T + RGFGFVTY+ VD ++
Sbjct: 44 GLSFETTDESLRA----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDAR 99
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + + KK+FVGGI +E+ +++F QFG + E
Sbjct: 100 PHKVDGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVN 159
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
IM + ++ + RGF FITFD AVD ++ + + G EV+KA
Sbjct: 160 IMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHT-VNGHNCEVRKA 204
Score = 136 (52.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ + VD +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 98 ARPHKVD--GRAVEPKRA 113
Score = 118 (46.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 20/61 (32%), Positives = 40/61 (65%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIP 98
++FG++G+I + IM ++ + + RGF F+T+ D VD+ VI+ H +NG E+++ +
Sbjct: 147 EYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALS 206
Query: 99 K 99
+
Sbjct: 207 R 207
Score = 44 (20.5 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 284 GYSGRYGGFNRGY 296
GY+G YGG N GY
Sbjct: 265 GYNG-YGGGNGGY 276
Score = 36 (17.7 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 284 GYSGRYGG 291
GY G YGG
Sbjct: 243 GYGGGYGG 250
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 267 (99.0 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 41 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G G YGG + GY+ G
Sbjct: 254 GSRGSYGGGDGGYNGFG 270
Score = 37 (18.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 287 GRYGGFNRGYD 297
G YGG GYD
Sbjct: 300 GGYGGGGGGYD 310
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 267 (99.0 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 41 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 37 (18.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 287 GRYGGFNRGYD 297
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 267 (99.0 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 41 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 37 (18.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 287 GRYGGFNRGYD 297
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 267 (99.0 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 41 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 267 (99.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 19 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 75 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 134
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 135 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 183
Score = 141 (54.7 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 73 ARPHKVD--GRVVEPKRAVSREDSV 95
Score = 37 (18.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 287 GRYGGFNRGYD 297
G YGG GYD
Sbjct: 279 GGYGGGGGGYD 289
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 264 (98.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 65/181 (35%), Positives = 97/181 (53%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L HF ++G++TD V+M+D + RGFGFVTY+ S VD +
Sbjct: 19 GLSFE-TTEDSLRA---HFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTAR 74
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +++F +G ++
Sbjct: 75 PHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIETID 134
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM + ST + RGF F+TFD VD ++A+ + EV+KA PK+ + S +R
Sbjct: 135 IMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHT-INSHNCEVRKALPKQ-EMQSSSNQR 192
Query: 201 Y 201
Y
Sbjct: 193 Y 193
Score = 140 (54.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ED + F Q+G + + +MRD + RSRGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 169 AKGNKLELAGAQVEVKKAEPKKP-NLP 194
A+ +K++ G VE K+A ++ N P
Sbjct: 73 ARPHKVD--GRVVEPKRAVSREDSNKP 97
Score = 40 (19.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 284 GYSGRYGGFNRGY 296
G+ G YGG GY
Sbjct: 225 GFGGNYGGGPGGY 237
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 267 (99.0 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 56/169 (33%), Positives = 101/169 (59%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GL+ + T+ + +F + ++GEITD ++M+D T + RGFGFVT++ + VD ++
Sbjct: 29 GLT-SNTTDDLMREF---YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQR 84
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
HII+GK V+ KR +P+ + TK+++V G+ ED ++F ++G V + +
Sbjct: 85 PHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSE 144
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I+ D +T + RGFGF+TFD +VD + + + + + G + +V+K K
Sbjct: 145 IILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHM-VNGHRCDVRKGLSK 192
Score = 177 (67.4 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 91 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 150
VEIK G + +KIFVGG+ S+ +D ++F+ QFG++ + +MRD +T RS
Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63
Query: 151 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
RGFGF+TF + VD + + + + G V+ K+A P+
Sbjct: 64 RGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDPKRAVPR 101
Score = 146 (56.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 32/105 (30%), Positives = 57/105 (54%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALAQFI-KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 72
NR + L ++ V E + ++F KYG +T S I+ D+ T +PRGFGFVT+ D
Sbjct: 105 NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Query: 73 PSVVDK-VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGG 116
VD+ V++ +H++NG + ++++ + K + + GG
Sbjct: 165 HDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 209
Score = 36 (17.7 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 284 GYSGRYGG 291
GY G YGG
Sbjct: 251 GYGGDYGG 258
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 266 (98.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 41 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 96
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 156
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 157 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 215
Score = 144 (55.7 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 32/94 (34%), Positives = 56/94 (59%)
Query: 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF 153
K+ PK + + +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGF
Sbjct: 21 KKARPKSP--KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 78
Query: 154 GFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKA 186
GF+T+ T + VD + A+ +K++ G VE K+A
Sbjct: 79 GFVTYATVEEVDAAMNARPHKVD--GRVVEPKRA 110
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 281 SSLGYSGRYGGFNRG 295
S G SG Y +N G
Sbjct: 300 SGYGGSGSYDSYNNG 314
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 281 SSLGYSGRYGGFNRGY 296
+ G G YGG GY
Sbjct: 266 NGFGNDGGYGGGGPGY 281
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 266 (98.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 281 SSLGYSGRYGGFNRG 295
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 281 SSLGYSGRYGGFNRGY 296
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 266 (98.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 281 SSLGYSGRYGGFNRG 295
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 281 SSLGYSGRYGGFNRGY 296
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 266 (98.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 281 SSLGYSGRYGGFNRG 295
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 281 SSLGYSGRYGGFNRGY 296
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 264 (98.0 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 60/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 27 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 82
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +++F ++G ++ +
Sbjct: 83 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 143 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 191
Score = 145 (56.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 32/99 (32%), Positives = 59/99 (59%)
Query: 99 KGAVG---SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
KG VG + + +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF
Sbjct: 7 KGKVGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 66
Query: 156 ITFDTEQAVDDLL-AKGNKLELAGAQVEVKKAEPKKPNL 193
+T+ + VD + A+ +K++ G VE K+A ++ ++
Sbjct: 67 VTYSCVEEVDAAMSARPHKVD--GRVVEPKRAVSREDSV 103
Score = 37 (18.1 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 287 GRYGGFNRGYD 297
G YGG GYD
Sbjct: 231 GGYGGGGGGYD 241
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 264 (98.0 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 60/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 39 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 94
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +++F ++G ++ +
Sbjct: 95 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 154
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 155 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 203
Score = 141 (54.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 93 ARPHKVD--GRVVEPKRAVSREDSV 115
Score = 37 (18.1 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 287 GRYGGFNRGYD 297
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 263 (97.6 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 56/153 (36%), Positives = 86/153 (56%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF K+G I D V+MKD KT + RGFGF+TY+ ++D H I+G+ VE KR +P+
Sbjct: 43 HFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPR 102
Query: 100 GAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
+ S + KK+FVGG+ +E+ +++F FG + I+ D T + RGF FI
Sbjct: 103 QEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIE 162
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
FD VD ++ + + ++VKKA K+
Sbjct: 163 FDDYDPVDKIILQKTH-SIKNKTLDVKKAIAKQ 194
Score = 144 (55.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 169 AKGNKLELAGAQVEVKKAEPKK 190
A+ +K++ G VE K+A P++
Sbjct: 84 ARPHKID--GRTVEPKRAVPRQ 103
Score = 120 (47.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++F +G+I I+ D+ TG+ RGF F+ + D VDK+I + TH I K +++K+ I
Sbjct: 133 EYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIA 192
Query: 99 K 99
K
Sbjct: 193 K 193
Score = 38 (18.4 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 280 PSSLGYSGRYGGFNRG 295
P+ G GGFN+G
Sbjct: 339 PAPYSQGGGGGGFNKG 354
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 257 (95.5 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 58/166 (34%), Positives = 92/166 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD ++ + + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHT-INGHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 131 (51.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 256 (95.2 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 15 GLSFQ-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIE 130
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 131 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 175
Score = 140 (54.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 KGNKLELAGAQVEVKKA 186
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
Score = 133 (51.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 119 YFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 44 (20.5 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 263 GYGNQGGGYGGGYDNYG 279
Score = 38 (18.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 326 PGGSGGSGGYGGRSR 340
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 256 (95.2 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 23 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 78
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 79 PHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 138
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 139 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 183
Score = 139 (54.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 170 KGNKLELAGAQVEVKKA 186
+ G VE K+A
Sbjct: 77 -ARPHTIDGRVVEPKRA 92
Score = 131 (51.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 127 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 186
Score = 44 (20.5 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 271 GYGNQGGGYGGGYDNYG 287
Score = 38 (18.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 334 PGGSGGSGGYGGRSR 348
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 255 (94.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 131 (51.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 255 (94.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 131 (51.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 255 (94.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 131 (51.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 255 (94.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 26 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 82 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 141
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 142 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 186
Score = 141 (54.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 66 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 95
Score = 131 (51.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 130 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 44 (20.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 274 GYGNQGGGYGGGYDNYG 290
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 337 PGGSGGSGGYGGRSR 351
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 255 (94.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 130 (50.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK+ ++ H ING E+++ + +
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 255 (94.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 15 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 131 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 175
Score = 140 (54.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 KGNKLELAGAQVEVKKA 186
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
Score = 131 (51.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 119 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 44 (20.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 263 GYGNQGGGYGGGYDNYG 279
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 326 PGGSGGSGGYGGRSR 340
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 254 (94.5 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 52/151 (34%), Positives = 90/151 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+ ++GE+ D I D TG+ RGFGFV + D VD+V+E T H ++GK ++ KR
Sbjct: 49 YLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRA--- 105
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K+ KK+FVGG+ + E++ +++F +G+++ ++ D T+ RGF F+TF
Sbjct: 106 KAIKGKE-PPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFA 164
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 165 LEEPVQKLL-ENRYHQIGSGKCEIKVAQPKE 194
Score = 128 (50.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ + D+ +FG+V + I D T RSRGFGF+ F ++VD +L
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 171 GNKLELAGAQVEVKKAEPKKPNLP 194
+ +L G ++ K+A+ K P
Sbjct: 91 -TEHKLDGKLIDPKRAKAIKGKEP 113
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 27 LTP-VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-H 84
L+P +TE L ++ FG YGEI + D KT + RGF FVT+A V K++E+ H
Sbjct: 122 LSPDITEEQLREY---FGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYH 178
Query: 85 IINGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 179 QIGSGKCEIKVAQPK 193
Score = 43 (20.2 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 284 GYSGRYGGFNRGYD 297
G GR GFN+GY+
Sbjct: 215 GRGGRGQGFNQGYN 228
Score = 36 (17.7 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 284 GYSGRYGGFNRGYD 297
GY+ + G+ +GYD
Sbjct: 257 GYNYQNYGYGQGYD 270
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 253 (94.1 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 61/167 (36%), Positives = 91/167 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G V +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF TFD VD + L K + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
Score = 141 (54.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
Score = 125 (49.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG++ I+ DR++G+ RGFGF T+ D VDK++ + H ING E+++ + +
Sbjct: 131 YFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 44 (20.5 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 249 (92.7 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 19 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 75
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 76 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFK 134
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 135 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 164
Score = 142 (55.0 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 61 KEHKLN--GKVIDPKRAKAMKTKEP 83
Score = 48 (22.0 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 209 GYNSQGYGGYG-GYDYTG 225
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 249 (92.7 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 18 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 74
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 75 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFK 133
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 134 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 163
Score = 137 (53.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 112 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AK 170
+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 171 GNKLELAGAQVEVKKAEPKKPNLP 194
+KL G ++ K+A+ K P
