Query 017735
Match_columns 367
No_of_seqs 396 out of 2623
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.2E-34 6.9E-39 271.2 25.5 170 15-192 105-278 (346)
2 TIGR01645 half-pint poly-U bin 100.0 7E-30 1.5E-34 253.8 21.3 174 16-193 106-288 (612)
3 KOG0148 Apoptosis-promoting RN 100.0 3.6E-29 7.7E-34 218.1 16.0 163 19-191 64-240 (321)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-28 4.4E-33 235.1 20.8 167 16-190 2-172 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 2.6E-28 5.7E-33 242.3 21.3 173 14-190 86-267 (457)
6 KOG0117 Heterogeneous nuclear 100.0 7.2E-27 1.6E-31 216.3 25.7 167 18-196 84-338 (506)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-27 2.9E-32 229.4 21.8 172 16-191 88-351 (352)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.9E-26 4.1E-31 229.1 24.2 166 15-192 136-310 (578)
9 KOG0144 RNA-binding protein CU 99.9 4.9E-28 1.1E-32 223.0 10.1 170 17-194 34-211 (510)
10 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-26 2.4E-31 236.2 18.8 166 18-190 1-168 (562)
11 TIGR01628 PABP-1234 polyadenyl 99.9 6.2E-26 1.4E-30 230.7 19.0 169 17-191 178-366 (562)
12 KOG4205 RNA-binding protein mu 99.9 2.6E-26 5.5E-31 211.3 12.7 176 16-196 5-183 (311)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 1.7E-25 3.8E-30 222.2 17.2 160 17-191 58-224 (578)
14 KOG0145 RNA-binding protein EL 99.9 1.2E-25 2.6E-30 194.9 13.2 166 19-192 43-212 (360)
15 KOG0127 Nucleolar protein fibr 99.9 6E-25 1.3E-29 207.9 15.5 172 16-192 4-199 (678)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-24 3.1E-29 218.4 19.4 174 13-190 171-376 (509)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.7E-24 5.9E-29 214.1 19.6 161 16-190 1-175 (481)
18 KOG0131 Splicing factor 3b, su 99.9 7.6E-25 1.6E-29 180.9 12.7 171 14-191 6-179 (203)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.2E-24 9E-29 212.8 19.4 164 16-189 274-480 (481)
20 KOG0109 RNA-binding protein LA 99.9 1.8E-24 3.9E-29 190.6 11.0 152 17-194 2-155 (346)
21 KOG0127 Nucleolar protein fibr 99.9 1.2E-23 2.6E-28 199.1 16.0 170 17-191 117-380 (678)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4E-23 8.7E-28 207.9 19.4 169 16-188 294-501 (509)
23 KOG0124 Polypyrimidine tract-b 99.9 4.8E-23 1E-27 186.4 11.6 172 17-192 113-293 (544)
24 KOG0145 RNA-binding protein EL 99.9 1.5E-21 3.2E-26 169.6 15.7 170 17-190 127-359 (360)
25 KOG0123 Polyadenylate-binding 99.9 1.2E-21 2.7E-26 186.5 16.0 153 19-193 3-157 (369)
26 TIGR01622 SF-CC1 splicing fact 99.9 6.4E-21 1.4E-25 189.4 19.7 166 17-190 186-449 (457)
27 KOG0147 Transcriptional coacti 99.9 2E-22 4.4E-27 191.7 6.9 176 13-192 175-361 (549)
28 KOG0146 RNA-binding protein ET 99.9 2.1E-21 4.5E-26 169.3 10.6 174 15-193 17-369 (371)
29 KOG0148 Apoptosis-promoting RN 99.8 4.9E-21 1.1E-25 167.4 11.1 140 14-190 3-143 (321)
30 PLN03134 glycine-rich RNA-bind 99.8 9.2E-20 2E-24 151.9 15.7 86 106-191 31-116 (144)
31 KOG0110 RNA-binding protein (R 99.8 2.2E-20 4.8E-25 182.4 12.2 169 19-191 517-695 (725)
32 KOG0123 Polyadenylate-binding 99.8 3.1E-20 6.7E-25 177.0 12.9 176 7-190 66-247 (369)
33 KOG0144 RNA-binding protein CU 99.8 1.7E-19 3.7E-24 166.9 12.2 82 111-192 426-507 (510)
34 KOG4211 Splicing factor hnRNP- 99.8 1.4E-17 3.1E-22 156.9 15.3 164 16-188 9-181 (510)
35 KOG0105 Alternative splicing f 99.8 1.4E-17 3.1E-22 138.1 13.3 151 14-178 3-177 (241)
36 KOG0113 U1 small nuclear ribon 99.7 1.3E-17 2.9E-22 147.9 10.2 104 93-196 85-188 (335)
37 KOG4206 Spliceosomal protein s 99.7 2.5E-16 5.4E-21 135.6 14.4 165 15-187 7-220 (221)
38 TIGR01645 half-pint poly-U bin 99.7 7.3E-16 1.6E-20 154.0 19.7 77 17-97 204-282 (612)
39 TIGR01659 sex-lethal sex-letha 99.7 1.9E-16 4.2E-21 150.2 11.4 86 105-190 103-188 (346)
40 KOG4212 RNA-binding protein hn 99.7 3.6E-15 7.8E-20 138.5 16.5 166 16-187 43-292 (608)
41 KOG0122 Translation initiation 99.6 9.4E-16 2E-20 132.8 10.2 83 107-189 187-269 (270)
42 KOG0117 Heterogeneous nuclear 99.6 3.2E-15 7E-20 139.4 12.7 115 71-188 42-163 (506)
43 PF00076 RRM_1: RNA recognitio 99.6 1.6E-15 3.5E-20 110.2 8.5 70 112-182 1-70 (70)
44 KOG0147 Transcriptional coacti 99.6 1.8E-15 3.9E-20 144.6 10.8 163 17-188 278-527 (549)
45 KOG0106 Alternative splicing f 99.6 7.8E-16 1.7E-20 133.8 7.3 147 18-184 2-166 (216)
46 KOG0121 Nuclear cap-binding pr 99.6 1.2E-15 2.5E-20 119.5 6.9 82 108-189 35-116 (153)
47 PLN03134 glycine-rich RNA-bind 99.6 5.7E-15 1.2E-19 123.1 10.4 81 16-100 33-115 (144)
48 KOG0149 Predicted RNA-binding 99.6 2.7E-15 5.9E-20 129.5 8.1 83 105-188 8-90 (247)
49 KOG0107 Alternative splicing f 99.6 3.1E-15 6.8E-20 123.4 8.1 78 108-190 9-86 (195)
50 KOG0110 RNA-binding protein (R 99.6 1.3E-14 2.9E-19 142.3 12.6 164 14-187 382-596 (725)
51 KOG1548 Transcription elongati 99.6 1E-13 2.2E-18 125.7 15.5 168 15-191 132-354 (382)
52 KOG0125 Ataxin 2-binding prote 99.6 1.3E-14 2.7E-19 130.7 8.9 83 105-189 92-174 (376)
53 PLN03120 nucleic acid binding 99.6 2.9E-14 6.4E-19 127.2 11.2 79 108-190 3-81 (260)
54 KOG4207 Predicted splicing fac 99.6 1.4E-14 3.1E-19 122.4 8.5 85 107-191 11-95 (256)
55 PF14259 RRM_6: RNA recognitio 99.5 3.2E-14 7E-19 103.7 9.1 70 112-182 1-70 (70)
56 KOG0105 Alternative splicing f 99.5 3E-14 6.6E-19 118.4 9.5 78 108-188 5-82 (241)
57 KOG0130 RNA-binding protein RB 99.5 2.4E-14 5.3E-19 113.0 7.8 91 103-193 66-156 (170)
58 KOG0149 Predicted RNA-binding 99.5 4E-14 8.7E-19 122.3 6.2 79 16-98 11-90 (247)
59 KOG0111 Cyclophilin-type pepti 99.5 3.4E-14 7.5E-19 121.1 4.8 85 107-191 8-92 (298)
60 KOG0126 Predicted RNA-binding 99.5 7.6E-15 1.6E-19 121.7 0.7 103 85-188 12-114 (219)
61 smart00362 RRM_2 RNA recogniti 99.5 4.7E-13 1E-17 96.8 9.3 72 111-184 1-72 (72)
62 KOG1457 RNA binding protein (c 99.5 1.3E-12 2.8E-17 111.9 12.9 153 16-176 33-273 (284)
63 PLN03213 repressor of silencin 99.4 3.3E-13 7.2E-18 127.3 9.6 80 106-189 7-88 (759)
64 KOG4212 RNA-binding protein hn 99.4 5.3E-13 1.2E-17 124.2 10.8 82 108-190 43-125 (608)
65 PLN03121 nucleic acid binding 99.4 6.7E-13 1.4E-17 116.7 10.7 78 108-189 4-81 (243)
66 COG0724 RNA-binding proteins ( 99.4 1.3E-12 2.8E-17 119.8 12.8 147 17-167 115-283 (306)
67 KOG0124 Polypyrimidine tract-b 99.4 3E-12 6.6E-17 116.8 14.4 167 15-185 208-531 (544)
68 smart00360 RRM RNA recognition 99.4 7.6E-13 1.6E-17 95.3 8.5 71 114-184 1-71 (71)
69 KOG1190 Polypyrimidine tract-b 99.4 4.3E-12 9.4E-17 117.4 14.9 160 17-188 297-490 (492)
70 KOG0120 Splicing factor U2AF, 99.4 1.9E-12 4.1E-17 125.5 12.0 167 17-187 289-490 (500)
71 KOG0131 Splicing factor 3b, su 99.4 5.5E-13 1.2E-17 110.9 6.3 83 107-189 7-89 (203)
72 COG0724 RNA-binding proteins ( 99.4 3.3E-12 7.2E-17 117.0 11.7 80 109-188 115-194 (306)
73 KOG0114 Predicted RNA-binding 99.4 3.6E-12 7.8E-17 96.3 9.3 81 106-189 15-95 (124)
74 cd00590 RRM RRM (RNA recogniti 99.4 4.8E-12 1E-16 91.9 9.7 74 111-185 1-74 (74)
75 KOG0122 Translation initiation 99.4 2E-12 4.3E-17 112.3 8.7 81 15-99 187-269 (270)
76 KOG0129 Predicted RNA-binding 99.4 1.3E-11 2.7E-16 117.9 14.4 164 17-185 259-450 (520)
77 KOG0108 mRNA cleavage and poly 99.3 2.2E-12 4.7E-17 124.4 8.5 82 110-191 19-100 (435)
78 KOG0120 Splicing factor U2AF, 99.3 2.6E-12 5.6E-17 124.6 6.9 171 10-190 168-370 (500)
79 KOG0415 Predicted peptidyl pro 99.3 3.2E-12 6.8E-17 116.2 6.8 87 105-191 235-321 (479)
80 KOG1456 Heterogeneous nuclear 99.3 2.7E-11 5.9E-16 111.0 12.7 161 16-191 30-201 (494)
81 KOG4211 Splicing factor hnRNP- 99.3 2E-10 4.3E-15 109.1 18.6 162 17-186 103-355 (510)
82 PF00076 RRM_1: RNA recognitio 99.3 1E-11 2.2E-16 90.0 7.9 68 20-92 1-70 (70)
83 KOG0113 U1 small nuclear ribon 99.3 3.9E-12 8.4E-17 113.4 6.8 77 17-97 101-179 (335)
84 KOG0121 Nuclear cap-binding pr 99.3 5.1E-12 1.1E-16 99.2 6.5 82 11-96 30-113 (153)
85 smart00361 RRM_1 RNA recogniti 99.3 1.2E-11 2.7E-16 90.1 7.8 62 123-184 2-70 (70)
86 KOG4207 Predicted splicing fac 99.3 3E-12 6.4E-17 108.5 5.0 79 15-97 11-91 (256)
87 KOG0109 RNA-binding protein LA 99.3 4.8E-12 1E-16 112.4 6.2 74 110-191 3-76 (346)
88 KOG0125 Ataxin 2-binding prote 99.3 7.8E-12 1.7E-16 112.8 7.3 83 15-103 94-178 (376)
89 KOG1365 RNA-binding protein Fu 99.3 5.5E-12 1.2E-16 115.8 5.8 166 16-187 160-360 (508)
90 PF13893 RRM_5: RNA recognitio 99.3 2.6E-11 5.7E-16 84.2 7.8 56 126-186 1-56 (56)
91 PF14259 RRM_6: RNA recognitio 99.3 3.5E-11 7.5E-16 87.5 8.7 68 20-92 1-70 (70)
92 PLN03120 nucleic acid binding 99.2 4.2E-11 9E-16 107.2 9.3 78 17-101 4-82 (260)
93 KOG0111 Cyclophilin-type pepti 99.2 3.8E-11 8.3E-16 102.7 7.1 106 11-130 4-111 (298)
94 KOG0126 Predicted RNA-binding 99.2 4.8E-12 1E-16 105.2 0.7 81 15-99 33-115 (219)
95 KOG0108 mRNA cleavage and poly 99.2 1.9E-11 4E-16 118.0 4.8 78 18-99 19-98 (435)
96 KOG4205 RNA-binding protein mu 99.2 4.3E-11 9.2E-16 110.8 5.9 86 108-194 5-90 (311)
97 KOG0107 Alternative splicing f 99.2 7.6E-11 1.7E-15 97.6 6.7 75 16-99 9-85 (195)
98 KOG1456 Heterogeneous nuclear 99.1 1.8E-09 3.8E-14 99.2 15.9 152 17-178 287-474 (494)
99 KOG0116 RasGAP SH3 binding pro 99.1 5.1E-10 1.1E-14 107.5 12.8 79 110-189 289-367 (419)
100 PLN03121 nucleic acid binding 99.1 2.4E-10 5.1E-15 100.8 9.3 76 16-98 4-80 (243)
101 KOG1190 Polypyrimidine tract-b 99.1 1.5E-09 3.2E-14 100.9 14.8 163 19-195 152-379 (492)
102 KOG0153 Predicted RNA-binding 99.1 2.6E-10 5.7E-15 103.9 8.9 80 103-188 222-302 (377)
103 KOG4210 Nuclear localization s 99.1 1.5E-10 3.3E-15 106.8 6.4 170 17-191 88-266 (285)
104 KOG0132 RNA polymerase II C-te 99.1 2.4E-10 5.3E-15 113.5 8.1 81 107-193 419-499 (894)
105 PLN03213 repressor of silencin 99.1 1.6E-10 3.5E-15 109.4 6.3 77 15-99 8-88 (759)
106 KOG0130 RNA-binding protein RB 99.1 2.8E-10 6.1E-15 90.2 6.5 79 19-101 74-154 (170)
107 KOG0226 RNA-binding proteins [ 99.1 1.4E-10 2.9E-15 101.5 5.1 151 39-190 117-271 (290)
108 smart00360 RRM RNA recognition 99.1 6.9E-10 1.5E-14 79.5 7.6 68 22-93 1-70 (71)
109 smart00362 RRM_2 RNA recogniti 99.0 9.1E-10 2E-14 79.2 8.0 69 19-93 1-71 (72)
110 KOG0128 RNA-binding protein SA 99.0 2.2E-11 4.8E-16 122.1 -1.2 149 15-188 665-814 (881)
111 KOG4208 Nucleolar RNA-binding 99.0 9.1E-10 2E-14 93.8 8.5 85 105-189 45-130 (214)
112 KOG4454 RNA binding protein (R 99.0 9.7E-11 2.1E-15 100.2 1.8 145 15-183 7-157 (267)
113 KOG4206 Spliceosomal protein s 99.0 1.4E-09 3.1E-14 94.0 8.4 83 108-193 8-94 (221)
114 KOG0146 RNA-binding protein ET 99.0 7.2E-10 1.6E-14 97.6 6.0 99 89-192 3-104 (371)
115 KOG1365 RNA-binding protein Fu 99.0 2.4E-09 5.1E-14 98.7 8.5 167 15-187 58-241 (508)
116 cd00590 RRM RRM (RNA recogniti 98.9 6.7E-09 1.5E-13 75.0 8.6 71 19-94 1-73 (74)
117 smart00361 RRM_1 RNA recogniti 98.9 3.9E-09 8.5E-14 76.8 7.0 59 35-93 2-69 (70)
118 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.7E-09 7.9E-14 101.8 8.1 81 109-189 405-485 (940)
119 KOG0112 Large RNA-binding prot 98.9 1.3E-09 2.7E-14 110.2 5.0 165 11-192 366-534 (975)
120 KOG0533 RRM motif-containing p 98.9 6.4E-09 1.4E-13 92.8 8.9 86 106-192 80-165 (243)
121 KOG0114 Predicted RNA-binding 98.8 1.2E-08 2.6E-13 77.4 7.3 77 16-99 17-95 (124)
122 PF13893 RRM_5: RNA recognitio 98.8 2.3E-08 5E-13 69.3 7.0 54 38-96 1-56 (56)
123 KOG1995 Conserved Zn-finger pr 98.8 3.8E-08 8.2E-13 90.7 9.9 86 106-191 63-156 (351)
124 KOG1855 Predicted RNA-binding 98.8 5.5E-09 1.2E-13 97.7 4.4 94 92-185 214-320 (484)
125 KOG4209 Splicing factor RNPS1, 98.8 1.7E-08 3.7E-13 90.3 7.3 85 104-189 96-180 (231)
126 KOG1548 Transcription elongati 98.8 3.7E-08 8.1E-13 90.0 9.1 82 106-188 131-220 (382)
127 KOG0415 Predicted peptidyl pro 98.8 7.2E-09 1.6E-13 94.7 4.5 81 15-99 237-319 (479)
128 KOG1457 RNA binding protein (c 98.7 9.4E-08 2E-12 82.4 10.0 86 107-192 32-121 (284)
129 KOG4307 RNA binding protein RB 98.7 2.4E-08 5.2E-13 98.4 6.8 165 16-186 310-511 (944)
130 KOG4454 RNA binding protein (R 98.7 7.1E-09 1.5E-13 88.9 2.2 79 107-187 7-85 (267)
131 PF04059 RRM_2: RNA recognitio 98.7 1.4E-07 3E-12 72.4 8.5 80 110-189 2-87 (97)
132 KOG0132 RNA polymerase II C-te 98.6 2.9E-08 6.4E-13 99.0 5.5 111 11-131 415-528 (894)
133 KOG0153 Predicted RNA-binding 98.6 8E-08 1.7E-12 87.9 7.5 75 14-98 225-302 (377)
134 KOG0106 Alternative splicing f 98.5 7.2E-08 1.6E-12 84.3 4.1 72 110-189 2-73 (216)
135 KOG4660 Protein Mei2, essentia 98.5 7.8E-08 1.7E-12 93.1 4.4 78 100-182 66-143 (549)
136 KOG4208 Nucleolar RNA-binding 98.5 3.1E-07 6.6E-12 78.5 7.1 77 19-99 51-130 (214)
137 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.5E-07 5.5E-12 89.4 7.2 77 17-97 405-483 (940)
138 KOG2193 IGF-II mRNA-binding pr 98.3 9.2E-08 2E-12 89.4 -0.2 156 18-194 2-162 (584)
139 KOG4849 mRNA cleavage factor I 98.3 5.7E-07 1.2E-11 82.3 4.7 80 106-185 77-158 (498)
140 KOG0116 RasGAP SH3 binding pro 98.3 1.7E-06 3.6E-11 83.6 6.9 79 17-99 288-367 (419)
141 KOG4676 Splicing factor, argin 98.2 5.5E-07 1.2E-11 83.6 2.6 151 18-177 8-214 (479)
142 KOG0128 RNA-binding protein SA 98.2 1.2E-07 2.5E-12 95.9 -2.3 145 37-181 588-739 (881)
143 KOG0151 Predicted splicing reg 98.2 3.7E-06 8E-11 83.6 7.6 84 106-189 171-257 (877)
144 KOG0533 RRM motif-containing p 98.2 6.1E-06 1.3E-10 73.9 7.9 82 14-100 80-163 (243)
145 PF08777 RRM_3: RNA binding mo 98.2 3.8E-06 8.3E-11 65.9 5.5 71 110-186 2-77 (105)
146 KOG4660 Protein Mei2, essentia 98.1 4.5E-06 9.7E-11 81.1 6.2 157 15-188 73-249 (549)
147 KOG4209 Splicing factor RNPS1, 98.1 6E-06 1.3E-10 74.0 6.0 82 12-97 96-178 (231)
148 PF11608 Limkain-b1: Limkain b 98.1 1.4E-05 3.1E-10 58.7 6.4 71 110-190 3-78 (90)
149 KOG1995 Conserved Zn-finger pr 97.9 1.2E-05 2.5E-10 74.5 3.9 83 14-100 63-155 (351)
150 PF04059 RRM_2: RNA recognitio 97.8 0.00012 2.7E-09 56.2 7.6 61 18-82 2-64 (97)
151 KOG0226 RNA-binding proteins [ 97.7 3.3E-05 7.2E-10 68.2 3.8 74 19-96 192-267 (290)
152 KOG3973 Uncharacterized conser 97.7 5.3E-05 1.2E-09 69.6 4.6 20 168-187 291-310 (465)
153 COG5175 MOT2 Transcriptional r 97.6 0.00017 3.6E-09 66.2 7.5 84 105-188 110-202 (480)
154 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00013 2.8E-09 49.7 4.9 52 110-168 2-53 (53)
155 KOG4307 RNA binding protein RB 97.6 0.0002 4.4E-09 71.4 7.7 75 110-185 868-943 (944)
156 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00032 6.9E-09 47.8 5.1 52 18-80 2-53 (53)
157 KOG2591 c-Mpl binding protein, 97.4 0.00025 5.5E-09 69.0 6.1 71 106-183 172-246 (684)
158 KOG2314 Translation initiation 97.4 0.00051 1.1E-08 67.1 8.1 78 107-185 56-140 (698)
159 KOG0151 Predicted splicing reg 97.4 0.00038 8.1E-09 69.7 7.0 76 17-96 174-254 (877)
160 KOG2202 U2 snRNP splicing fact 97.3 9.1E-05 2E-09 65.7 1.4 64 124-188 83-147 (260)
161 PF08777 RRM_3: RNA binding mo 97.3 0.00034 7.4E-09 54.9 4.5 58 19-86 3-60 (105)
162 PF11608 Limkain-b1: Limkain b 97.2 0.0013 2.8E-08 48.5 6.4 70 18-97 3-75 (90)
163 KOG4210 Nuclear localization s 97.2 0.00028 6.2E-09 65.4 3.3 80 17-100 184-265 (285)
164 KOG0115 RNA-binding protein p5 97.2 0.001 2.2E-08 59.1 6.4 101 73-186 7-111 (275)
165 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.3E-08 60.0 6.5 65 123-187 300-365 (378)
166 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0017 3.6E-08 50.3 6.8 77 109-187 6-90 (100)
167 PF10309 DUF2414: Protein of u 97.1 0.0027 5.8E-08 44.4 6.9 56 108-171 4-62 (62)
168 KOG3152 TBP-binding protein, a 97.1 0.00033 7.1E-09 62.1 2.4 73 108-180 73-157 (278)
169 KOG0129 Predicted RNA-binding 97.0 0.0018 4E-08 62.8 7.1 64 108-171 258-326 (520)
170 KOG1855 Predicted RNA-binding 97.0 0.00056 1.2E-08 64.8 3.3 64 16-83 230-306 (484)
171 KOG4849 mRNA cleavage factor I 96.9 0.00066 1.4E-08 62.6 2.9 71 19-93 82-156 (498)
172 PF08952 DUF1866: Domain of un 96.9 0.0053 1.1E-07 50.5 7.8 76 106-190 24-108 (146)
173 PF15023 DUF4523: Protein of u 96.8 0.0068 1.5E-07 49.2 7.8 75 105-187 82-160 (166)
174 PF07292 NID: Nmi/IFP 35 domai 96.7 0.0037 8E-08 47.0 5.3 66 66-131 1-74 (88)
175 PF08952 DUF1866: Domain of un 96.7 0.0059 1.3E-07 50.2 6.7 78 15-100 25-108 (146)
176 KOG2314 Translation initiation 96.6 0.0043 9.4E-08 60.8 6.5 66 17-83 58-125 (698)
177 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0098 2.1E-07 46.0 7.2 76 16-96 5-89 (100)
178 KOG2416 Acinus (induces apopto 96.6 0.002 4.4E-08 63.4 4.0 78 104-187 439-520 (718)
179 KOG4676 Splicing factor, argin 96.5 0.0034 7.4E-08 58.9 4.6 76 110-186 8-86 (479)
180 KOG2068 MOT2 transcription fac 96.2 0.0016 3.4E-08 60.3 0.5 84 106-189 74-163 (327)
181 PF08675 RNA_bind: RNA binding 95.9 0.035 7.6E-07 41.0 6.3 55 110-173 10-64 (87)
182 PF07576 BRAP2: BRCA1-associat 95.7 0.12 2.5E-06 40.8 9.3 68 109-178 13-81 (110)
