BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017735
(367 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 117/172 (68%), Gaps = 17/172 (9%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96
+ +HF YGE++ +++M+D+ TG+PRGFGFV ++DPSV+D+V+++ H I+ ++V++KR
Sbjct: 21 KLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRA 80
Query: 97 IPK------GAVGSKDF----------KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
+ + G G+ + KTKKIFVGG+P ++ ++EF+ +F +G V +
Sbjct: 81 MSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVA 140
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192
IM D +T+R RGFGF++FD+E AVD +L K +L+G QVEVK+A PK N
Sbjct: 141 IMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH-DLSGKQVEVKRALPKDAN 191
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGGI +ED+ ++ F +G+V + +MRD T R RGFGF+ F +D +L +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 171 GNKLELAGAQVEVKKA 186
+ ++ +V+VK+A
Sbjct: 67 KHSIDT--REVDVKRA 80
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPK 99
+FG+YG+I+++++MKD T + RGFGFVT++DP+ VDKV+ TH ++GK+V+ K P+
Sbjct: 48 YFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR 107
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ + ++ K +F QFG +++ +M D T+R RGFGF+TF
Sbjct: 108 RAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ 167
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
+E VD + + + E+ VE KKA+PK+ LP
Sbjct: 168 SEDVVDK-VCEIHFHEINNKMVECKKAQPKEVMLP 201
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + + +D+F ++GD+ E +M+D +T RSRGFGF+TF +VD +L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 171 GNKLELAGAQVEVKKAEPKK 190
G EL G +V+ K A P++
Sbjct: 90 GTH-ELDGKKVDPKVAFPRR 108
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 104/160 (65%), Gaps = 8/160 (5%)
Query: 30 VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGK 89
TE L ++ FGKYG +TD IMKD TG+ RGFGF+++ PS VD+V++ HI++GK
Sbjct: 170 TTEDNLREY---FGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGK 226
Query: 90 QVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR 149
++ KR IP+ KT KIFVGGI V EF++FF Q+G + + Q+M D T +
Sbjct: 227 VIDPKRAIPRDEQD----KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQ 282
Query: 150 SRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
SRGFGF+T+D+ AV D + + ++ ++E+K+AEP+
Sbjct: 283 SRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAEPR 321
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ED +++F ++G V + +IM+D +T RSRGFGF++F+ +VD+++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 171 GNKLELAGAQVEVKKAEPK 189
+ L+ G ++ K+A P+
Sbjct: 220 QHILD--GKVIDPKRAIPR 236
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 98/149 (65%), Gaps = 5/149 (3%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKG 100
+F ++GE+ D +M+D TG+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR- 240
Query: 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 160
+ KT K+FVGG+P E+EF++FF QFG V + +M D T R RGFGF+T++
Sbjct: 241 ---EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Query: 161 EQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
E AV+ +++ + + G VEVK+A PK
Sbjct: 298 ESAVEATMSQP-YITIHGKPVEVKRATPK 325
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ +D +D+F QFG+V + +MRD +T RSRGFGF+TF + V+++++K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ L+ G ++ K+A P++
Sbjct: 224 EHHLD--GKIIDPKRAIPRE 241
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKR 95
+F F ++G + D+ +M D+ TG+PRGFGFVTY + S V+ + +I I+GK VE+KR
Sbjct: 262 EFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKR 321
Query: 96 TIPKGAV 102
PK ++
Sbjct: 322 ATPKASL 328
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 102/159 (64%), Gaps = 2/159 (1%)
Query: 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQ 90
E ++F ++G+I D V+MK+ ++G+ RGFGFVT+ADP+ V+ V+++ H ++G+
Sbjct: 17 ETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRT 76
Query: 91 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 150
++ K P+ K K+F+GG+PS+V E + + FF ++G V E IM D +S
Sbjct: 77 IDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKS 136
Query: 151 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
RGFGF++F+ E +V+ + + + L G QVE+KKAEP+
Sbjct: 137 RGFGFLSFEEESSVEHVTNE-RYINLNGKQVEIKKAEPR 174
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ +F +FGD+ + +M+++ + RSRGFGF+TF V+ +L
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 171 GNKLELAGAQVEVKKAEPKKPNLPQ 195
G L G ++ K P+ P+
Sbjct: 68 GPHT-LDGRTIDPKPCNPRTLQKPK 91
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+
Sbjct: 40 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+
Sbjct: 100 RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
E V+ + + + E+ VE KKA+PK+ P