Sbjct: 61 EHKLN--GKVIDPKRAKAMKTKEP 82
Score = 48 (22.0 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 208 GYNSQGYGGYG-GYDYTG 224
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 66/180 (36%), Positives = 97/180 (53%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD + T
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA PK+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VKGHNCEVRKALPKQEMASASSSQR 194
Score = 138 (53.6 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K A + + +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 159 DTEQAVDDLL-AKGNKLELAGAQVEVKKA 186
T + VD + +K++ G VE K+A
Sbjct: 63 ATVEEVDAAMNTTPHKVD--GRVVEPKRA 89
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 258 (95.9 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 60/167 (35%), Positives = 97/167 (58%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L K++ ++GE+TD V+++D + + RG GFVT++ + VD +
Sbjct: 15 GLSFQ-TTEESLR---KYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAAR 70
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ +E +R IP+ A G + + KK+FVGGI E +++F ++G + +
Sbjct: 71 PHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIE 130
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + R RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 131 IITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAIN--GHHAEVRKA 175
Score = 134 (52.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 24/81 (29%), Positives = 49/81 (60%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ + ++ Q+G++ + ++RD ++ RSRG GF+TF + VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
+ G +E ++A P++
Sbjct: 69 -ARPHSIDGRVLEPRRAIPRE 88
Score = 133 (51.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTI 97
++F KYG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ +
Sbjct: 118 EYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKAL 176
Score = 38 (18.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 280 PSSLGYSGRYGGFNRGY 296
P G SG YGG GY
Sbjct: 314 PGGSGGSGGYGG-RSGY 329
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 248 (92.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 173 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 232 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 248 (92.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 173 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 232 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 248 (92.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 64 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 120
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 121 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 179
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 180 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 209
Score = 142 (55.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 106 KEHKLN--GKVIDPKRAKAMKTKEP 128
Score = 48 (22.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 254 GYNSQGYGGYG-GYDYTG 270
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 248 (92.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 49 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 105
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 106 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 164
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 165 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 194
Score = 142 (55.0 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 91 KEHKLN--GKVIDPKRAKAMKTKEP 113
Score = 48 (22.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 239 GYNSQGYGGYG-GYDYTG 255
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 248 (92.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 173 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 232 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 248 (92.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 173 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 232 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
Score = 48 (22.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 245 (91.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 55/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+G++ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 114 YFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 170
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 171 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 229
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 230 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 259
Score = 146 (56.5 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 156 KEHKLN--GKVIDPKRAKAMKTKEP 178
Score = 51 (23.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 282 SLGYSGR-YGGFNRGYDVTG 300
S GY+ + YGG+ GYD TG
Sbjct: 302 SYGYNSQGYGGYG-GYDYTG 320
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 245 (91.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 55/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+G++ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 95 YFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 151
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 152 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 210
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 211 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 240
Score = 146 (56.5 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 137 KEHKLN--GKVIDPKRAKAMKTKEP 159
Score = 51 (23.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 282 SLGYSGR-YGGFNRGYDVTG 300
S GY+ + YGG+ GYD TG
Sbjct: 283 SYGYNSQGYGGYG-GYDYTG 301
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 245 (91.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 55/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+G++ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 114 YFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 170
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 171 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 229
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 230 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 259
Score = 146 (56.5 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 156 KEHKLN--GKVIDPKRAKAMKTKEP 178
Score = 51 (23.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 282 SLGYSGR-YGGFNRGYDVTG 300
S GY+ + YGG+ GYD TG
Sbjct: 302 SYGYNSQGYGGYG-GYDYTG 320
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 285 (105.4 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 62/164 (37%), Positives = 100/164 (60%)
Query: 27 LTP-VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-H 84
L P TE L F +G++G++ D V+M+D T + RGFGF+TY +VD+ E+ H
Sbjct: 39 LAPYTTEENLKLF---YGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPH 95
Query: 85 IINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142
II+GK VE KR +P+ S++ KK+FVGG+ + +E+ +++F+QFG+V +++
Sbjct: 96 IIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLL 155
Query: 143 RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
D +T + RGF F+ FD AVD + K + + V+VKK+
Sbjct: 156 TDKTTGKRRGFAFVEFDDYDAVDKAILK-KQHAIKYVHVDVKKS 198
Score = 147 (56.8 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ K F+ Q+G V + +MRD +T RSRGFGFIT+ VD A
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDR--A 89
Query: 170 KGNKLELA-GAQVEVKKAEPK 189
+ N+ + G VE K+A P+
Sbjct: 90 QENRPHIIDGKTVEAKRALPR 110
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 54/153 (35%), Positives = 89/153 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +YG++TD V++ ++ + R FGFVTY+ D + HI++G V++KR + +
Sbjct: 25 HFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSARPHIVDGNNVDLKRAVAR 84
Query: 100 GAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
G + K KKIFVGG+ + ++ +D+F QFG +++ Q++ D T + RGFGF+
Sbjct: 85 EDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVY 144
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
FD + D + + G +VEVKKA K+
Sbjct: 145 FDDNDSADKAVVMKFH-SICGHKVEVKKALTKQ 176
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 255 (94.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 60/167 (35%), Positives = 92/167 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 26 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 82 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 141
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + L K + + G EV+KA
Sbjct: 142 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 186
Score = 141 (54.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 66 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 95
Score = 131 (51.2 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 130 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 38 (18.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 297 PGGSGGSGGYGGRSR 311
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 254 (94.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 56/154 (36%), Positives = 89/154 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 31 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 90
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 91 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVY 150
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVEVKKAEPKK 190
F A D + K + ++ G +VEVKKA PK+
Sbjct: 151 FQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 182
Score = 131 (51.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVE 92
A I+HF ++G + + I+ D+++G+ RGFGFV + + DK + H I G +VE
Sbjct: 115 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 174
Query: 93 IKRTIPKGAVGS 104
+K+ +PK + S
Sbjct: 175 VKKAVPKEDIHS 186
Score = 106 (42.4 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 160
AV ++ + K+F+GG+ +E + F FG + + ++ + T RSR FGF+T+
Sbjct: 3 AVEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 62
Query: 161 EQAVDDLLAKGNKLELAGAQVEVKKA 186
+ D +A + + G VE+K+A
Sbjct: 63 VEEADAAMA-ASPHAVDGNTVELKRA 87
Score = 40 (19.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 115 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 154
GG SS ++ + F FG +HQ + +S G G
Sbjct: 242 GGGGSSYGGSDYGNGFGGFGSYSQHQ--SSYGPMKSGGGG 279
Score = 39 (18.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 284 GYS--GRYGGFNRGYDVTG 300
GY+ G YGG GY+ G
Sbjct: 221 GYNSYGGYGGGGGGYNAYG 239
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 278 (102.9 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 62/154 (40%), Positives = 90/154 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF ++G +TD V+MKD T + RGFGFVTY+ V+ ++ H ++G+ VE KR + +
Sbjct: 52 HFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDARPHKVDGRLVEPKRAVSR 111
Query: 100 GAVGSKDFK---TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
SK F KKIFVGGI E+ +D+F QFG ++ +IM DH T RGF F+
Sbjct: 112 ED-SSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFV 170
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
TFD +VD ++ + + G EV+KA K+
Sbjct: 171 TFDDHDSVDRIVIQKYHT-VNGHNCEVRKALSKQ 203
Score = 132 (51.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D + F Q+G + + +M+D +T RSRGFGF+T+ + V+ +
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 93 ARPHKVD--GRLVEPKRA 108
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 57/151 (37%), Positives = 91/151 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE++D I D TG+ RGFGF+ + D VDKV+E H ++G+ ++ PK
Sbjct: 83 YFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLID-----PK 137
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ ED+ +++F FG+++ ++ D T++ RGF FITF
Sbjct: 138 KAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFK 197
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E V +L K ++G++ E+K A+PK+
Sbjct: 198 EEDPVKKILEKKFH-NVSGSKCEIKIAQPKE 227
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F ++VD +L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 125 KEHRLD--GRLIDPKKAMAMK 143
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 254 (94.5 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 56/154 (36%), Positives = 90/154 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 26 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVY 145
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVEVKKAEPKK 190
F + A D + K + ++ G +VEVKKA PK+
Sbjct: 146 FQSHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177
Score = 129 (50.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVE 92
A I+HF ++G + + I+ D+++G+ RGFGFV + DK + H I G +VE
Sbjct: 110 AEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVE 169
Query: 93 IKRTIPK 99
+K+ +PK
Sbjct: 170 VKKAVPK 176
Score = 36 (17.7 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 284 GYSGRYGG 291
GY G YGG
Sbjct: 295 GYGGGYGG 302
Score = 36 (17.7 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 115 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 154
GG S ++ + F FG +HQ + +S G G
Sbjct: 240 GGGGGSYGGSDYGNGFGGFGSYSQHQ--SSYGPMKSGGGG 277
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 252 (93.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 53/149 (35%), Positives = 82/149 (55%)
Query: 44 KYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GA 101
K+G +TD V+M+D +T + RGFGFVTY+ V + H ++G+ VE KR + +
Sbjct: 42 KWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCARPHKVDGRVVEPKRAVSREDSV 101
Query: 102 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 161
KKIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD
Sbjct: 102 KPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDH 161
Query: 162 QAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
VD ++ + + G EVKKA K+
Sbjct: 162 DTVDKIVVQKYHT-INGHNCEVKKALSKQ 189
Score = 142 (55.0 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 99
+F KYG+I +M+DR++G+ RGF FVT+ D VDK V++ H ING E+K+ + K
Sbjct: 129 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 188
Score = 122 (48.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/91 (29%), Positives = 52/91 (57%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 162
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ E+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 163 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ A+ +K++ G VE K+A ++ ++
Sbjct: 73 VDAAMCARPHKVD--GRVVEPKRAVSREDSV 101
Score = 38 (18.4 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G G YGG + GY+ G
Sbjct: 239 GSRGSYGGGDGGYNGFG 255
Score = 36 (17.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G +G Y G+N G + G
Sbjct: 289 GGAGGYDGYNEGGNFGG 305
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 243 (90.6 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 58/166 (34%), Positives = 91/166 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + +GK +TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 15 GLSFE-TTEESLRNYYEQWGK---LTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAAR 70
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD ++ + + G EV+KA
Sbjct: 131 IITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTK-NGHNAEVRKA 174
Score = 137 (53.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMA- 68
Query: 171 GNKLELAGAQVEVKKA 186
+ G VE K+A
Sbjct: 69 ARPHSIDGRVVEPKRA 84
Score = 116 (45.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H NG E+++ + +
Sbjct: 119 YFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKALSR 177
Score = 44 (20.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 262 GYGNQGGGYGGGYDNYG 278
Score = 38 (18.4 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 297 PGGSGGSGGYGGRSR 311
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 61/170 (35%), Positives = 94/170 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 14 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCAR 69
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 70 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 129
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + + G EVKKA K+
Sbjct: 130 VMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHI-INGHNCEVKKALSKQ 178
Score = 134 (52.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 27/85 (31%), Positives = 52/85 (61%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+ +GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 68 ARPHKVD--GRVVEPKRAVSREDSV 90
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 246 (91.7 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 51/150 (34%), Positives = 89/150 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
++ ++G +TD V+++D + + R FGF+T++ + +D + H I+GK V KR +P+
Sbjct: 40 YYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVMPKRAVPR 99
Query: 100 ---GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
G +G+ KK+FVGGI + E +D+F ++G + +I+ D + + RGFGFI
Sbjct: 100 EDHGKLGAL-ITVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFI 158
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
TFD VD ++ + N + G + EV+KA
Sbjct: 159 TFDDHDPVDKIVLQKNHT-INGHRAEVRKA 187
Score = 132 (51.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 30 VTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIIN 87
+TE ++ +F KYG+I I+ D ++G+ RGFGF+T+ D VDK++ + H IN
Sbjct: 119 ITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTIN 178
Query: 88 GKQVEIKRTIPK 99
G + E+++ + +
Sbjct: 179 GHRAEVRKALSR 190
Score = 114 (45.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+G + S E+ +++ Q+G + + ++RD ++ +SR FGFITF + +D +A
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ G V K+A P++
Sbjct: 82 RPHF-IDGKMVMPKRAVPRE 100
Score = 36 (17.7 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 282 SLGYSGRYGGFNRG 295
S GY GR GG + G
Sbjct: 244 SHGYGGRAGGGSWG 257
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 60/169 (35%), Positives = 92/169 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ V +