183 COG5175 MOT2 Transcriptional r 95.3 0.044 9.6E-07 50.7 6.2 79 19-97 116-201 (480)
184 KOG2202 U2 snRNP splicing fact 95.3 0.01 2.2E-07 52.9 2.0 60 36-96 83-145 (260)
185 KOG2135 Proteins containing th 95.2 0.014 3.1E-07 56.2 3.0 76 15-99 370-446 (526)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.029 6.3E-07 48.3 4.6 82 108-189 6-98 (176)
187 PF10309 DUF2414: Protein of u 95.1 0.089 1.9E-06 36.8 5.8 54 17-82 5-61 (62)
188 PF08675 RNA_bind: RNA binding 95.0 0.15 3.2E-06 37.8 7.1 54 19-84 10-63 (87)
189 KOG1996 mRNA splicing factor [ 95.0 0.063 1.4E-06 48.8 6.1 66 29-94 294-362 (378)
190 PF03880 DbpA: DbpA RNA bindin 94.8 0.091 2E-06 38.3 5.6 58 120-186 12-74 (74)
191 KOG0112 Large RNA-binding prot 94.7 0.0086 1.9E-07 61.9 -0.0 79 107-186 370-448 (975)
192 PF15023 DUF4523: Protein of u 94.6 0.18 3.8E-06 41.2 7.3 74 15-95 84-158 (166)
193 KOG4483 Uncharacterized conser 94.6 0.2 4.3E-06 47.5 8.5 59 105-170 387-446 (528)
194 PF14111 DUF4283: Domain of un 94.5 0.059 1.3E-06 45.0 4.6 81 64-144 56-140 (153)
195 KOG2193 IGF-II mRNA-binding pr 94.5 0.041 8.9E-07 52.4 3.8 76 110-191 2-78 (584)
196 KOG0115 RNA-binding protein p5 94.4 0.099 2.1E-06 46.8 5.9 61 18-83 32-92 (275)
197 PF10567 Nab6_mRNP_bdg: RNA-re 94.1 1.6 3.6E-05 40.0 13.0 152 17-172 15-212 (309)
198 KOG4285 Mitotic phosphoprotein 93.9 0.26 5.7E-06 45.1 7.7 73 109-189 197-270 (350)
199 KOG4574 RNA-binding protein (c 93.8 0.04 8.7E-07 56.8 2.6 78 111-194 300-379 (1007)
200 KOG2591 c-Mpl binding protein, 93.8 0.07 1.5E-06 52.6 4.0 65 20-95 178-248 (684)
201 PF04847 Calcipressin: Calcipr 93.8 0.21 4.5E-06 43.3 6.6 62 122-189 8-71 (184)
202 PF11767 SET_assoc: Histone ly 93.5 0.37 8.1E-06 34.2 6.4 55 120-183 11-65 (66)
203 KOG2416 Acinus (induces apopto 93.5 0.058 1.2E-06 53.6 3.0 62 13-84 440-502 (718)
204 KOG2253 U1 snRNP complex, subu 93.3 0.058 1.3E-06 54.3 2.7 77 101-186 32-108 (668)
205 KOG2135 Proteins containing th 93.1 0.047 1E-06 52.8 1.6 73 109-188 372-445 (526)
206 PRK11634 ATP-dependent RNA hel 92.7 1.4 2.9E-05 45.9 11.8 60 119-187 497-561 (629)
207 KOG0804 Cytoplasmic Zn-finger 92.4 0.56 1.2E-05 45.4 7.8 68 109-178 74-142 (493)
208 KOG2891 Surface glycoprotein [ 92.0 0.5 1.1E-05 42.8 6.5 103 48-157 67-214 (445)
209 KOG4285 Mitotic phosphoprotein 91.7 0.33 7.1E-06 44.5 5.1 59 33-97 208-268 (350)
210 KOG2318 Uncharacterized conser 91.7 0.41 8.9E-06 47.6 6.2 32 153-184 270-301 (650)
211 KOG2068 MOT2 transcription fac 91.2 0.22 4.7E-06 46.4 3.6 79 19-98 79-162 (327)
212 KOG2253 U1 snRNP complex, subu 89.1 0.027 5.9E-07 56.5 -4.4 67 16-95 39-107 (668)
213 PF04847 Calcipressin: Calcipr 88.6 1.5 3.3E-05 37.9 6.5 62 32-99 6-71 (184)
214 KOG3262 H/ACA small nucleolar 88.2 13 0.00028 31.9 11.4 19 124-142 89-107 (215)
215 KOG3152 TBP-binding protein, a 88.0 0.37 8E-06 43.2 2.4 62 17-82 74-147 (278)
216 KOG0804 Cytoplasmic Zn-finger 87.6 2.2 4.8E-05 41.4 7.4 61 17-83 74-135 (493)
217 PF07576 BRAP2: BRCA1-associat 86.5 3.8 8.2E-05 32.3 7.1 54 32-90 24-78 (110)
218 PF03467 Smg4_UPF3: Smg-4/UPF3 85.1 0.85 1.8E-05 39.3 3.1 65 14-82 4-74 (176)
219 KOG4574 RNA-binding protein (c 84.3 0.79 1.7E-05 47.7 2.9 62 32-99 309-374 (1007)
220 PF07530 PRE_C2HC: Associated 84.2 1.7 3.8E-05 31.0 3.9 63 36-99 2-65 (68)
221 smart00596 PRE_C2HC PRE_C2HC d 84.2 1.5 3.2E-05 31.3 3.4 63 36-99 2-65 (69)
222 PF11767 SET_assoc: Histone ly 83.3 5.7 0.00012 28.2 6.1 43 31-82 10-52 (66)
223 KOG4213 RNA-binding protein La 82.7 2.2 4.8E-05 36.3 4.4 60 107-170 109-169 (205)
224 PF02714 DUF221: Domain of unk 81.5 2.2 4.9E-05 40.3 4.7 56 66-131 1-56 (325)
225 PF07530 PRE_C2HC: Associated 79.0 4.5 9.8E-05 28.9 4.4 64 124-190 2-66 (68)
226 KOG4410 5-formyltetrahydrofola 76.8 15 0.00032 33.7 8.0 57 110-172 331-395 (396)
227 smart00596 PRE_C2HC PRE_C2HC d 76.1 5 0.00011 28.6 3.9 64 124-190 2-66 (69)
228 KOG3262 H/ACA small nucleolar 74.4 56 0.0012 28.1 10.5 31 65-95 80-110 (215)
229 KOG4019 Calcineurin-mediated s 73.9 2.6 5.6E-05 36.0 2.3 75 109-189 10-90 (193)
230 PF08002 DUF1697: Protein of u 73.7 17 0.00037 29.8 7.1 117 20-142 6-132 (137)
231 PF03468 XS: XS domain; Inter 71.7 3.4 7.4E-05 32.9 2.5 38 121-161 29-66 (116)
232 KOG4213 RNA-binding protein La 69.6 6.1 0.00013 33.7 3.6 47 32-81 120-168 (205)
233 COG5638 Uncharacterized conser 68.8 29 0.00062 33.6 8.2 26 153-178 260-285 (622)
234 PF07292 NID: Nmi/IFP 35 domai 67.4 6.7 0.00014 29.6 3.1 32 154-185 1-33 (88)
235 TIGR02542 B_forsyth_147 Bacter 66.0 10 0.00022 29.9 3.9 108 36-161 16-129 (145)
236 KOG2295 C2H2 Zn-finger protein 65.0 0.89 1.9E-05 45.1 -2.5 70 108-177 230-299 (648)
237 PF00403 HMA: Heavy-metal-asso 62.3 33 0.00073 23.2 5.8 54 111-170 1-58 (62)
238 PF10567 Nab6_mRNP_bdg: RNA-re 60.5 16 0.00034 33.8 4.7 83 105-187 11-106 (309)
239 PF02714 DUF221: Domain of unk 60.3 9.2 0.0002 36.1 3.5 38 154-193 1-38 (325)
240 PF03880 DbpA: DbpA RNA bindin 59.6 35 0.00075 24.5 5.7 56 32-96 12-74 (74)
241 KOG4483 Uncharacterized conser 58.8 20 0.00044 34.4 5.3 55 19-84 393-448 (528)
242 PF03468 XS: XS domain; Inter 57.2 10 0.00022 30.2 2.6 54 19-75 10-68 (116)
243 TIGR03636 L23_arch archaeal ri 55.8 29 0.00062 25.4 4.6 57 112-171 16-74 (77)
244 COG5193 LHP1 La protein, small 54.7 13 0.00028 35.8 3.2 49 34-82 195-245 (438)
245 COG2061 ACT-domain-containing 53.3 1.3E+02 0.0029 25.1 11.1 127 40-176 24-156 (170)
246 cd00874 RNA_Cyclase_Class_II R 52.7 1.4E+02 0.003 28.4 10.0 125 14-158 106-237 (326)
247 PRK14548 50S ribosomal protein 51.3 34 0.00074 25.5 4.4 56 113-171 24-81 (84)
248 PF15513 DUF4651: Domain of un 51.3 28 0.00061 24.3 3.7 21 124-144 9-29 (62)
249 KOG4365 Uncharacterized conser 49.8 3 6.6E-05 40.3 -1.6 78 110-188 4-81 (572)
250 KOG4357 Uncharacterized conser 49.4 23 0.00049 28.3 3.4 23 153-175 115-137 (164)
251 PRK06728 aspartate-semialdehyd 48.7 1.5E+02 0.0032 28.5 9.5 18 65-82 255-272 (347)
252 PRK10629 EnvZ/OmpR regulon mod 48.4 1.1E+02 0.0025 24.7 7.4 59 121-187 50-109 (127)
253 TIGR02517 type_II_gspD general 48.1 2.3E+02 0.005 29.2 11.7 30 139-173 295-324 (594)
254 PRK08279 long-chain-acyl-CoA s 47.0 2.5E+02 0.0054 28.7 11.7 114 32-168 471-595 (600)
255 PF01037 AsnC_trans_reg: AsnC 46.5 91 0.002 21.6 6.2 45 34-82 11-55 (74)
256 PRK11901 hypothetical protein; 46.1 37 0.0008 32.0 4.8 53 119-173 252-306 (327)
257 PF14026 DUF4242: Protein of u 45.9 1.2E+02 0.0025 22.1 7.8 57 112-170 3-66 (77)
258 KOG1295 Nonsense-mediated deca 44.6 28 0.0006 33.4 3.8 70 108-177 6-78 (376)
259 PF00403 HMA: Heavy-metal-asso 44.5 96 0.0021 20.9 6.9 54 19-82 1-58 (62)
260 COG2242 CobL Precorrin-6B meth 44.0 2.2E+02 0.0047 24.8 10.1 99 71-189 66-165 (187)
261 COG3797 Uncharacterized protei 43.5 2.1E+02 0.0046 24.5 8.6 44 109-160 99-142 (178)
262 KOG4008 rRNA processing protei 42.6 19 0.00042 32.1 2.3 37 104-140 35-71 (261)
263 KOG0023 Alcohol dehydrogenase, 42.2 2.6E+02 0.0055 26.7 9.6 31 156-187 326-356 (360)
264 CHL00073 chlN photochlorophyll 41.2 86 0.0019 31.3 6.9 33 109-142 194-226 (457)
265 COG5193 LHP1 La protein, small 40.4 14 0.00031 35.5 1.2 62 108-169 173-244 (438)
266 COG1801 Uncharacterized conser 38.6 1.8E+02 0.0039 26.7 8.1 17 117-133 197-213 (263)
267 KOG3938 RGS-GAIP interacting p 37.8 29 0.00063 31.7 2.7 36 46-81 125-166 (334)
268 TIGR02515 IV_pilus_PilQ type I 37.8 76 0.0016 31.2 6.0 47 121-172 107-162 (418)
269 PF04278 Tic22: Tic22-like fam 37.1 2.2E+02 0.0047 26.4 8.5 137 32-173 62-223 (274)
270 PF13291 ACT_4: ACT domain; PD 36.6 1.3E+02 0.0029 21.4 5.8 57 32-88 17-74 (80)
271 PF09869 DUF2096: Uncharacteri 36.5 1.4E+02 0.0031 25.2 6.4 47 116-172 118-164 (169)
272 COG0445 GidA Flavin-dependent 35.3 76 0.0017 32.4 5.4 40 105-144 297-336 (621)
273 PF10915 DUF2709: Protein of u 34.5 2.6E+02 0.0056 24.3 7.7 73 47-134 36-117 (238)
274 KOG4000 Uncharacterized conser 34.4 1.5E+02 0.0032 26.7 6.4 36 45-81 14-49 (291)
275 PRK10905 cell division protein 33.6 71 0.0015 30.1 4.6 58 113-172 248-307 (328)
276 PF14893 PNMA: PNMA 33.3 39 0.00084 32.2 2.9 25 108-132 17-41 (331)
277 PF14111 DUF4283: Domain of un 33.1 14 0.00031 30.3 0.0 37 152-189 56-92 (153)
278 PTZ00237 acetyl-CoA synthetase 33.0 3.8E+02 0.0083 27.8 10.6 40 32-71 524-564 (647)
279 COG0030 KsgA Dimethyladenosine 32.0 1.9E+02 0.0042 26.5 7.1 35 109-143 95-129 (259)
280 cd06405 PB1_Mekk2_3 The PB1 do 32.0 2E+02 0.0044 20.9 7.2 60 115-183 14-74 (79)
281 KOG0739 AAA+-type ATPase [Post 31.8 1.1E+02 0.0024 28.8 5.5 25 108-132 306-330 (439)
282 COG2608 CopZ Copper chaperone 31.6 1.2E+02 0.0026 21.5 4.7 55 110-170 4-62 (71)
283 PRK11895 ilvH acetolactate syn 31.5 3.2E+02 0.0069 23.1 13.4 125 34-175 15-142 (161)
284 COG1207 GlmU N-acetylglucosami 31.3 93 0.002 30.6 5.1 64 110-173 98-173 (460)
285 COG4869 PduL Propanediol utili 31.0 92 0.002 26.5 4.4 35 110-144 132-166 (210)
286 PF08734 GYD: GYD domain; Int 30.9 1.6E+02 0.0034 22.1 5.4 44 124-171 23-67 (91)
287 KOG2854 Possible pfkB family c 30.7 1.5E+02 0.0032 28.2 6.1 29 14-46 78-106 (343)
288 TIGR00119 acolac_sm acetolacta 30.5 3.3E+02 0.0071 22.9 13.4 124 34-174 14-140 (157)
289 KOG4019 Calcineurin-mediated s 30.4 45 0.00097 28.7 2.5 60 34-99 28-90 (193)
290 PF11627 HnRNPA1: Nuclear fact 30.4 73 0.0016 19.6 2.7 20 322-341 9-28 (37)
291 TIGR00110 ilvD dihydroxy-acid 30.4 2.4E+02 0.0052 28.8 8.0 106 62-185 382-494 (535)
292 COG3560 FMR2 Predicted oxidore 30.1 37 0.0008 29.1 1.9 68 11-82 44-111 (200)
293 COG0225 MsrA Peptide methionin 29.5 86 0.0019 26.8 4.1 75 110-188 58-137 (174)
294 PF11411 DNA_ligase_IV: DNA li 29.4 35 0.00077 21.0 1.3 16 119-134 19-34 (36)
295 cd00875 RNA_Cyclase_Class_I RN 29.2 4.5E+02 0.0096 25.2 9.4 125 14-157 106-242 (341)
296 cd00187 TOP4c DNA Topoisomeras 28.8 3.1E+02 0.0067 27.4 8.5 59 109-169 225-287 (445)
297 KOG0156 Cytochrome P450 CYP2 s 28.8 83 0.0018 31.8 4.6 60 112-181 35-97 (489)
298 KOG0256 1-aminocyclopropane-1- 28.7 1.6E+02 0.0036 28.8 6.2 69 117-193 239-307 (471)
299 PRK06901 aspartate-semialdehyd 28.3 4.1E+02 0.0088 25.3 8.7 54 34-89 202-256 (322)
300 PHA00019 IV phage assembly pro 28.0 2.4E+02 0.0052 27.9 7.6 30 154-183 172-201 (428)
301 KOG1134 Uncharacterized conser 28.0 36 0.00078 36.1 1.9 168 5-189 175-343 (728)
302 COG1393 ArsC Arsenate reductas 27.6 43 0.00093 26.7 1.9 81 8-93 17-97 (117)
303 PRK14548 50S ribosomal protein 27.6 1.8E+02 0.004 21.6 5.1 47 32-81 31-79 (84)
304 cd04908 ACT_Bt0572_1 N-termina 27.1 2.1E+02 0.0045 19.5 8.0 45 122-170 14-59 (66)
305 COG0837 Glk Glucokinase [Carbo 27.1 1.1E+02 0.0024 28.7 4.6 69 64-144 35-104 (320)
306 PF03108 DBD_Tnp_Mut: MuDR fam 26.9 72 0.0016 22.2 2.8 31 68-98 8-38 (67)
307 PTZ00191 60S ribosomal protein 26.9 1.3E+02 0.0029 24.9 4.6 55 112-169 84-140 (145)
308 cd00295 RNA_Cyclase RNA 3' pho 26.9 4E+02 0.0088 25.4 8.7 48 111-158 192-244 (338)
309 COG0430 RCL1 RNA 3'-terminal p 26.9 3.7E+02 0.008 25.7 8.1 128 12-159 108-242 (341)
310 KOG2891 Surface glycoprotein [ 26.8 56 0.0012 29.9 2.6 40 15-54 147-194 (445)
311 COG5594 Uncharacterized integr 26.7 50 0.0011 35.0 2.6 20 151-170 357-376 (827)
312 KOG1175 Acyl-CoA synthetase [L 26.7 63 0.0014 33.6 3.3 89 33-132 508-598 (626)
313 PRK00766 hypothetical protein; 26.6 1.5E+02 0.0032 26.0 5.1 12 70-81 108-119 (194)
314 KOG0071 GTP-binding ADP-ribosy 26.4 2.1E+02 0.0045 23.9 5.5 16 116-131 129-144 (180)
315 PF11230 DUF3029: Protein of u 26.0 7.9 0.00017 37.9 -3.0 82 38-133 37-125 (487)
316 COG4009 Uncharacterized protei 25.9 1.1E+02 0.0023 22.5 3.4 25 110-134 49-73 (88)
317 KOG4410 5-formyltetrahydrofola 25.4 81 0.0018 29.1 3.4 47 18-73 331-377 (396)
318 PF11823 DUF3343: Protein of u 25.3 72 0.0016 22.7 2.6 26 153-178 3-28 (73)
319 COG3102 Uncharacterized protei 25.0 4.4E+02 0.0095 22.5 8.3 32 160-191 122-153 (185)
320 COG4010 Uncharacterized protei 25.0 1.6E+02 0.0035 24.3 4.7 46 116-171 118-163 (170)
321 PRK06598 aspartate-semialdehyd 24.9 2.3E+02 0.005 27.5 6.6 17 65-81 278-294 (369)
322 PF03439 Spt5-NGN: Early trans 24.7 76 0.0016 23.5 2.7 23 62-84 43-65 (84)
323 PF13037 DUF3898: Domain of un 24.4 1.1E+02 0.0023 23.0 3.2 48 35-82 33-88 (91)
324 PF04026 SpoVG: SpoVG; InterP 24.3 1.2E+02 0.0026 22.6 3.6 26 135-160 2-27 (84)
325 TIGR03399 RNA_3prim_cycl RNA 3 24.3 6.2E+02 0.013 24.0 11.7 125 14-158 108-239 (326)
326 COG2177 FtsX Cell division pro 24.3 5.9E+02 0.013 23.8 9.1 45 6-54 49-93 (297)
327 COG5507 Uncharacterized conser 24.2 66 0.0014 24.6 2.2 21 151-171 66-86 (117)
328 PRK13259 regulatory protein Sp 23.8 1.2E+02 0.0025 23.2 3.5 26 135-160 2-27 (94)
329 PF07876 Dabb: Stress responsi 23.8 3E+02 0.0065 20.2 6.4 55 114-168 6-71 (97)
330 COG0345 ProC Pyrroline-5-carbo 23.6 2E+02 0.0043 26.5 5.7 17 124-140 142-158 (266)
331 PRK11901 hypothetical protein; 23.5 1.3E+02 0.0029 28.4 4.5 51 32-83 253-304 (327)
332 PF13046 DUF3906: Protein of u 23.5 91 0.002 21.9 2.6 34 33-68 30-63 (64)
333 KOG4066 Cell growth regulatory 23.4 1.3E+02 0.0029 25.2 4.0 16 116-131 137-152 (177)
334 KOG3671 Actin regulatory prote 23.3 93 0.002 31.1 3.6 47 121-172 90-136 (569)
335 PF03439 Spt5-NGN: Early trans 23.1 1.4E+02 0.0031 21.9 3.9 26 150-175 43-68 (84)
336 PRK12338 hypothetical protein; 22.7 4.1E+02 0.0089 25.2 7.7 122 18-173 182-308 (319)
337 KOG2187 tRNA uracil-5-methyltr 22.4 80 0.0017 31.8 3.0 39 151-189 63-101 (534)
338 COG0079 HisC Histidinol-phosph 22.4 1.4E+02 0.0031 28.7 4.7 52 16-78 145-196 (356)
339 cd04880 ACT_AAAH-PDT-like ACT 22.2 2.6E+02 0.0057 19.5 5.1 50 33-83 11-64 (75)
340 KOG1975 mRNA cap methyltransfe 22.1 4.4E+02 0.0096 25.2 7.5 27 15-46 92-118 (389)
341 PF00398 RrnaAD: Ribosomal RNA 21.8 2E+02 0.0042 26.2 5.4 57 74-131 62-119 (262)
342 PRK14177 bifunctional 5,10-met 21.8 6.6E+02 0.014 23.4 9.4 39 32-83 48-86 (284)
343 TIGR03047 PS_II_psb28 photosys 21.7 4E+02 0.0087 20.9 7.6 31 48-80 12-42 (109)
344 cd04889 ACT_PDH-BS-like C-term 21.6 2.4E+02 0.0052 18.3 5.5 45 34-81 11-56 (56)
345 KOG2318 Uncharacterized conser 21.6 1.2E+02 0.0026 31.0 3.9 39 106-144 171-214 (650)
346 PRK10905 cell division protein 21.5 1.6E+02 0.0035 27.7 4.6 63 16-83 243-306 (328)
347 PF08156 NOP5NT: NOP5NT (NUC12 21.4 32 0.00069 24.4 0.0 38 124-171 27-64 (67)
348 TIGR03636 L23_arch archaeal ri 21.3 3E+02 0.0066 20.1 5.2 47 32-81 24-72 (77)
349 PHA01632 hypothetical protein 21.3 74 0.0016 21.6 1.7 21 112-132 19-39 (64)
350 smart00666 PB1 PB1 domain. Pho 21.2 3.1E+02 0.0068 19.5 6.0 54 113-172 13-69 (81)
351 COG3254 Uncharacterized conser 20.9 2.7E+02 0.006 21.6 5.0 44 123-169 26-69 (105)
352 KOG2311 NAD/FAD-utilizing prot 20.9 1.5E+02 0.0032 29.9 4.4 79 65-143 270-364 (679)
353 PRK04204 RNA 3'-terminal-phosp 20.8 7.5E+02 0.016 23.7 9.5 123 15-158 111-242 (343)
354 TIGR03279 cyano_FeS_chp putati 20.7 86 0.0019 31.0 2.8 61 111-171 184-249 (433)
355 PF09902 DUF2129: Uncharacteri 20.7 1.7E+02 0.0037 21.0 3.7 39 129-176 16-54 (71)
356 COG5584 Predicted small secret 20.5 1.4E+02 0.0031 22.8 3.3 26 32-57 33-58 (103)
357 CHL00128 psbW photosystem II p 20.5 4.4E+02 0.0095 20.8 7.6 31 48-80 15-45 (113)
358 PRK06737 acetolactate synthase 20.4 3.5E+02 0.0075 19.7 6.7 59 19-84 6-65 (76)
359 KOG3702 Nuclear polyadenylated 20.1 54 0.0012 33.8 1.3 59 110-168 512-570 (681)
360 PRK01178 rps24e 30S ribosomal 20.0 3.1E+02 0.0068 21.1 5.2 45 33-78 31-80 (99)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.2e-34 Score=271.21 Aligned_cols=170 Identities=22% Similarity=0.445 Sum_probs=154.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
...++|||.+|++ ++++++|+++|++|++|++|+|++|+.|+++++||||+|.++++|++||+++ .+|.+++|+
T Consensus 105 ~~~~~LfVgnLp~----~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 105 NSGTNLIVNYLPQ----DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 3567999999999 9999999999999999999999999999999999999999999999999854 488899999
Q ss_pred EeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 93 IKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 93 v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
|.++.+.. ...+.++|||.|||++++|++|+++|++|++|+.|+|++|+.++++++||||+|++.++|++||++||
T Consensus 181 V~~a~p~~----~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 181 VSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred eecccccc----cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 98876543 23356789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCC--eeeEeeecCCCCCC
Q 017735 173 KLELAG--AQVEVKKAEPKKPN 192 (367)
Q Consensus 173 g~~~~g--~~l~v~~a~~~~~~ 192 (367)
++.|.+ ++|+|++++.+...