Sbjct: 160 NEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ EL ++ K A P++
Sbjct: 82 PHH-ELDSKTIDPKVAFPRR 100
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS V E ++F ++G++ D+++M D+ T + RGFGFVT+ +
Sbjct: 107 TRTKKIFVGGLSANTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPKGAV 102
VV+KV E H IN K VE K+ PK +
Sbjct: 163 VVEKVCEIHFHEINNKMVECKKAQPKEVM 191
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+
Sbjct: 40 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR 99
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A +TKKIFVGG+ ++ ++ K +F QFG V++ +M D +T+R RGFGF+TF+
Sbjct: 100 RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194
E V+ + + + E+ VE KKA+PK+ P
Sbjct: 160 NEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 171 GNKLELAGAQVEVKKAEPKK 190
+ EL ++ K A P++
Sbjct: 82 PHH-ELDSKTIDPKVAFPRR 100
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 17 TTTQKMT--GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPS 74
T T+K+ GLS V E ++F ++G++ D+++M D+ T + RGFGFVT+ +
Sbjct: 107 TRTKKIFVGGLSANTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 VVDKVIE-DTHIINGKQVEIKRTIPKGAV 102
VV+KV E H IN K VE K+ PK +
Sbjct: 163 VVEKVCEIHFHEINNKMVECKKAQPKEVM 191
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 97/164 (59%), Gaps = 16/164 (9%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAVG--------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G S + K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+
Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA- 69
Query: 171 GNKLELAGAQVEVKKAEPK 189
L G ++ K P+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 36 AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94
+ ++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 95 RTIPKGA 101
R P+ +
Sbjct: 187 RAEPRDS 193
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 96/164 (58%), Gaps = 16/164 (9%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAVG--------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH 145
G S K+ KIFVGGIP + E E +++F +FG V E ++ D
Sbjct: 89 GMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 148
Query: 146 STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+
Sbjct: 149 EKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA- 69
Query: 171 GNKLELAGAQVEVKKAEPK 189
L G ++ K P+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 36 AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94
+ ++F K+G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 95 RTIPKGA 101
R P+ +
Sbjct: 187 RAEPRDS 193
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 17/165 (10%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPK 99
+F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V V+ H ++G+ ++ K P+
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 100 GAVG---------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144
G +++ ++ KIFVGGIP + E E K++F +FG V E ++ D
Sbjct: 89 GMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYD 148
Query: 145 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189
R RGFGFITF+ EQ+VD + + ++ G +VEVK+AEP+
Sbjct: 149 AEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 192
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ S ++ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA- 69
Query: 171 GNKLELAGAQVEVKKAEPK 189
L G ++ K P+
Sbjct: 70 SRPHTLDGRNIDPKPCTPR 88
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 36 AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94
+ ++F ++G +T+ V++ D + +PRGFGF+T+ D VD+ + H I GK+VE+K
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187
Query: 95 RTIPKGA 101
R P+ +
Sbjct: 188 RAEPRDS 194
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 2/203 (0%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGG 218
++E V+ + + + E+ VE KKA+PK+ P S R + P F G
Sbjct: 158 ESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGM 216
Query: 219 YGGGGFAGGGFGGSGGGGGGGGY 241
G GF + G GY
Sbjct: 217 LGYPGFQATTYASRSYTGLAPGY 239
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 2/203 (0%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGG 218
++E V+ + + + E+ VE KKA+PK+ P S R + P F G
Sbjct: 158 ESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGM 216
Query: 219 YGGGGFAGGGFGGSGGGGGGGGY 241
G GF + G GY
Sbjct: 217 LGYPGFQATTYASRSYTGLAPGY 239
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 2/203 (0%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIP 98
++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P
Sbjct: 38 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 97
Query: 99 KGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
+ A +TKKIFVGG+ + ++ K +F QFG V + +M D +T+R RGFGF+TF
Sbjct: 98 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGG 218