Sbjct: 19 GLSFE-TTDDSLRE---HFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCARP 74
Query: 84 HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 141
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ ++
Sbjct: 75 HKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEV 134
Query: 142 MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 135 MEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 182
Score = 145 (56.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 27/84 (32%), Positives = 52/84 (61%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ E+ + A
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCA 72
Query: 170 KGNKLELAGAQVEVKKAEPKKPNL 193
+ +K++ G VE K+A ++ ++
Sbjct: 73 RPHKVD--GRVVEPKRAVSREDSV 94
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 19 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 75 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 134
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 135 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 183
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 73 ARPHKVD--GRVVEPKRAVSREDSV 95
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 61/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 41 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 157 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 205
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 95 ARPHKVD--GRVVEPKRAVSREDSV 117
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 39 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 94
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 95 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 154
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 155 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 213
Score = 143 (55.4 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 93 ARPHKVD--GRVVEPKRA 108
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 236 (88.1 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 54/152 (35%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + V+KVI + H +NGK ++ K+
Sbjct: 73 YFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKA--- 129
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F +G+V+ ++ ++ T++ RGF FITF
Sbjct: 130 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFK 188
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ EVK A K+
Sbjct: 189 EEEPVKKIMEK--KYHNIGLSKCEVKVAMSKE 218
Score = 143 (55.4 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 34/108 (31%), Positives = 59/108 (54%)
Query: 87 NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS 146
NG Q E + + + +D K+FVGG+ + + KD+F +FG+V + + D
Sbjct: 33 NGGQGEAEGSKIDASKNEED--EGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPL 90
Query: 147 TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
T RSRGFGF+ F ++V+ ++ + + +L G ++ KKA+ K P
Sbjct: 91 TGRSRGFGFVLFKEAESVEKVITQ-KEHKLNGKVIDPKKAKAMKTKEP 137
Score = 44 (20.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 284 GYSGR-YGGFNRGYDVTG 300
GY+ + YGG+ GYD +G
Sbjct: 265 GYNNQGYGGYG-GYDYSG 281
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 54/152 (35%), Positives = 94/152 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 89 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVID-----PK 143
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D +++ RGF FITF
Sbjct: 144 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK 203
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E+ V +L K K ++G++ E+K A+PK+
Sbjct: 204 EEEPVKKVLEK--KFHTISGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
Score = 110 (43.8 bits), Expect = 0.00057, P = 0.00057
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIP 98
++FG++GEI + D K+ + RGF F+T+ + V KV+E H I+G + EIK P
Sbjct: 172 EYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQP 231
Query: 99 K 99
K
Sbjct: 232 K 232
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 56/153 (36%), Positives = 95/153 (62%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 88 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 142
Query: 100 GAVGSKDFKTKKIFVGGI-PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
A+ K KKIFVGG+ P S E++ +++F +FG+++ ++ D ++ RGF FITF
Sbjct: 143 KAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 159 DTEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E+ V +L K K ++G++ E+K A+PK+
Sbjct: 203 KEEEPVKKVLEK--KFHTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 130 KEHRLD--GRVIDPKKAMAMK 148
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 61/164 (37%), Positives = 97/164 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
++F +YG + VI +D +T + RGF FVT A ++++ DTH +NGK+V+++ +
Sbjct: 132 EYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVRE---E 188
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
D + +KIFVGG+ +D + +F FG++ QI+ D S+ RSR FGF+ F
Sbjct: 189 NNTTPSDIQ-RKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFS 246
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNN 203
E +V +L K + ++ VEV+KAEPKKP + S +R NN
Sbjct: 247 NENSVAKVL-KHKRHKIYDKMVEVRKAEPKKPKM---SIKRSNN 286
Score = 135 (52.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K F+GGIP + ++F Q+G VQ I +DH T R+RGF F+T + + +L
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 171 GNKLELAGAQVEVKKAEPKKPN 192
+ EL G +V+V++ P+
Sbjct: 175 TH--ELNGKRVDVREENNTTPS 194
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 61/164 (37%), Positives = 97/164 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
++F +YG + VI +D +T + RGF FVT A ++++ DTH +NGK+V+++ +
Sbjct: 132 EYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVRE---E 188
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
D + +KIFVGG+ +D + +F FG++ QI+ D S+ RSR FGF+ F
Sbjct: 189 NNTTPSDIQ-RKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFS 246
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNN 203
E +V +L K + ++ VEV+KAEPKKP + S +R NN
Sbjct: 247 NENSVAKVL-KHKRHKIYDKMVEVRKAEPKKPKM---SIKRSNN 286
Score = 135 (52.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K F+GGIP + ++F Q+G VQ I +DH T R+RGF F+T + + +L
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 171 GNKLELAGAQVEVKKAEPKKPN 192
+ EL G +V+V++ P+
Sbjct: 175 TH--ELNGKRVDVREENNTTPS 194
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 63/166 (37%), Positives = 92/166 (55%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 13 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD-FKT-KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H +NG+ VE KR + + D + T KKIFVGGI E +D+F Q+G + +
Sbjct: 69 PHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIE 128
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 129 IVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHT-VNGHNCEVRKA 173
Score = 144 (55.7 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 30/92 (32%), Positives = 55/92 (59%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 5 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 168 L-AKGNKLELAGAQVEVKKAEPKKPNLPQPSY 198
+ A+ +K+ G VE K+A ++ + +Y
Sbjct: 65 MNARPHKVN--GRVVEPKRAVSREDSQRPDAY 94
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK
Sbjct: 94 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PK 148
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F QFG+++ ++ D ++ RGF FITF
Sbjct: 149 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK 208
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E V +L K K ++G++ E+K A+PK+
Sbjct: 209 EEDPVKKVLEK--KFHTVSGSKCEIKVAQPKE 238
Score = 143 (55.4 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 136 KEHRLD--GRVIDPKKAMAMK 154
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 64/180 (35%), Positives = 95/180 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALCKQEMASASSSQR 194
Score = 143 (55.4 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 74 ARPHKVD--GRVVEPKRA 89
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK
Sbjct: 107 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PK 161
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F QFG+++ ++ D ++ RGF FITF
Sbjct: 162 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK 221
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E V +L K K ++G++ E+K A+PK+
Sbjct: 222 EEDPVKKVLEK--KFHTVSGSKCEIKVAQPKE 251
Score = 143 (55.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 149 KEHRLD--GRVIDPKKAMAMK 167
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK
Sbjct: 93 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PK 147
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F QFG+++ ++ D ++ RGF FITF
Sbjct: 148 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK 207
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E V +L K K ++G++ E+K A+PK+
Sbjct: 208 EEDPVKKVLEK--KFHTVSGSKCEIKVAQPKE 237
Score = 143 (55.4 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 135 KEHRLD--GRVIDPKKAMAMK 153
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK
Sbjct: 94 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PK 148
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F QFG+++ ++ D ++ RGF FITF
Sbjct: 149 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK 208
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E V +L K K ++G++ E+K A+PK+
Sbjct: 209 EEDPVKKVLEK--KFHTVSGSKCEIKVAQPKE 238
Score = 143 (55.4 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 136 KEHRLD--GRVIDPKKAMAMK 154
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK
Sbjct: 94 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PK 148
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F QFG+++ ++ D ++ RGF FITF
Sbjct: 149 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK 208
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E V +L K K ++G++ E+K A+PK+
Sbjct: 209 EEDPVKKVLEK--KFHTVSGSKCEIKVAQPKE 238
Score = 143 (55.4 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 136 KEHRLD--GRVIDPKKAMAMK 154
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 60/170 (35%), Positives = 93/170 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L + HF K+G +TD V+M+D +T + RGFGFVTY+ VD +
Sbjct: 15 GLSFE-TTDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 70
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +++F ++G ++ +
Sbjct: 71 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 130
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + G EVKKA K+
Sbjct: 131 VMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQ 179
Score = 141 (54.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD +
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 69 ARPHKVD--GRVVEPKRAVSREDSV 91
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 64/181 (35%), Positives = 98/181 (54%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADP 73
N Q + GL++ TE L + HF YG +TD V++ + +T + R FGFVTY+
Sbjct: 24 NSQLCKLFIGGLNVQ-TTEAGLRE---HFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAV 79
Query: 74 SVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
D + + H ++G VE+KR + + A K KK+FVGG+ V E + F
Sbjct: 80 EEADAAMAASPHAVDGNSVELKRAVSREDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHF 139
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKAEPK 189
QFG V++ +I+ D + + RGFGF+ F A D + K + ++ G +VEVKKA PK
Sbjct: 140 SQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPK 197
Query: 190 K 190
+
Sbjct: 198 E 198
Score = 113 (44.8 bits), Expect = 0.00033, P = 0.00033
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P+ G ++ + K+F+GG+ E ++ F +G + + ++ + T RSR FGF+T
Sbjct: 16 PRRGTGMENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVT 75
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+ + D +A + + G VE+K+A
Sbjct: 76 YSAVEEADAAMA-ASPHAVDGNSVELKRA 103
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 240 (89.5 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 59/178 (33%), Positives = 93/178 (52%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 72
IN Q + GL + TE +L + + +GK +TD V+++D + RGFGFVT++
Sbjct: 16 INEQFHKLFIGGLC-SRTTEKSLRNYYQQWGK---LTDCVVLRDPSNKRSRGFGFVTFSS 71
Query: 73 PSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDF 129
+ VD + H ++GK V+ KR + + KK+FVGGI E +D+
Sbjct: 72 VAEVDAAMAARPHSVDGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDY 131
Query: 130 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 186
F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV KA
Sbjct: 132 FEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHHAEVGKA 187
Score = 131 (51.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F KYG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+ + + +
Sbjct: 131 YFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSR 190
Score = 38 (18.4 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 285 YSGRYGGFNRG 295
Y G Y G+ RG
Sbjct: 227 YKGGYNGYGRG 237
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/152 (35%), Positives = 93/152 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 89 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 143
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D ++ RGF FITF
Sbjct: 144 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK 203
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E+ V +L K K ++G++ E+K A+PK+
Sbjct: 204 EEEPVKKVLEK--KFHTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/152 (35%), Positives = 93/152 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 89 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 143
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D ++ RGF FITF
Sbjct: 144 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK 203
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E+ V +L K K ++G++ E+K A+PK+
Sbjct: 204 EEEPVKKVLEK--KFHTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/152 (35%), Positives = 93/152 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 89 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 143
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D ++ RGF FITF
Sbjct: 144 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK 203
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E+ V +L K K ++G++ E+K A+PK+
Sbjct: 204 EEEPVKKVLEK--KFHTVSGSKCEIKVAQPKE 233
Score = 141 (54.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 131 KEHRLD--GRVIDPKKAMAMK 149
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 63/183 (34%), Positives = 95/183 (51%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T +PRGFGFVTY VD +
Sbjct: 13 GLSFE-TTDESLRS---HFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNAR 68
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVG I E +++F Q+G ++ +
Sbjct: 69 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIE 128
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 129 IMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 187
Query: 201 YNN 203
N
Sbjct: 188 GRN 190
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+ G+ ++ + F ++G + + +MRD +T R RGFGF+T+ T + VD + A
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 170 KGNKLELAGAQVEVKKA 186
+ +K++ G VE K+A
Sbjct: 68 RPHKVD--GRVVEPKRA 82
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 238 (88.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 51/131 (38%), Positives = 72/131 (54%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF ++G +TD V+M+D T + RGFGFVTYA VD + +NG+ VE KR + +
Sbjct: 33 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPQKVNGRVVEPKRAVSR 92
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
KKIFVGGI E +D+F Q+G + +IM D + RGF F+T
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDT-EHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVT 151
Query: 158 FDTEQAVDDLL 168
FD +VD ++
Sbjct: 152 FDDHDSVDKIV 162
Score = 134 (52.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+G + ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ K+ G VE K+A
Sbjct: 74 ARPQKVN--GRVVEPKRA 89
Score = 110 (43.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 31 TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGK 89
TE L + + +GK E+ + IM DR G+ RGF FVT+ D VDK VI+ H +NG
Sbjct: 116 TEHHLRDYFEQYGKT-EVIE--IMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH 172
Query: 90 QVEIK 94
E +
Sbjct: 173 NCETR 177
Score = 36 (17.7 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 281 SSLGYSGRYGGFNRG 295
S G SG Y +N G
Sbjct: 219 SGYGGSGSYDSYNNG 233
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 54/152 (35%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 47 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA-- 104
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 105 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 162
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 163 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 193
Score = 128 (50.1 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 90 KEHKLD--GKLIDPKRAKALKGKEP 112
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 121 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 178
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 179 IGSGKCEIKVAQPK 192
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 54/152 (35%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 69 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA-- 126
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 127 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 184
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 185 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 215
Score = 128 (50.1 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 112 KEHKLD--GKLIDPKRAKALKGKEP 134
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 143 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 200