T Consensus 257 g~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 257 NVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCccCCCceeEEEEECCccccc
Confidence 998876 78999998876543
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=7e-30 Score=253.80 Aligned_cols=174 Identities=22% Similarity=0.429 Sum_probs=154.7
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v 93 (367)
...+|||.||++ ++++++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++|++. ...|.++.|+|
T Consensus 106 ~~~rLfVGnLp~----~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 106 IMCRVYVGSISF----ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred CCCEEEEcCCCC----CCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 456899999999 999999999999999999999999999999999999999999999999984 45889999999
Q ss_pred eeccCCCCC-------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHH
Q 017735 94 KRTIPKGAV-------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD 166 (367)
Q Consensus 94 ~~~~~~~~~-------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~ 166 (367)
.+....... .......++|||.|||.++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|++
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 865432211 1122345799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccCCeeeEeeecCCCCCCC
Q 017735 167 LLAKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 167 Al~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
||+.||+.+|+++.|+|.++..+....
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 999999999999999999988765443
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.6e-29 Score=218.10 Aligned_cols=163 Identities=23% Similarity=0.476 Sum_probs=148.8
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEeec
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRT 96 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~~ 96 (367)
.+||.-|.. +++.++|++.|.+||+|.+++|++|.+|.++|||+||.|.+.++|+.||+.+ +-|..|.|+..|+
T Consensus 64 hvfvgdls~----eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 64 HVFVGDLSP----EIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eEEehhcch----hcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 578888888 9999999999999999999999999999999999999999999999999955 5888999999998
Q ss_pred cCCCCCC------------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHH
Q 017735 97 IPKGAVG------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAV 164 (367)
Q Consensus 97 ~~~~~~~------------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a 164 (367)
..+.... ....+.++|||+||+..++|++|++.|+.||+|.+|+|.++ ++||||.|++.|+|
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAA 213 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhH
Confidence 8775332 24567889999999999999999999999999999999988 68999999999999
Q ss_pred HHHHHhcCCcccCCeeeEeeecCCCCC
Q 017735 165 DDLLAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 165 ~~Al~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
.+||..+|+.+|.++.|++.|-+....
T Consensus 214 ahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCceeCceEEEEeccccCCC
Confidence 999999999999999999999876544
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2e-28 Score=235.06 Aligned_cols=167 Identities=26% Similarity=0.484 Sum_probs=152.1
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v 93 (367)
+.++|||.|||. ++++++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++||+. ...|.++.|.|
T Consensus 2 ~~~~l~V~nLp~----~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQ----TMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCC----CCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 467899999999 999999999999999999999999999999999999999999999999984 45889999999
Q ss_pred eeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
+++.+... ....++|||.|||.+++|++|+++|++||.|..+.|+.+..++.+++||||+|++.++|++||+.||+
T Consensus 78 ~~a~~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeeccccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 98865432 33567899999999999999999999999999999999988889999999999999999999999999
Q ss_pred cccCC--eeeEeeecCCCC
Q 017735 174 LELAG--AQVEVKKAEPKK 190 (367)
Q Consensus 174 ~~~~g--~~l~v~~a~~~~ 190 (367)
..+.+ .+|.|+++..+.
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 99876 678888887654
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=2.6e-28 Score=242.32 Aligned_cols=173 Identities=27% Similarity=0.481 Sum_probs=154.3
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
+++.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +...+.++.|.
T Consensus 86 ~~~~~~l~V~nlp~----~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLAL----KARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPII 161 (457)
T ss_pred ccCCcEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeE
Confidence 45678999999999 99999999999999999999999999999999999999999999999998 55688899999
Q ss_pred EeeccCCCCCC--------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHH
Q 017735 93 IKRTIPKGAVG--------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAV 164 (367)
Q Consensus 93 v~~~~~~~~~~--------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a 164 (367)
|+......... ......++|||.|||..+++++|+++|++||.|+.|.|+.+..++++++||||+|.++++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 87754332111 1123368999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 165 DDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 165 ~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
++||+.||+..|.+++|+|.++....
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCCC
Confidence 99999999999999999999988443
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.2e-27 Score=216.33 Aligned_cols=167 Identities=22% Similarity=0.372 Sum_probs=143.6
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcccc---CCeEEEEe
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHII---NGKQVEIK 94 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i---~g~~i~v~ 94 (367)
+.|||..||. ++.|++|.-+|++.|+|.+++||+|+.++.+||||||+|.+.++|++||+.++.. .++.|.|.
T Consensus 84 ~EVfvGkIPr----D~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 84 CEVFVGKIPR----DVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred ceEEecCCCc----cccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4799999998 9999999999999999999999999999999999999999999999999955422 67777665
Q ss_pred eccCCC----------CC--------------------------------------------------------------
Q 017735 95 RTIPKG----------AV-------------------------------------------------------------- 102 (367)
Q Consensus 95 ~~~~~~----------~~-------------------------------------------------------------- 102 (367)
.++.+. +.
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 433221 10
Q ss_pred -------------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 017735 103 -------------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169 (367)
Q Consensus 103 -------------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~ 169 (367)
.....+.+.|||.||+.++|||.|+++|++||.|++|+.++| ||||.|.+.++|.+|++
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 001223568999999999999999999999999999999977 99999999999999999
Q ss_pred hcCCcccCCeeeEeeecCCCCCCCCCC
Q 017735 170 KGNKLELAGAQVEVKKAEPKKPNLPQP 196 (367)
Q Consensus 170 ~l~g~~~~g~~l~v~~a~~~~~~~~~~ 196 (367)
.+|+.+|++..|+|.+|++.......+
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HhcCceecCceEEEEecCChhhhccch
Confidence 999999999999999999987665443
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.3e-27 Score=229.38 Aligned_cols=172 Identities=22% Similarity=0.365 Sum_probs=147.0
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCC--eEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IING--KQV 91 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g--~~i 91 (367)
...+|||.+|+. ++++++|+++|++||+|..++++.+..++.+++||||+|++.++|++||+.++ .+.+ .+|
T Consensus 88 ~~~~l~v~~l~~----~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i 163 (352)
T TIGR01661 88 KGANLYVSGLPK----TMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPI 163 (352)
T ss_pred ccceEEECCccc----cCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 345799999999 99999999999999999999999998888999999999999999999998554 4444 456
Q ss_pred EEeeccCCCCCC--------------------------------------------------------------------
Q 017735 92 EIKRTIPKGAVG-------------------------------------------------------------------- 103 (367)
Q Consensus 92 ~v~~~~~~~~~~-------------------------------------------------------------------- 103 (367)
.|+++.......
T Consensus 164 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR01661 164 TVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQR 243 (352)
T ss_pred EEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccccc
Confidence 666543221000
Q ss_pred --------------------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHH
Q 017735 104 --------------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQA 163 (367)
Q Consensus 104 --------------------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~ 163 (367)
.......+|||.|||++++|++|+++|++||.|++|+|+.|+.|++++|||||+|++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 244 ASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred CCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 001112369999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccCCeeeEeeecCCCCC
Q 017735 164 VDDLLAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 164 a~~Al~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
|.+||+.||+..|++++|+|+|+.++..
T Consensus 324 A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 324 AAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999988753
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.9e-26 Score=229.09 Aligned_cols=166 Identities=20% Similarity=0.384 Sum_probs=140.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCC-ccEEEEeeC-CCCCCcceEEEEEeCCHHHHHHHHhhcc----ccCC
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGE-ITDSVIMKD-RKTGQPRGFGFVTYADPSVVDKVIEDTH----IING 88 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~-i~~~~i~~~-~~tg~srG~afV~f~~~~~a~~al~~~~----~i~g 88 (367)
.+.++|||.||+. ++++++|+++|+++.+ ++++.++.. ..+.++++||||+|+++++|++|++.++ .+++
T Consensus 136 ~~~~rLFVgNLP~----~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~G 211 (578)
T TIGR01648 136 VDNCRLFVGGIPK----NKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 211 (578)
T ss_pred ccCceeEeecCCc----chhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecC
Confidence 3467899999999 9999999999999874 444444433 2345789999999999999999998543 5789
Q ss_pred eEEEEeeccCCCCCCC-CCCCcceEEEeCCCCCCCHHHHHHhhccC--CceeEEEEeeCCCCCCcccEEEEEeCCHHHHH
Q 017735 89 KQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 165 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~~-~~~~~~~l~V~~lp~~~te~~L~~~f~~~--G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~ 165 (367)
+.|.|.++.++..... ...+.++|||.||+++++|++|+++|++| |+|++|+++++ ||||+|+++++|+
T Consensus 212 r~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg--------fAFVeF~s~e~A~ 283 (578)
T TIGR01648 212 HVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD--------YAFVHFEDREDAV 283 (578)
T ss_pred ceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC--------eEEEEeCCHHHHH
Confidence 9999999887654433 23456899999999999999999999999 99999988743 9999999999999
Q ss_pred HHHHhcCCcccCCeeeEeeecCCCCCC
Q 017735 166 DLLAKGNKLELAGAQVEVKKAEPKKPN 192 (367)
Q Consensus 166 ~Al~~l~g~~~~g~~l~v~~a~~~~~~ 192 (367)
+||++||+.+|+++.|+|+|++++...
T Consensus 284 kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 284 KAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999999999999999876543
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.9e-28 Score=223.03 Aligned_cols=170 Identities=25% Similarity=0.430 Sum_probs=145.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc---ccCCe--EE
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH---IINGK--QV 91 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~---~i~g~--~i 91 (367)
.-++||..+|. .++|+||+++|++||.|.+|.|++|+.|+.++|+|||+|.+.++|.+|+..+| .|.+- .|
T Consensus 34 ~vKlfVgqIpr----t~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 34 AVKLFVGQIPR----TASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred hhhheeccCCc----cccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34688888888 99999999999999999999999999999999999999999999999888554 45553 44
Q ss_pred EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
.|+.+....+ .....++|||+-|+..++|.||+++|++||.|++|.|++| ..+.+||||||+|.+.|.|..||+.|
T Consensus 110 qvk~Ad~E~e---r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 110 QVKYADGERE---RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred eecccchhhh---ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhh
Confidence 5555543322 2256789999999999999999999999999999999999 47899999999999999999999999
Q ss_pred CCcc-cC--CeeeEeeecCCCCCCCC
Q 017735 172 NKLE-LA--GAQVEVKKAEPKKPNLP 194 (367)
Q Consensus 172 ~g~~-~~--g~~l~v~~a~~~~~~~~ 194 (367)
|+.. +. ..+|.|+||.+++++..
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchH
Confidence 8754 44 47899999999887643
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.1e-26 Score=236.24 Aligned_cols=166 Identities=22% Similarity=0.436 Sum_probs=148.3
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEee
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKR 95 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 95 (367)
.+|||.||+. ++|+++|+++|++||+|++|+|++|..|++++|||||+|.++++|++||+.+ ..|.++.|+|.+
T Consensus 1 ~sl~VgnLp~----~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 1 ASLYVGDLDP----DVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred CeEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 3799999999 9999999999999999999999999999999999999999999999999844 468999999988
Q ss_pred ccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcc
Q 017735 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~ 175 (367)
+..... .......+|||.|||.++++++|+++|++||.|..|+|+.+. ++++++||||+|+++++|++|+++||+..
T Consensus 77 s~~~~~--~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~ 153 (562)
T TIGR01628 77 SQRDPS--LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGML 153 (562)
T ss_pred cccccc--ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccE
Confidence 754322 223345689999999999999999999999999999999984 78899999999999999999999999999
Q ss_pred cCCeeeEeeecCCCC
Q 017735 176 LAGAQVEVKKAEPKK 190 (367)
Q Consensus 176 ~~g~~l~v~~a~~~~ 190 (367)
+.++.|.|.....+.
T Consensus 154 ~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 154 LNDKEVYVGRFIKKH 168 (562)
T ss_pred ecCceEEEecccccc
Confidence 999999997655443
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=6.2e-26 Score=230.71 Aligned_cols=169 Identities=24% Similarity=0.469 Sum_probs=149.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccC----CeE
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIIN----GKQ 90 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~----g~~ 90 (367)
.++|+|.||+. ++++++|+++|++||+|++++|+++. ++++++||||+|++.++|++|++.+ ..+. ++.
T Consensus 178 ~~~l~V~nl~~----~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~ 252 (562)
T TIGR01628 178 FTNLYVKNLDP----SVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKK 252 (562)
T ss_pred CCeEEEeCCCC----cCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEeccccccee
Confidence 45799999999 99999999999999999999999986 6889999999999999999999844 4666 888
Q ss_pred EEEeeccCCCCCC--------------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEE
Q 017735 91 VEIKRTIPKGAVG--------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI 156 (367)
Q Consensus 91 i~v~~~~~~~~~~--------------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV 156 (367)
|.|.++..+.... .......+|||.||++++++++|+++|++||.|++|+|+.| .++++++||||
T Consensus 253 l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV 331 (562)
T TIGR01628 253 LYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFV 331 (562)
T ss_pred eEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEE
Confidence 8887765543321 12345678999999999999999999999999999999999 68999999999
Q ss_pred EeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCC
Q 017735 157 TFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 157 ~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
+|+++++|++|++.||+..|.+++|.|.++..+..
T Consensus 332 ~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 332 CFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred EeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 99999999999999999999999999999987754
No 12
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=211.33 Aligned_cols=176 Identities=43% Similarity=0.763 Sum_probs=163.8
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~ 94 (367)
+..+++|..|+| +++++.|++.|.+|++|.+|.+|+|+.++++++|+||+|++++.+.++|. ..|.|+++.|+++
T Consensus 5 ~~~KlfiGgisw----~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSW----ETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCc----cccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccce
Confidence 678999999999 99999999999999999999999999999999999999999999999988 6789999999999
Q ss_pred eccCCCCCCC--CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 95 RTIPKGAVGS--KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 95 ~~~~~~~~~~--~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
.+.+...... ....+++|||+.||.++++++|++.|++|+.|..+.|+.|..+.++++|+||+|++++++++++.+ +
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~ 159 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-K 159 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-c
Confidence 9998876554 334688999999999999999999999999999999999999999999999999999999999976 7
Q ss_pred CcccCCeeeEeeecCCCCCCCCCC
Q 017735 173 KLELAGAQVEVKKAEPKKPNLPQP 196 (367)
Q Consensus 173 g~~~~g~~l~v~~a~~~~~~~~~~ 196 (367)
-++|+++.|+|+.|.+++...+..
T Consensus 160 f~~~~gk~vevkrA~pk~~~~~~~ 183 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQSTK 183 (311)
T ss_pred eeeecCceeeEeeccchhhccccc
Confidence 889999999999999998876554
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1.7e-25 Score=222.21 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=134.0
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--cc-CCeEEEE
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--II-NGKQVEI 93 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i-~g~~i~v 93 (367)
.++|||.||+. ++++++|+++|++||+|.+|+|++| .++++|+||||+|.++++|++||+.++ +| .++.|.|
T Consensus 58 ~~~lFVgnLp~----~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 58 GCEVFVGKIPR----DLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCEEEeCCCCC----CCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 36899999999 9999999999999999999999999 689999999999999999999999654 33 3555555
Q ss_pred eeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCc-eeEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~-v~~v~i~-~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
.++ ...++|||.|||.++++++|.++|+++.. |+++.++ .+....++++||||+|+++++|++|+++|
T Consensus 133 ~~S----------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 133 CIS----------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred ccc----------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 443 23589999999999999999999999863 4444333 33345678999999999999999999987
Q ss_pred CC--cccCCeeeEeeecCCCCC
Q 017735 172 NK--LELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 172 ~g--~~~~g~~l~v~~a~~~~~ 191 (367)
+. +.|.++.|+|+|+.++..
T Consensus 203 ~~gki~l~Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 203 MPGRIQLWGHVIAVDWAEPEEE 224 (578)
T ss_pred hccceEecCceEEEEeeccccc
Confidence 53 568899999999987654
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=194.93 Aligned_cols=166 Identities=27% Similarity=0.509 Sum_probs=148.3
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEeec
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRT 96 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~~ 96 (367)
.+.|--||. .+|++||+.+|..+|+|++|+|++|+.++.|.||+||.|.+++||++|+..++ .+..+.|+|..+
T Consensus 43 NLIvNYLPQ----~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 43 NLIVNYLPQ----NMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred eeeeeeccc----ccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 455555665 99999999999999999999999999999999999999999999999999544 677888888887
Q ss_pred cCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 97 ~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
.|. +...+...|||+.||..+|+.||+++|++||.|..-+|+.|..++.+||.+||.|+..++|++||+.||+..-
T Consensus 119 RPS----s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 119 RPS----SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred cCC----hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 654 4456778999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CC--eeeEeeecCCCCCC
Q 017735 177 AG--AQVEVKKAEPKKPN 192 (367)
Q Consensus 177 ~g--~~l~v~~a~~~~~~ 192 (367)
.+ .+|.|+++..+...
T Consensus 195 ~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCeEEEecCCcccc
Confidence 65 67999999876544
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6e-25 Score=207.88 Aligned_cols=172 Identities=23% Similarity=0.405 Sum_probs=153.3
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v 93 (367)
...||||.+||+ +++.++|.++|+.+|+|..|.++.++.+..+|||+||+|...+|++.|++... .|+++.|.|
T Consensus 4 ~g~TlfV~~lp~----~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 4 SGATLFVSRLPF----SSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred CCceEEEecCCC----ccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 448999999999 99999999999999999999999999999999999999999999999999544 599999999
Q ss_pred eeccCCCCCCC--------------------C--CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcc
Q 017735 94 KRTIPKGAVGS--------------------K--DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSR 151 (367)
Q Consensus 94 ~~~~~~~~~~~--------------------~--~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~ 151 (367)
..+.++..... . +.+..+|.|.||||.+.+.+|+.+|++||.|..|.|++.. .++.+
T Consensus 80 ~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklc 158 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLC 158 (678)
T ss_pred ccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCcc
Confidence 88766543321 1 2336789999999999999999999999999999999765 56677
Q ss_pred cEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCC
Q 017735 152 GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192 (367)
Q Consensus 152 G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 192 (367)
|||||.|.+..+|++||+.+|...|++|+|-|+||.++...
T Consensus 159 GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 159 GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 99999999999999999999999999999999999987643
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=1.4e-24 Score=218.37 Aligned_cols=174 Identities=19% Similarity=0.317 Sum_probs=138.3
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCcc------EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccc
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEIT------DSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHI 85 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~------~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~ 85 (367)
..++.++|||.||++ ++++++|+++|.++..+. .+.++.+....+.++||||+|.++++|++||+ +...
T Consensus 171 ~~~~~r~lyVgnLp~----~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPP----EFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CCccccEEEEeCCCC----CCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 345567999999999 999999999999752110 01112222223467899999999999999997 4457
Q ss_pred cCCeEEEEeeccCCCCCC-------------------------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEE
Q 017735 86 INGKQVEIKRTIPKGAVG-------------------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140 (367)
Q Consensus 86 i~g~~i~v~~~~~~~~~~-------------------------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~ 140 (367)
|.++.|.|.+........ ......++|||+|||..+++++|+++|++||.|+.+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 888888886543221000 0122357899999999999999999999999999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 141 i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
|+.+..++++++||||+|+++++|++||+.||+..|.++.|.|.++....
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999999999999999999999999999999999999999999986543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=2.7e-24 Score=214.06 Aligned_cols=161 Identities=11% Similarity=0.201 Sum_probs=137.4
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh----ccccCCeEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED----THIINGKQV 91 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~----~~~i~g~~i 91 (367)
++++|+|.||++ ++++++|+++|++||+|.+|+|+++ |++|||+|+++++|++|++. ...|.++.|
T Consensus 1 ps~vv~V~nLp~----~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l 70 (481)
T TIGR01649 1 PSPVVHVRNLPQ----DVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPA 70 (481)
T ss_pred CccEEEEcCCCC----CCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEE
Confidence 467999999999 9999999999999999999999864 46999999999999999983 347999999
Q ss_pred EEeeccCCCCCCC--------CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHH
Q 017735 92 EIKRTIPKGAVGS--------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQA 163 (367)
Q Consensus 92 ~v~~~~~~~~~~~--------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~ 163 (367)
.|+++..+..... ......+|||.||++++++++|+++|++||+|++|.|+++.. +++|||+|++.++
T Consensus 71 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~ 146 (481)
T TIGR01649 71 FFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNS 146 (481)
T ss_pred EEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHH
Confidence 9998865432111 112334799999999999999999999999999999987643 4689999999999
Q ss_pred HHHHHHhcCCcccCC--eeeEeeecCCCC
Q 017735 164 VDDLLAKGNKLELAG--AQVEVKKAEPKK 190 (367)
Q Consensus 164 a~~Al~~l~g~~~~g--~~l~v~~a~~~~ 190 (367)
|++|++.||+..|.+ +.|+|+|++...
T Consensus 147 A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 147 AQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 999999999999964 589999988654
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=7.6e-25 Score=180.90 Aligned_cols=171 Identities=25% Similarity=0.371 Sum_probs=154.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+..|+||.||+. .++++.|.++|-+.++|.++++.+|+-+...+|||||+|.++|+|+-|++ ++-++-+++|
T Consensus 6 rnqd~tiyvgnld~----kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDE----KVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred cCCCceEEEecCCH----HHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 45678999999999 99999999999999999999999999999999999999999999999999 5557889999
Q ss_pred EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~-v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
+|..+... .........|||+||..+++|..|.+.|+.||.|.. -+|+++..|+.+++|+||.|++.|++.+|++.
T Consensus 82 rv~kas~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 82 RVNKASAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred EEEecccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 99888722 223334589999999999999999999999998775 58899999999999999999999999999999
Q ss_pred cCCcccCCeeeEeeecCCCCC
Q 017735 171 GNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 171 l~g~~~~g~~l~v~~a~~~~~ 191 (367)
+|+..+..++|+|+.+..+..
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred hccchhcCCceEEEEEEecCC
Confidence 999999999999999887654
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=4.2e-24 Score=212.75 Aligned_cols=164 Identities=16% Similarity=0.308 Sum_probs=136.8
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
+..+|+|.||++. .+++++|+++|++||+|++|+|++++ ++||||+|.++++|++||+.+ +.|.++.|.|
T Consensus 274 ~~~~l~v~nL~~~---~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v 345 (481)
T TIGR01649 274 PGSVLMVSGLHQE---KVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRV 345 (481)
T ss_pred CCCEEEEeCCCCC---CCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 5579999999961 38999999999999999999999863 589999999999999999854 4789999999
Q ss_pred eeccCCCCCCC---------------------------------CCCCcceEEEeCCCCCCCHHHHHHhhccCCc--eeE
Q 017735 94 KRTIPKGAVGS---------------------------------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD--VQE 138 (367)
Q Consensus 94 ~~~~~~~~~~~---------------------------------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~--v~~ 138 (367)
..+........ ...++++|||.|||.+++|++|+++|++||. |+.
T Consensus 346 ~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ 425 (481)
T TIGR01649 346 CPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKK 425 (481)
T ss_pred EEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceE
Confidence 87643210000 0124579999999999999999999999998 888
Q ss_pred EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee------eEeeecCCC
Q 017735 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ------VEVKKAEPK 189 (367)
Q Consensus 139 v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~------l~v~~a~~~ 189 (367)
|++.... + .++++|||+|++.++|.+||..||++.|.++. |+|.+++++
T Consensus 426 ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 426 FKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 8887654 2 25789999999999999999999999999885 999888754
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=190.57 Aligned_cols=152 Identities=22% Similarity=0.466 Sum_probs=140.0
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 94 (367)
+..+||.||+. ++++.+|+.+|++|++|++|.|+++ |+||..+++..++.||.++| +|++..|.|+
T Consensus 2 ~~KLFIGNLp~----~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 2 PVKLFIGNLPR----EATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred ccchhccCCCc----ccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEE
Confidence 35789999999 9999999999999999999999975 99999999999999999876 8999999999
Q ss_pred eccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc
Q 017735 95 RTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 174 (367)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~ 174 (367)
.++.+ ...+.+|+|+||...++.+||++.|++||+|.+++|++| |+||.|+..++|..|++.||+.