++E V+ + + + E+ VE KKA+PK+ P S R + P F G
Sbjct: 158 ESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGM 216
Query: 219 YGGGGFAGGGFGGSGGGGGGGGY 241
G GF + G GY
Sbjct: 217 LGYPGFQATTYASRSYTGLAPGY 239
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ +++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 GNKLELAGAQVEVKKAEPKK 190
++ EL ++ K A P++
Sbjct: 81 -SRHELDSKTIDPKVAFPRR 99
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 11/162 (6%)
Query: 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQ 90
E + HFGKYGEI + D +TG+ RGF F+ + + +DKV D HIIN K+
Sbjct: 66 ETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKK 125
Query: 91 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS 150
V+ PK A + KIFVGG+ + ++++E K +F QFG++ E ++ D S+
Sbjct: 126 VD-----PKKAKA----RHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQR 176
Query: 151 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192
+GF FITFD+EQ V DLL K K ++AG +V+VK+A PK N
Sbjct: 177 KGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPEN 217
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A G +D +K+FVGG+ E E +D F ++G+++ + D T RSRGF FI F
Sbjct: 47 AASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFT 105
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
+A+D + A + + KK +PKK
Sbjct: 106 NTEAIDKVSAADEHI------INSKKVDPKK 130
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 30 VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIING 88
TE + + +FG++G I + + D++ Q +GF F+T+ VV +++ I G
Sbjct: 144 TTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAG 203
Query: 89 KQVEIKRTIPK 99
K+V++KR PK
Sbjct: 204 KEVDVKRATPK 214
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 100/164 (60%), Gaps = 8/164 (4%)
Query: 27 LTP-VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-TH 84
L P TE L F +G++G++ D V+M+D T + RGFGF+TY +VD+ E+ H
Sbjct: 39 LAPYTTEENLKLF---YGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPH 95
Query: 85 IINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142
II+GK VE KR +P+ S++ KK+FVGG+ + +E+ +++F+QFG+V +++
Sbjct: 96 IIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLL 155
Query: 143 RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
D +T + RGF F+ FD AVD + K + + V+VKK+
Sbjct: 156 TDKTTGKRRGFAFVEFDDYDAVDKAILK-KQHAIKYVHVDVKKS 198
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ K F+ Q+G V + +MRD +T RSRGFGFIT+ VD A
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDR--A 89
Query: 170 KGNKLELA-GAQVEVKKAEPK 189
+ N+ + G VE K+A P+
Sbjct: 90 QENRPHIIDGKTVEAKRALPR 110
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTI 97
++F ++G + ++ D+ TG+ RGF FV + D VDK +++ H I V++K++I
Sbjct: 141 EYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSI 199
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS E + HF ++G +TD V+M+D T + RGFGFVTYA VD + T
Sbjct: 20 GLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 84 -HIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI E +D+F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA PK+
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VKGHNCEVRKALPKQ 184
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
+ K A + + +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
T+ T + VD + ++ G VE K+A
Sbjct: 61 TYATVEEVDAAM-NTTPHKVDGRVVEPKRA 89
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF K+G I D V+MKD +T + RGFGF+TY+ S++D+ + H I+G+ VE KR +P+
Sbjct: 50 HFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPR 109
Query: 100 GAVGSKDF--KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
+ S + KK+FVG + +E +D+F FG++ + I+ D T + RGF F+
Sbjct: 110 QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVE 169
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
FD VD ++ + +L G V+VKKA PK+
Sbjct: 170 FDDYDPVDKVVLQKQH-QLNGKMVDVKKALPKQ 201
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ ++ K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDE-AQ 89
Query: 170 KGNKLELAGAQVEVKKAEPKK 190
K ++ G VE K+A P++
Sbjct: 90 KSRPHKIDGRVVEPKRAVPRQ 110
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS E + HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI E +D+F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA 71
Query: 168 L-AKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS E + HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI E +D+F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALCKQ 184