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 201 IGSGKCEIKVAQPK 214
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 54/152 (35%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 69 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA-- 126
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 127 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 184
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 185 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 215
Score = 128 (50.1 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 112 KEHKLD--GKLIDPKRAKALKGKEP 134
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 143 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 200
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 201 IGSGKCEIKVAQPK 214
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 53/152 (34%), Positives = 93/152 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I TG+ +GFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 83 YFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 137
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D T++ RGF FITF
Sbjct: 138 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK 197
Query: 160 TEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
E+ V +L K K ++G++ E+K A+PK+
Sbjct: 198 EEEPVKKVLEK--KFHTISGSKCEIKVAQPKE 227
Score = 129 (50.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I +T RS+GFGFI F +V+ +L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 125 KEHRLD--GRVIDPKKAMAMK 143
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIP 98
++FG++GEI + D KT + RGF F+T+ + V KV+E H I+G + EIK P
Sbjct: 166 EYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQP 225
Query: 99 K 99
K
Sbjct: 226 K 226
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 259 (96.2 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 54/152 (35%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 166 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA-- 223
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 224 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 282 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 312
Score = 128 (50.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 209 KEHKLD--GKLIDPKRAKALKGKEP 231
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 240 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 297
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 298 IGSGKCEIKVAQPK 311
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 259 (96.2 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 54/152 (35%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 166 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA-- 223
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 224 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 282 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 312
Score = 128 (50.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 209 KEHKLD--GKLIDPKRAKALKGKEP 231
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 240 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 297
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 298 IGSGKCEIKVAQPK 311
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 259 (96.2 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 54/152 (35%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 166 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA-- 223
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 224 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 282 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 312
Score = 128 (50.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 209 KEHKLD--GKLIDPKRAKALKGKEP 231
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 240 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 297
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 298 IGSGKCEIKVAQPK 311
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 233 (87.1 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 56/176 (31%), Positives = 94/176 (53%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADP 73
N Q + GLS + TE +L + + ++GE+TD V+++ + + RGFGFVT++
Sbjct: 17 NEQIRKLFIGGLS-SETTEESLKNY---YQQWGELTDCVVIRGLASQKSRGFGFVTFSSV 72
Query: 74 SVVDKVIEDT-HIINGKQVEIKRTIP--KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
+ VD + H I+G+ V+ KR + K KK+FVGGI E +++F
Sbjct: 73 AEVDAAMAARPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYF 132
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
++G + +I+ D + + RGFGF+TFD VD ++ + + G + EV KA
Sbjct: 133 EKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHA-INGHRAEVGKA 187
Score = 142 (55.0 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 28/103 (27%), Positives = 60/103 (58%)
Query: 95 RTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 154
+++P ++ + +K+F+GG+ S E+ K+++ Q+G++ + ++R ++ +SRGFG
Sbjct: 6 KSVPVKREKKENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFG 65
Query: 155 FITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPS 197
F+TF + VD +A + G V+ K+A ++ + Q S
Sbjct: 66 FVTFSSVAEVDAAMA-ARPHSIDGRVVDPKRAVSREKSEKQGS 107
Score = 130 (50.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIP 98
++F KYG+I I+ DR++G+ RGFGFVT+ D VDK+ ++ H ING + E+ + +
Sbjct: 130 EYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALS 189
Query: 99 K 99
+
Sbjct: 190 R 190
Score = 37 (18.1 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 280 PSSLGYSGRYGGFNRGY 296
P G SG YGG GY
Sbjct: 337 PGGNGGSGGYGG-GSGY 352
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 53/152 (34%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + V+KV+E H ++GK ++ KR
Sbjct: 84 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA-- 141
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 142 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 199
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 200 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 230
Score = 124 (48.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +V+ +L
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 127 KEHKLD--GKLIDPKRAKALKGKEP 149
Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 158 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 215
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 216 IGSGKCEIKVAQPK 229
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 53/152 (34%), Positives = 90/152 (59%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
++ ++GE+ D I D TG+ RGFGFV + D + V+KV+E H ++GK ++ KR
Sbjct: 48 EYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA-- 105
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
K G + KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FIT+
Sbjct: 106 KALKGKEP--PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 163
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V LL + ++ + E+K A+PK+
Sbjct: 164 TDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 194
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +V+ +L
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL+ G ++ K+A+ K P
Sbjct: 91 KEHKLD--GKLIDPKRAKALKGKEP 113
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 122 LSPDTSEE--QIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 179
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 180 IGSGKCEIKVAQPK 193
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 260 (96.6 bits), Expect = 7.3e-22, P = 7.3e-22
Identities = 65/179 (36%), Positives = 104/179 (58%)
Query: 40 KHFGKYGEITDSVIMKD--RKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEI--K 94
++FG++GE+ + ++M+D K + RGFGFVT+ D + VDKV+ + H ++ K V+I K
Sbjct: 125 EYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQIDPK 184
Query: 95 RTIPKGAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--EHQIMRDHSTSRS 150
P+ A +TKKIFVGG+ + ++ K +F QF VQ + +M D +T+R
Sbjct: 185 VAFPRRAQPKVQMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRH 244
Query: 151 RG--FGFITFDTEQAVDDLLA-KGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 206
RG FGF+TF++E V+ + +++ QVE KKA+PK+ P S R + P
Sbjct: 245 RGVGFGFVTFESEDIVEKVCEIHFHEINNKMVQVECKKAQPKEVMSPTGSARGRSRVMP 303
Score = 131 (51.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 40/115 (34%), Positives = 64/115 (55%)
Query: 88 GKQVEIKRTIPKGAVGSK-DFKTKKIFVGGI---PS-SVNE----DEFKDFFMQFGDVQE 138
G Q +R + GA G + + ++ GG PS S E + +++F QFG+V+E
Sbjct: 76 GGQWRARRLLGAGAAGPRRGHRGQRTGEGGRARGPSWSEGECVVTEGLREYFGQFGEVKE 135
Query: 139 HQIMRDHSTSRSR--GFGFITFDTEQAVDDLLAKG-NKLELAGAQVEVKKAEPKK 190
+MRD T RSR GFGF+TF + VD +LA+ ++L+ Q++ K A P++
Sbjct: 136 CLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQIDPKVAFPRR 190
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 56/154 (36%), Positives = 89/154 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 31 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 90
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 91 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVY 150
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVEVKKAEPKK 190
F A D + K + ++ G +VEVKKA PK+
Sbjct: 151 FQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 182
Score = 131 (51.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVE 92
A I+HF ++G + + I+ D+++G+ RGFGFV + + DK + H I G +VE
Sbjct: 115 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 174
Query: 93 IKRTIPKGAVGS 104
+K+ +PK + S
Sbjct: 175 VKKAVPKEDIHS 186
Score = 40 (19.1 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 115 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 154
GG SS ++ + F FG +HQ + +S G G
Sbjct: 240 GGGGSSYGGSDYGNGFGGFGSYSQHQ--SSYGPMKSGGGG 277
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 56/154 (36%), Positives = 89/154 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 26 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVY 145
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVEVKKAEPKK 190
F A D + K + ++ G +VEVKKA PK+
Sbjct: 146 FQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177
Score = 131 (51.2 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVE 92
A I+HF ++G + + I+ D+++G+ RGFGFV + + DK + H I G +VE
Sbjct: 110 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 169
Query: 93 IKRTIPKGAVGS 104
+K+ +PK + S
Sbjct: 170 VKKAVPKEDIHS 181
Score = 39 (18.8 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 115 GGIPSSVNEDEFKDFFMQFGDVQEHQ 140
GG SS ++ + F FG +HQ
Sbjct: 242 GGGGSSYGGSDYGNGFGGFGSYSQHQ 267
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 56/154 (36%), Positives = 89/154 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 26 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVY 145
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVEVKKAEPKK 190
F A D + K + ++ G +VEVKKA PK+
Sbjct: 146 FQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177
Score = 130 (50.8 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVE 92
A I+HF ++G + + I+ D+++G+ RGFGFV + + DK + H I G +VE
Sbjct: 110 AEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE 169
Query: 93 IKRTIPK 99
+K+ +PK
Sbjct: 170 VKKAVPK 176
Score = 40 (19.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 115 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 154
GG SS ++ + F FG +HQ + +S G G
Sbjct: 237 GGGGSSYGGSDYGNGFGGFGSYSQHQ--SSYGPMKSGGGG 274
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 56/154 (36%), Positives = 90/154 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 26 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVY 145
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVEVKKAEPKK 190
F + A D + K + ++ G +VEVKKA PK+
Sbjct: 146 FQSHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177
Score = 129 (50.5 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVE 92
A I+HF ++G + + I+ D+++G+ RGFGFV + DK + H I G +VE
Sbjct: 110 AEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVE 169
Query: 93 IKRTIPK 99
+K+ +PK
Sbjct: 170 VKKAVPK 176
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 63/170 (37%), Positives = 96/170 (56%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +T V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFE-TTDESLRS---HF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + + D KKIFVGGI + ED +D+F ++G ++ +
Sbjct: 75 PHKVDGRVVEPKRAVSREDSQTLDAHLTVKKIFVGGIKENT-EDHLRDYF-EYGKIEVIE 132
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
IM D + + RGF F+TFD +VD ++ K + + G EV+KA K+
Sbjct: 133 IMTDRGSGKKRGFTFVTFDDHDSVDKIIQKYHTVN--GHNCEVRKALSKQ 180
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 39 IKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIP 98
++ + +YG+I IM DR +G+ RGF FVT+ D VDK+I+ H +NG E+++ +
Sbjct: 119 LRDYFEYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQKYHTVNGHNCEVRKALS 178
Query: 99 KGAVGS 104
K + S
Sbjct: 179 KQEMAS 184
Score = 128 (50.1 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F ++G + +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 QKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE K+A
Sbjct: 73 ARPHKVD--GRVVEPKRA 88
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 61/176 (34%), Positives = 93/176 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 16 GLSFE-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 71
Query: 84 -HIINGKQVEIKRTIP-KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 141
H ++G+ VE KR + + + + KIFVG I E +D+F Q+G + +I
Sbjct: 72 PHKVDGRVVEPKRAVSIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEI 131
Query: 142 MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPS 197
+ D + + RGF F+TFD +VD ++ + + G EV+KA P K + S
Sbjct: 132 VTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHT-VNGHNCEVRKA-PSKQEMASAS 185
Score = 144 (55.7 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 8 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 67
Query: 168 L-AKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 68 MNARPHKVD--GRVVEPKRA 85
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 57/153 (37%), Positives = 82/153 (53%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF + G +TD V+M+D T + RGFGFVTY VD + H ++G+ VE KRT K
Sbjct: 33 HFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVDGRVVEPKRTSSK 92
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
KKIF GGI E +D+F Q+G ++ +IM D + + RGF F+T
Sbjct: 93 EDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
FD +VD ++ + + G EV+KA K+
Sbjct: 153 FDDHDSVDKIVIQKYHT-VNGHNWEVRKALSKQ 184
Score = 130 (50.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG ++ + F Q G + + +MRD +T RSRGFGF+T+ + VD +
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 169 AKGNKLELAGAQVEVKKAEPKK 190
A+ +K++ G VE K+ K+
Sbjct: 74 ARPHKVD--GRVVEPKRTSSKE 93
Score = 127 (49.8 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 99
+F +YG+I IM DR +G+ RGF FVT+ D VDK VI+ H +NG E+++ + K
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSK 183
Query: 100 GAVGS 104
+ S
Sbjct: 184 QEMAS 188
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 173 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 232 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 261
Score = 142 (55.0 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 158 KEHKLN--GKVIDPKRAKAMKTKEP 180
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 56/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 20 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 76
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 77 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 135
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 136 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 165
Score = 142 (55.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 62 KEHKLN--GKVIDPKRAKAMKTKEP 84
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 59/170 (34%), Positives = 90/170 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + H K+G +TD V+M D +T RGFGFVTY+ VD +
Sbjct: 5 GLSFE-TTDDSLRE---HSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 61 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 120
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+M D + + RGF F+TFD VD ++ + + + EVKKA K+
Sbjct: 121 VMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHA-INRHNCEVKKAVSKQ 169
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 217 (81.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 49/137 (35%), Positives = 75/137 (54%)
Query: 54 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTK 110
M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G K
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 60
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LA 169
K+FVGGI E +D+F ++G + +I+ D + + RGFGF+TFD VD + L
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 170 KGNKLELAGAQVEVKKA 186
K + + G EV+KA
Sbjct: 121 KYHTIN--GHNAEVRKA 135
Score = 131 (51.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F +YG+I I+ DR++G+ RGFGFVT+ D VDK++ + H ING E+++ + +
Sbjct: 79 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 138
Score = 44 (20.5 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
GY + GG+ GYD G
Sbjct: 223 GYGNQGGGYGGGYDNYG 239
Score = 38 (18.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 280 PSSLGYSGRYGGFNR 294
P G SG YGG +R
Sbjct: 286 PGGSGGSGGYGGRSR 300
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 55/152 (36%), Positives = 91/152 (59%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+G++ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 114 YFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 170
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 171 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 229