T Consensus 70 aSksK------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 70 ASKSK------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred ecccc------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccc
Confidence 88766 345789999999999999999999999999999999987 9999999999999999999999
Q ss_pred ccCCeeeEeeecCCCCCCCC
Q 017735 175 ELAGAQVEVKKAEPKKPNLP 194 (367)
Q Consensus 175 ~~~g~~l~v~~a~~~~~~~~ 194 (367)
+|++++++|.++.++-...+
T Consensus 136 ~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 136 EFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred ccccceeeeeeeccccccCC
Confidence 99999999999988765443
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=199.07 Aligned_cols=170 Identities=24% Similarity=0.465 Sum_probs=146.5
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~ 94 (367)
.-.|+|.|||| .+...+|+.+|+.||.|.+|.|.+.+..+.+ |||||+|.+..+|.+||+ +.++|.+++|.|.
T Consensus 117 k~rLIIRNLPf----~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 117 KWRLIIRNLPF----KCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred cceEEeecCCc----ccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 45789999999 8888899999999999999999977754444 999999999999999999 6679999999999
Q ss_pred eccCCCCCCC-----------------------------------------C--C-------------------------
Q 017735 95 RTIPKGAVGS-----------------------------------------K--D------------------------- 106 (367)
Q Consensus 95 ~~~~~~~~~~-----------------------------------------~--~------------------------- 106 (367)
|+++++.... . +
T Consensus 192 WAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S 271 (678)
T KOG0127|consen 192 WAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESS 271 (678)
T ss_pred eecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccc
Confidence 9876532100 0 0
Q ss_pred ------------------CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 107 ------------------FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 107 ------------------~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
...++|||.|||+++||++|+++|++||+|..+.|+.++.|++++|.|||.|.+..+|.+||
T Consensus 272 ~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 272 GKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred ccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHH
Confidence 00148999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc-----CC-cccCCeeeEeeecCCCCC
Q 017735 169 AKG-----NK-LELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 169 ~~l-----~g-~~~~g~~l~v~~a~~~~~ 191 (367)
+.. .+ +.|++|.|.|..|..+.+
T Consensus 352 ~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 352 EAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HhcCccCCCceEEEeccEEeeeeccchHH
Confidence 875 23 678999999998877654
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=4e-23 Score=207.90 Aligned_cols=169 Identities=17% Similarity=0.244 Sum_probs=142.0
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
..++|||.||+. .+++++|+++|++||.|+.+.|++++.++.++|||||+|.+.++|++||+.+ ..|.++.|.|
T Consensus 294 ~~~~l~v~nlp~----~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v 369 (509)
T TIGR01642 294 SKDRIYIGNLPL----YLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV 369 (509)
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 356899999999 9999999999999999999999999999999999999999999999999844 5889999999
Q ss_pred eeccCCCCCC------------------------CCCCCcceEEEeCCCCCC----------CHHHHHHhhccCCceeEE
Q 017735 94 KRTIPKGAVG------------------------SKDFKTKKIFVGGIPSSV----------NEDEFKDFFMQFGDVQEH 139 (367)
Q Consensus 94 ~~~~~~~~~~------------------------~~~~~~~~l~V~~lp~~~----------te~~L~~~f~~~G~v~~v 139 (367)
+++....... ....++++|+|.||.... ..++|+++|++||.|+.|
T Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 370 QRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred EECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 8864321110 012356789999996421 236789999999999999
Q ss_pred EEeeCC---CCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 140 QIMRDH---STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 140 ~i~~~~---~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
.|+++. .+...+|+|||+|+++++|++||+.||+..|+++.|.|.+...
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 998752 3455689999999999999999999999999999999998654
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.8e-23 Score=186.44 Aligned_cols=172 Identities=22% Similarity=0.431 Sum_probs=152.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 94 (367)
...++|..+.+ ++.|+.|+..|..||+|++|.+.+|+.|.+.|+||||+|+-+|.|+.|++.+ ..+.++.|+|.
T Consensus 113 McRvYVGSIsf----El~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISF----ELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEE----EechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 35899999999 9999999999999999999999999999999999999999999999999944 58899999987
Q ss_pred eccCCCCCCC-------CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 017735 95 RTIPKGAVGS-------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167 (367)
Q Consensus 95 ~~~~~~~~~~-------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~A 167 (367)
+.......+. +...-++|||..++.+++|+||+.+|+.||+|++|.+.+++....+|||+||||++..+..+|
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 5433222111 233467999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccCCeeeEeeecCCCCCC
Q 017735 168 LAKGNKLELAGAQVEVKKAEPKKPN 192 (367)
Q Consensus 168 l~~l~g~~~~g~~l~v~~a~~~~~~ 192 (367)
|..||-+++.++-|+|-.+..+...
T Consensus 269 iasMNlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred hhhcchhhcccceEecccccCCCch
Confidence 9999999999999999877655443
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.5e-21 Score=169.62 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=144.6
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--c--cCCeEEE
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--I--INGKQVE 92 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~--i~g~~i~ 92 (367)
...++|..||. .+|.+||+.+|++||.|...+|+.|..|+.+||.+||.|...++|+.||+.++ + -.-.+|.
T Consensus 127 ~aNLYvSGlPk----tMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 127 DANLYVSGLPK----TMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred ccceEEecCCc----cchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 45788888888 99999999999999999999999999999999999999999999999999443 2 2235666
Q ss_pred EeeccCCCCCC-----------------------------------------------------------CCCCCcceEE
Q 017735 93 IKRTIPKGAVG-----------------------------------------------------------SKDFKTKKIF 113 (367)
Q Consensus 93 v~~~~~~~~~~-----------------------------------------------------------~~~~~~~~l~ 113 (367)
|+.+....... .......+||
T Consensus 203 VKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF 282 (360)
T KOG0145|consen 203 VKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF 282 (360)
T ss_pred EEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE
Confidence 76643221000 0011234899
Q ss_pred EeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 114 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 114 V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
|-||..+++|..|-++|.+||.|..|+|++|..|.+.|||+||++.+-++|..||..||+..+.++.|.|.+...+.
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977653
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.2e-21 Score=186.53 Aligned_cols=153 Identities=20% Similarity=0.450 Sum_probs=139.2
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEeec
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRT 96 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~~ 96 (367)
.++|. . ++|+..|.++|+.+++|++++|++|. | +.+||||.|.++++|++||+.+ ..+.+++|+|.|+
T Consensus 3 sl~vg---~----~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 3 SLYVG---P----DVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred ceecC---C----cCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 46666 3 89999999999999999999999999 7 9999999999999999999955 4899999999988
Q ss_pred cCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 97 ~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
...+.. |||.||+.+++..+|.++|+.||+|.+|+|+++.. + +++| ||+|+++++|++||++||+..+
T Consensus 73 ~rd~~~---------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 73 QRDPSL---------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred ccCCce---------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 765443 99999999999999999999999999999999964 4 9999 9999999999999999999999
Q ss_pred CCeeeEeeecCCCCCCC
Q 017735 177 AGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 177 ~g~~l~v~~a~~~~~~~ 193 (367)
.++.|.|.....+++..
T Consensus 141 ~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEERE 157 (369)
T ss_pred CCCeeEEeeccchhhhc
Confidence 99999998887776543
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=6.4e-21 Score=189.43 Aligned_cols=166 Identities=16% Similarity=0.276 Sum_probs=139.2
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 94 (367)
..+|||.||+. ++++++|+++|++||+|+.|.|++++.++++++||||+|.+.++|++|++.+ ..|.++.|.|.
T Consensus 186 ~~~l~v~nl~~----~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 186 FLKLYVGNLHF----NITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG 261 (457)
T ss_pred CCEEEEcCCCC----CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence 47899999999 9999999999999999999999999988899999999999999999999844 57899999998
Q ss_pred eccCCCCC------------------------------------------------------------------------
Q 017735 95 RTIPKGAV------------------------------------------------------------------------ 102 (367)
Q Consensus 95 ~~~~~~~~------------------------------------------------------------------------ 102 (367)
++......
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (457)
T TIGR01622 262 YAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYAT 341 (457)
T ss_pred EccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccc
Confidence 84311000
Q ss_pred ------------CC--CCCCcceEEEeCCCCCCC----------HHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEe
Q 017735 103 ------------GS--KDFKTKKIFVGGIPSSVN----------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158 (367)
Q Consensus 103 ------------~~--~~~~~~~l~V~~lp~~~t----------e~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F 158 (367)
.. ....+++|+|.||....+ ++||+++|++||.|+.|.|... ...|++||+|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F 417 (457)
T TIGR01622 342 GALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKF 417 (457)
T ss_pred cccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEE
Confidence 00 113456889999965544 3689999999999999998743 3578999999
Q ss_pred CCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 159 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 159 ~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
+++++|++|++.||+..|+++.|+|.+.....
T Consensus 418 ~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 418 SSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred CCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99999999999999999999999999876543
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=2e-22 Score=191.72 Aligned_cols=176 Identities=24% Similarity=0.409 Sum_probs=153.0
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
.+++.+|+|+..|+. .++..+|.++|+.++.|.+|.||.|..+.++|+.+||+|.+++++..||. ..+.+.+.+|
T Consensus 175 eERd~Rtvf~~qla~----r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv 250 (549)
T KOG0147|consen 175 EERDQRTVFCMQLAR----RNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPV 250 (549)
T ss_pred hHHhHHHHHHHHHhh----cCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCcee
Confidence 456778999999988 88899999999999999999999999999999999999999999999987 6667888999
Q ss_pred EEeeccCCCCCCC----------CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCH
Q 017735 92 EIKRTIPKGAVGS----------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 161 (367)
Q Consensus 92 ~v~~~~~~~~~~~----------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~ 161 (367)
.|+.......... -..+...|||+||+.+++|++|+.+|+.|+.|+.|.++.|..|+++++|+||+|.+.
T Consensus 251 ~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred EecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 8876543321110 122334499999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHhcCCcccCCeeeEeeecCCCCCC
Q 017735 162 QAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192 (367)
Q Consensus 162 ~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 192 (367)
++|++|+++||+++|-|+.|+|.....+...
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 9999999999999999999999876665443
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.1e-21 Score=169.30 Aligned_cols=174 Identities=18% Similarity=0.385 Sum_probs=146.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc---ccCC--e
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH---IING--K 89 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~---~i~g--~ 89 (367)
-+++++||.-|.. ..+|||++.+|..||+|++|.+++.+ ++.+||+|||.|.+..+|+.||..+| .+.+ .
T Consensus 17 ~~drklfvgml~k----qq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 17 GDDRKLFVGMLNK----QQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccchhhhhhhhcc----cccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 3678999999998 89999999999999999999999988 68999999999999999999999665 2222 2
Q ss_pred EEEEeeccCCCCC-------------------------------------------------------------------
Q 017735 90 QVEIKRTIPKGAV------------------------------------------------------------------- 102 (367)
Q Consensus 90 ~i~v~~~~~~~~~------------------------------------------------------------------- 102 (367)
.|.|+.+...++.
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 3444333211100
Q ss_pred --------------------------------------------------------------------------------
Q 017735 103 -------------------------------------------------------------------------------- 102 (367)
Q Consensus 103 -------------------------------------------------------------------------------- 102 (367)
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence
Q ss_pred ---------------------------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEE
Q 017735 103 ---------------------------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF 155 (367)
Q Consensus 103 ---------------------------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~af 155 (367)
..+-.+.+.|||-.||.+..+.||..+|-.||.|.+.+|..|+.|..+|+|.|
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceee
Confidence 00012345899999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCCC
Q 017735 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 156 V~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
|.|+++.++++||..||++.|.=++|+|.+.+++..+.
T Consensus 332 VSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred EecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999999988887653
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.9e-21 Score=167.39 Aligned_cols=140 Identities=19% Similarity=0.411 Sum_probs=119.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEI 93 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v 93 (367)
+.+++||+|.||.. ++||+-|..+|+++|+|++|+||.+. |.|
T Consensus 3 ~~~prtlyvgnld~----~vte~~i~~lf~qig~v~~~k~i~~e---------------------------------~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDS----TVTEDFIATLFNQIGSVTKTKVIFDE---------------------------------LKV 45 (321)
T ss_pred CCCCceEEeeccCh----hhHHHHHHHHHHhccccccceeehhh---------------------------------hcc
Confidence 45789999999999 99999999999999999999999762 122
Q ss_pred eeccCCCCCCC-CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 94 KRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 94 ~~~~~~~~~~~-~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
.++......+. ......-|||..|...++-++|++.|.+||+|.+++|++|..|.++|||+||.|.+.++|+.||+.||
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC
Confidence 22222211111 11124579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCeeeEeeecCCCC
Q 017735 173 KLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 173 g~~~~g~~l~v~~a~~~~ 190 (367)
+..|..|.|+..||..|.
T Consensus 126 GqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 126 GQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CeeeccceeeccccccCc
Confidence 999999999999998775
No 30
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=9.2e-20 Score=151.87 Aligned_cols=86 Identities=31% Similarity=0.655 Sum_probs=80.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
....++|||.|||++++|++|+++|++|++|++|+|+.|+.++++++||||+|+++++|++||+.||+++|++++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 017735 186 AEPKKP 191 (367)
Q Consensus 186 a~~~~~ 191 (367)
++++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=182.41 Aligned_cols=169 Identities=24% Similarity=0.436 Sum_probs=146.6
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCC---CcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEE
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTG---QPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 93 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg---~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v 93 (367)
++||.||++ +++.++|..+|...|.|.+|.|...+... .|.||+||+|.++++|++|++. .+.|++..|.|
T Consensus 517 ~lfvkNlnf----~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 517 KLFVKNLNF----DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred hhhhhcCCc----ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 499999999 99999999999999999999888765321 3669999999999999999996 46899999999
Q ss_pred eeccCCCCC-----CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 94 KRTIPKGAV-----GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 94 ~~~~~~~~~-----~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
+.+..++.. .+...+.++|.|.|||+.++..+|+++|..||.|.+|+|+.......++|||||+|.++.+|..|+
T Consensus 593 k~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 593 KISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred EeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 988722211 122334679999999999999999999999999999999987566778999999999999999999
Q ss_pred HhcCCcccCCeeeEeeecCCCCC
Q 017735 169 AKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 169 ~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
++|..+.|-+|.|.++|+.....
T Consensus 673 ~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 673 DALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HhhcccceechhhheehhccchH
Confidence 99999999999999999987643
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.1e-20 Score=176.96 Aligned_cols=176 Identities=22% Similarity=0.434 Sum_probs=155.1
Q ss_pred HHHhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--c
Q 017735 7 EILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--H 84 (367)
Q Consensus 7 ~~~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~ 84 (367)
++..+|..++++.++|.||+. +++.++|.++|+.||+|++|+|+++.+ + +++| ||+|+++++|++|++.+ .
T Consensus 66 ~~rim~s~rd~~~~~i~nl~~----~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ 138 (369)
T KOG0123|consen 66 PIRIMWSQRDPSLVFIKNLDE----SIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGM 138 (369)
T ss_pred EEEeehhccCCceeeecCCCc----ccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCc
Confidence 355678888888899999999 999999999999999999999999984 4 9999 99999999999999944 4
Q ss_pred ccCCeEEEEeeccCCCCCCCC----CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC
Q 017735 85 IINGKQVEIKRTIPKGAVGSK----DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 160 (367)
Q Consensus 85 ~i~g~~i~v~~~~~~~~~~~~----~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~ 160 (367)
.+.+++|.|-....+...... ......++|.+++.++++++|+++|.++++|..+.++.+. .+++++|+||+|++
T Consensus 139 ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~ 217 (369)
T KOG0123|consen 139 LLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFEN 217 (369)
T ss_pred ccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecC
Confidence 889999999777666544332 2345689999999999999999999999999999999985 56699999999999
Q ss_pred HHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 161 EQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 161 ~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
+++|..|++.||...+.+..+.|..+..+.
T Consensus 218 ~e~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 218 PEDAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred hhHHHHHHHhccCCcCCccceeecccccch
Confidence 999999999999999999999998887743
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.7e-19 Score=166.88 Aligned_cols=82 Identities=18% Similarity=0.462 Sum_probs=78.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
.|||.+||.+.-+.||...|..||.|+..++..|+.|+-++.|.||.|++..+|.+||..||+..|..++|+|.....+.
T Consensus 426 nlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 426 NLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred ceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred CC
Q 017735 191 PN 192 (367)
Q Consensus 191 ~~ 192 (367)
.+
T Consensus 506 np 507 (510)
T KOG0144|consen 506 NP 507 (510)
T ss_pred CC
Confidence 54
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=1.4e-17 Score=156.91 Aligned_cols=164 Identities=17% Similarity=0.336 Sum_probs=131.7
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-cccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-~~i~g~~i~v~ 94 (367)
....|.+..||| ++|++||+++|+.| .|+++++.+ .+++..|-|||+|+++|++++||++. ..+..+-|+|-
T Consensus 9 ~~~~vr~rGLPw----sat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 9 TAFEVRLRGLPW----SATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVF 81 (510)
T ss_pred cceEEEecCCCc----cccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEE
Confidence 455688899999 99999999999998 577755544 47999999999999999999999943 46777889887
Q ss_pred eccCCCCCC-------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeE-EEEeeCCCCCCcccEEEEEeCCHHHHHH
Q 017735 95 RTIPKGAVG-------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDD 166 (367)
Q Consensus 95 ~~~~~~~~~-------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~-v~i~~~~~~g~~~G~afV~F~~~~~a~~ 166 (367)
.+...+... ........|.+..||+.||++||.+||+-.-.|.. |.++.+ ..+++.+-|||.|++.+.|++
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHH
Confidence 764443211 12235668999999999999999999998766666 334444 567799999999999999999
Q ss_pred HHHhcCCcccCCeeeEeeecCC
Q 017735 167 LLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 167 Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
||.+ |...|..+-|+|..+..
T Consensus 161 Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 161 ALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHHH-HHHhhccceEEeehhHH
Confidence 9988 78889999999976553
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.4e-17 Score=138.10 Aligned_cols=151 Identities=20% Similarity=0.304 Sum_probs=126.8
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
.+.+.+|+|.|||. ++-+++|+++|-+|+.|.+|.|...+ ..-.||||+|+++.+|+.||. +...+++..|
T Consensus 3 gr~~~~iyvGNLP~----diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPG----DIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred CcccceEEecCCCc----chhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 35678999999999 99999999999999999999885433 355799999999999999998 6678999999
Q ss_pred EEeeccCCCCC----------------------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCC
Q 017735 92 EIKRTIPKGAV----------------------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR 149 (367)
Q Consensus 92 ~v~~~~~~~~~----------------------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~ 149 (367)
.|+++..-... .........|.|..||.+.+|+|||++..+.|.|....+.+|
T Consensus 76 RVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----- 150 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----- 150 (241)
T ss_pred EEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----
Confidence 99987544211 111223468999999999999999999999999999999887
Q ss_pred cccEEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 150 SRGFGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 150 ~~G~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
+...|+|...|+++-||.+|+...+..
T Consensus 151 --g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 151 --GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred --cceeeeeeehhhHHHHHHhhccccccC
Confidence 378999999999999999988766543
No 36
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.3e-17 Score=147.95 Aligned_cols=104 Identities=18% Similarity=0.373 Sum_probs=95.0
Q ss_pred EeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 93 IKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 93 v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
++.+.|.........+-+||||+.|+.+++|.+|++.|++||+|+.|.|+.|..|++++|||||+|+++.++.+|.++.+
T Consensus 85 l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 85 LKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred HHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 34456666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCeeeEeeecCCCCCCCCCC
Q 017735 173 KLELAGAQVEVKKAEPKKPNLPQP 196 (367)
Q Consensus 173 g~~~~g~~l~v~~a~~~~~~~~~~ 196 (367)
++.|+++.|.|+....+..+.+.|
T Consensus 165 G~~Idgrri~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 165 GIKIDGRRILVDVERGRTVKGWLP 188 (335)
T ss_pred CceecCcEEEEEeccccccccccc
Confidence 999999999999998888776665
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=2.5e-16 Score=135.61 Aligned_cols=165 Identities=17% Similarity=0.299 Sum_probs=133.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~ 92 (367)
.+..|++|.||...+..+.....|..+|++||.|.+|.+.+ |.+.||-|||.|.+.+.|..|+..++ .+-++.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 34459999999996655655666666999999999998886 45689999999999999999998554 66777777
Q ss_pred EeeccCCCCCC----------------------------------------------CCCCCcceEEEeCCCCCCCHHHH
Q 017735 93 IKRTIPKGAVG----------------------------------------------SKDFKTKKIFVGGIPSSVNEDEF 126 (367)
Q Consensus 93 v~~~~~~~~~~----------------------------------------------~~~~~~~~l~V~~lp~~~te~~L 126 (367)
|..+..+.+.- ....+...||+.|||.+++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 76654332110 11446678999999999999999
Q ss_pred HHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC-CeeeEeeecC
Q 017735 127 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAE 187 (367)
Q Consensus 127 ~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~-g~~l~v~~a~ 187 (367)
..+|++|.-.+.|+++..+ .+.|||+|.+...|..|...++...|- ..++.|.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999998764 569999999999999999998888876 7788887664
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=7.3e-16 Score=154.03 Aligned_cols=77 Identities=13% Similarity=0.321 Sum_probs=70.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 94 (367)
..+|||.||+. ++++++|+++|+.||+|++|+|++++.++++||||||+|++.++|++||+.+ .+|.++.|+|.
T Consensus 204 ~~rLfVgnLp~----~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 204 FNRIYVASVHP----DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred cceEEeecCCC----CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 46899999999 9999999999999999999999999989999999999999999999999955 47889999987
Q ss_pred ecc
Q 017735 95 RTI 97 (367)
Q Consensus 95 ~~~ 97 (367)
+++
T Consensus 280 kAi 282 (612)
T TIGR01645 280 KCV 282 (612)
T ss_pred ecC
Confidence 654
No 39
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=1.9e-16 Score=150.17 Aligned_cols=86 Identities=22% Similarity=0.417 Sum_probs=80.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.....++|||.+||+++||++|+++|++|++|++|+|+.|+.++++++||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 017735 185 KAEPKK 190 (367)
Q Consensus 185 ~a~~~~ 190 (367)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.66 E-value=3.6e-15 Score=138.47 Aligned_cols=166 Identities=22% Similarity=0.334 Sum_probs=138.2
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhc-cCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFG-KYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~-~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
..+.+||.|||+ ++...+|+++|. +.++|+.|.|+.|. ++++|++|.|||+++|.++||++ +.+++++++|.
T Consensus 43 r~R~vfItNIpy----d~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 43 RDRSVFITNIPY----DYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred ccceEEEecCcc----hhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 345699999999 898999999887 46899999999998 69999999999999999999999 44689999999
Q ss_pred EeeccCCCCC-----------------------------------------------CC---------------------
Q 017735 93 IKRTIPKGAV-----------------------------------------------GS--------------------- 104 (367)
Q Consensus 93 v~~~~~~~~~-----------------------------------------------~~--------------------- 104 (367)
|+.....+.. .+
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 9764321000 00
Q ss_pred -------------CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 105 -------------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 105 -------------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
..+...++||.||.+.+....|++.|.-.+.|+.|.+-.|++ +.+++||.|+|+.+-.|-+||.+|
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhh
Confidence 011234789999999999999999999999999999999975 589999999999999999999999
Q ss_pred CCcccCCeeeEeeecC
Q 017735 172 NKLELAGAQVEVKKAE 187 (367)
Q Consensus 172 ~g~~~~g~~l~v~~a~ 187 (367)
+..-+..++..+.+..
T Consensus 277 ~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 277 DRQGLFDRRMTVRLDR 292 (608)
T ss_pred ccCCCccccceeeccc
Confidence 9877777777776643
No 41
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=9.4e-16 Score=132.80 Aligned_cols=83 Identities=23% Similarity=0.440 Sum_probs=80.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.+.++|.|.||+.+++|++|+++|.+||.|.+|.|.+|+.|+.+||||||+|.+.++|.+||+.||++-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 017735 187 EPK 189 (367)
Q Consensus 187 ~~~ 189 (367)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.2e-15 Score=139.38 Aligned_cols=115 Identities=25% Similarity=0.404 Sum_probs=92.6
Q ss_pred CCHHHHHHHHhhccccCCeEEEEeeccCC------CCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeC
Q 017735 71 ADPSVVDKVIEDTHIINGKQVEIKRTIPK------GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144 (367)
Q Consensus 71 ~~~~~a~~al~~~~~i~g~~i~v~~~~~~------~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~ 144 (367)
.++++|.++|.+ -.+..|.|...+.+ .+........+.|||+.||.++.|++|..+|++.|+|.+++||.|
T Consensus 42 ~~~eaal~al~E---~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD 118 (506)
T KOG0117|consen 42 QSEEAALKALLE---RTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD 118 (506)
T ss_pred ccHHHHHHHHHH---hcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeec
Confidence 335666666553 23556666554433 222334567889999999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC-CeeeEeeecCC
Q 017735 145 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAEP 188 (367)
Q Consensus 145 ~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~-g~~l~v~~a~~ 188 (367)
+.++.+||||||+|++.++|++||+.||+++|. ++.|.|+.+..