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 L-AKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS E + HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI E +D+F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 L-AKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS E + HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI E +D+F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 L-AKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS E + HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI E +D+F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 L-AKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 18/175 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS E + HF ++G +TD V+M+D T + RGFGFVTYA VD +
Sbjct: 20 GLSFETTDESLRS----HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI E +D+F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA K+
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKALSKQ 184
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ ++ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 L-AKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 72 MNARPHKVD--GRVVEPKRA 89
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 94/152 (61%), Gaps = 8/152 (5%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK
Sbjct: 88 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PK 142
Query: 100 GAVGSKDFKTKKIFVGGI-PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158
A+ K KKIFVGG+ P S E++ +++F +FG+++ ++ D ++ RGF FITF
Sbjct: 143 KAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E+ V +L K ++G++ E+K A+PK+
Sbjct: 203 KEEEPVKKVLEKKFHT-VSGSKCEIKVAQPKE 233
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 171 GNKLELAGAQVEVKKA 186
+ L G ++ KKA
Sbjct: 130 -KEHRLDGRVIDPKKA 144
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L P + P + ++FG++GEI + D K + RGF F+T+ + V KV+E H
Sbjct: 160 LNPES-PTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHT 218
Query: 86 INGKQVEIKRTIPK 99
++G + EIK PK
Sbjct: 219 VSGSKCEIKVAQPK 232
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 14/155 (9%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIP 98
+HF K+G +TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE P
Sbjct: 53 EHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE-----P 107
Query: 99 KGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSR 151
K AV +D KKIFVGGI E +D+F ++G ++ ++M D + + R
Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167
Query: 152 GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
GF F+TFD VD ++ + + G EVKKA
Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 166
+ +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 167 LLAKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 93 MCARPHKVD--GRVVEPKRA 110
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 14/155 (9%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIP 98
+HF K+G +TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE P
Sbjct: 53 EHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE-----P 107
Query: 99 KGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSR 151
K AV +D KKIFVGGI E +D+F ++G ++ ++M D + + R
Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167
Query: 152 GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
GF F+TFD VD ++ + + G EVKKA
Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 166
+ +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 167 LLAKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 93 MCARPHKVD--GRVVEPKRA 110
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 14/155 (9%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIP 98
+HF K+G +TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE P
Sbjct: 53 EHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE-----P 107
Query: 99 KGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSR 151
K AV +D KKIFVGGI E +D+F ++G ++ ++M D + + R
Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167
Query: 152 GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
GF F+TFD VD ++ + + G EVKKA
Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 166
+ +K+F+GG+ +D ++ F ++G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 167 LLAKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 93 MCARPHKVD--GRVVEPKRA 110
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 96/159 (60%), Gaps = 7/159 (4%)
Query: 30 VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIING 88
T+ + +F + ++GEITD ++M+D T + RGFGFVT++ + VD ++ HII+G
Sbjct: 34 TTDDLMREF---YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDG 90
Query: 89 KQVEIKRTIPKGAVG--SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS 146
K V+ KR +P+ + TK+++V G+ ED ++F ++G V + +I+ D +
Sbjct: 91 KTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKA 150
Query: 147 TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185
T + RGFGF+TFD +VD + + + + + G + +V+K
Sbjct: 151 TQKPRGFGFVTFDDHDSVDQCVLQKSHM-VNGHRCDVRK 188