Query: 160 TEQAVDDLLAKGNKLELAG-AQVEVKKAEPKK 190
E+ V ++ K K G ++ E+K A K+
Sbjct: 230 EEEPVKKIMEK--KYHNVGLSKCEIKVAMSKE 259
Score = 146 (56.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLP 194
K +KL G ++ K+A+ K P
Sbjct: 156 KEHKLN--GKVIDPKRAKAMKTKEP 178
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 62/180 (34%), Positives = 93/180 (51%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 13 GLSFK-TTDESLRS---HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVG E +D+F Q+G ++ +
Sbjct: 69 PHKVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVG---EDTEEHHLRDYFEQYGKIEVIE 125
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
IM D + + RGF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 126 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 184
Score = 141 (54.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 170 KGNKLELAGAQVEVKKA 186
+ +K++ G VE K+A
Sbjct: 68 RPHKVD--GRVVEPKRA 82
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 47/131 (35%), Positives = 80/131 (61%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 19 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 73
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F +FG+++ ++ D +++ RGF FITF
Sbjct: 74 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK 133
Query: 160 TEQAVDDLLAK 170
E+ V +L K
Sbjct: 134 EEEPVKKVLEK 144
Score = 141 (54.7 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++L+ G ++ KKA K
Sbjct: 61 KEHRLD--GRVIDPKKAMAMK 79
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 220 (82.5 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 49/146 (33%), Positives = 82/146 (56%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
++ ++G++TD V+++D + + RGFGFV ++ + VD + H I+G+ V KR +P+
Sbjct: 40 YYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPR 99
Query: 100 GAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
G TKK+FVGGI E +D+F ++G + +I+R + R FGF+T
Sbjct: 100 EESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVT 157
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVE 182
FD VD + L K + + AQ+E
Sbjct: 158 FDDHDPVDKIVLQKYHTINGHHAQLE 183
Score = 137 (53.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ S E+ ++++ Q+G + + ++RD S+ RSRGFGF+ F + VD +A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
+ G V K+ P++
Sbjct: 81 -ARPHSIDGRVVASKRVVPRE 100
Score = 38 (18.4 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 284 GYSGRYGGFNRGY 296
GY G YG GY
Sbjct: 265 GYGGGYGDRGAGY 277
Score = 36 (17.7 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 284 GYSGRYGGFNRGY 296
GYS GF GY
Sbjct: 276 GYSNLSSGFGDGY 288
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 220 (82.5 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 49/146 (33%), Positives = 82/146 (56%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
++ ++G++TD V+++D + + RGFGFV ++ + VD + H I+G+ V KR +P+
Sbjct: 40 YYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPR 99
Query: 100 GAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
G TKK+FVGGI E +D+F ++G + +I+R + R FGF+T
Sbjct: 100 EESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVT 157
Query: 158 FDTEQAVDDL-LAKGNKLELAGAQVE 182
FD VD + L K + + AQ+E
Sbjct: 158 FDDHDPVDKIVLQKYHTINGHHAQLE 183
Score = 137 (53.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ S E+ ++++ Q+G + + ++RD S+ RSRGFGF+ F + VD +A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
+ G V K+ P++
Sbjct: 81 -ARPHSIDGRVVASKRVVPRE 100
Score = 38 (18.4 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 284 GYSGRYGGFNRGY 296
GY G YG GY
Sbjct: 265 GYGGGYGDRGAGY 277
Score = 36 (17.7 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 284 GYSGRYGGFNRGY 296
GYS GF GY
Sbjct: 276 GYSNLSSGFGDGY 288
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 63/181 (34%), Positives = 92/181 (50%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V+M D T + RGFGFVTY VD +
Sbjct: 29 GLSFE-TTDESLRS---HFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMNAR 83
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +
Sbjct: 84 PQKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 143
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAEPKKPNLPQPSYR 199
IM D + + RGF F+TFD +VD ++ + K G EV+KA K+ S +
Sbjct: 144 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ--KYHTGNGHNCEVRKALSKQEMASASSSQ 201
Query: 200 R 200
R
Sbjct: 202 R 202
Score = 128 (50.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + + +M D +T RSRGFGF+T+ T + VD +
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ K++ G VE K+A
Sbjct: 82 ARPQKMD--GRVVEPKRA 97
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 217 (81.4 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 51/160 (31%), Positives = 81/160 (50%)
Query: 44 KYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK--G 100
K+G +TD V+M+D T RGF F+TYA VD + H ++ + VE+K+ + +
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 160
KKIFVGGI + +D+F +G ++ +IM D + R F F+TFD
Sbjct: 62 QRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDA 121
Query: 161 EQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
+VD ++ + + G EV+KA K+ S +R
Sbjct: 122 HDSVDKIVIQKYHT-VNGHNCEVRKALLKQEMASASSSQR 160
Score = 112 (44.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 35 LAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEI 93
L + +H+GK E+ + IM DR +G R F FVT+ VDK VI+ H +NG E+
Sbjct: 87 LRDYFEHYGKI-EVIE--IMTDRGSGNKRSFAFVTFDAHDSVDKIVIQKYHTVNGHNCEV 143
Query: 94 KRTIPKGAVGS 104
++ + K + S
Sbjct: 144 RKALLKQEMAS 154
Score = 36 (17.7 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 281 SSLGYSGRYGGFNRG 295
S G SG Y +N G
Sbjct: 233 SGYGGSGSYDSYNNG 247
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 220 (82.5 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 58/170 (34%), Positives = 87/170 (51%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K G +TD V+M+D +T RGFGFVT + VD +
Sbjct: 42 GLSFE-TTDDSLRE---HFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G +
Sbjct: 98 PHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKTET-- 155
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
I + RGF F+TFD + VD ++ + + + G EVK+A K+
Sbjct: 156 IEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHT-INGHNCEVKRALSKQ 204
Score = 127 (49.8 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F + G + + +MRD T SRGFGF+T + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 96 ARPHKVD--GRVVEPKRAVSREDSV 118
Score = 38 (18.4 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 284 GYSGRYGGFNRGYDVTGD 301
GY G GG Y +GD
Sbjct: 234 GYGGGGGGSRGSYGGSGD 251
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 220 (82.5 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 58/170 (34%), Positives = 87/170 (51%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K G +TD V+M+D +T RGFGFVT + VD +
Sbjct: 42 GLSFE-TTDDSLRE---HFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G +
Sbjct: 98 PHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKTET-- 155
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
I + RGF F+TFD + VD ++ + + + G EVK+A K+
Sbjct: 156 IEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHT-INGHNCEVKRALSKQ 204
Score = 127 (49.8 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F + G + + +MRD T SRGFGF+T + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ +K++ G VE K+A ++ ++
Sbjct: 96 ARPHKVD--GRVVEPKRAVSREDSV 118
Score = 38 (18.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 284 GYSGRYGGFNRGYDVTGD 301
GY G GG Y +GD
Sbjct: 234 GYGGGGGGSRGSYGGSGD 251
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 60/179 (33%), Positives = 91/179 (50%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L HF ++G TD V+M+D T + RG GF+ YA VD +
Sbjct: 20 GLSFE-TTEESLRS---HFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNAR 75
Query: 84 HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 141
++G+ VE KR + + KKIFVGGI E +D+F Q+G ++ +I
Sbjct: 76 PHVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 135
Query: 142 MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
M D + + +GF F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 136 MTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYH-PVNGHSCEVRKALSKQEMASASSTQR 192
Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ E+ + F Q+G + +MRD +T RSRG GF+ + T + VD A
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVD--AAM 72
Query: 171 GNKLELAGAQVEVKKA 186
+ + G VE K+A
Sbjct: 73 NARPHVDGRVVEPKRA 88
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 58/163 (35%), Positives = 87/163 (53%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF ++G +T+ V+M+D T + RGFGFVTYA VD + H ++G+ VE P+
Sbjct: 33 HFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE-----PE 87
Query: 100 GAVGSKDFK--TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
AV +D T KIFVGGI E +D+ Q+G ++ +IM D + + RGF F+T
Sbjct: 88 RAVSREDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVT 147
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
FD +VD ++ + K V+KA K+ S +R
Sbjct: 148 FDDYDSVDKIVIR--KYHTVNDHNCVRKALSKQEMASASSSQR 188
Score = 142 (55.0 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ ++ + F Q+G + E +MRD +T RSRGFGF+T+ T + VD +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G VE ++A
Sbjct: 74 ARPHKVD--GRVVEPERA 89
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 57/167 (34%), Positives = 88/167 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D + RGF FVTY+ V V+
Sbjct: 43 GLSFE-TTDGSLRE---HFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCAR 98
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H + G VE KR + + + +KIFVGGI E +D+F ++G ++ +
Sbjct: 99 PHKVVGCVVEPKRAVSREDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 158
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187
+M D + + RGF F+TFD VD ++ K + + G EVK+ E
Sbjct: 159 VMEDRQSGKKRGFAFVTFDNHDTVDKVVQKYHTVN--GHNCEVKEQE 203
Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
Identities = 28/110 (25%), Positives = 59/110 (53%)
Query: 88 GKQVEIKRTIPKGAVG---SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144
G++ E +R +G G + + +K+F+GG+ + ++ F ++G + + +MRD
Sbjct: 12 GREGERERERGRGMEGHDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRD 71
Query: 145 HSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKAEPKKPNL 193
SRGF F+T+ + V ++ A+ +K+ G VE K+A ++ ++
Sbjct: 72 PQRKCSRGFSFVTYSCVEEVGAVMCARPHKV--VGCVVEPKRAVSREDSI 119
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 53/152 (34%), Positives = 81/152 (53%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK- 99
HF ++G + D V+M+D T RGFGFVTYA VD +H ++G+ VE KR + +
Sbjct: 33 HFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAA--RSHKVDGRVVEPKRAVSRE 90
Query: 100 -GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+KIFVGGI E +D+F Q+G ++ +IM D + + RGF +TF
Sbjct: 91 DSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTF 150
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
D D ++ + + + G EV+KA K+
Sbjct: 151 DDHDK-DKIVIQKYYI-VNGHNCEVRKALSKQ 180
Score = 135 (52.6 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ + + F Q+G +++ +MRD +T SRGFGF+T+ T + VD A
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD--AA 71
Query: 170 KGNKLELAGAQVEVKKA 186
+ +K++ G VE K+A
Sbjct: 72 RSHKVD--GRVVEPKRA 86
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 54/155 (34%), Positives = 83/155 (53%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFV-TYADPSVVDKVI-EDTHIINGKQVEIKRTI 97
+HF K+G + D V+M+D + + R FGFV TY+ VD + H ++G VE KR +
Sbjct: 36 EHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYSCVKEVDAAMCARPHKVDGHVVEPKRAV 94
Query: 98 PK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ KKIFVGGI E +D+F ++G ++ ++M D + + RGF F
Sbjct: 95 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAF 154
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+TFD VD ++ K + + G EVKKA K+
Sbjct: 155 VTFDDHDTVDKIVQKYHTIN--GHNYEVKKAVSKQ 187
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 51/147 (34%), Positives = 84/147 (57%)
Query: 45 YGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVG 103
+GE+ D +I D TG+ RGFGFV + + + VDKV+E H ++ ++ PK A
Sbjct: 34 FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLELKEHKLDSMLID-----PKRAKA 88
Query: 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQA 163
K+ KK+FVGG+ E++ K++ FG+++ ++ D T+ RGF FIT+ E+
Sbjct: 89 LKE-PPKKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKP 147
Query: 164 VDDLLAKGNKLELAGAQVEVKKAEPKK 190
V LL + ++ + E+K AEPK+
Sbjct: 148 VKKLL-ENRYHQIGSGKCEIKVAEPKE 173
Score = 110 (43.8 bits), Expect = 0.00050, P = 0.00050
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKR 95
Q ++ G +GEI + + D KT + RGF F+TY D V K++E+ H I + EIK
Sbjct: 109 QIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLENRYHQIGSGKCEIKV 168
Query: 96 TIPK 99
PK
Sbjct: 169 AEPK 172
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 63/181 (34%), Positives = 90/181 (49%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS + T+ +L H + G + D V+M+D T RGFGF TYA VD V+
Sbjct: 20 GLS-SKTTDESLRS---HCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNAR 75
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKD-FFMQFGDVQEH 139
H ++G+ VE KR + + KKIFVGGI E KD FF Q+ ++
Sbjct: 76 PHKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEVI 135
Query: 140 QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 199
+IM D + + RGF F+TFD VD ++ + + G EV+KA K+ S +
Sbjct: 136 EIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCH-PVNGHDHEVRKALSKQEMASASSSQ 194
Query: 200 R 200
R
Sbjct: 195 R 195
Score = 122 (48.0 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+ G+ S ++ + Q G + + +MRD +T SRGFGF T+ T + VD ++ A
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 170 KGNKLELAGAQVEVKKA 186
+ +K++ G VE K+A
Sbjct: 75 RPHKMD--GRVVEPKRA 89
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 58/166 (34%), Positives = 90/166 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +T V+M+D T + RGFGFV +A VD +
Sbjct: 20 GLSFE-TTDESLRS---HFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNAR 75
Query: 84 -HIINGKQVEIKRTIPK-GAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
+ +NG+ +E KR + + + + T KKIFVGGI E E D+F Q+G + +
Sbjct: 76 PNKVNGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKEDTEEHE--DYFEQYGKFEVIE 133
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+M D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 134 VMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHT-VNGHSCEVRKA 178
Score = 122 (48.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+ G+ ++ + F Q+G + +MRD +T RSRGFGF+ F T + VD + A
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 170 KGNKLELAGAQVEVKK 185
+ NK+ G +E K+
Sbjct: 75 RPNKVN--GRVLEPKR 88
Score = 115 (45.5 bits), Expect = 0.00018, P = 0.00018
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 99
+F +YG+ +M D+ +G+ RGF FVT+ + VD+ VI+ H +NG E+++ + K
Sbjct: 122 YFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKALLK 181
Query: 100 GAVGSKDFKTK 110
+ S F +
Sbjct: 182 QEMASASFSQR 192
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 230 (86.0 bits), Expect = 9.4e-19, P = 9.4e-19
Identities = 60/188 (31%), Positives = 93/188 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +FG +GE+ + +D KTG +GFGFV + D K
Sbjct: 107 QKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSK 166
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVG-SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 137
V+ H+I+G+ + K +P G + +++K+FVG + DE + FFMQ+G+V
Sbjct: 167 VMTQRHMIDGRWCDCK--LPNSKQGIDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVT 224
Query: 138 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPS 197
+ I + R F F+TF +Q L G L + G V + AEPK N Q
Sbjct: 225 DVFIPKPF-----RAFAFVTFADDQVAAALC--GEDLIIKGVSVHISNAEPKHNNTRQMM 277
Query: 198 YR--RYNN 203
R R+ N
Sbjct: 278 ERAGRFGN 285
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 165
D KT + V G+P +E + KD+F FG+V Q+ RD T S+GFGF+ F +
Sbjct: 106 DQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQS 165
Query: 166 DLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
++ + + ++ G + K K+ + +P R
Sbjct: 166 KVMTQRHMID--GRWCDCKLPNSKQ-GIDEPMRSR 197
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 51/151 (33%), Positives = 81/151 (53%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+G +TD V+M+D +T + R F FVTY+ VD +
Sbjct: 19 GLSFE-ATDDSLRE---HFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQ 74
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G+ VE KR + + KKIFVGGI E +D+F ++G ++ +
Sbjct: 75 PHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTME 134
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171
+M D + + R F+TFD VD ++ +G
Sbjct: 135 VMEDRLSGKERLL-FVTFDDHDTVDKIVGRG 164
Score = 122 (48.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 25/85 (29%), Positives = 50/85 (58%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ +D ++ F ++G + + +MRD T RSR F F+T+ + VD +
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 169 AKGNKLELAGAQVEVKKAEPKKPNL 193
A+ + ++ G VE K+A ++ ++
Sbjct: 73 AQPHNVD--GRVVEPKRAVSREDSV 95
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 62/179 (34%), Positives = 90/179 (50%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS E +L+ HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFEATLE-SLS-LTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 77
Query: 84 -HIINGKQVEIKRTIPKGAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 141
H + G+ VE KR K + T KKIFVGG+ E +D+ Q G + +I
Sbjct: 78 PHKVGGRAVEPKRAGSKDSQRPGAHLTMKKIFVGGVKEDTEEHRLRDYLEQNGKTEVTEI 137
Query: 142 MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
D + + R F F+TFD +VD ++ + + G EV+KA K+ S +R
Sbjct: 138 TTDRGSGK-RDFAFVTFDN--SVDKIVIQKYST-VNGHNCEVRKALSKQEMASASSSQR 192