T Consensus 119 ~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 119 PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 999999999999999999999999999999985 78888866543
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=1.6e-15 Score=110.24 Aligned_cols=70 Identities=33% Similarity=0.805 Sum_probs=67.3
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 112 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
|||.|||.++++++|+++|++|+.|..++++.+ .+++++++|||+|+++++|++|++.|++..|.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6888999999999999999999999999999999885
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=1.8e-15 Score=144.65 Aligned_cols=163 Identities=15% Similarity=0.261 Sum_probs=126.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 94 (367)
...++|.||.+ .+++++|+.+|+.|+.|+.|.+++|..|+++|+|+||+|.+.++|++|++. ..+|.|+.|+|.
T Consensus 278 ~~rl~vgnLHf----Nite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~ 353 (549)
T KOG0147|consen 278 MRRLYVGNLHF----NITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVS 353 (549)
T ss_pred hhhhhhccccc----CchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEE
Confidence 33489999999 999999999999999999999999999999999999999999999999884 458899999874
Q ss_pred eccCCCCCCC--------------------------------------------------------------------CC
Q 017735 95 RTIPKGAVGS--------------------------------------------------------------------KD 106 (367)
Q Consensus 95 ~~~~~~~~~~--------------------------------------------------------------------~~ 106 (367)
.-+.+..... +.
T Consensus 354 ~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 433 (549)
T KOG0147|consen 354 VVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPA 433 (549)
T ss_pred EeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcc
Confidence 3221100000 00
Q ss_pred -------CCcceEEEeCCCCCCC----------HHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 017735 107 -------FKTKKIFVGGIPSSVN----------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169 (367)
Q Consensus 107 -------~~~~~l~V~~lp~~~t----------e~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~ 169 (367)
.++.+|.+.|+=...+ .||+++.+.++|.|..|.|-++ +.|+.||.|.++++|..|+.
T Consensus 434 ~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~ 508 (549)
T KOG0147|consen 434 DASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVK 508 (549)
T ss_pred ccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHH
Confidence 1223333444322211 2677788899999998887554 34899999999999999999
Q ss_pred hcCCcccCCeeeEeeecCC
Q 017735 170 KGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 170 ~l~g~~~~g~~l~v~~a~~ 188 (367)
+||+.+|.++.|++.+-..
T Consensus 509 alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 509 ALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HHhhhhhccceeEEEEeeh
Confidence 9999999999999987543
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=7.8e-16 Score=133.83 Aligned_cols=147 Identities=22% Similarity=0.398 Sum_probs=121.8
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEee
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKR 95 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 95 (367)
..++|.+|++ .+.+++|..+|..|+.|.+|.+.. +|+||+|+++.+|+.|+..+ .+|.+..+.|.+
T Consensus 2 ~rv~vg~~~~----~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 2 PRVYIGRLPY----RARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred CceeecccCC----ccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 4689999999 999999999999999999887753 48899999999999999844 467776666666
Q ss_pred ccCCC------C-------C---CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeC
Q 017735 96 TIPKG------A-------V---GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159 (367)
Q Consensus 96 ~~~~~------~-------~---~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~ 159 (367)
+..+. . . .......+.|+|.+|+..+.|++|+++|++++++..+.++ +.++||+|+
T Consensus 70 ~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs 141 (216)
T KOG0106|consen 70 ARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFS 141 (216)
T ss_pred ccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeeh
Confidence 65320 0 1 1123456789999999999999999999999999666553 348999999
Q ss_pred CHHHHHHHHHhcCCcccCCeeeEee
Q 017735 160 TEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 160 ~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
+.++|.+||+.|++..+.++.|++.
T Consensus 142 ~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 142 EQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhhhhhhcchhccchhhcCceeeec
Confidence 9999999999999999999999993
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=119.47 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=78.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+++||||+||+..++||+|.++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|+.|++-++++.|+.++|+|+|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC
Q 017735 188 PK 189 (367)
Q Consensus 188 ~~ 189 (367)
.-
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 43
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=5.7e-15 Score=123.07 Aligned_cols=81 Identities=27% Similarity=0.554 Sum_probs=74.6
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v 93 (367)
..++|||.||++ ++++++|+++|++|++|++|+|++++.|+++++||||+|+++++|++||+. .++|+++.|+|
T Consensus 33 ~~~~lfVgnL~~----~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 33 MSTKLFIGGLSW----GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 466899999999 999999999999999999999999999999999999999999999999984 46899999999
Q ss_pred eeccCCC
Q 017735 94 KRTIPKG 100 (367)
Q Consensus 94 ~~~~~~~ 100 (367)
+++.++.
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 9887653
No 48
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.7e-15 Score=129.53 Aligned_cols=83 Identities=29% Similarity=0.561 Sum_probs=77.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.|..-++|||++|+|.+..|+|+++||+||+|+++.|++|+.++++|||+||+|.|.|+|.+|++. -+..|++|+..|+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 455668999999999999999999999999999999999999999999999999999999999988 4668999999999
Q ss_pred ecCC
Q 017735 185 KAEP 188 (367)
Q Consensus 185 ~a~~ 188 (367)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8765
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.1e-15 Score=123.39 Aligned_cols=78 Identities=19% Similarity=0.478 Sum_probs=72.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
-.++|||+||+..+++.||+.+|.+||+|..|+|..++ .+||||||+++.+|+.|+..|++..|.+..|+|++.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999999864 6899999999999999999999999999999999987
Q ss_pred CCC
Q 017735 188 PKK 190 (367)
Q Consensus 188 ~~~ 190 (367)
.+.
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 654
No 50
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=142.29 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=124.3
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i 91 (367)
.+..+.++|.|||. .+..++|..+|..||+|..+.|...-. -++|+|.++.+|.+|++.+. .+...++
T Consensus 382 ~rs~~vil~kNlpa----~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~pl 451 (725)
T KOG0110|consen 382 ERSDTVILVKNLPA----GTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPL 451 (725)
T ss_pred hhhcceeeeccCcc----ccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCcc
Confidence 34567889999999 999999999999999999885542221 58999999999999998553 2222222
Q ss_pred EEeecc-------CCC---------C----------------CCC-------------CCC-CcceEEEeCCCCCCCHHH
Q 017735 92 EIKRTI-------PKG---------A----------------VGS-------------KDF-KTKKIFVGGIPSSVNEDE 125 (367)
Q Consensus 92 ~v~~~~-------~~~---------~----------------~~~-------------~~~-~~~~l~V~~lp~~~te~~ 125 (367)
.+.++. ++. . ... .+. ..++|||.||+++++.++
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 221110 000 0 000 011 122499999999999999
Q ss_pred HHHhhccCCceeEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 126 FKDFFMQFGDVQEHQIMRDHSTS---RSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 126 L~~~f~~~G~v~~v~i~~~~~~g---~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
|..+|.+.|.|..|.|...+... .+.||+||+|.++++|++|+++|+++.|+++.|.|+++.
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999999988764321 245999999999999999999999999999999999998
No 51
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.56 E-value=1e-13 Score=125.69 Aligned_cols=168 Identities=18% Similarity=0.322 Sum_probs=134.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hcc
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITD--------SVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTH 84 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~ 84 (367)
+.++.|+|.+||. ++|.+++.++|++||-|.. |+|.++.. ++.||-|.+.|...++++.|++ +..
T Consensus 132 ~~Nt~VYVsgLP~----DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 132 KVNTSVYVSGLPL----DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred ccCceEEecCCCC----cccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcc
Confidence 4456799999999 9999999999999997643 88888874 9999999999999999999998 445
Q ss_pred ccCCeEEEEeeccCCC----------------------------------CCCCCCCCcceEEEeCCCCC----CC----
Q 017735 85 IINGKQVEIKRTIPKG----------------------------------AVGSKDFKTKKIFVGGIPSS----VN---- 122 (367)
Q Consensus 85 ~i~g~~i~v~~~~~~~----------------------------------~~~~~~~~~~~l~V~~lp~~----~t---- 122 (367)
.+.++.|.|+++.-.. ...+.....++|.|.||=.. .+
T Consensus 207 ~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred cccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 7889999997653210 00112234578888887432 22
Q ss_pred ---HHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCC
Q 017735 123 ---EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 123 ---e~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
+++|.+.+++||.|.+|.|...+ +.|.+.|.|.+.++|+.||+.|++..|++|.|+.+....+..
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 35677778999999999887543 578999999999999999999999999999999988766544
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.3e-14 Score=130.67 Aligned_cols=83 Identities=25% Similarity=0.496 Sum_probs=76.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.....++|+|+|||+..-|.||+.+|++||+|.+|+|+.+. --+|||+||+|+++++|++|-++||+..|.+|+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 45567899999999999999999999999999999999873 3479999999999999999999999999999999999
Q ss_pred ecCCC
Q 017735 185 KAEPK 189 (367)
Q Consensus 185 ~a~~~ 189 (367)
.++.+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98865
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.9e-14 Score=127.23 Aligned_cols=79 Identities=18% Similarity=0.348 Sum_probs=72.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
..++|||+|||+.++|++|+++|+.||+|++|+|+.++. +++||||+|+++++|+.||. |++..|.+++|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 357999999999999999999999999999999998864 47899999999999999995 89999999999999987
Q ss_pred CCC
Q 017735 188 PKK 190 (367)
Q Consensus 188 ~~~ 190 (367)
.-.
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 54
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.55 E-value=1.4e-14 Score=122.39 Aligned_cols=85 Identities=26% Similarity=0.451 Sum_probs=80.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.-..+|.|.||.+-++.++|+.+|++||.|-+|.|+.|+.|.++++||||.|.+..+|++|+++|++.+|+++.|+|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 017735 187 EPKKP 191 (367)
Q Consensus 187 ~~~~~ 191 (367)
+--.+
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 75544
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=3.2e-14 Score=103.68 Aligned_cols=70 Identities=27% Similarity=0.693 Sum_probs=64.9
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 112 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
|||.|||+++++++|+++|+.++.|..|.+..++. ++++++|||+|.++++|++|++.+++..|+++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 89999999999999999999999999999999875
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3e-14 Score=118.42 Aligned_cols=78 Identities=21% Similarity=0.558 Sum_probs=70.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
..++|||+|||.++-|.||+++|-||+.|..|+|...+ ....||||+|+++.+|+.||..-++..+++..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46899999999999999999999999999999987543 346799999999999999999999999999999999975
Q ss_pred C
Q 017735 188 P 188 (367)
Q Consensus 188 ~ 188 (367)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 3
No 57
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=2.4e-14 Score=113.02 Aligned_cols=91 Identities=22% Similarity=0.402 Sum_probs=84.7
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
+...+....|||.++...++|++|.+.|..||+|+.|.|..|+.|+-.+|||+|+|++.+.|++|++.||+..|.+++|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCC
Q 017735 183 VKKAEPKKPNL 193 (367)
Q Consensus 183 v~~a~~~~~~~ 193 (367)
|+|+-.+.+..
T Consensus 146 VDw~Fv~gp~~ 156 (170)
T KOG0130|consen 146 VDWCFVKGPER 156 (170)
T ss_pred EEEEEecCCcc
Confidence 99998776543
No 58
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=4e-14 Score=122.34 Aligned_cols=79 Identities=28% Similarity=0.572 Sum_probs=72.9
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc-ccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~-~i~g~~i~v~ 94 (367)
.-++|||.+|+| ++..++|+++|++||+|++.+|+.|+.|++||||+||+|.|.++|.+|+++.+ +|++|+..++
T Consensus 11 ~~TKifVggL~w----~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 11 TFTKIFVGGLAW----ETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCN 86 (247)
T ss_pred eEEEEEEcCccc----ccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccc
Confidence 456899999999 99999999999999999999999999999999999999999999999999654 8999999888
Q ss_pred eccC
Q 017735 95 RTIP 98 (367)
Q Consensus 95 ~~~~ 98 (367)
++..
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7643
No 59
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.4e-14 Score=121.11 Aligned_cols=85 Identities=31% Similarity=0.605 Sum_probs=81.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
...++|||+.|.++++|..|...|-+||.|++|.|+.|.++++.|+|+||+|+..|+|.+||..||..+|-++.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 017735 187 EPKKP 191 (367)
Q Consensus 187 ~~~~~ 191 (367)
+|...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98653
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=7.6e-15 Score=121.71 Aligned_cols=103 Identities=19% Similarity=0.447 Sum_probs=87.0
Q ss_pred ccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHH
Q 017735 85 IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAV 164 (367)
Q Consensus 85 ~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a 164 (367)
.|+.+.|..-.+. +......-..+.-|||++||+++||.||.-+|++||+|+.|.|++|..|++++||||+-|++..+.
T Consensus 12 ~lne~Elq~g~~~-~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRST 90 (219)
T KOG0126|consen 12 KLNERELQLGIAD-KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRST 90 (219)
T ss_pred HhhHHhhcccccc-ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccce
Confidence 3444544444333 233344555678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccCCeeeEeeecCC
Q 017735 165 DDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 165 ~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
..|+..||++.|.+|.|+|+....
T Consensus 91 ILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 91 ILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred EEEEeccCCceecceeEEeeeccc
Confidence 999999999999999999986543
No 61
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.7e-13 Score=96.75 Aligned_cols=72 Identities=31% Similarity=0.721 Sum_probs=67.5
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
+|||.+||..+++++|+++|++|++|..+.++.++ +.++++|||+|.+.++|++|++.+++..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 6788999999999999999999999999999999874
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=111.93 Aligned_cols=153 Identities=12% Similarity=0.194 Sum_probs=111.6
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeC-CCCCCcceEEEEEeCCHHHHHHHHhhcc--cc---CCe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKD-RKTGQPRGFGFVTYADPSVVDKVIEDTH--II---NGK 89 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~tg~srG~afV~f~~~~~a~~al~~~~--~i---~g~ 89 (367)
..+|+||..||. ++...||..+|..|--.+.+.|... +.....+-++||+|.+.++|.+|++.++ .+ ...
T Consensus 33 ~VRTLFVSGLP~----DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 33 AVRTLFVSGLPN----DVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccceeeeccCCc----ccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 468999999999 9999999999999976666665543 3334567899999999999999998554 22 234
Q ss_pred EEEEeeccCCCCCCC---------------------------------------------------C-------------
Q 017735 90 QVEIKRTIPKGAVGS---------------------------------------------------K------------- 105 (367)
Q Consensus 90 ~i~v~~~~~~~~~~~---------------------------------------------------~------------- 105 (367)
.|.|+.+++...... .
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 455544332211000 0
Q ss_pred ------------------CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 017735 106 ------------------DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167 (367)
Q Consensus 106 ------------------~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~A 167 (367)
.....||||.||..+++|++|+.+|+.|--...++|... .+ -..|||+|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHH
Confidence 001238999999999999999999999977766666432 22 34799999999999999
Q ss_pred HHhcCCccc
Q 017735 168 LAKGNKLEL 176 (367)
Q Consensus 168 l~~l~g~~~ 176 (367)
+..|++..|
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 988877655
No 63
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3.3e-13 Score=127.27 Aligned_cols=80 Identities=23% Similarity=0.451 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCH--HHHHHHHHhcCCcccCCeeeEe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE--QAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~--~~a~~Al~~l~g~~~~g~~l~v 183 (367)
.....+|||+||++.++++||+++|.+||.|.+|.|+ +.++ |+||||+|.+. +++++||+.||+.++.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456899999999999999999999999999999999 4566 99999999987 7899999999999999999999
Q ss_pred eecCCC
Q 017735 184 KKAEPK 189 (367)
Q Consensus 184 ~~a~~~ 189 (367)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 988753
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.44 E-value=5.3e-13 Score=124.19 Aligned_cols=82 Identities=24% Similarity=0.494 Sum_probs=75.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHhh-ccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f-~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
..+.+||.|||+++.|++||++| ++.++|+.|+|+.| .++++|+||+|||+++|.+++|+++||++++.+++|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 44669999999999999999999 68899999999999 57999999999999999999999999999999999999876
Q ss_pred CCCC
Q 017735 187 EPKK 190 (367)
Q Consensus 187 ~~~~ 190 (367)
...+
T Consensus 122 ~d~q 125 (608)
T KOG4212|consen 122 HDEQ 125 (608)
T ss_pred Cchh
Confidence 6543
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=6.7e-13 Score=116.72 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=70.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
...+|||.||++.+||++|+++|+.||+|++|+|++|.. .++||||+|+++++|+.|| .|++.+|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 457999999999999999999999999999999998843 4579999999999999999 679999999999998876
Q ss_pred CC
Q 017735 188 PK 189 (367)
Q Consensus 188 ~~ 189 (367)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=119.76 Aligned_cols=147 Identities=20% Similarity=0.434 Sum_probs=116.0
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 94 (367)
..+|||.||+. ++++++|+++|.+|+.|..+.|..++.++++++||||+|.++++|..|++.+ ..+.++.|.|.
T Consensus 115 ~~~l~v~nL~~----~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPY----DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCC----CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 58999999998 9999999999999999999999999989999999999999999999999944 48899999998
Q ss_pred ecc----CCCCCC----------------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEE
Q 017735 95 RTI----PKGAVG----------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 154 (367)
Q Consensus 95 ~~~----~~~~~~----------------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~a 154 (367)
... ++.... ........+++.+++..++..++..+|..++.+..+.+...........+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (306)
T COG0724 191 KAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRS 270 (306)
T ss_pred ccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCccccccc
Confidence 854 222211 123356689999999999999999999999999877777664433333333
Q ss_pred EEEeCCHHHHHHH
Q 017735 155 FITFDTEQAVDDL 167 (367)
Q Consensus 155 fV~F~~~~~a~~A 167 (367)
++.+.....+..+
T Consensus 271 ~~~~~~~~~~~~~ 283 (306)
T COG0724 271 FVGNEASKDALES 283 (306)
T ss_pred ccchhHHHhhhhh
Confidence 3333333333333
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3e-12 Score=116.75 Aligned_cols=167 Identities=13% Similarity=0.250 Sum_probs=128.6
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
+.-..++|..+.. +.+++||+.+|+.||+|+.|.+.+++.+...|||+||+|.+..+...|+. ++.++.++-|+
T Consensus 208 k~fnRiYVaSvHp----DLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLR 283 (544)
T KOG0124|consen 208 KKFNRIYVASVHP----DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLR 283 (544)
T ss_pred HhhheEEeeecCC----CccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEe
Confidence 3456789988888 99999999999999999999999999888999999999999999999998 44577888888
Q ss_pred EeeccCCCCC----------------------------------------------------------------------
Q 017735 93 IKRTIPKGAV---------------------------------------------------------------------- 102 (367)
Q Consensus 93 v~~~~~~~~~---------------------------------------------------------------------- 102 (367)
|-.++.....
T Consensus 284 VGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pg 363 (544)
T KOG0124|consen 284 VGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPG 363 (544)
T ss_pred cccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCc
Confidence 7443221100
Q ss_pred ------------CC----------------------------------------------------------------CC
Q 017735 103 ------------GS----------------------------------------------------------------KD 106 (367)
Q Consensus 103 ------------~~----------------------------------------------------------------~~ 106 (367)
+. +.
T Consensus 364 vi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~ 443 (544)
T KOG0124|consen 364 VITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRK 443 (544)
T ss_pred eeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhcc
Confidence 00 00
Q ss_pred CCcceEEEeCC--CCCCC---HHHHHHhhccCCceeEEEEeeCCCCCCc----ccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 107 FKTKKIFVGGI--PSSVN---EDEFKDFFMQFGDVQEHQIMRDHSTSRS----RGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 107 ~~~~~l~V~~l--p~~~t---e~~L~~~f~~~G~v~~v~i~~~~~~g~~----~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
..++.|.+.|+ |.+++ |.+|.+.+.+||.|.+|.|...+.+... ----||+|....++.+|++.|++..|.
T Consensus 444 ~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFg 523 (544)
T KOG0124|consen 444 QESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFG 523 (544)
T ss_pred ccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceec
Confidence 11224556665 33343 4578899999999999999877654422 224699999999999999999999999
Q ss_pred CeeeEeee
Q 017735 178 GAQVEVKK 185 (367)
Q Consensus 178 g~~l~v~~ 185 (367)
+++|..+.
T Consensus 524 Gr~VvAE~ 531 (544)
T KOG0124|consen 524 GRKVVAEV 531 (544)
T ss_pred Cceeehhh
Confidence 99988764
No 68
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=7.6e-13 Score=95.26 Aligned_cols=71 Identities=35% Similarity=0.755 Sum_probs=67.0
Q ss_pred EeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 114 VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 114 V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
|.|||..+++++|+++|++||.|..+.+..++.+.+++++|||+|.+.++|++|++.|++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999988888999999999999999999999999999999998874
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.42 E-value=4.3e-12 Score=117.42 Aligned_cols=160 Identities=15% Similarity=0.243 Sum_probs=128.2
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~ 94 (367)
+.++.|.||... .+|++.|..+|..||+|..|+|+.++.+ .|.|++.+...|+-|++ +.+.+.++.|+|.
T Consensus 297 n~vllvsnln~~---~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEE---AVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchh---ccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 567778888763 6889999999999999999999998764 79999999999999999 5578999999997
Q ss_pred eccCCCCCCC-------------------------------CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEee
Q 017735 95 RTIPKGAVGS-------------------------------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143 (367)
Q Consensus 95 ~~~~~~~~~~-------------------------------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~ 143 (367)
.++....... -.+++.+|.+.|+|.+++||+|+++|.+-|-+.+.....
T Consensus 369 ~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff 448 (492)
T KOG1190|consen 369 LSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF 448 (492)
T ss_pred eccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec
Confidence 6543321100 124567999999999999999999998877655443322
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC-eeeEeeecCC
Q 017735 144 DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEVKKAEP 188 (367)
Q Consensus 144 ~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g-~~l~v~~a~~ 188 (367)
++.+-+|++.++++|+|..|+..++.+.+.. ..|+|++++.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 1224599999999999999999999999875 5899998765
No 70
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.9e-12 Score=125.53 Aligned_cols=167 Identities=20% Similarity=0.347 Sum_probs=125.2
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 94 (367)
...++|.+|+. ..++++++++++.|+++....++.+..++.+++|||.+|.++.....|+..++ .+..+.|.|.
T Consensus 289 ~~ki~v~~lp~----~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 289 PNKIFVGGLPL----YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cchhhhccCcC----ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 45788888888 88999999999999999999999999999999999999999999999998443 5666777776
Q ss_pred eccCCCCCCC--------------------CCCCcceEEEeCCCC--CC-CH-------HHHHHhhccCCceeEEEEeeC
Q 017735 95 RTIPKGAVGS--------------------KDFKTKKIFVGGIPS--SV-NE-------DEFKDFFMQFGDVQEHQIMRD 144 (367)
Q Consensus 95 ~~~~~~~~~~--------------------~~~~~~~l~V~~lp~--~~-te-------~~L~~~f~~~G~v~~v~i~~~ 144 (367)
.+.+...... ...++..|.+.|+=. ++ ++ |+++..+.+|+.|..|.|+++
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 6544322111 111222333332211 11 11 345566678999999999887
Q ss_pred C---CCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 145 H---STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 145 ~---~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
. ...-..|..||||++.+++++|+++|++..|.++.|.+.+-.
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 2 223346779999999999999999999999999999987744
No 71
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.39 E-value=5.5e-13 Score=110.87 Aligned_cols=83 Identities=29% Similarity=0.511 Sum_probs=78.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
....||||+||+..++++.|.++|-+.++|.++.|++|+.+...+|||||||.++|+|+-|++-||.+.|-+++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 017735 187 EPK 189 (367)
Q Consensus 187 ~~~ 189 (367)
...
T Consensus 87 s~~ 89 (203)
T KOG0131|consen 87 SAH 89 (203)
T ss_pred ccc
Confidence 843
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=3.3e-12 Score=116.98 Aligned_cols=80 Identities=35% Similarity=0.767 Sum_probs=77.3
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
..+|||+|||.++++++|+++|.+|+.|..|.|+.++.++++++||||+|.++++|..|++.+++..|.+++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999999999654
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=3.6e-12 Score=96.31 Aligned_cols=81 Identities=15% Similarity=0.329 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
...++.|||.|||.++|.|++.++|.+||.|..|+|-.++.| +|.|||.|++..+|++|++.|++..+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 345678999999999999999999999999999999887665 89999999999999999999999999999999987
Q ss_pred cCCC
Q 017735 186 AEPK 189 (367)
Q Consensus 186 a~~~ 189 (367)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6654
No 74
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=4.8e-12 Score=91.91 Aligned_cols=74 Identities=35% Similarity=0.740 Sum_probs=68.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
+|+|.+||..+++++|+++|+.++.|..+.+..++.+ +++++|||+|.+.++|..|++.+++..++++.|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988655 7789999999999999999999999999999999864
No 75
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2e-12 Score=112.35 Aligned_cols=81 Identities=23% Similarity=0.396 Sum_probs=74.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
.+..++.|.||+. ++++++|+++|..||.|..|.|.+|+.|+.+||||||+|.+.++|.+||+.+ +-++.-.|.