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+KIFVGG+ S+ +D ++F+ QFG++ + +MRD +T RSRGFGF+TF + VD +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 170 KGNKLELAGAQVEVKKAEPK 189
+ + + G V+ K+A P+
Sbjct: 83 QRPHI-IDGKTVDPKRAVPR 101
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 31 TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGK 89
TE L ++ F KYG +T S I+ D+ T +PRGFGFVT+ D VD+ V++ +H++NG
Sbjct: 126 TEDMLTEY---FTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGH 182
Query: 90 QVEIKRTIPKGAVG 103
+ ++++ + K +
Sbjct: 183 RCDVRKGLSKDEMS 196
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 99
HF K+G I D V+MKD KT + RGFGF+TY+ ++D H I+G+ VE KR +P+
Sbjct: 43 HFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPR 102
Query: 100 GAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
+ S + KK+FVGG+ +E+ +++F FG + I+ D T + RGF FI
Sbjct: 103 QEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIE 162
Query: 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
FD VD ++ + + ++VKKA K+
Sbjct: 163 FDDYDPVDKIILQKTH-SIKNKTLDVKKAIAKQ 194
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167
+ +K+F+GG+ +D K F ++G++ + +M+D T RSRGFGFIT+ +D+
Sbjct: 22 QLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81
Query: 168 L-AKGNKLELAGAQVEVKKAEPKK 190
A+ +K++ G VE K+A P++
Sbjct: 82 QNARPHKID--GRTVEPKRAVPRQ 103
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQ 90
E L ++ K FG +I I+ D+ TG+ RGF F+ + D VDK+I + TH I K
Sbjct: 128 EECLREYFKDFG---QIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKT 184
Query: 91 VEIKRTIPK 99
+++K+ I K
Sbjct: 185 LDVKKAIAK 193
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 67 LTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 126
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
A+ K+ KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FI
Sbjct: 127 ---KALKGKE-PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 182
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
T+ E+ V LL + ++ + E+K A+PK+
Sbjct: 183 TYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 215
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 170 KGNKLELAGAQVEVKKAE 187
K +KL+ G ++ K+A+
Sbjct: 112 KEHKLD--GKLIDPKRAK 127
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T + Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 143 LSPDT--SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 200
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 201 IGSGKCEIKVAQPK 214
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 40 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIP 98
+HF ++G++TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE KR +
Sbjct: 45 EHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVS 104
Query: 99 K--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
+ A KKIFVGGI E +D+F +G ++ ++M D + + RGF F+
Sbjct: 105 REDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFV 164
Query: 157 TFDTEQAVDDLLA-KGNKLELAGAQVEVKKAEPKK 190
TFD VD ++ K + + L EVKKA K+
Sbjct: 165 TFDDHDTVDKIVVQKYHTINLHNC--EVKKALSKQ 197
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 166
+ +K+F+GG+ +D ++ F Q+G + + +MRD T RSRGFGF+T+ + VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 167 LLAKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 85 MSARPHKVD--GRVVEPKRA 102
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 7/151 (4%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPK 99
+F K+GE+ D I D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK
Sbjct: 94 YFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PK 148
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ K KKIFVGG+ E++ +++F QFG+++ ++ D ++ RGF FITF
Sbjct: 149 KAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK 208
Query: 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
E V +L K ++G++ E+K A+PK+
Sbjct: 209 EEDPVKKVLEKKFHT-VSGSKCEIKVAQPKE 238
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+FVGG+ ++ + KD+F +FG+V + I D +T RSRGFGFI F +V+ +L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 171 GNKLELAGAQVEVKKA 186
+ L G ++ KKA
Sbjct: 136 -KEHRLDGRVIDPKKA 150
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 27 LTP-VTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-H 84
L P TE + ++ FG++GEI + D K + RGF F+T+ + V KV+E H
Sbjct: 166 LNPEATEEKIREY---FGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFH 222
Query: 85 IINGKQVEIKRTIPK 99
++G + EIK PK
Sbjct: 223 TVSGSKCEIKVAQPK 237
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 17/155 (10%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82
GLS T+ +L + HF ++G +TD V+M+D + + RGFGFVTY VD +
Sbjct: 20 GLSF-ETTDESLRE---HFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTAR 75