Score = 141 (54.7 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 110 KKIFVGGIP--SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+K+FVGG+ +++ F Q+G + +H +MRD +T RSRGFGF+T+ T + VD
Sbjct: 14 QKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAA 73
Query: 168 L-AKGNKLELAGAQVEVKKAEPKKPNLP 194
+ A+ +K+ G VE K+A K P
Sbjct: 74 MNARPHKV--GGRAVEPKRAGSKDSQRP 99
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 53/151 (35%), Positives = 83/151 (54%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS T+ +L + HF K+ +TD V+M+D +T + RGFGFV Y+ VD +
Sbjct: 19 GLSFE-TTDDSLRE---HF-KWDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMCAR 72
Query: 83 THIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G VE KR I + KKIFVGGI E +D+F ++G+++ +
Sbjct: 73 PHKVDGHVVEPKRAISREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYF-EYGNIKTIE 131
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171
++ D + + RGF F+TFD VD ++ +G
Sbjct: 132 VVEDRQSGKKRGFAFLTFDDHDTVDKIVGRG 162
Score = 113 (44.8 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ +D ++ F ++ + + +MRD T RSRGFGF+ E+ + A
Sbjct: 13 RKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFVYSCVEEVDAAMCA 71
Query: 170 KGNKLELAGAQVEVKKA 186
+ +K++ G VE K+A
Sbjct: 72 RPHKVD--GHVVEPKRA 86
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 204 (76.9 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 55/154 (35%), Positives = 83/154 (53%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
+HF K G +TD V+M+D +T RGFGFVTY+ VD + H ++G+ VE K+ +
Sbjct: 50 EHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCAWLHKVDGRVVEPKKAVS 109
Query: 99 KG---AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ +G+ KK FVGGI E KD+F ++G + E + M + + R RGF F
Sbjct: 110 REDSVKLGAH-LMVKKTFVGGIKEDTEEYNLKDYFEKYGKI-ETEGMENRQSGR-RGFAF 166
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
F + VD ++ + + + G EVKKA K
Sbjct: 167 AIFG-DHDVDKIVVQKHHT-INGHNCEVKKALSK 198
Score = 128 (50.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 29/96 (30%), Positives = 54/96 (56%)
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+GA + + +K+F+GG+ +D ++ F + G + + +MRD T SRGFGF+T+
Sbjct: 21 RGADPKEPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTY 80
Query: 159 DTEQAVDDLLAKG-NKLELAGAQVEVKKAEPKKPNL 193
+ VD + +K++ G VE KKA ++ ++
Sbjct: 81 SCVEEVDAAMCAWLHKVD--GRVVEPKKAVSREDSV 114
Score = 38 (18.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 284 GYSGRYGGFNRGYD-VTGD 301
G G +GG + GY+ V GD
Sbjct: 236 GSRGSFGGGDGGYNGVGGD 254
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 52/152 (34%), Positives = 81/152 (53%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK- 99
HF ++G +TD V+M+D T + RGFGFVTYA VD+ +D H +++ R + +
Sbjct: 40 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVDR--KD-HTRWMEELWNLRAVSRE 96
Query: 100 -GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
KKIFVGGI E +D+ Q+G ++ +IM D + + GF F+TF
Sbjct: 97 DSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTF 156
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
D +VD ++ + + G EV+KA K+
Sbjct: 157 DDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQ 187
Score = 123 (48.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 44 KYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGAV 102
+YG+I IM DR +G+ GF FVT+ D VDK VI+ H +NG E+++ + K +
Sbjct: 130 QYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 189
Query: 103 GSKDFKTKKIFVGGIPSSVNEDEFKDF 129
S F + G S N ++F ++
Sbjct: 190 ASASFSQR-----GRSGSRNYNDFGNY 211
Score = 120 (47.3 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 165
+K+F GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ + VD
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVD 76
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 54/172 (31%), Positives = 86/172 (50%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 137
V+ H+I+G+ + K +P + +++K+FVG + EDE ++FF Q+GDV
Sbjct: 161 VMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVM 218
Query: 138 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
+ I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 219 DVFIPKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 54/172 (31%), Positives = 86/172 (50%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 137
V+ H+I+G+ + K +P + +++K+FVG + EDE ++FF Q+GDV
Sbjct: 161 VMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVM 218
Query: 138 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
+ I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 219 DVFIPKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 51/147 (34%), Positives = 79/147 (53%)
Query: 46 GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK-GAVG 103
G + D V+M+D P+ FGFVTY+ VD + H ++G+ VE KR + + +V
Sbjct: 30 GTLADCVVMRD-----PQSFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVK 84
Query: 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQA 163
T KIFVGGI E +D+F ++G ++ ++M D + + RGF F+TFD
Sbjct: 85 PGAHLTVKIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDT 144
Query: 164 VDDLLAKGNKLELAGAQVEVKKAEPKK 190
VD ++ N + G EV+KA K+
Sbjct: 145 VDKIVV--NYHTINGHNCEVRKALSKQ 169
Score = 145 (56.1 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
+F KYG+I +M+DR++G+ RGF FVT+ D VDK++ + H ING E+++ + K
Sbjct: 110 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVNYHTINGHNCEVRKALSK 168
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 60/185 (32%), Positives = 94/185 (50%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++ +TD V+M+D + + RGFG + YA VD +
Sbjct: 6 GLSFE-TTDKSLRS---HFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNAR 61
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGG E + +F Q+G
Sbjct: 62 PHKVDGRVVE-----PKVAVSREDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGK 116
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQ 195
++ +IM D + + RGF F+TFD + +VD+++ + + G EV+KA K+
Sbjct: 117 IEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHT-VNGHNCEVRKALLKQEMASA 175
Query: 196 PSYRR 200
S +R
Sbjct: 176 SSSQR 180
Score = 111 (44.1 bits), Expect = 0.00036, P = 0.00036
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ + + F Q+ + + +MRD ++ RSRGFG I + T + VD + A
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 170 KGNKLELAGAQVEVKKA 186
+ +K++ G VE K A
Sbjct: 61 RPHKVD--GRVVEPKVA 75
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 50/133 (37%), Positives = 79/133 (59%)
Query: 5 LTEILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRG 64
LT +LT + ++ + GLS T P + +F K+GEI + ++M+D T + RG
Sbjct: 4 LTSVLTSVMFSPSSKMFIGGLSWQ--TSPDSLR--DYFSKFGEIRECMVMRDPTTKRSRG 59
Query: 65 FGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNE 123
FGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ ++
Sbjct: 60 FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 119
Query: 124 DEFKDFFMQFGDV 136
++ K +F QFG V
Sbjct: 120 EDVKQYFEQFGKV 132
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/82 (37%), Positives = 53/82 (64%)
Query: 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168
+ K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 169 AKGNKLELAGAQVEVKKAEPKK 190
+ + EL ++ K A P++
Sbjct: 76 GQPHH-ELDSKTIDPKVAFPRR 96
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 54/153 (35%), Positives = 90/153 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGFV D + V+K+++ H +NG ++ P+
Sbjct: 91 YFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVID-----PE 145
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
A K+ KKIFVG P + ++ +DF +FG+++ ++ D +++ RGF FITF
Sbjct: 146 KAKVMKNDPVKKIFVGLNPEATEKN--RDFG-EFGEIEAIELPMDPKSNKRRGFVFITFK 202
Query: 159 DTEQAVDDLLAKGNKLE-LAGAQVEVKKAEPKK 190
+ E+ V +L K K ++G + E+K A+PK+
Sbjct: 203 EEEEPVKKVLEK--KFHTISGRKCEIKVAQPKE 233
Score = 119 (46.9 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 104 SKDFKTK-KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 162
SK+ + + K+FVG + S + + K++F +FG+V + I D +T RSRGFGF+
Sbjct: 65 SKNVEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAA 124
Query: 163 AVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+V+ +L + + L G ++ +KA+ K
Sbjct: 125 SVEKILDQ-KEHRLNGDVIDPEKAKVMK 151
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 55/179 (30%), Positives = 88/179 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +FG +GE+ + +D K+G +GFGFV + D K
Sbjct: 102 QKTSDLIVLGLPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQIK 161
Query: 79 VIEDTHIINGKQVEIKRTIPK----GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG 134
V+ H+I+G+ + K K A + +++K+FVG + DE + FFMQ+G
Sbjct: 162 VMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYG 221
Query: 135 DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+V + I + R F F+TF +Q L G L + G V + AEPK N+
Sbjct: 222 EVTDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGTSVHISNAEPKHNNI 273
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 222 (83.2 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 63/182 (34%), Positives = 93/182 (51%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T T L F F ++G + D+V+++D + RGFGFVTY DP V+ V
Sbjct: 38 GLS-TQTTVETLRGF---FSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRAR 93
Query: 84 -HIINGKQVEIKRTIPK------GAVGSK--DF-------KTKKIFVGGIPSSVNEDEFK 127
H I+ K VE K +P+ G VGS F +K+IF+GG+ +E+ +
Sbjct: 94 PHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVR 153
Query: 128 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187
++F QFG V +++ D T R R FGF+ F + + LA K + VEVK++
Sbjct: 154 EYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAP-RKHWILQTLVEVKRST 212
Query: 188 PK 189
K
Sbjct: 213 QK 214
Score = 133 (51.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 28/93 (30%), Positives = 54/93 (58%)
Query: 99 KGAVGSKDFK-TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
K A+ + ++ +KIF+GG+ + + + FF QFG V + ++RD ++ SRGFGF+T
Sbjct: 20 KTAIKEEGYEHLRKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVT 79
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+ ++V+ ++ + + VE K A P++
Sbjct: 80 YVDPKSVE-IVQRARPHTIDNKIVETKHALPRQ 111
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 191 (72.3 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 54/154 (35%), Positives = 78/154 (50%)
Query: 51 SVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK-GAVGSKDFK 108
S +M D T RGF FVTYA VD + H ++ + VE KR + + G+
Sbjct: 39 SCVMTDPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRPGAHL 98
Query: 109 T-KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD- 166
T KKIF GGI E +D+F G ++ +IM D S+ + RGF F+TFD +VD
Sbjct: 99 TVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKT 158
Query: 167 LLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
++ K + + G EV+KA K+ S +R
Sbjct: 159 VIQKYHTVN--GHNREVRKALSKQEMASASSSQR 190
Score = 112 (44.5 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 99
+F G+I IM D +G+ RGF FVT+ D VDK VI+ H +NG E+++ + K
Sbjct: 120 YFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRKALSK 179
Query: 100 GAVGS 104
+ S
Sbjct: 180 QEMAS 184
Score = 41 (19.5 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 287 GRYGGFNRGYDVTGD 301
GRYGG GY+ G+
Sbjct: 226 GRYGGGGDGYNGFGN 240
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 60/182 (32%), Positives = 91/182 (50%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSV--VDKVIE 81
GLSL +T +L H ++G +TD V+ +D T RGFGF+T +V VD +
Sbjct: 20 GLSLE-ITNESLRS---HSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAAMN 75
Query: 82 DT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
H ++G+ VE KR + + KK FVGGI E +D+F Q+G ++
Sbjct: 76 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEV 135
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSY 198
+IM D + + R F F+TFD +VD ++ + + G EVKKA K+ S
Sbjct: 136 IEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVKKALSKQEQTSVSSS 193
Query: 199 RR 200
+R
Sbjct: 194 QR 195
Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 104 SKD-FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE- 161
SKD + +K+F+GG+ + + + Q+G + + + RD +T SRGFGFIT T
Sbjct: 7 SKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTAT 66
Query: 162 -QAVDDLL-AKGNKLELAGAQVEVKKA 186
+ VD + A+ +K++ G VE K+A
Sbjct: 67 VEEVDAAMNARPHKVD--GRVVEPKRA 91
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 49/136 (36%), Positives = 78/136 (57%)
Query: 72 DPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F
Sbjct: 2 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 61
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
QFG V + +M D +T+R RGFGF+TF++E V+ + + + E+ VE KKA+PK+
Sbjct: 62 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIHFHEINNKMVECKKAQPKE 120
Query: 191 PNLPQPSYRRYNNPKP 206
P S R + P
Sbjct: 121 VMSPTGSARGRSRVMP 136
Score = 143 (55.4 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS+ E + Q+ + FGK + D+++M D+ T + RGFGFVT+
Sbjct: 38 TRTKKIFVGGLSVNTTVED-VKQYFEQFGK---VDDAMLMFDKTTNRHRGFGFVTFESED 93
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPK 99
+V+KV E H IN K VE K+ PK
Sbjct: 94 IVEKVCEIHFHEINNKMVECKKAQPK 119
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 54/172 (31%), Positives = 86/172 (50%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 137
V+ H+I+G+ + K +P + +++K+FVG + EDE ++FF Q+GDV
Sbjct: 161 VMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVM 218
Query: 138 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
+ I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 219 DVFIPKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 191 (72.3 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 45/135 (33%), Positives = 68/135 (50%)
Query: 59 TGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVG 115
T + RGFGFVT VD + H ++G+ VE KR + + D KKIFVG
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRPDAHLTVKKIFVG 60
Query: 116 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 175
I E +D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ +
Sbjct: 61 SIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHTV 120
Query: 176 LAGAQVEVKKAEPKK 190
+ EV+K K+
Sbjct: 121 NGHHKCEVRKPLSKQ 135
Score = 115 (45.5 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGK-QVEIKRTIP 98
+F +YG+I IM DR + + RGF FVT+ D VDK++ + H +NG + E+++ +
Sbjct: 74 YFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQKYHTVNGHHKCEVRKPLS 133
Query: 99 KGAVGSKDFKTK 110
K + S F +
Sbjct: 134 KQEMASASFSQR 145
Score = 36 (17.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 281 SSLGYSGRYGGFNRG 295
S G SG Y +N G
Sbjct: 173 SGYGGSGSYDSYNNG 187
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 190 (71.9 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 47/139 (33%), Positives = 69/139 (49%)
Query: 54 MKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKK 111
M+D KT + RGFGFVTY+ VD + + + VE KR + + KK
Sbjct: 1 MRDPKTKRSRGFGFVTYSCVEEVDAAMYARP--HKRVVEPKRAVSREDSVKPGAHLTVKK 58
Query: 112 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171
IFVGGI E +D F +G ++ ++M D + + RG F+TFD VD ++ +
Sbjct: 59 IFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQK 118
Query: 172 NKLELAGAQVEVKKAEPKK 190
+ G EVKKA K+
Sbjct: 119 YHT-INGHNCEVKKALSKQ 136
Score = 127 (49.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 42 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 99
F YG+I +M+DR++G+ RG FVT+ D VDK V++ H ING E+K+ + K
Sbjct: 77 FENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 135
Score = 39 (18.8 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 280 PSSLG-YSGRYGGFNRGYD 297
P G G YGG GYD
Sbjct: 225 PGGYGNQGGGYGGGGGGYD 243
Score = 38 (18.4 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G G YGG + GY+ G
Sbjct: 186 GSRGSYGGGDGGYNGFG 202
Score = 36 (17.7 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 284 GYSGRYGGFNRGYDVTGD 301
G G Y G+N G + G+
Sbjct: 237 GGGGGYDGYNEGGNFGGN 254
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 215 (80.7 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 58/181 (32%), Positives = 92/181 (50%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K
Sbjct: 54 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++++ E + F Q+G + +I+ D +T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNN 203
I FD E+A+ L G K A + VK A P + +L Q S RRY
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
Query: 204 P 204
P
Sbjct: 229 P 229
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 215 (80.7 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 58/181 (32%), Positives = 92/181 (50%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K
Sbjct: 54 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++++ E + F Q+G + +I+ D +T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNN 203
I FD E+A+ L G K A + VK A P + +L Q S RRY
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
Query: 204 P 204
P
Sbjct: 229 P 229
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 51/155 (32%), Positives = 76/155 (49%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEIKRTIPK 99
HF +YGE+ + + DR G+ RGF FV + + I GK VE+K P
Sbjct: 48 HFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVK---P- 103
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
+K + KK+FVGG+PS +E + + F QFG V + + D T R F FI F+
Sbjct: 104 ----AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFE 159
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
E++ D ++ K + +VKKA P+ P
Sbjct: 160 EEESADKASSQ-TKQTFGTRECDVKKAVPQGKRFP 193
Score = 164 (62.8 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/105 (37%), Positives = 56/105 (53%)
Query: 86 INGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
ING E TI + +K + KKIFVGGI VN ++ F Q+G+V + Q+ D
Sbjct: 8 INGNASE---TIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDR 64
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+ RSRGF F+ F T + LA + + G VEVK A+ ++