T Consensus 187 ~D~~tvRvtNLse----d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 187 DDEATVRVTNLSE----DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred CccceeEEecCcc----ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 4678999999999 9999999999999999999999999999999999999999999999999955 466777888
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|+|+.|+
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 8888775
No 76
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-11 Score=117.92 Aligned_cols=164 Identities=23% Similarity=0.384 Sum_probs=122.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCC--Ccce---EEEEEeCCHHHHHHHHhhcc-------
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTG--QPRG---FGFVTYADPSVVDKVIEDTH------- 84 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg--~srG---~afV~f~~~~~a~~al~~~~------- 84 (367)
.+.|||..|++ +++|++|...|..||++..-...+....+ .++| |+|+.|+++.++++.|....
T Consensus 259 S~KVFvGGlp~----dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 259 SRKVFVGGLPW----DITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred ccceeecCCCc----cccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 45899999999 99999999999999988644443222222 2567 99999999999998877332
Q ss_pred ------ccCCeEEEEeeccCCC-----CCCCCCCCcceEEEeCCCCCCCHHHHHHhhc-cCCceeEEEEeeCCCCCCccc
Q 017735 85 ------IINGKQVEIKRTIPKG-----AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM-QFGDVQEHQIMRDHSTSRSRG 152 (367)
Q Consensus 85 ------~i~g~~i~v~~~~~~~-----~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~-~~G~v~~v~i~~~~~~g~~~G 152 (367)
.+..+.|+|..+...+ .....-.+.+||||+.||.-++.++|..+|+ .||.|..|-|-+|++-.-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 1222223332221111 1123445789999999999999999999998 799999999999988899999
Q ss_pred EEEEEeCCHHHHHHHHHh----cCCcccCCeeeEeee
Q 017735 153 FGFITFDTEQAVDDLLAK----GNKLELAGAQVEVKK 185 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~----l~g~~~~g~~l~v~~ 185 (367)
-+=|+|.+..+-.+||++ |+..+|+- +|+|+.
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEIkP 450 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEIKP 450 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccce-eeeecc
Confidence 999999999999999985 44444443 666653
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=2.2e-12 Score=124.43 Aligned_cols=82 Identities=28% Similarity=0.539 Sum_probs=79.6
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
++|||+|||++++|++|.++|+..+.|..++++.|++|++++||+||+|.+.++|+.|++.||+.++.+++|+|+|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 017735 190 KP 191 (367)
Q Consensus 190 ~~ 191 (367)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 78
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=2.6e-12 Score=124.61 Aligned_cols=171 Identities=21% Similarity=0.388 Sum_probs=135.5
Q ss_pred hhhccccccceEeccCCCCCCchhhHHHHHHhhccC------------CCccEEEEeeCCCCCCcceEEEEEeCCHHHHH
Q 017735 10 TMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKY------------GEITDSVIMKDRKTGQPRGFGFVTYADPSVVD 77 (367)
Q Consensus 10 ~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~------------G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~ 77 (367)
.+....+...++|.++++ .++++++..+|..- -++..|.|-..+ .|||++|.+.++|.
T Consensus 168 ~~~~t~q~~r~~v~~~~~----~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at 237 (500)
T KOG0120|consen 168 DSQATRQARRLYVGNIPF----TSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEAT 237 (500)
T ss_pred CcchhhhhhhhcccccCC----ccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchh
Confidence 334445566788899988 88888888877753 124555555444 49999999999999
Q ss_pred HHHh-hccccCCeEEEEeeccCCCCC-------------------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCcee
Q 017735 78 KVIE-DTHIINGKQVEIKRTIPKGAV-------------------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ 137 (367)
Q Consensus 78 ~al~-~~~~i~g~~i~v~~~~~~~~~-------------------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~ 137 (367)
.|+. ....+.++.+.+......... ........++||++||..+++++++|+.+.|++++
T Consensus 238 ~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk 317 (500)
T KOG0120|consen 238 EAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLK 317 (500)
T ss_pred hhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccch
Confidence 9988 444667777776554332211 11233456899999999999999999999999999
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 138 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 138 ~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
...++.|..++.+++|||.+|.++.....|+..||+..+.+++|.|..|....
T Consensus 318 ~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 318 AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999999999999999999999999999999999999998876543
No 79
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.2e-12 Score=116.25 Aligned_cols=87 Identities=16% Similarity=0.368 Sum_probs=82.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
..++.+.|||-.|...++++||.-+|+.||+|..|.|++|+.|+.+--||||||++.+++++|.-+|++..|+++.|+|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
++.+...
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9876655
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.31 E-value=2.7e-11 Score=110.96 Aligned_cols=161 Identities=14% Similarity=0.199 Sum_probs=126.5
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh----hccccCCeEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE----DTHIINGKQV 91 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~----~~~~i~g~~i 91 (367)
++..+.|.+|.. .++|.+|.+.++.||+|..+.+|..+. .|.|+|++.+.|+.++. +...+.++..
T Consensus 30 ~spvvhvr~l~~----~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 30 PSPVVHVRGLHQ----GVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCceEEEecccc----ccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchh
Confidence 455788999998 999999999999999999888887654 79999999999999876 3346677777
Q ss_pred EEeeccCCCCCCC---CCCCcce--EEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHH
Q 017735 92 EIKRTIPKGAVGS---KDFKTKK--IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD 166 (367)
Q Consensus 92 ~v~~~~~~~~~~~---~~~~~~~--l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~ 166 (367)
.+..++++..... ...+.+. +-|-|--+.+|.+.|..++...|+|.+|.|++. + ---|.|||++.++|++
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQR 174 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHH
Confidence 6666544432221 1122233 345666677999999999999999999999875 2 2369999999999999
Q ss_pred HHHhcCCcccCC--eeeEeeecCCCCC
Q 017735 167 LLAKGNKLELAG--AQVEVKKAEPKKP 191 (367)
Q Consensus 167 Al~~l~g~~~~g--~~l~v~~a~~~~~ 191 (367)
|.+.||+.+|-. .+|+|++|++..-
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred HHhhcccccccccceeEEEEecCccee
Confidence 999999999864 7899999988654
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.30 E-value=2e-10 Score=109.14 Aligned_cols=162 Identities=16% Similarity=0.278 Sum_probs=122.8
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITD-SVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~-~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~ 94 (367)
..+|.+..||+ .+|++||.++|+-.-.|.+ |.++.++ .+++.+-|||.|++.++|++||. +...|..+-|+|.
T Consensus 103 d~vVRLRGLPf----scte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 103 DGVVRLRGLPF----SCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVF 177 (510)
T ss_pred CceEEecCCCc----cCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEee
Confidence 45788999999 9999999999998866655 4455555 46799999999999999999998 5556777888774
Q ss_pred eccCC-------------------CC----C----------------------------------CC-------------
Q 017735 95 RTIPK-------------------GA----V----------------------------------GS------------- 104 (367)
Q Consensus 95 ~~~~~-------------------~~----~----------------------------------~~------------- 104 (367)
++... .. . ..
T Consensus 178 ~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~ 257 (510)
T KOG4211|consen 178 RSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDP 257 (510)
T ss_pred hhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccc
Confidence 32100 00 0 00
Q ss_pred ---C----------------CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHH
Q 017735 105 ---K----------------DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 165 (367)
Q Consensus 105 ---~----------------~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~ 165 (367)
. ......++...||+..++.+|.++|+..-.+ .|.|... .+++..+-|+|+|++.++|.
T Consensus 258 ~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav 335 (510)
T KOG4211|consen 258 NYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAV 335 (510)
T ss_pred ccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhH
Confidence 0 0011467889999999999999999877555 6666655 57899999999999999999
Q ss_pred HHHHhcCCcccCCeeeEeeec
Q 017735 166 DLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 166 ~Al~~l~g~~~~g~~l~v~~a 186 (367)
.|+.+ ++..+..+-|++-..
T Consensus 336 ~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 336 GAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred hhhcc-CCcccCcceeeeccc
Confidence 99987 777777777776543
No 82
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.30 E-value=1e-11 Score=90.00 Aligned_cols=68 Identities=21% Similarity=0.525 Sum_probs=60.9
Q ss_pred eEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 20 QKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 20 ~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
|+|.|||. ++++++|+++|++||.|..+.++.+ .+++++++|||+|++.++|++|++.+ ..+.+++|+
T Consensus 1 l~v~nlp~----~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPP----DVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETT----TSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCC----cCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 68999999 9999999999999999999999998 57889999999999999999999944 467776653
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=3.9e-12 Score=113.42 Aligned_cols=77 Identities=21% Similarity=0.446 Sum_probs=71.1
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~ 94 (367)
-.||||.-|+. +++|.+|++.|+.||+|+.|+|++++.|++++|||||+|+++.++.+|.+ +..+|+++.|.|.
T Consensus 101 y~TLFv~RLny----dT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 101 YKTLFVARLNY----DTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cceeeeeeccc----cccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 35999999999 99999999999999999999999999999999999999999999999998 4458999999887
Q ss_pred ecc
Q 017735 95 RTI 97 (367)
Q Consensus 95 ~~~ 97 (367)
...
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 654
No 84
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.1e-12 Score=99.18 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=73.9
Q ss_pred hhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCC
Q 017735 11 MFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIING 88 (367)
Q Consensus 11 ~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g 88 (367)
+-..+.+.||+|.||++ .++|++|.++|+++|+|..|.|=.|+.++.+-|||||+|-+.++|+.|++ +...++.
T Consensus 30 ~~a~r~S~tvyVgNlSf----yttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSF----YTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred HHHHhhcceEEEeeeee----eecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence 33446789999999999 99999999999999999999999999999999999999999999999999 5567888
Q ss_pred eEEEEeec
Q 017735 89 KQVEIKRT 96 (367)
Q Consensus 89 ~~i~v~~~ 96 (367)
+.|.+.+.
T Consensus 106 r~ir~D~D 113 (153)
T KOG0121|consen 106 RPIRIDWD 113 (153)
T ss_pred cceeeecc
Confidence 88888765
No 85
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.2e-11 Score=90.05 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=56.0
Q ss_pred HHHHHHhhc----cCCceeEEE-EeeCCCC--CCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 123 EDEFKDFFM----QFGDVQEHQ-IMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 123 e~~L~~~f~----~~G~v~~v~-i~~~~~~--g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
+++|+++|+ +||.|.+|. |+.++.+ +++++|+||+|+++++|++|++.||+..+.+++|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999995 7777666 8999999999999999999999999999999999873
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.29 E-value=3e-12 Score=108.49 Aligned_cols=79 Identities=25% Similarity=0.511 Sum_probs=72.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
..+.+|.|.||.+ .++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|++.+ .+|+++.|.
T Consensus 11 ~gm~SLkVdNLTy----RTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 11 EGMTSLKVDNLTY----RTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred ccceeEEecceec----cCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 3567899999999 9999999999999999999999999999999999999999999999999944 589999998
Q ss_pred Eeecc
Q 017735 93 IKRTI 97 (367)
Q Consensus 93 v~~~~ 97 (367)
|+++.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 87763
No 87
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=4.8e-12 Score=112.44 Aligned_cols=74 Identities=27% Similarity=0.636 Sum_probs=70.6
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
.+|||+|||.++++++|+.+|++||+|.+|+|+++ |+||..++..+++.||..||+.+|++..|.|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999999988
Q ss_pred CC
Q 017735 190 KP 191 (367)
Q Consensus 190 ~~ 191 (367)
..
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=7.8e-12 Score=112.82 Aligned_cols=83 Identities=19% Similarity=0.440 Sum_probs=73.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~ 92 (367)
..++.|+|.|||+ ..-+-||+.+|++||.|.+|.||.+. .-||||+||+|++++||++|.+++| .|+||+|+
T Consensus 94 ~~pkRLhVSNIPF----rFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 94 DTPKRLHVSNIPF----RFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCceeEeecCCc----cccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3467899999999 88999999999999999999999875 4699999999999999999999776 89999999
Q ss_pred EeeccCCCCCC
Q 017735 93 IKRTIPKGAVG 103 (367)
Q Consensus 93 v~~~~~~~~~~ 103 (367)
|..++++-..+
T Consensus 168 Vn~ATarV~n~ 178 (376)
T KOG0125|consen 168 VNNATARVHNK 178 (376)
T ss_pred EeccchhhccC
Confidence 99988764333
No 89
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=5.5e-12 Score=115.77 Aligned_cols=166 Identities=17% Similarity=0.297 Sum_probs=125.0
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccC----CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-cccCCeE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKY----GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQ 90 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~----G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-~~i~g~~ 90 (367)
+.-.|.+..||+ ++++.++.++|... +-++.|.+++.+ +++..|-|||.|..+++|++||.+. ..+..+-
T Consensus 160 ~qvivRmRGLPf----dat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRY 234 (508)
T KOG1365|consen 160 NQVIVRMRGLPF----DATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRY 234 (508)
T ss_pred cceEEEecCCCC----CcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHH
Confidence 345678999999 99999999999632 245566666655 6899999999999999999999833 3444444
Q ss_pred EEEeeccCCC---------------------------CCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCc-eeE--EE
Q 017735 91 VEIKRTIPKG---------------------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQE--HQ 140 (367)
Q Consensus 91 i~v~~~~~~~---------------------------~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~-v~~--v~ 140 (367)
|++.+++..+ ..........+|.+.+||++++.|||.+||..|-. |.. |.
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 5443221110 00012223678999999999999999999987753 333 66
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 141 i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
++.+ ..+++.|-|||+|.++|+|.+|..+.+++.+..+-|+|-.+.
T Consensus 315 mv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 315 MVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred EEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 7766 468999999999999999999999988888889999996544
No 90
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=2.6e-11 Score=84.20 Aligned_cols=56 Identities=25% Similarity=0.559 Sum_probs=51.1
Q ss_pred HHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 126 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 126 L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
|+++|++||+|++|.+..+. +++|||+|.+.++|++|++.||+..+.+++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998763 579999999999999999999999999999999985
No 91
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=3.5e-11 Score=87.52 Aligned_cols=68 Identities=21% Similarity=0.500 Sum_probs=59.8
Q ss_pred eEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 20 QKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 20 ~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
|+|.|||+ ++++++|+++|+.++.|..++++.++. ++++++|||+|.++++|++|++.. +.++++.|+
T Consensus 1 v~i~nlp~----~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPP----STTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTT----T--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCC----CCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 68999999 999999999999999999999999986 899999999999999999999944 477887764
No 92
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=4.2e-11 Score=107.17 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=69.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEee
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKR 95 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~ 95 (367)
.++|+|.||++ ++++++|+++|+.||+|++|.|+++.. +++||||+|+++++|+.||. +...|.++.|.|.+
T Consensus 4 ~rtVfVgNLs~----~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSL----KATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEe
Confidence 57899999999 999999999999999999999998864 56899999999999999998 55689999999998
Q ss_pred ccCCCC
Q 017735 96 TIPKGA 101 (367)
Q Consensus 96 ~~~~~~ 101 (367)
+.....
T Consensus 77 a~~~~~ 82 (260)
T PLN03120 77 AEDYQL 82 (260)
T ss_pred ccCCCC
Confidence 765443
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.8e-11 Score=102.67 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=88.5
Q ss_pred hhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCC
Q 017735 11 MFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IING 88 (367)
Q Consensus 11 ~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g 88 (367)
.+...+.+|++|..|.. ++++.-|...|-.||.|++|.+..|-.+.+.|+|+||+|+..|+|.+||.+++ ++.+
T Consensus 4 ~~~a~~KrtlYVGGlad----eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 4 QQMANQKRTLYVGGLAD----EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred ccccccceeEEeccchH----HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence 34556788999999999 99999999999999999999999999999999999999999999999999775 8899
Q ss_pred eEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhh
Q 017735 89 KQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF 130 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f 130 (367)
+.|+|..+.|........ -|-+.+++-|+++-
T Consensus 80 rtirVN~AkP~kikegsq----------kPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 80 RTIRVNLAKPEKIKEGSQ----------KPVWADDDWLKKQQ 111 (298)
T ss_pred eeEEEeecCCccccCCCC----------CCcccCcHHHHHhc
Confidence 999999998875443222 34455555555544
No 94
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=4.8e-12 Score=105.17 Aligned_cols=81 Identities=25% Similarity=0.504 Sum_probs=73.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~ 92 (367)
+++.-|||.+|++ +.||.+|..+|++||+|++|.|++|+.|++|+||||+.|++..+...|+.+++ .|.++.|+
T Consensus 33 kdsA~Iyiggl~~----~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 33 KDSAYIYIGGLPY----ELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred ccceEEEECCCcc----cccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 5677899999999 99999999999999999999999999999999999999999999999998665 78899999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|......
T Consensus 109 VDHv~~Y 115 (219)
T KOG0126|consen 109 VDHVSNY 115 (219)
T ss_pred eeecccc
Confidence 8765444
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=1.9e-11 Score=118.01 Aligned_cols=78 Identities=22% Similarity=0.504 Sum_probs=73.1
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEee
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKR 95 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 95 (367)
.+++|+++++ ++++++|.++|+..+.|.+++++.|+.|+++|||+|++|.++++++.|+++++ ++.+++|+|.+
T Consensus 19 ~~v~vgnip~----~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPY----EGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCC----cccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 8999999999 99999999999999999999999999999999999999999999999999665 89999999987
Q ss_pred ccCC
Q 017735 96 TIPK 99 (367)
Q Consensus 96 ~~~~ 99 (367)
+...
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 6543
No 96
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.15 E-value=4.3e-11 Score=110.83 Aligned_cols=86 Identities=40% Similarity=0.740 Sum_probs=79.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+.++|||+.|+|+++|+.|++.|++|++|.+|.|++|+.++++++|.||+|++++.+.++|.. ..+.|+++.|+++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999876 6778999999999999
Q ss_pred CCCCCCC
Q 017735 188 PKKPNLP 194 (367)
Q Consensus 188 ~~~~~~~ 194 (367)
++.....
T Consensus 84 ~r~~~~~ 90 (311)
T KOG4205|consen 84 SREDQTK 90 (311)
T ss_pred Ccccccc
Confidence 8875543
No 97
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=7.6e-11 Score=97.64 Aligned_cols=75 Identities=20% Similarity=0.431 Sum_probs=66.3
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
-.+.|+|.||.. .+++.||+.+|..||+|.+|+|.+.+ .|||||||+++.+|+.|+. +...|.+..|.|
T Consensus 9 ~~~kVYVGnL~~----~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 9 GNTKVYVGNLGS----RATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCceEEeccCCC----CcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 367899999999 99999999999999999999998865 4799999999999999998 445888988998
Q ss_pred eeccCC
Q 017735 94 KRTIPK 99 (367)
Q Consensus 94 ~~~~~~ 99 (367)
++..-.
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 887654
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.14 E-value=1.8e-09 Score=99.22 Aligned_cols=152 Identities=15% Similarity=0.231 Sum_probs=118.7
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 94 (367)
...++|..|... .++.+.|.++|..||.|+.|++|+.+. +.|.||+.|..+++.|++.++ .+.+.+|+|.
T Consensus 287 g~VmMVyGLdh~---k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 287 GCVMMVYGLDHG---KMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CcEEEEEecccc---ccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 346778888763 677889999999999999999998764 689999999999999999554 6678888887
Q ss_pred eccCCCCC---------------------------------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCC-ceeEEE
Q 017735 95 RTIPKGAV---------------------------------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQ 140 (367)
Q Consensus 95 ~~~~~~~~---------------------------------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~ 140 (367)
.+...... .....++++|..-|.|..+|||.|.++|.... ...+|+
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 65432111 01234678999999999999999999996543 345667
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 141 i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
|..-+ +.++ --+.+||++.++|.+||.+||...|.+
T Consensus 439 vFp~k-serS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 439 VFPLK-SERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eeccc-cccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 76654 3333 257999999999999999999998875
No 99
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.14 E-value=5.1e-10 Score=107.53 Aligned_cols=79 Identities=28% Similarity=0.577 Sum_probs=69.2
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
.+|||.|||.++++++|+++|.+||.|+...|.......+...|+||+|++.++++.||++ +...|++++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4699999999999999999999999999988877543445558999999999999999998 588899999999876554
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.13 E-value=2.4e-10 Score=100.75 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=67.5
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~ 94 (367)
.-.+++|.||++ ++++++|+++|+.||+|.+|+|+++. ++++||||+|+++++|+.|+. +...|.++.|.|.
T Consensus 4 ~g~TV~V~NLS~----~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSP----KATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCC----CCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEE
Confidence 457899999999 99999999999999999999999885 455799999999999999998 6678899999887
Q ss_pred eccC
Q 017735 95 RTIP 98 (367)
Q Consensus 95 ~~~~ 98 (367)
....
T Consensus 77 ~~~~ 80 (243)
T PLN03121 77 RWGQ 80 (243)
T ss_pred eCcc
Confidence 7553
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.13 E-value=1.5e-09 Score=100.85 Aligned_cols=163 Identities=20% Similarity=0.304 Sum_probs=119.4
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceE-EEEEeCCHHHHHHHHhhc---cccCCeE-EEE
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGF-GFVTYADPSVVDKVIEDT---HIINGKQ-VEI 93 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~-afV~f~~~~~a~~al~~~---~~i~g~~-i~v 93 (367)
.++|.++.. .++.|-|..+|++||.|.+|...... .+| |.|+|.+.+.|+.|...+ ++.++.+ |+|
T Consensus 152 r~iie~m~y----pVslDVLHqvFS~fG~VlKIiTF~Kn-----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 152 RTIIENMFY----PVSLDVLHQVFSKFGFVLKIITFTKN-----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred EEEecccee----eeEHHHHHHHHhhcceeEEEEEEecc-----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 456677777 89999999999999999877655432 233 889999999888876522 2333322 233
Q ss_pred e----------eccCCCC--------CC---------------------------------------CCCC--CcceEEE
Q 017735 94 K----------RTIPKGA--------VG---------------------------------------SKDF--KTKKIFV 114 (367)
Q Consensus 94 ~----------~~~~~~~--------~~---------------------------------------~~~~--~~~~l~V 114 (367)
. ....+.. .- .-.. .+..|-|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 2 1110000 00 0000 1467888
Q ss_pred eCCCCC-CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCCC
Q 017735 115 GGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 115 ~~lp~~-~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
.||... +|.+.|..+|.-||+|.+|+|+.++.+ -|+|.+.|...|+.|++.|+++.|.+++|+|.+++-..-..
T Consensus 303 snln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred ecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 998876 899999999999999999999988643 69999999999999999999999999999999988765544
Q ss_pred CC
Q 017735 194 PQ 195 (367)
Q Consensus 194 ~~ 195 (367)
+.
T Consensus 378 p~ 379 (492)
T KOG1190|consen 378 PR 379 (492)
T ss_pred CC
Confidence 43
No 102
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2.6e-10 Score=103.88 Aligned_cols=80 Identities=30% Similarity=0.616 Sum_probs=72.6
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh-cCCcccCCeee
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK-GNKLELAGAQV 181 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~-l~g~~~~g~~l 181 (367)
+.++...++|||++|-..++|++|+++|.+||+|+.|.++.. +++|||+|.+.++|+.|.++ ++.+.|++++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 446677889999999999999999999999999999999876 45999999999999999875 68888999999
Q ss_pred EeeecCC
Q 017735 182 EVKKAEP 188 (367)
Q Consensus 182 ~v~~a~~ 188 (367)
.|.|.++
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999988
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.08 E-value=1.5e-10 Score=106.78 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=133.3
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 94 (367)
..+.++.++.+ .+.+.++..++...+.+..+.+......-.+++++.|.|+..+.+..||... +.+....+...
T Consensus 88 ~~~~f~g~~s~----~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 88 SSTFFVGELSE----NIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccc----chhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 45677777776 6666677788888898888888877777789999999999999999999832 23344444333
Q ss_pred eccCCCCC------CCCCCCcceEE-EeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 017735 95 RTIPKGAV------GSKDFKTKKIF-VGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 167 (367)
Q Consensus 95 ~~~~~~~~------~~~~~~~~~l~-V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~A 167 (367)
........ ........++| |.+|+..+++++|+++|..++.|..|+++.++.++..++||+|+|.+...+..+
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 32222211 11222344555 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccCCeeeEeeecCCCCC
Q 017735 168 LAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 168 l~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
+.. +...+.++++.|+..+++..
T Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 244 LND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hhc-ccCcccCcccccccCCCCcc
Confidence 988 88889999999988776643
No 104
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.4e-10 Score=113.49 Aligned_cols=81 Identities=27% Similarity=0.537 Sum_probs=74.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
+.++||||+.|+..++|+||+++|+.||+|++|.++.. ++||||++....+|++||.+|+++.+..+.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45789999999999999999999999999999999876 679999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 017735 187 EPKKPNL 193 (367)
Q Consensus 187 ~~~~~~~ 193 (367)
..+-...
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9876544
No 105
>PLN03213 repressor of silencing 3; Provisional
Probab=99.08 E-value=1.6e-10 Score=109.37 Aligned_cols=77 Identities=13% Similarity=0.350 Sum_probs=67.4
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCH--HHHHHHHhhc--cccCCeE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADP--SVVDKVIEDT--HIINGKQ 90 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~--~~a~~al~~~--~~i~g~~ 90 (367)
....+|||.||++ ++++++|..+|..||.|.+|.|++. |+ ||||||+|.+. +++++||+.+ .++.|+.
T Consensus 8 ~~gMRIYVGNLSy----dVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 8 GGGVRLHVGGLGE----SVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred CcceEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 3457899999999 9999999999999999999999944 55 99999999987 6799999944 5899999
Q ss_pred EEEeeccCC
Q 017735 91 VEIKRTIPK 99 (367)
Q Consensus 91 i~v~~~~~~ 99 (367)
|+|..+.+.
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999887654
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2.8e-10 Score=90.18 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=72.3
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEeec
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRT 96 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~~ 96 (367)
.|||.++.. ++++++|.+.|..||+|+++.|-.|..|+-.||||+|+|++.++|++|++.+ .+|.+++|.|.|+
T Consensus 74 Ii~VtgvHe----EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHE----EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCc----chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 578888888 9999999999999999999999999999999999999999999999999954 4889999999998
Q ss_pred cCCCC
Q 017735 97 IPKGA 101 (367)
Q Consensus 97 ~~~~~ 101 (367)
..+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 66544
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.07 E-value=1.4e-10 Score=101.51 Aligned_cols=151 Identities=21% Similarity=0.352 Sum_probs=119.3
Q ss_pred HHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEeeccCCCC--CCCCCCCcceEEE
Q 017735 39 IKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA--VGSKDFKTKKIFV 114 (367)
Q Consensus 39 ~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~~~~~~~~--~~~~~~~~~~l~V 114 (367)
...|+.+-.+...+++++. .+.-+.++|+.|.......++.. +...+.-+.|++-..+.-.+ ....+....+||.
T Consensus 117 ~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfc 195 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFC 195 (290)
T ss_pred hhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeec
Confidence 4557777777777777775 35567899999988877777655 33344444455444333222 2335566789999
Q ss_pred eCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 115 GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 115 ~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
+.|..+++++.|...|.+|-.....++++|+.|+++++|.||.|.+++++..|+..|++..++.++|++....-++
T Consensus 196 gdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 196 GDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987665544
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=6.9e-10 Score=79.52 Aligned_cols=68 Identities=22% Similarity=0.548 Sum_probs=59.1
Q ss_pred eccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 22 MTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 22 v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
|.+|+. ++++++|+++|++||.|..+.+..++.+++++++|||+|.+.++|++|++.+ ..+.++.|.|
T Consensus 1 i~~l~~----~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPP----DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCc----ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 456666 8999999999999999999999998878899999999999999999999854 3566777665
No 109
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=9.1e-10 Score=79.23 Aligned_cols=69 Identities=26% Similarity=0.472 Sum_probs=60.2
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
+++|.+|+. .++.++|+++|++|++|..+.++.++ +.++++|||+|.+.++|++|++.+ ..+.++.|.|
T Consensus 1 ~v~i~~l~~----~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPP----DVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCC----cCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 588999988 89999999999999999999999876 678899999999999999999843 3567777665
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=2.2e-11 Score=122.11 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=127.9
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
++..++|+.||+. .+.+.+|...|..++.|..+.+.....+++.||.|+|+|.+++++.+||. +...+.+
T Consensus 665 R~~~~~fvsnl~~----~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSP----KMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----- 735 (881)
T ss_pred HHHHHHHHhhcch----hhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----
Confidence 3455889999999 99999999999999999988888777788999999999999999999988 2111222
Q ss_pred eeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
...|+|.++|...|.++|+.++.+++.+.++.++..+ .+++++.|+|.|.++.++.+++..++.
T Consensus 736 ---------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 ---------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred ---------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh
Confidence 4678999999999999999999999999999988774 789999999999999999999988888
Q ss_pred cccCCeeeEeeecCC
Q 017735 174 LELAGAQVEVKKAEP 188 (367)
Q Consensus 174 ~~~~g~~l~v~~a~~ 188 (367)
..+.-..+.|....+
T Consensus 800 ~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhcCccccccCC
Confidence 888777777766544
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.03 E-value=9.1e-10 Score=93.79 Aligned_cols=85 Identities=25% Similarity=0.444 Sum_probs=76.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccC-CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~-G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
......-++|..+|.-+.+.+|..+|.++ |.|..+++.+++.|+.+++||||+|++++.|+-|.+.||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34455678999999999999999999888 88889999899999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 017735 184 KKAEPK 189 (367)
Q Consensus 184 ~~a~~~ 189 (367)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 875554
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=9.7e-11 Score=100.24 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=114.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
...+||+|.||.. .++|+-|.|+|-+.|+|..|.|..++ +.+.| ||||+|+++.++.-|++-+ ..+.++.+.
T Consensus 7 e~drtl~v~n~~~----~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 7 EMDRTLLVQNMYS----GVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred chhhHHHHHhhhh----hhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 3567999999998 99999999999999999999998777 46667 9999999999999999843 344455444
Q ss_pred EeeccCCCCCCCCCCCcceEEEeC----CCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 93 IKRTIPKGAVGSKDFKTKKIFVGG----IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 93 v~~~~~~~~~~~~~~~~~~l~V~~----lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
++ ++.++ |...++++.+.+.|+..++++.+++.++. +++++-+.||++...-+.-.++
T Consensus 81 ~~-----------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 81 RT-----------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFAL 142 (267)
T ss_pred cc-----------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHh
Confidence 43 33344 56678999999999999999999999985 4888889999988777777777
Q ss_pred HhcCCcccCCeeeEe
Q 017735 169 AKGNKLELAGAQVEV 183 (367)
Q Consensus 169 ~~l~g~~~~g~~l~v 183 (367)
...+...+--+++.+
T Consensus 143 ~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 143 DLYQGLELFQKKVTI 157 (267)
T ss_pred hhhcccCcCCCCccc
Confidence 765555544444443
No 113
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.00 E-value=1.4e-09 Score=94.04 Aligned_cols=83 Identities=19% Similarity=0.440 Sum_probs=74.8
Q ss_pred CcceEEEeCCCCCCCHHHHHH----hhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 108 KTKKIFVGGIPSSVNEDEFKD----FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~----~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
+..||||.||++.+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.++|..|+.+|++..+-+++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999988 999999999998774 5678999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
.+|+.+....
T Consensus 85 qyA~s~sdii 94 (221)
T KOG4206|consen 85 QYAKSDSDII 94 (221)
T ss_pred ecccCccchh
Confidence 9998876543
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=7.2e-10 Score=97.55 Aligned_cols=99 Identities=22% Similarity=0.473 Sum_probs=81.4
Q ss_pred eEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 89 KQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
+.|.|+.+.+. ++..+.++|||+-|...-+|||++.+|..||.|++|.+.+.. ++.+||||||.|.+..+|..||
T Consensus 3 rpiqvkpadse----srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 3 RPIQVKPADSE----SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCccccccccc----cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHH
Confidence 44555544332 333467899999999999999999999999999999999884 7889999999999999999999
Q ss_pred HhcCCcc-cCC--eeeEeeecCCCCCC
Q 017735 169 AKGNKLE-LAG--AQVEVKKAEPKKPN 192 (367)
Q Consensus 169 ~~l~g~~-~~g--~~l~v~~a~~~~~~ 192 (367)
..||+.. +-+ ..|.|+++...+++
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHH
Confidence 9998765 333 66999998876654
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.95 E-value=2.4e-09 Score=98.72 Aligned_cols=167 Identities=14% Similarity=0.236 Sum_probs=118.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
+++..+....|+| ..+..+|..+|+-.-.+.--..+.....++-.+.+.|.|.++|.-+-|++ ..|.+..+.|+|
T Consensus 58 ~~~vvvRaRglpw----q~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryiev 133 (508)
T KOG1365|consen 58 DDNVVVRARGLPW----QSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEV 133 (508)
T ss_pred CcceEEEecCCCC----CcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceee
Confidence 3445667778888 66677777777755333333334444456778999999999999999998 556778889998
Q ss_pred eeccCCCCC--------CCC----CCCcceEEEeCCCCCCCHHHHHHhhccCC----ceeEEEEeeCCCCCCcccEEEEE
Q 017735 94 KRTIPKGAV--------GSK----DFKTKKIFVGGIPSSVNEDEFKDFFMQFG----DVQEHQIMRDHSTSRSRGFGFIT 157 (367)
Q Consensus 94 ~~~~~~~~~--------~~~----~~~~~~l~V~~lp~~~te~~L~~~f~~~G----~v~~v~i~~~~~~g~~~G~afV~ 157 (367)
..+...+-. ... ....-.|.+.+||+++++.|+.+||.+.- .++.|-+++ +.+++..|-|||.
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVL 212 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEE
Confidence 776544221 111 12234677899999999999999996432 334454444 4578999999999
Q ss_pred eCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 158 FDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 158 F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
|+.+++|+.||.+ |...|.-|-|++-.++
T Consensus 213 fa~ee~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 213 FACEEDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred ecCHHHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 9999999999988 6667777777775443
No 116
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=6.7e-09 Score=75.04 Aligned_cols=71 Identities=23% Similarity=0.497 Sum_probs=61.9
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEe
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIK 94 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 94 (367)
+++|.+|+. .+++++|+++|+.+++|..+.++.++.+ +++++|||+|.+.++|+.|++.++ .++++.+.|.
T Consensus 1 ~i~i~~l~~----~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPP----DVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCC----ccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 478999999 8999999999999999999999988765 778999999999999999999544 4677777664
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=3.9e-09 Score=76.79 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=48.5
Q ss_pred HHHHHHhhc----cCCCccEEE-EeeCCCC--CCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 35 LAQFIKHFG----KYGEITDSV-IMKDRKT--GQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 35 ~~~l~~~F~----~~G~i~~~~-i~~~~~t--g~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|.+.++|++|++.+ ..+.++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 456667777 999999996 7777666 889999999999999999999954 4777877764
No 118
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.90 E-value=3.7e-09 Score=101.82 Aligned_cols=81 Identities=22% Similarity=0.521 Sum_probs=76.2
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
.+.|||..|+..+-..||+.||++||+|+-++|+++..+.-.++|+||++.+.++|.+||+.||.++|.++.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 45799999999999999999999999999999999988888899999999999999999999999999999999988875
Q ss_pred C
Q 017735 189 K 189 (367)
Q Consensus 189 ~ 189 (367)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 3
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=1.3e-09 Score=110.17 Aligned_cols=165 Identities=16% Similarity=0.227 Sum_probs=130.1
Q ss_pred hhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCC
Q 017735 11 MFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IING 88 (367)
Q Consensus 11 ~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g 88 (367)
+-....++|||+.||.. .+++.+|+..|..+|.|.+|.|-+.+. ++-.-|+||.|.+.+.+..|+..+. .|..
T Consensus 366 ~DD~~atrTLf~Gnl~~----kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDS----KLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred ccchhhhhhhhhcCccc----chhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCcccc
Confidence 33445678999999999 999999999999999999988876543 3344589999999988887766332 2222
Q ss_pred eEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 89 KQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
-.+.+....+ ....++.|+|+.|..++....|..+|..||.|..|.+-.. .-||+|.|++...+++|+
T Consensus 441 g~~r~glG~~------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 441 GTHRIGLGQP------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAAT 508 (975)
T ss_pred Cccccccccc------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhH
Confidence 2333333222 4556789999999999999999999999999999888654 349999999999999999
Q ss_pred HhcCCcccCC--eeeEeeecCCCCCC
Q 017735 169 AKGNKLELAG--AQVEVKKAEPKKPN 192 (367)
Q Consensus 169 ~~l~g~~~~g--~~l~v~~a~~~~~~ 192 (367)
+.|.+..|.+ ++|.|.++.+....
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHHhcCcCCCCCcccccccccCCCCC
Confidence 9999999975 77999998876543
No 120
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.89 E-value=6.4e-09 Score=92.82 Aligned_cols=86 Identities=20% Similarity=0.425 Sum_probs=77.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
+....+|+|.|||..|+++||+++|++|+.++.+.|..++ ++++.+.|-|.|+..++|++|++++|++.++++++++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999998884 789999999999999999999999999999999999988
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
..+....
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 7766544
No 121
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=77.39 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=66.3
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
.++.+||.|||+ ++|.+++.++|.+||.|..|+|=.++. .+|.|||.|++..+|++|++++ ..+..+.+.|
T Consensus 17 vnriLyirNLp~----~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 17 VNRILYIRNLPF----KITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred hheeEEEecCCc----cccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 467899999999 999999999999999999999977554 6899999999999999999955 4677888887
Q ss_pred eeccCC
Q 017735 94 KRTIPK 99 (367)
Q Consensus 94 ~~~~~~ 99 (367)
-..++.
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 766554
No 122
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.79 E-value=2.3e-08 Score=69.25 Aligned_cols=54 Identities=33% Similarity=0.642 Sum_probs=46.1
Q ss_pred HHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEeec
Q 017735 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRT 96 (367)
Q Consensus 38 l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~~~ 96 (367)
|.++|++||+|+++.+..+. +++|||+|.+.++|++|++ +...+.+++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998765 4699999999999999999 445889999998764
No 123
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.77 E-value=3.8e-08 Score=90.66 Aligned_cols=86 Identities=26% Similarity=0.419 Sum_probs=79.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCcee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~--------~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
.....+|||-.||..+++++|.++|.+++.|+ .|+|-+|++|.++|+-|.|+|+++.+|++||+.++...|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999887 4788899999999999999999999999999999999999
Q ss_pred CeeeEeeecCCCCC
Q 017735 178 GAQVEVKKAEPKKP 191 (367)
Q Consensus 178 g~~l~v~~a~~~~~ 191 (367)
+.+|+|.+|+.+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999988775
No 124
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.77 E-value=5.5e-09 Score=97.72 Aligned_cols=94 Identities=13% Similarity=0.252 Sum_probs=73.8
Q ss_pred EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeC---CCCCC----------cccEEEEEe
Q 017735 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD---HSTSR----------SRGFGFITF 158 (367)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~---~~~g~----------~~G~afV~F 158 (367)
+|++..+......+..+.++|.+-|||.+-.-+.|.++|..+|.|+.|+|+.. +.+.+ .+-+|+|||
T Consensus 214 KVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEy 293 (484)
T KOG1855|consen 214 KVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEY 293 (484)
T ss_pred eeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhh
Confidence 45566666677777889999999999999999999999999999999999875 32221 145799999
Q ss_pred CCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 159 DTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 159 ~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
+..++|.+|.+.|+.....-..|+|++
T Consensus 294 e~~~~A~KA~e~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 294 EEVEAARKARELLNPEQNWRMGLKVKL 320 (484)
T ss_pred hhhHHHHHHHHhhchhhhhhhcchhhh
Confidence 999999999999865544444444443
No 125
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=1.7e-08 Score=90.28 Aligned_cols=85 Identities=18% Similarity=0.386 Sum_probs=79.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.+.+||+|+...++.++|+.+|+.|+.|..|.|+.|+..+++++||||+|.+.+.+++|++ ||...|.++.++|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456778999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eecCCC
Q 017735 184 KKAEPK 189 (367)
Q Consensus 184 ~~a~~~ 189 (367)
.+.+-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987765
No 126
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.75 E-value=3.7e-08 Score=89.97 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCcee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~--------~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
...++.|||.+||.++|.+++.++|++||.|. .|+|.++. .++.+|=|+|.|-..++++.|++.|+...|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 33456699999999999999999999999887 47888885 5999999999999999999999999999999
Q ss_pred CeeeEeeecCC
Q 017735 178 GAQVEVKKAEP 188 (367)
Q Consensus 178 g~~l~v~~a~~ 188 (367)
++.|+|+.|+-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998774
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.2e-09 Score=94.67 Aligned_cols=81 Identities=14% Similarity=0.315 Sum_probs=71.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
.+.+.+||-.|.+ -++.++|.-+|+.||.|.+|.|++|.+|+.+.-||||+|++.+++++|.-++ ..|+.+.|.
T Consensus 237 PPeNVLFVCKLNP----VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 237 PPENVLFVCKLNP----VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred CCcceEEEEecCC----cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 3567899999998 8889999999999999999999999999999999999999999999998744 378899999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|..+++.
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 8776543
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.72 E-value=9.4e-08 Score=82.36 Aligned_cols=86 Identities=17% Similarity=0.329 Sum_probs=71.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEee-CCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC---CeeeE
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR-DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---GAQVE 182 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~-~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~---g~~l~ 182 (367)
...+||||.+||.++..-||..+|..|---+...|.. ++.....+-+|||+|.+..+|.+|+.+||++.|+ ..+|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4579999999999999999999999987666665543 3333344579999999999999999999999997 57899
Q ss_pred eeecCCCCCC
Q 017735 183 VKKAEPKKPN 192 (367)
Q Consensus 183 v~~a~~~~~~ 192 (367)
|++|+.....
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9998866543
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.71 E-value=2.4e-08 Score=98.37 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=119.8
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc-ccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~-~i~g~~i~v~ 94 (367)
+...+.+..+++ .+++.+++++|... .|..+.|.++.......|-++|+|...+++++|+++.. ++-.+.+++.
T Consensus 310 d~~y~~~~gm~f----n~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 310 DKYYNNYKGMEF----NNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTG 384 (944)
T ss_pred hhheeeeccccc----ccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeec
Confidence 344566777777 88999999998764 45566666665444457899999999999999999433 3344555553
Q ss_pred eccCCCC-----------------------------------CCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeE-
Q 017735 95 RTIPKGA-----------------------------------VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE- 138 (367)
Q Consensus 95 ~~~~~~~-----------------------------------~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~- 138 (367)
......+ ..........|||..||..+++.++.++|...-.|++
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 2111100 0011223568999999999999999999999888888
Q ss_pred EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 139 v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
|.|..- .+.+.+..|||+|..++++.+|+.--+++.+.-+.|+|...
T Consensus 465 I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 465 IELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 555544 57788999999999988888887766778888888988543
No 130
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=7.1e-09 Score=88.94 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
...+||||.|+...++|+.|.|+|-+.|+|.+|.|..++ +++.+ ||||+|+++.++.-|++.+|+..+.++.|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 346899999999999999999999999999999999885 45556 9999999999999999999999999998888764
Q ss_pred C
Q 017735 187 E 187 (367)
Q Consensus 187 ~ 187 (367)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=1.4e-07 Score=72.40 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=69.4
Q ss_pred ceEEEeCCCCCCCHHHHHHhhcc--CCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC----CeeeEe
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQ--FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA----GAQVEV 183 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~--~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~----g~~l~v 183 (367)
+||.|.|||...|+++|.+++.+ .+...-+-++.|..+..+.|||||.|.++++|.+..+.+++..+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998854 356777888999889999999999999999999999999988875 577888
Q ss_pred eecCCC
Q 017735 184 KKAEPK 189 (367)
Q Consensus 184 ~~a~~~ 189 (367)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887643
No 132
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.65 E-value=2.9e-08 Score=99.01 Aligned_cols=111 Identities=19% Similarity=0.304 Sum_probs=87.2
Q ss_pred hhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCC
Q 017735 11 MFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIING 88 (367)
Q Consensus 11 ~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g 88 (367)
..++-.++||||..|+. .+++.+|.++|+.||+|.+|.|+.. +++|||++...++|++||.++ +.+..
T Consensus 415 d~isV~SrTLwvG~i~k----~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPK----NVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred cceeEeeeeeeeccccc----hhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccc
Confidence 34445678999999998 9999999999999999999999864 469999999999999999944 57889
Q ss_pred eEEEEeeccCCCCCCC-CCCCcceEEEeCCCCCCCHHHHHHhhc
Q 017735 89 KQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFM 131 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~~-~~~~~~~l~V~~lp~~~te~~L~~~f~ 131 (367)
+.|+|.|+..+..... .+.-...|=|.-|||..-.++|+.+++
T Consensus 485 k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 485 KTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 9999999987765542 222333455677888755555776664
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=8e-08 Score=87.89 Aligned_cols=75 Identities=29% Similarity=0.441 Sum_probs=66.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh---hccccCCeE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE---DTHIINGKQ 90 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~---~~~~i~g~~ 90 (367)
.+..++++|.+|.. +++|.+|+++|.+||+|..++++..+. +|||+|.+.++|+.|.+ +...|+++.
T Consensus 225 D~~I~tLyIg~l~d----~v~e~dIrdhFyqyGeirsi~~~~~~~------CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 225 DTSIKTLYIGGLND----EVLEQDIRDHFYQYGEIRSIRILPRKG------CAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred ccceeEEEeccccc----chhHHHHHHHHhhcCCeeeEEeecccc------cceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34456899999988 999999999999999999999997664 99999999999999988 334889999
Q ss_pred EEEeeccC
Q 017735 91 VEIKRTIP 98 (367)
Q Consensus 91 i~v~~~~~ 98 (367)
|.|+|..+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999887
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=7.2e-08 Score=84.29 Aligned_cols=72 Identities=26% Similarity=0.631 Sum_probs=66.1
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
..|||++||+.+.+.+|.+||..|+.|.+|.+.. +|+||+|+++.+|+.|+..||..+|.+..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999999998764 48999999999999999999999999988999888754
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=7.8e-08 Score=93.06 Aligned_cols=78 Identities=24% Similarity=0.434 Sum_probs=68.9
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCe
Q 017735 100 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 179 (367)
Q Consensus 100 ~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~ 179 (367)
+.+...+....+|+|-|||.+|++++|.++|+.||+|+.|+..+ ..++.+||+|-|..+|+.|+++|+..+|.++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 33445577889999999999999999999999999999966443 4578999999999999999999999999998
Q ss_pred eeE
Q 017735 180 QVE 182 (367)
Q Consensus 180 ~l~ 182 (367)
.|.
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 888
No 136
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.50 E-value=3.1e-07 Score=78.54 Aligned_cols=77 Identities=16% Similarity=0.349 Sum_probs=63.1
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccC-CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEee
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKY-GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKR 95 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~-G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 95 (367)
.+++..++. -+.+.+++.+|.++ +.|..+++.+++.|+.||+||||+|++++.|+-|.+.|+ .+.++.|.+..
T Consensus 51 ~~~~~~~p~----g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 51 VVYVDHIPH----GFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred ceeeccccc----chhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 566666776 78888999999999 678888888999999999999999999999999998554 56677777665
Q ss_pred ccCC
Q 017735 96 TIPK 99 (367)
Q Consensus 96 ~~~~ 99 (367)
..|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 5433
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.50 E-value=2.5e-07 Score=89.39 Aligned_cols=77 Identities=22% Similarity=0.459 Sum_probs=69.3
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 94 (367)
.+++||..|+. .+-..+|+++|++||.|+-.+|+++..+--.+.|+||++.+.++|.+||+++| +|+++.|.|.
T Consensus 405 gRNlWVSGLSs----tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSS----TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccceeeecccc----chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 45899999997 77788999999999999999999998777789999999999999999999776 8999999997
Q ss_pred ecc
Q 017735 95 RTI 97 (367)
Q Consensus 95 ~~~ 97 (367)
.+.
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 654
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.33 E-value=9.2e-08 Score=89.41 Aligned_cols=156 Identities=21% Similarity=0.343 Sum_probs=121.6
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCc-cEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc---ccCCeEEEE
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEI-TDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH---IINGKQVEI 93 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i-~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~---~i~g~~i~v 93 (367)
+.+++.||.. .++.++|.++|...-.- ..-.|++ .+|+||.+.+...|.+|++.+. ++.++.+++
T Consensus 2 nklyignL~p----~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSP----QVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEV 70 (584)
T ss_pred CcccccccCC----CCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeec
Confidence 4688999999 89999999999875221 1222222 2599999999999999999443 788999998
Q ss_pred eeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEee-CCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR-DHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~-~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
....++.. .++++-|.|+|....|+.|..+..+|+.|+.|..+. +.++ -..-|+|.+.+.++.||++|+
T Consensus 71 ~~sv~kkq------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 71 EHSVPKKQ------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred cchhhHHH------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhc
Confidence 87776643 345688999999999999999999999999887643 3222 234578889999999999999
Q ss_pred CcccCCeeeEeeecCCCCCCCC
Q 017735 173 KLELAGAQVEVKKAEPKKPNLP 194 (367)
Q Consensus 173 g~~~~g~~l~v~~a~~~~~~~~ 194 (367)
+..|....++|.+-........