Query: 83 THIINGKQVEIKRTIPKGAVGSKD-------FKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135
H ++G+ VE PK AV +D KKIFVGGI ED +++F Q+G
Sbjct: 76 PHKVDGRVVE-----PKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGK 130
Query: 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
++ +IM D + + RGF F+TF+ +VD ++ +
Sbjct: 131 IEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-D 166
+ +K+F+GG+ ++ ++ F Q+G + + +MRD ++ RSRGFGF+T+ + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAA 71
Query: 167 LLAKGNKLELAGAQVEVKKA 186
+ A+ +K++ G VE K+A
Sbjct: 72 MTARPHKVD--GRVVEPKRA 89
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 164 LTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 223
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
A+ K+ KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FI
Sbjct: 224 ---KALKGKE-PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 279
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
T+ E+ V LL + ++ + E+K A+PK+
Sbjct: 280 TYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 312
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 170 KGNKLELAGAQVEVKKAE 187
K +KL+ G ++ K+A+
Sbjct: 209 KEHKLD--GKLIDPKRAK 224
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T + Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 240 LSPDT--SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 297
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 298 IGSGKCEIKVAQPK 311
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS TE +L + + ++G++TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFET-TEESLRNY---YEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 83 THIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD ++ + + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHT-INGHNAEVRKA 187
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + ++G++TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 15 GLSFQT-TEESLRNY---YEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 84 -HIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIE 130
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD ++ + + G EV+KA
Sbjct: 131 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRKA 175
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 KGNKLELAGAQVEVKKA 186
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83
GLS TE +L + + ++G++TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 15 GLSFET-TEESLRNY---YEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 84 -HIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD ++ + + G EV+KA
Sbjct: 131 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRKA 175
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169
+K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 KGNKLELAGAQVEVKKA 186
+ G VE K+A
Sbjct: 69 -ARPHSIDGRVVEPKRA 84
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96
++ ++GE+ D I D TG+ RGFGFV + D + V+KV+E H ++GK ++ KR
Sbjct: 46 LTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA 105
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
A+ K+ KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FI
Sbjct: 106 ---KALKGKE-PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 161
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
T+ E+ V LL + ++ + E+K A+PK+
Sbjct: 162 TYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 194
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T + Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 122 LSPDT--SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 179
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 180 IGSGKCEIKVAQPK 193
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +V+ +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV--- 87
Query: 171 GNKLELAGAQVEVKKAEPKK 190
LEL +++ K +PK+
Sbjct: 88 ---LELKEHKLDGKLIDPKR 104
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS TE +L + + ++G++TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFET-TEESLRNY---YEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 83 THIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD ++ + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRKA 187
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS TE +L + + ++G++TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFET-TEESLRNY---YEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 83 THIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD ++ + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRKA 187
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96
++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR
Sbjct: 45 LTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA 104
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
A+ K+ KK+FVGG+ +E++ K++F FG+++ ++ D T+ RGF FI