Sbjct: 65 TNGRSRGFAFVEFTTGEGCKLALA-AREQTIKGKSVEVKPAKSRE 108
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 211 (79.3 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 58/181 (32%), Positives = 91/181 (50%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K
Sbjct: 54 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++++ E + F Q+G + +I+ D T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNN 203
I FD E+A+ L G K A + VK A P + +L Q S RRY
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
Query: 204 P 204
P
Sbjct: 229 P 229
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 211 (79.3 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 58/181 (32%), Positives = 91/181 (50%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K
Sbjct: 54 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++++ E + F Q+G + +I+ D T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNN 203
I FD E+A+ L G K A + VK A P + +L Q S RRY
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
Query: 204 P 204
P
Sbjct: 229 P 229
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 211 (79.3 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 58/181 (32%), Positives = 91/181 (50%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K
Sbjct: 54 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++++ E + F Q+G + +I+ D T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKP-------NLPQPSYRRYNN 203
I FD E+A+ L G K A + VK A P + +L Q S RRY
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
Query: 204 P 204
P
Sbjct: 229 P 229
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 55/165 (33%), Positives = 84/165 (50%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
+HF ++ +T V+M D +T + R FGFVTY+ VD + H ++G VE KR
Sbjct: 31 EHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYSCVKEVDAAMCARPHKVDGCVVEPKRPFR 89
Query: 99 KGAVGSKD-FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR-DHSTSRSRGFGFI 156
+ +V KKIF+GGI E +D+F ++G ++ +IM D + RGF F+
Sbjct: 90 EDSVKPVVCLLAKKIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFV 149
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQ-VEVKKAEPKKPNLPQPSYRR 200
TFD VD ++ + K +VKKA P K +P +R
Sbjct: 150 TFDDHYTVDKIVVQ--KCHTINRHNCDVKKA-PSKQEMPSVRSQR 191
Score = 118 (46.6 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ ++D ++ F Q+ D+ H ++ D T RSR FGF+T+ + VD + A
Sbjct: 14 KLFIGGLSFETSDDSLREHFEQW-DMLTHCVVMDPQTKRSRVFGFVTYSCVKEVDAAMCA 72
Query: 170 KGNKLELAGAQVEVKK 185
+ +K++ G VE K+
Sbjct: 73 RPHKVD--GCVVEPKR 86
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 210 (79.0 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 58/181 (32%), Positives = 90/181 (49%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K
Sbjct: 54 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++++ E + F Q+G + +I+ D T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPN-------LPQPSYRRYNN 203
I FD E+A+ L G K A + VK A P + L Q S RRY
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQSSARRYAG 228
Query: 204 P 204
P
Sbjct: 229 P 229
Score = 134 (52.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
G G+ D + V +P ++ +DEFK F GD++ +++RD T +S G+GF+ +
Sbjct: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D + N L+L ++V A P ++
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 122
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 187 (70.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 49/164 (29%), Positives = 87/164 (53%)
Query: 42 FGKYGEITDSVIMKDRKTGQPRGFGFVTY--ADPSVVDKVIEDTHIINGKQVEIKRTIPK 99
F YG++ +++++ D+ TG+ +G+GFVT+ D +++ + E + I+G+ V + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALL-ALKEPSKKIDGR-VTVTQLAAS 152
Query: 100 G--AVGSK--DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
G GS+ D +KI+V +P + D + FM +GDV+E + D T +SRGF
Sbjct: 153 GNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFAL 212
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA-EPKK---PNLPQ 195
+ T + LA K+ + G + K A + KK P +PQ
Sbjct: 213 FVYKTAEGAQAALADPVKV-IDGKHLNCKLAVDGKKGGKPGMPQ 255
Score = 106 (42.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
D +K+F+ G+ + + + F +GD++E ++ D T +S+G+GF+TF
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 45 (20.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 282 SLGYSGRYGGFNRGYDVTG 300
S GY G YGG+ G TG
Sbjct: 312 SAGYGGHYGGYG-GPGGTG 329
Score = 38 (18.4 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 284 GYSGRYGGFNRGYDVTG 300
G +G YGG GY G
Sbjct: 326 GGTGVYGGLGGGYGGPG 342
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+G+V +
Sbjct: 161 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVD 219
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 220 VFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 43/109 (39%), Positives = 60/109 (55%)
Query: 54 MKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTK 110
M+D T + RGFGFVTYA VD + H ++G+ VE KR + + K
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 60
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
KIFVGGI E +D+F Q+G ++ +IM D + + RGF F+TFD
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 109
Score = 94 (38.1 bits), Expect = 0.00026, P = 0.00026
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 142 MRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKA 186
MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE K+A
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVEPKRA 44
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 34 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVK 93
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+G+V +
Sbjct: 94 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVD 152
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 153 VFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPK 196
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 208 (78.3 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 57/199 (28%), Positives = 93/199 (46%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
I+ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 57 IDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 116
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 117 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 173
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 186
Q+G + +I+ D T SRG GFI FD E+A+ L G K A + VK A
Sbjct: 174 SQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL--NGQKPPAATEPITVKFA 231
Query: 187 EPKKPNLPQPSYRR-YNNP 204
Q + Y++P
Sbjct: 232 NNPSQKTNQAILSQLYHSP 250
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P S+ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 56 PIDSGNTEDSKTNLI-VNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 114
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 115 YVDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 150
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 208 (78.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 53/171 (30%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + D K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+G+V +
Sbjct: 161 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVD 219
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 220 VFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 208 (78.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 53/171 (30%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + D K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+G+V +
Sbjct: 161 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVD 219
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 220 VFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 179 (68.1 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 54/179 (30%), Positives = 84/179 (46%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L HF ++ + V+M+D T + RG GF TY +D +
Sbjct: 21 GLSFR-TTEESLRS---HFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNAR 76
Query: 84 -HIINGKQVEIKRTIPKGAVGSKDFKTKKIF-VGGIPSSVNEDEFKDFFMQFGDVQEHQI 141
H ++G+ V + + GA T KIF V GI E +D+F Q+ ++ +I
Sbjct: 77 PHKVDGRVVSREDSQRPGA-----HLTVKIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEI 131
Query: 142 MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
M D + + R F F+TFD +VD + + + G EV+KA K+ S +R
Sbjct: 132 MTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHT-VNGHNCEVRKALSKQEMASASSSQR 189
Score = 108 (43.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ E+ + F Q+ + +MRD +T RSRG GF T+ T + +D +
Sbjct: 15 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 74
Query: 169 AKGNKLE 175
A+ +K++
Sbjct: 75 ARPHKVD 81
Score = 39 (18.8 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 281 SSLGYSGRYGGFNRGYD 297
S G SG Y +N G D
Sbjct: 222 SGYGGSGSYDSYNNGGD 238
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 204 (76.9 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 62/206 (30%), Positives = 97/206 (47%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
++ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 89 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 186
Q+G + +I+ D T SRG GFI FD E+A+ L G K A + VK A
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL--NGQKPPGATEPITVKFA 203
Query: 187 E-P-KKPN------LPQPSYRRYNNP 204
P +K N L Q RRY P
Sbjct: 204 NNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 30 VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIIN 87
V ALA F + G + S ++ +R T Q RGFGFVT + +K +E ++ +N
Sbjct: 124 VDSQALAML---FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVN 180
Query: 88 GKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143
G+++ + R P+G+ + + +I+VG +P V+ + F + G V + +++
Sbjct: 181 GRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVS 240
Query: 144 DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
D T RSRGFGF+ E V+ +A + L G ++V AE +
Sbjct: 241 DRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 138 (53.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVG +P V+ F Q G V+ +++ + T +SRGFGF+T T + + + K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 171 GNKLELAGAQVEVKKAEPKKPNLPQPSYRRYN 202
N E+ G ++ V +A P+ P+ R Y+
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSR-PERQPRVYD 204
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 59/180 (32%), Positives = 89/180 (49%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L F + G +TD V+ +D + RGFGFVTYA V++V
Sbjct: 20 GLSFE-TTDESLRS---RFEQGGTLTDCVVRRDPNAKRSRGFGFVTYA---TVEEVKGRP 72
Query: 84 HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 141
H+ + + VE K I + KK+FVGGI E +D+F Q+G ++ +I
Sbjct: 73 HV-DERVVEPKWAISREDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEI 131
Query: 142 MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAEPKKPNLPQPSYRR 200
M D + + RGF FI FD ++D ++ + K G EV+KA K+ S +R
Sbjct: 132 MTDQGSGK-RGFAFILFDDHDSIDKIVIQ--KYHTGNGLNCEVRKALSKQEMASASSSQR 188
>UNIPROTKB|B4DJ45 [details] [associations]
symbol:TARDBP "cDNA FLJ58188, highly similar to TAR
DNA-binding protein 43" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP EMBL:AK295920 IPI:IPI00910355
SMR:B4DJ45 STRING:B4DJ45 Ensembl:ENST00000439080 UCSC:uc010oap.2
Uniprot:B4DJ45
Length = 298
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 46/138 (33%), Positives = 71/138 (51%)
Query: 53 IMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKD-FKTKK 111
+ KD KTG +GFGFV + + KV+ H+I+G+ + K +P + +++K
Sbjct: 19 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK--LPNSKQSQDEPLRSRK 76
Query: 112 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171
+FVG + EDE ++FF Q+GDV + I + R F F+TF +Q L G
Sbjct: 77 VFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--G 129
Query: 172 NKLELAGAQVEVKKAEPK 189
L + G V + AEPK
Sbjct: 130 EDLIIKGISVHISNAEPK 147
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 204 (76.9 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 62/206 (30%), Positives = 97/206 (47%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
++ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 89 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 186
Q+G + +I+ D T SRG GFI FD E+A+ L G K A + VK A
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL--NGQKPPGATEPITVKFA 203
Query: 187 E-P-KKPN------LPQPSYRRYNNP 204
P +K N L Q RRY P
Sbjct: 204 NNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 204 (76.9 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 62/206 (30%), Positives = 97/206 (47%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
++ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 89 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 186
Q+G + +I+ D T SRG GFI FD E+A+ L G K A + VK A
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL--NGQKPPGATEPITVKFA 203
Query: 187 E-P-KKPN------LPQPSYRRYNNP 204
P +K N L Q RRY P
Sbjct: 204 NNPSQKTNQAILSQLYQSPNRRYPGP 229
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 205 (77.2 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+G+V +
Sbjct: 161 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVD 219
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 220 VFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 205 (77.2 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+G+V +
Sbjct: 161 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVD 219
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 220 VFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 204 (76.9 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 62/206 (30%), Positives = 97/206 (47%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
++ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 57 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 117 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 173
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 186
Q+G + +I+ D T SRG GFI FD E+A+ L G K A + VK A
Sbjct: 174 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL--NGQKPPGATEPITVKFA 231
Query: 187 E-P-KKPN------LPQPSYRRYNNP 204
P +K N L Q RRY P
Sbjct: 232 NNPSQKTNQAILSQLYQSPNRRYPGP 257
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 56 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 114
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 115 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 150
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 204 (76.9 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 62/206 (30%), Positives = 97/206 (47%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
++ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 58 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 118 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 174
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 186
Q+G + +I+ D T SRG GFI FD E+A+ L G K A + VK A
Sbjct: 175 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL--NGQKPPGATEPITVKFA 232
Query: 187 E-P-KKPN------LPQPSYRRYNNP 204
P +K N L Q RRY P
Sbjct: 233 NNPSQKTNQAILSQLYQSPNRRYPGP 258
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 57 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 115
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 116 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 151
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 204 (76.9 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 62/206 (30%), Positives = 97/206 (47%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
++ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 58 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 118 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 174
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 186
Q+G + +I+ D T SRG GFI FD E+A+ L G K A + VK A
Sbjct: 175 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL--NGQKPPGATEPITVKFA 232
Query: 187 E-P-KKPN------LPQPSYRRYNNP 204
P +K N L Q RRY P
Sbjct: 233 NNPSQKTNQAILSQLYQSPNRRYPGP 258
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 57 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 115
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 116 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 151
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 45/131 (34%), Positives = 68/131 (51%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF ++ +TD V M+D T + RGFGFVTY VD + H ++G VE KR + +
Sbjct: 24 HFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMNARPHKVDGSFVEPKRAVSR 83
Query: 100 GAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
S K+I VGGI E +D+F +G ++ +IM D + + F F+T
Sbjct: 84 EDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGKKE-FAFVT 142
Query: 158 FDTEQAVDDLL 168
FD +VD ++
Sbjct: 143 FDDHDSVDKIV 153
Score = 129 (50.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL- 168
+K+F+GG+ + + F Q+ + + MRD +T RSRGFGF+T+ T + VD +
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 169 AKGNKLELAGAQVEVKKA 186
A+ +K++ G+ VE K+A
Sbjct: 65 ARPHKVD--GSFVEPKRA 80
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 203 (76.5 bits), Expect = 6.5e-16, P = 6.5e-16
Identities = 57/195 (29%), Positives = 92/195 (47%)
Query: 17 TTTQKMTGLSLTPVTEPALAQ-FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSV 75
TT T L + + + + F FG GEI +++D+ TGQ G+GFV Y DP
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 76 VDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG 134
+K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G
Sbjct: 105 AEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 161
Query: 135 DVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PK 189
+ +I+ D T SRG GFI FD E+A+ L G K A + VK A P
Sbjct: 162 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPS 219
Query: 190 KPNLPQPSYRRYNNP 204
+ + + Y +P
Sbjct: 220 QKSSQALLSQLYQSP 234