Sbjct: 105 ---KALKGKE-PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 160
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
T+ E+ V LL + ++ + E+K A+PK+
Sbjct: 161 TYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 193
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T + Q ++FG +GEI + + D KT + RGF F+TY D V K++E H
Sbjct: 121 LSPDT--SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQ 178
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 179 IGSGKCEIKVAQPK 192
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV--- 86
Query: 171 GNKLELAGAQVEVKKAEPKK 190
LEL +++ K +PK+
Sbjct: 87 ---LELKEHKLDGKLIDPKR 103
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 24 GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-ED 82
GLS TE +L + + ++G++TD V+M+D + + RGFGFVT++ + VD +
Sbjct: 27 GLSFET-TEESLRNY---YEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 83 THIINGKQVEIKRTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140
H I+G+ VE KR + + G KK+FVGGI E +D+F ++G + +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
I+ D + + RGFGF+TFD VD + + + G EV+KA
Sbjct: 143 IITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHT-INGHNAEVRKA 187
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155
T+P + + +K+F+GG+ E+ ++++ Q+G + + +MRD ++ RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186
+TF + VD +A + G VE K+A
Sbjct: 67 VTFSSMAEVDAAMA-ARPHSIDGRVVEPKRA 96
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96
++ ++GE+ D I D TG+ RGFGFV + D VDKV+E H ++GK ++ KR
Sbjct: 42 LTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA 101
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
A+ K+ KK+FVGG+ E++ K +F FG+++ ++ D T+ RGF F+
Sbjct: 102 ---KALKGKE-PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFV 157
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
T+ E+ V LL + ++ + E+K A+PK+
Sbjct: 158 TYTGEEPVKKLL-ESRFHQIGTGKCEIKVAQPKE 190
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVL-E 85
Query: 171 GNKLELAGAQVEVKKAEPKKPNLP 194
+ +L G ++ K+A+ K P
Sbjct: 86 TKEHKLDGKLIDPKRAKALKGKEP 109
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P E Q ++FG +GEI + + D KT + RGF FVTY V K++E H
Sbjct: 118 LSP--ETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQ 175
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 176 IGTGKCEIKVAQPK 189
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 26 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVY 145
Query: 158 FDTEQAVDD-LLAKGNKLELAGAQVEVKKAEPKK 190
F + A D + K + ++ G +VEVKKA PK+
Sbjct: 146 FQSHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRT 96
I+HF ++G + + I+ D+++G+ RGFGFV + DK + H I G +VE+K+
Sbjct: 114 LIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 97 IPK 99
+PK
Sbjct: 174 VPK 176
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ +E + F FG + + ++ + T RSR FGF+T+ + D +A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 170 -----KGNKLELAGAQVEVKKAEP 188
GN +EL A A P
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARP 91
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 99
HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + +
Sbjct: 26 HFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSR 85
Query: 100 --GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157
A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+
Sbjct: 86 EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVY 145
Query: 158 FDTEQAVDD-LLAKGNKLELAGAQVEVKKAEPKK 190
F A D + K + ++ G +VEVKKA PK+
Sbjct: 146 FQNHDAADKAAVVKFHPIQ--GHRVEVKKAVPKE 177
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRT 96
I+HF ++G + + I+ D+++G+ RGFGFV + + DK + H I G +VE+K+
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 97 IPK 99
+PK
Sbjct: 174 VPK 176
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA- 169
K+F+GG+ +E + F FG + + ++ + T RSR FGF+T+ + D +A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 170 -----KGNKLELAGAQVEVKKAEP 188
GN +EL A A P
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARP 91
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 6/145 (4%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV+ + H +NGK ++ KR
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 173 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 160 TEQAVDDLLAKG-NKLELAGAQVEV 183
E+ V ++ K + + L+ +++V
Sbjct: 232 EEEPVKKIMEKKYHNVGLSKCEIKV 256
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 GNKLELAGAQVEVKKA------EPKK--------PNLPQPSYRRY 201
+ +L G ++ K+A EP K P+ P+ R Y
Sbjct: 158 -KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T + ++FG +GE+ + D KT + RGF F+T+ + V K++E H
Sbjct: 189 LSPDT--PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 246
Query: 86 INGKQVEIKRTIPK 99
+ + EIK + K
Sbjct: 247 VGLSKCEIKVAMSK 260
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 6/145 (4%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 99
+F K+GE+ D + D TG+ RGFGFV + + VDKV+ + H +NGK ++ KR
Sbjct: 116 YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 172
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 173 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
Query: 160 TEQAVDDLLAKG-NKLELAGAQVEV 183
E+ V ++ K + + L+ +++V
Sbjct: 232 EEEPVKKIMEKKYHNVGLSKCEIKV 256
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + + KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 GNKLELAGAQVEVKKA------EPKK--------PNLPQPSYRRY 201
+ +L G ++ K+A EP K P+ P+ R Y
Sbjct: 158 -KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T + ++FG +GE+ + D KT + RGF F+T+ + V K++E H
Sbjct: 189 LSPDT--PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 246
Query: 86 INGKQVEIKRTIPK 99
+ + EIK + K
Sbjct: 247 VGLSKCEIKVAMSK 260
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 6/154 (3%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96
++ ++GE+ D I D TG+ RGFGFV + D VDKV+E + H ++GK ++ KR
Sbjct: 42 LTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA 101
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
A+ K+ KK+FVGG+ E++ K +F FG+++ ++ D T+ RGF F+
Sbjct: 102 ---KALKGKE-PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFV 157
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
T+ E+ V LL + ++ + E+K A+PK+
Sbjct: 158 TYTGEEPVKKLL-ESRFHQIGTGKCEIKAAQPKE 190
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVL-E 85
Query: 171 GNKLELAGAQVEVKKAEPKK 190
N+ +L G ++ K+A+ K
Sbjct: 86 TNEHKLDGKLIDPKRAKALK 105
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P E Q ++FG +GEI + + D KT + RGF FVTY V K++E H
Sbjct: 118 LSP--ETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQ 175
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 176 IGTGKCEIKAAQPK 189
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Query: 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96
++ ++GE+ D I D TG+ RGFGFV + D VDKV+E H ++GK ++ KR
Sbjct: 50 LTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA 109
Query: 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156
A+ K+ KK+FVGG+ E++ K +F FG+++ ++ D T+ RGF F+
Sbjct: 110 ---KALQGKE-PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFV 165
Query: 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190
T+ E+ V LL + ++ + E+K A+PK+
Sbjct: 166 TYTDEEPVQKLL-ESRFHQIGTGKCEIKAAQPKE 198
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-A 169
K+F+GG+ ++ + ++ +FG+V + I D T RSRGFGF+ F +VD +L
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 170 KGNKLELAGAQVEVKKAE 187
K +KL+ G ++ K+A+
Sbjct: 95 KEHKLD--GKLIDPKRAK 110
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P E Q ++FG +GEI + + D KT + RGF FVTY D V K++E H
Sbjct: 126 LSP--ETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQ 183
Query: 86 INGKQVEIKRTIPK 99
I + EIK PK
Sbjct: 184 IGTGKCEIKAAQPK 197
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 89/145 (61%), Gaps = 6/145 (4%)
Query: 41 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPK 99
+F K+G++ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR
Sbjct: 114 YFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--- 170
Query: 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159
A+ +K+ KKIFVGG+ E++ +++F FG+V+ ++ D+ T++ RGF FITF
Sbjct: 171 KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 229
Query: 160 TEQAVDDLLAKG-NKLELAGAQVEV 183
E+ V ++ K + + L+ +++V
Sbjct: 230 EEEPVKKIMEKKYHNVGLSKCEIKV 254
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170
K+F+GG+ + + KD+F +FGDV + + D T RSRGFGF+ F ++VD ++ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 171 GNKLELAGAQVEVKKA------EPKK--------PNLPQPSYRRY 201
+ +L G ++ K+A EP K P+ P+ R Y
Sbjct: 156 -KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 199
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 27 LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HI 85
L+P T + ++FG +GE+ + D KT + RGF F+T+ + V K++E H
Sbjct: 187 LSPDT--PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 244
Query: 86 INGKQVEIKRTIPK 99
+ + EIK + K
Sbjct: 245 VGLSKCEIKVAMSK 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.143 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,589,419
Number of Sequences: 539616
Number of extensions: 11616372
Number of successful extensions: 224352
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2318
Number of HSP's successfully gapped in prelim test: 1296
Number of HSP's that attempted gapping in prelim test: 51139
Number of HSP's gapped (non-prelim): 48863
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)