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 43 GAT-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 101 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 134
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 202 (76.2 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 59 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 115
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 116 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 175
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 176 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 227
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 36 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 93
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 94 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 127
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 204 (76.9 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 103 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 159
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 160 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGF 219
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR-YNNP 204
I FD E+A+ L G K A + VK A Q + Y +P
Sbjct: 220 IRFDKRIEAEEAIKGL--NGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQSP 271
Score = 122 (48.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/100 (27%), Positives = 51/100 (51%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P GS D + V +P ++ ++EF+ F G+++ +++RD T +S G+GF+
Sbjct: 76 PMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 135
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 136 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 171
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 203 (76.5 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 57/195 (29%), Positives = 92/195 (47%)
Query: 17 TTTQKMTGLSLTPVTEPALAQ-FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSV 75
TT T L + + + + F FG GEI +++D+ TGQ G+GFV Y DP
Sbjct: 40 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 76 VDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG 134
+K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G
Sbjct: 100 AEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 156
Query: 135 DVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PK 189
+ +I+ D T SRG GFI FD E+A+ L G K A + VK A P
Sbjct: 157 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPS 214
Query: 190 KPNLPQPSYRRYNNP 204
+ + + Y +P
Sbjct: 215 QKSSQALLSQLYQSP 229
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 38 GAT-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 96 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 129
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 204 (76.9 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 100 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVK 159
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+G+V +
Sbjct: 160 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVD 218
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF +Q L G L + G V + AEPK
Sbjct: 219 VFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPK 262
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 202 (76.2 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 54/180 (30%), Positives = 88/180 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP+ DK I + +NG +++ K
Sbjct: 53 EFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTI 109
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR-SRGFG 154
+ S + ++V G+P ++++ + + F Q+G + +I+ D T+ SRG G
Sbjct: 110 KVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVG 169
Query: 155 FITFDTEQAVDDLLA--KGNKLELAGAQVEVKKAE-PKKPN-------LPQPSYRRYNNP 204
FI FD ++ + G K A + VK A P + L Q + RRY P
Sbjct: 170 FIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQTAARRYTGP 229
Score = 127 (49.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 82 DTHIINGKQVEIKRTIPKGAV----GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 137
+T + NG ++P G V G+ D + V +P ++ ++EFK F G+++
Sbjct: 9 ETQVSNGPS---GTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIE 65
Query: 138 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+++RD T +S G+GF+ + D + N L+L ++V A P ++
Sbjct: 66 SCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASI 121
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 202 (76.2 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 58/176 (32%), Positives = 86/176 (48%)
Query: 42 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKG 100
FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K +
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYA 115
Query: 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD- 159
S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 160 ---TEQAVDDLLAKGNKLELAGAQVEVKKAE-P-KKPN------LPQPSYRRYNNP 204
E+A+ L G K A + VK A P +K N L Q RRY P
Sbjct: 176 RIEAEEAIKGL--NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 202 (76.2 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 58/176 (32%), Positives = 86/176 (48%)
Query: 42 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKG 100
FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K +
Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYA 115
Query: 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD- 159
S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 160 ---TEQAVDDLLAKGNKLELAGAQVEVKKAE-P-KKPN------LPQPSYRRYNNP 204
E+A+ L G K A + VK A P +K N L Q RRY P
Sbjct: 176 RIEAEEAIKGL--NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 203 (76.5 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 57/195 (29%), Positives = 92/195 (47%)
Query: 17 TTTQKMTGLSLTPVTEPALAQ-FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSV 75
TT T L + + + + F FG GEI +++D+ TGQ G+GFV Y DP
Sbjct: 45 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 76 VDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG 134
+K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G
Sbjct: 105 AEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 161
Query: 135 DVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PK 189
+ +I+ D T SRG GFI FD E+A+ L G K A + VK A P
Sbjct: 162 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPS 219
Query: 190 KPNLPQPSYRRYNNP 204
+ + + Y +P
Sbjct: 220 QKSSQALLSQLYQSP 234
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 43 GAT-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 101 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 134
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 53/168 (31%), Positives = 83/168 (49%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 99
HF ++G + D V+M D T R FGFV YA VD + H +N I + PK
Sbjct: 33 HFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNVRPHKVN----RIGK--PK 86
Query: 100 GAVGSKDFKT-------KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRG 152
AV +D + KK FVGGI E + +F Q+G+++ +IM D + + RG
Sbjct: 87 MAVSREDSQRPGAHLTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRG 146
Query: 153 FGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR 200
F F+T D ++D ++ + + + G EV++A K+ + RR
Sbjct: 147 FAFVTCDDHDSIDKIVIQ-KQHTVNGHNYEVRRALSKQEMASASTSRR 193
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 202 (76.2 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 61 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 117
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 118 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 177
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 178 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 229
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 38 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 96 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 129
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 202 (76.2 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 61 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 117
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 118 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 177
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 178 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 229
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 38 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 96 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 129
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 202 (76.2 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 54 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 222
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 31 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 89 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 202 (76.2 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 54 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 110
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 111 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 170
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 171 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 222
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 31 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 89 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 202 (76.2 bits), Expect = 9.2e-16, P = 9.2e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 61 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 117
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 118 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 177
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 178 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 229
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 38 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 96 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 129
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 202 (76.2 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 77 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 133
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 134 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 193
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 194 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 245
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 37/137 (27%), Positives = 66/137 (48%)
Query: 65 FGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK----GAVGSKDFKTKKIFVGGIPSS 120
F ++ +P V + +T NG R P GA + D KT I V +P +
Sbjct: 18 FMIISTMEPQVSNGPTSNTS--NGPSSN-NRNCPSPMQTGAA-TDDSKTNLI-VNYLPQN 72
Query: 121 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF----DTEQAVDDLLAKGNKLEL 176
+ ++EF+ F G+++ +++RD T +S G+GF+ + D E+A++ L N L L
Sbjct: 73 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL----NGLRL 128
Query: 177 AGAQVEVKKAEPKKPNL 193
++V A P ++
Sbjct: 129 QTKTIKVSYARPSSASI 145
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 202 (76.2 bits), Expect = 9.6e-16, P = 9.6e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 65 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 121
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 122 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 181
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 182 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 233
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 42 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 99
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 100 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 133
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 202 (76.2 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 53/174 (30%), Positives = 85/174 (48%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 66 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 122
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 123 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 182
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAE-PKKPNLPQPSYRRYNNP 204
I FD E+A+ L G K A + VK A P + + + Y +P
Sbjct: 183 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 234
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 43 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 101 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 134
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 50/171 (29%), Positives = 84/171 (49%)
Query: 20 QKMTGLSLTPVTEPALAQFIK-HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78
QK + L + + Q +K +F +GE+ + KD KTG +GFGFV + + K
Sbjct: 101 QKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 160
Query: 79 VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE 138
V+ H+I+G+ + K K + + +++K+FVG + +E + FF Q+G+V +
Sbjct: 161 VMSQRHMIDGRWCDCKLPNSKQSP-DEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVD 219
Query: 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
I + R F F+TF ++ L G L + G V + AEPK
Sbjct: 220 VFIPKPF-----RAFAFVTFADDKVAQSLC--GEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 198 (74.8 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 46/146 (31%), Positives = 76/146 (52%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS +T+ +L HF ++G +TD V+M+D T RGFG + D ++ + +
Sbjct: 20 GLSFE-ITDESLRT---HFEQWGTLTDYVVMRDPNTKCSRGFGAMEEVDAAMNSRPCKVG 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142
++ K+ + P+ V KKIFVGGI E +D+F Q+G ++ + M
Sbjct: 76 RRVLEPKRAVSQEDSPRPGVL---LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESM 132
Query: 143 RDHSTSRSRGFGFITFDTEQAVDDLL 168
D + + RGF F+TFD +VD ++
Sbjct: 133 TDRGSGKKRGFAFVTFDDHDSVDKIV 158
Score = 112 (44.5 bits), Expect = 0.00041, P = 0.00041
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 99
+F +YG+I M DR +G+ RGF FVT+ D VDK VI+ H NG +++T+ K
Sbjct: 119 YFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHAANGHNRVVRKTLWK 178
Query: 100 GAVGS 104
+ S
Sbjct: 179 QEMAS 183
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 201 (75.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K
Sbjct: 66 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTI 122
Query: 97 -IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
+ S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GF
Sbjct: 123 KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGF 182
Query: 156 ITFD----TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRR-YNNP 204
I FD E+A+ L G K A + VK A Q + Y +P
Sbjct: 183 IRFDKRIEAEEAIKGL--NGQKPSGATEPITVKFANNPSQKTSQALLSQLYQSP 234
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF- 158
GA + D KT I V +P ++ ++EF+ F G+++ +++RD T +S G+GF+ +
Sbjct: 43 GAA-TDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 159 ---DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
D E+A++ L N L L ++V A P ++
Sbjct: 101 DPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 134
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 46/161 (28%), Positives = 80/161 (49%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALAQFIKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYA 71
++ T T L + + + + +K FG GEI +++D+ TGQ G+GFV Y
Sbjct: 29 VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 72 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130
DP +K I + +NG +++ K + S + ++V G+P ++ + E + F
Sbjct: 89 DPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Query: 131 MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171
Q+G + +I+ D T SRG GFI FD ++ + KG
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 185
Score = 116 (45.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 98 PKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
P + ++D KT I V +P ++ ++E K F G+++ +++RD T +S G+GF+
Sbjct: 28 PVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 86
Query: 158 F----DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193
+ D E+A++ L N L L ++V A P ++
Sbjct: 87 YIDPKDAEKAINTL----NGLRLQTKTIKVSYARPSSASI 122
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 196 (74.1 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 57/166 (34%), Positives = 82/166 (49%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS T+ +L HF ++G +TD V M+D RGFGFVTY +D +
Sbjct: 20 GLSFK-TTDESLRS---HFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAAMNAR 74
Query: 84 -HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H ++G VE KR + + KKIFVG V ED F Q+G ++ +
Sbjct: 75 PHKVDGGVVEPKRAVSREDSPRPGAHLTVKKIFVG-----VKEDTEGHHFEQYGKIEVIE 129
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 130 IMTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHT-VNGHNCEVRKA 174
Score = 133 (51.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 99
HF +YG+I IM DR +G+ RGF FVT+ DP VD VI+ H +NG E+++ +
Sbjct: 118 HFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKALSN 177
Query: 100 GAVGS 104
+ S
Sbjct: 178 QELAS 182
Score = 126 (49.4 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/87 (32%), Positives = 53/87 (60%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ ++ + F Q+G + + +MRD + SRGFGF+T+ T + +D + A
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDC-VMRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 170 KGNKLELAGAQVEVKKAEPKKPNLPQP 196
+ +K++ G VE K+A ++ + P+P
Sbjct: 74 RPHKVD--GGVVEPKRAVSREDS-PRP 97
WARNING: HSPs involving 859 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.137 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 367 236 0.00089 113 3 11 22 0.46 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1109
No. of states in DFA: 544 (58 KB)
Total size of DFA: 157 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.61u 0.09s 21.70t Elapsed: 00:00:01
Total cpu time: 21.65u 0.09s 21.74t Elapsed: 00:00:01
Start: Thu May 9 18:12:42 2013 End: Thu May 9 18:12:43 2013
WARNINGS ISSUED: 2