T Consensus 141 g~Q~en~~~k~~YiPdeq~~q~ 162 (584)
T KOG2193|consen 141 GPQLENQHLKVGYIPDEQNAQH 162 (584)
T ss_pred chHhhhhhhhcccCchhhhhcc
Confidence 9999999999988665554443
No 139
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.32 E-value=5.7e-07 Score=82.26 Aligned_cols=80 Identities=11% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCC--ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G--~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
.-+.-++||+||-|++|++||.+.+...| .+.++++..++.++++||||+|...+..++++.++.|-..+|.++.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34456899999999999999998887655 6778889999999999999999999999999999999999999987666
Q ss_pred ee
Q 017735 184 KK 185 (367)
Q Consensus 184 ~~ 185 (367)
..
T Consensus 157 ~~ 158 (498)
T KOG4849|consen 157 LS 158 (498)
T ss_pred ec
Confidence 43
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.27 E-value=1.7e-06 Score=83.55 Aligned_cols=79 Identities=22% Similarity=0.396 Sum_probs=66.4
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEee
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKR 95 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~ 95 (367)
-.+|||.|||. ++++++|+++|.+||+|++..|.......+...|+||+|++.++++.||+ +...|.+++|.|+.
T Consensus 288 ~~~i~V~nlP~----da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPP----DATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCC----CCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 34699999999 99999999999999999998887755334444899999999999999998 55678899998886
Q ss_pred ccCC
Q 017735 96 TIPK 99 (367)
Q Consensus 96 ~~~~ 99 (367)
..+.
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 6543
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.24 E-value=5.5e-07 Score=83.59 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=106.5
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCC---CcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTG---QPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg---~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
..|.|.||.+ .++.+++..+|.-+|.|.++.|+.+..+- ...-.|||.|.+.+.+..|.. ....+-++.|.|
T Consensus 8 ~vIqvanisp----sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISP----SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCc----hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEE
Confidence 3788999999 99999999999999999999999855332 345589999999998887765 222333444433
Q ss_pred eecc----CCC-------------------------CC------------CCCC-----------CCcceEEEeCCCCCC
Q 017735 94 KRTI----PKG-------------------------AV------------GSKD-----------FKTKKIFVGGIPSSV 121 (367)
Q Consensus 94 ~~~~----~~~-------------------------~~------------~~~~-----------~~~~~l~V~~lp~~~ 121 (367)
.... |.. .+ ..+. .-..+|+|.+|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 2110 000 00 0000 012479999999999
Q ss_pred CHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 122 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 122 te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
...++.++|+.+|.|....+.... ..-+|.|+|....+...|+.. ++.++.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 999999999999999887765432 233677999998888888876 455544
No 142
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=1.2e-07 Score=95.90 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=108.2
Q ss_pred HHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEeeccCCCCCCCCC------CCc
Q 017735 37 QFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD------FKT 109 (367)
Q Consensus 37 ~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~~~~~~~~~~~~------~~~ 109 (367)
.++..|..++.|+.|++......-...-+.++++....+++.|.. ....+..+.+.|-.+.+........ ...
T Consensus 588 ~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~ 667 (881)
T KOG0128|consen 588 IQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDL 667 (881)
T ss_pred hhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHHHHH
Confidence 568889999999999987632222222378899999999988877 3344666666665554443222211 234
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
.++||+||+..+.+++|...|..++.|+.|+|......++.+|+|+|+|.+++++.+||...+.+.+.-..|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v 739 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISV 739 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhh
Confidence 589999999999999999999999999988888666788999999999999999999998766555543333
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.20 E-value=3.7e-06 Score=83.56 Aligned_cols=84 Identities=21% Similarity=0.371 Sum_probs=74.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~---~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
++.++.|||.||+..++|+.|...|..||+|..|+|+-.+. ..+.+-|+||.|.+..+|++|++.|++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 56788999999999999999999999999999999986543 234566899999999999999999999999999999
Q ss_pred eeecCCC
Q 017735 183 VKKAEPK 189 (367)
Q Consensus 183 v~~a~~~ 189 (367)
+-|.+..
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998644
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.17 E-value=6.1e-06 Score=73.88 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=70.3
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
+.-+.+|.|.||+. .++.++|+++|++|++++.+.|-.++ ++++.|.|-|.|...++|++|++.. ..++++.+
T Consensus 80 ~~~~~~v~v~NL~~----~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPY----GVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred CCCcceeeeecCCc----CcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 34457899999999 99999999999999988888888887 6999999999999999999999944 47889998
Q ss_pred EEeeccCCC
Q 017735 92 EIKRTIPKG 100 (367)
Q Consensus 92 ~v~~~~~~~ 100 (367)
++....+..
T Consensus 155 k~~~i~~~~ 163 (243)
T KOG0533|consen 155 KIEIISSPS 163 (243)
T ss_pred eeEEecCcc
Confidence 887765543
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.16 E-value=3.8e-06 Score=65.91 Aligned_cols=71 Identities=25% Similarity=0.449 Sum_probs=44.4
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC-----CcccCCeeeEee
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN-----KLELAGAQVEVK 184 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~-----g~~~~g~~l~v~ 184 (367)
..|+|.+++..++.++|+++|++|++|..|.+..... .|+|.|.++++|++|++++. ...|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999987532 79999999999999998763 345666666665
Q ss_pred ec
Q 017735 185 KA 186 (367)
Q Consensus 185 ~a 186 (367)
..
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=4.5e-06 Score=81.14 Aligned_cols=157 Identities=14% Similarity=0.186 Sum_probs=103.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~ 92 (367)
.++.+|+|.||+. ++++++|+.+|+.||+|.+|+..+ ..++.+||+|-|..+|++|++.++ ++.++.|+
T Consensus 73 ~~~~~L~v~nl~~----~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPR----SVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCC----cCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567999999999 999999999999999999965543 356899999999999999999553 67777766
Q ss_pred EeeccCCCCC------------------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEE
Q 017735 93 IKRTIPKGAV------------------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG 154 (367)
Q Consensus 93 v~~~~~~~~~------------------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~a 154 (367)
.......... .......-.+|+- |+...+...++..++-++.++. +.. ...+-.-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~-----~~~~hq~ 216 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RET-----PLLNHQR 216 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccc-----cchhhhh
Confidence 2111110000 0001112234333 8888777666666777776665 222 1112246
Q ss_pred EEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 155 FITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 155 fV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
|++|.+..++..++..+ +..+.+....+.+..+
T Consensus 217 ~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 217 FVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 78888888886666543 6666666666655554
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.08 E-value=6e-06 Score=73.97 Aligned_cols=82 Identities=21% Similarity=0.381 Sum_probs=71.6
Q ss_pred hccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeE
Q 017735 12 FINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQ 90 (367)
Q Consensus 12 ~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~ 90 (367)
..+.+...++|.|+.+ .++.+++..+|+.|+.|..+.|..++.++.+|+|+||+|.+.+.++++++ +...|.++.
T Consensus 96 ~~~~d~~sv~v~nvd~----~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~ 171 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDF----LVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPA 171 (231)
T ss_pred hhccCCceEEEecccc----ccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccc
Confidence 3345678899999999 88888899999999999999999999888899999999999999999999 666788888
Q ss_pred EEEeecc
Q 017735 91 VEIKRTI 97 (367)
Q Consensus 91 i~v~~~~ 97 (367)
+.|.+..
T Consensus 172 i~vt~~r 178 (231)
T KOG4209|consen 172 IEVTLKR 178 (231)
T ss_pred ceeeeee
Confidence 8776543
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=1.4e-05 Score=58.67 Aligned_cols=71 Identities=11% Similarity=0.286 Sum_probs=48.1
Q ss_pred ceEEEeCCCCCCCHHH----HHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 110 KKIFVGGIPSSVNEDE----FKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~----L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
..|+|.|||.+.+... |+.+++.|| +|..|. .+.|+|.|.+.+.|++|.+.|++.++-+..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 456777775 565552 2479999999999999999999999999999999
Q ss_pred ecCCCC
Q 017735 185 KAEPKK 190 (367)
Q Consensus 185 ~a~~~~ 190 (367)
+.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 875443
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.87 E-value=1.2e-05 Score=74.48 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=70.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCcc--------EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hc
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEIT--------DSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DT 83 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~ 83 (367)
.....+|+|-.|+. .+++++|.++|.+|+.|+ .|+|.++++|.++|+-|.|+|+++..|++||. +.
T Consensus 63 ~s~~~ti~v~g~~d----~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 63 KSDNETIFVWGCPD----SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ccccccceeeccCc----cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 45677899999998 999999999999998764 47888899999999999999999999999998 44
Q ss_pred cccCCeEEEEeeccCCC
Q 017735 84 HIINGKQVEIKRTIPKG 100 (367)
Q Consensus 84 ~~i~g~~i~v~~~~~~~ 100 (367)
..+.+..|+|..+...+
T Consensus 139 kdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 139 KDFCGNTIKVSLAERRT 155 (351)
T ss_pred ccccCCCchhhhhhhcc
Confidence 57888888877765554
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.78 E-value=0.00012 Score=56.19 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=48.4
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccC--CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKY--GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~--G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
+||+|.|+|- ..+.++|.+++.+. +...-+-|..|..+..+.|||||.|.++++|.+..+.
T Consensus 2 TTvMirNIPn----~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPN----KYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCC----CCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 6899999999 55555555554432 4566678888888899999999999999999998874
No 151
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.70 E-value=3.3e-05 Score=68.21 Aligned_cols=74 Identities=18% Similarity=0.487 Sum_probs=62.1
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEeec
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRT 96 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~~ 96 (367)
.||-..|.- +++.+.|...|.+|-.....++++|+.|+++++|.||.|.+++++..|++++ +.+..+.|.++.+
T Consensus 192 RIfcgdlgN----evnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 192 RIFCGDLGN----EVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred eeecccccc----cccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 455555544 8999999999999999999999999999999999999999999999999954 4667777666544
No 152
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.65 E-value=5.3e-05 Score=69.56 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=10.0
Q ss_pred HHhcCCcccCCeeeEeeecC
Q 017735 168 LAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 168 l~~l~g~~~~g~~l~v~~a~ 187 (367)
..++|.+.|...+-+--.+.
T Consensus 291 aski~k~~igrvPDRGGR~n 310 (465)
T KOG3973|consen 291 ASKIHKLSIGRVPDRGGRTN 310 (465)
T ss_pred hhhhcccccccCCCCCCCcc
Confidence 33556666665554433333
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.64 E-value=0.00017 Score=66.18 Aligned_cols=84 Identities=19% Similarity=0.404 Sum_probs=66.1
Q ss_pred CCCCcceEEEeCCCCCCCHHH----H--HHhhccCCceeEEEEeeCCCCC-CcccE--EEEEeCCHHHHHHHHHhcCCcc
Q 017735 105 KDFKTKKIFVGGIPSSVNEDE----F--KDFFMQFGDVQEHQIMRDHSTS-RSRGF--GFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~----L--~~~f~~~G~v~~v~i~~~~~~g-~~~G~--afV~F~~~~~a~~Al~~l~g~~ 175 (367)
+.++.+-+||-.||..+..|+ | .++|.+||+|.+|.|.+...+- .-... .+|+|.+.|+|..||.++++..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 445667899999999987766 3 4889999999999887643211 11222 3999999999999999999999
Q ss_pred cCCeeeEeeecCC
Q 017735 176 LAGAQVEVKKAEP 188 (367)
Q Consensus 176 ~~g~~l~v~~a~~ 188 (367)
++++.|+..+-..
T Consensus 190 ~DGr~lkatYGTT 202 (480)
T COG5175 190 LDGRVLKATYGTT 202 (480)
T ss_pred ccCceEeeecCch
Confidence 9999999976553
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00013 Score=49.67 Aligned_cols=52 Identities=17% Similarity=0.489 Sum_probs=41.8
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
+.|-|.+.+.+..+..| ++|.+||+|..+.+... .-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56788888877775555 48889999999988733 238999999999999985
No 155
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.58 E-value=0.0002 Score=71.39 Aligned_cols=75 Identities=12% Similarity=0.258 Sum_probs=65.4
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~-v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
+.|-|.|+|++++-+||.+||..|-.+.. |.|..+ +.++..|-|.|.|++.++|.+|.+.|++..|..++|.|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 37899999999999999999999966554 444444 6799999999999999999999999999999999998864
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.44 E-value=0.00032 Score=47.76 Aligned_cols=52 Identities=19% Similarity=0.434 Sum_probs=41.2
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHH
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI 80 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al 80 (367)
+.|.|...+. ...++++++|.+||+|+++.+..... +.+|+|++..+|++||
T Consensus 2 ~wI~V~Gf~~-----~~~~~vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPP-----DLAEEVLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECc-----hHHHHHHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 4566777765 34466778999999999988874333 8999999999999986
No 157
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.00025 Score=69.05 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=56.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhc--cCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CcccCCeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFM--QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQV 181 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~--~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~--g~~~~g~~l 181 (367)
..+.+.|.|..||+.+-+|++|.||+ .|-++.+|++..+. -=||+|++.++|+.|.+.|. -.+|.+++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 34567888999999999999999994 58888899887763 35999999999999987653 345666665
Q ss_pred Ee
Q 017735 182 EV 183 (367)
Q Consensus 182 ~v 183 (367)
..
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 44
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00051 Score=67.11 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=64.0
Q ss_pred CCcceEEEeCCCCCCC------HHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC-Ce
Q 017735 107 FKTKKIFVGGIPSSVN------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GA 179 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~t------e~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~-g~ 179 (367)
.-...|+|.++|-.-. ..-|.++|+++|+|..+.++.+..++ .+||.|++|++..+|+.|++.||++.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4457788899886532 23456889999999999999886554 9999999999999999999999999987 57
Q ss_pred eeEeee
Q 017735 180 QVEVKK 185 (367)
Q Consensus 180 ~l~v~~ 185 (367)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777754
No 159
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.40 E-value=0.00038 Score=69.72 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=63.1
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCC---CCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEE
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRK---TGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQV 91 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~---tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i 91 (367)
++.++|.||++ .++++.|...|..||+|..++||.-.. ..+.+-++||.|.+..+|++|++.++ .|....+
T Consensus 174 TTNlyv~Nlnp----sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 174 TTNLYVGNLNP----SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred ccceeeecCCc----cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45799999999 999999999999999999999997652 23566799999999999999999664 5566666
Q ss_pred EEeec
Q 017735 92 EIKRT 96 (367)
Q Consensus 92 ~v~~~ 96 (367)
++-|.
T Consensus 250 K~gWg 254 (877)
T KOG0151|consen 250 KLGWG 254 (877)
T ss_pred eeccc
Confidence 66555
No 160
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.30 E-value=9.1e-05 Score=65.69 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=53.0
Q ss_pred HHHHHhhc-cCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 124 DEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 124 ~~L~~~f~-~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
+||...|+ +|++|+.+.|..+. ....+|-++|.|..+|+|++|++.||+..+.+++|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444444 89999999887763 456788999999999999999999999999999999987653
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.30 E-value=0.00034 Score=54.87 Aligned_cols=58 Identities=19% Similarity=0.375 Sum_probs=37.4
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcccc
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHII 86 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i 86 (367)
.|.|.++.. +++.++|+++|++|++|..|.+.+... .|+|.|.++++|++|++.....
T Consensus 3 il~~~g~~~----~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGE----PTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--S----S--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCC----CcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 466777776 888999999999999999998887654 7999999999999999855433
No 162
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.22 E-value=0.0013 Score=48.50 Aligned_cols=70 Identities=6% Similarity=0.143 Sum_probs=46.6
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEe
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 94 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 94 (367)
+.++|.|||...........|+.++..|| .|.+| . .+.|+|.|.+++.|+.|++.+ .++.+.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 56899999996666666677888888886 45444 1 137999999999999999944 47889999888
Q ss_pred ecc
Q 017735 95 RTI 97 (367)
Q Consensus 95 ~~~ 97 (367)
...
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 763
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.18 E-value=0.00028 Score=65.39 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=69.3
Q ss_pred ccceE-eccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEe
Q 017735 17 TTTQK-MTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~-v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~ 94 (367)
..+++ |.+|++ .+++++|+++|..++.|+.+++..++.++.+++|++|+|.+...+..++. ..+.+.++.+.+.
T Consensus 184 s~~~~~~~~~~f----~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 184 SDTIFFVGELDF----SLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLE 259 (285)
T ss_pred cccceeeccccc----ccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccc
Confidence 34455 899999 99999999999999999999999999999999999999999999999988 5567888888877
Q ss_pred eccCCC
Q 017735 95 RTIPKG 100 (367)
Q Consensus 95 ~~~~~~ 100 (367)
...+..
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 665553
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.001 Score=59.07 Aligned_cols=101 Identities=12% Similarity=0.293 Sum_probs=76.5
Q ss_pred HHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCccc
Q 017735 73 PSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRG 152 (367)
Q Consensus 73 ~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G 152 (367)
.+.|+.+|.. ....++.++|..+.. ..|||.||+.-++-+.|.+.|+.|++|+...++.| ...+..+
T Consensus 7 ae~ak~eLd~-~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~ 73 (275)
T KOG0115|consen 7 AEIAKRELDG-RFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTR 73 (275)
T ss_pred HHHHHHhcCC-CCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccc
Confidence 3445555542 346788888887742 68999999999999999999999999998877777 4577788
Q ss_pred EEEEEeCCHHHHHHHHHhcCCc----ccCCeeeEeeec
Q 017735 153 FGFITFDTEQAVDDLLAKGNKL----ELAGAQVEVKKA 186 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~l~g~----~~~g~~l~v~~a 186 (367)
-.+|+|...-.+.+|+..++.- ++..+++-|...
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 8999999999999998876432 233455555443
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.0011 Score=59.96 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=53.7
Q ss_pred HHHHHHhhccCCceeEEEEeeCCCCCCc-ccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 123 EDEFKDFFMQFGDVQEHQIMRDHSTSRS-RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 123 e~~L~~~f~~~G~v~~v~i~~~~~~g~~-~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
++++++.+++||+|..|.|..++..... .--.||+|+..++|.+|+-.||+..|.++.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4678899999999999988876543322 2247999999999999999999999999999887644
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.15 E-value=0.0017 Score=50.29 Aligned_cols=77 Identities=26% Similarity=0.374 Sum_probs=51.2
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEe-eC------CCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCe-e
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM-RD------HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-Q 180 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~-~~------~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~-~ 180 (367)
...|.|-+.|.. ....|.++|++||.|.+..-+ .+ ........+..|+|+++.+|++||.+ |+..|.+. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456888888888 557788999999999877511 00 00111244899999999999999988 99999875 4
Q ss_pred eEeeecC
Q 017735 181 VEVKKAE 187 (367)
Q Consensus 181 l~v~~a~ 187 (367)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566653
No 167
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.0027 Score=44.38 Aligned_cols=56 Identities=14% Similarity=0.337 Sum_probs=45.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccC---CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQF---GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~---G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
...+|+|.++ .+++.+||+.+|..| .....|+.+.|. -|-|.|.+++.|.+||.+|
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4568999998 458889999999887 245678888774 5899999999999999865
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.06 E-value=0.00033 Score=62.09 Aligned_cols=73 Identities=15% Similarity=0.366 Sum_probs=61.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCC--------CCcccE----EEEEeCCHHHHHHHHHhcCCcc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST--------SRSRGF----GFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~--------g~~~G~----afV~F~~~~~a~~Al~~l~g~~ 175 (367)
.+-.||+++||..+....|+++|++||.|-+|.|.+...+ +.+... +.|||.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999999876544 222222 5799999999999999999999
Q ss_pred cCCee
Q 017735 176 LAGAQ 180 (367)
Q Consensus 176 ~~g~~ 180 (367)
|.++.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 169
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0018 Score=62.85 Aligned_cols=64 Identities=30% Similarity=0.598 Sum_probs=48.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEee--CCCCCCccc---EEEEEeCCHHHHHHHHHhc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR--DHSTSRSRG---FGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~--~~~~g~~~G---~afV~F~~~~~a~~Al~~l 171 (367)
-.++|||+.||++++|++|...|..||.|..-+-.+ .+.---++| |+|+.|+++.++++-|.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 357999999999999999999999999875422211 111223567 9999999999988877653
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.99 E-value=0.00056 Score=64.81 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=53.3
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeC---CCCCC----------cceEEEEEeCCHHHHHHHHhh
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKD---RKTGQ----------PRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~---~~tg~----------srG~afV~f~~~~~a~~al~~ 82 (367)
+.++|.+.||+. +-..+.|.++|..+|.|+.|+|+.- +.+.+ .+-+|+|+|+..+.|.+|.+.
T Consensus 230 ~srtivaenLP~----Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 230 PSRTIVAENLPL----DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccceEEEecCCc----chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 567899999998 7788999999999999999999976 33221 255799999999999999985
Q ss_pred c
Q 017735 83 T 83 (367)
Q Consensus 83 ~ 83 (367)
+
T Consensus 306 ~ 306 (484)
T KOG1855|consen 306 L 306 (484)
T ss_pred h
Confidence 4
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.90 E-value=0.00066 Score=62.60 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=59.1
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCC--CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYG--EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G--~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
..+|.||.| .+|.++|.+.+...| .+.++++..++.++.|||||+|...+..++++.++-+ .+|+++.-.|
T Consensus 82 ~~YvGNL~W----~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 82 CCYVGNLLW----YTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEecceeE----EeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 688999999 999999999988776 5788999999989999999999999999999988833 3555554433
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.88 E-value=0.0053 Score=50.47 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=51.9
Q ss_pred CCCcceEEEeCCCC------CCCH---HHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 106 DFKTKKIFVGGIPS------SVNE---DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 106 ~~~~~~l~V~~lp~------~~te---~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
-++..||.|.-+.+ ...+ ++|.+.|.+||+|.-|+++.+ .-+|+|.+.++|.+|+.+ ++..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHG-CCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHcc-CCcEE
Confidence 34556666665551 1222 256777889999998888865 469999999999999976 99999
Q ss_pred CCeeeEeeecCCCC
Q 017735 177 AGAQVEVKKAEPKK 190 (367)
Q Consensus 177 ~g~~l~v~~a~~~~ 190 (367)
.++.|+|++..+..
T Consensus 95 ~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 95 NGRTLKIRLKTPDW 108 (146)
T ss_dssp TTEEEEEEE-----
T ss_pred CCEEEEEEeCCccH
Confidence 99999998866543
No 173
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.82 E-value=0.0068 Score=49.24 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCCCcceEEEeCCCCCCC-HHHHHHh---hccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee
Q 017735 105 KDFKTKKIFVGGIPSSVN-EDEFKDF---FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 180 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~t-e~~L~~~---f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~ 180 (367)
.+++..||.|.=|..++. .+||+.+ ++.||+|++|.++-. --|.|+|.|..+|-+|+.+++. ...+..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 466778999988877753 3455544 578999999987643 2699999999999999999876 566777
Q ss_pred eEeeecC
Q 017735 181 VEVKKAE 187 (367)
Q Consensus 181 l~v~~a~ 187 (367)
+.+.|..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8887754
No 174
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.72 E-value=0.0037 Score=47.02 Aligned_cols=66 Identities=18% Similarity=0.384 Sum_probs=47.3
Q ss_pred EEEEeCCHHHHHHHHhhc-c--ccCCeEEEEeeccCCCCC-----CCCCCCcceEEEeCCCCCCCHHHHHHhhc
Q 017735 66 GFVTYADPSVVDKVIEDT-H--IINGKQVEIKRTIPKGAV-----GSKDFKTKKIFVGGIPSSVNEDEFKDFFM 131 (367)
Q Consensus 66 afV~f~~~~~a~~al~~~-~--~i~g~~i~v~~~~~~~~~-----~~~~~~~~~l~V~~lp~~~te~~L~~~f~ 131 (367)
|.|+|+++..|++.++.. | .++...+.|+...-.... -......++|-|.+||..++|++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999833 3 566666666543222111 11355678999999999999999988754
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.69 E-value=0.0059 Score=50.21 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=55.1
Q ss_pred ccccceEeccCCCC-----CCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCC
Q 017735 15 RQTTTQKMTGLSLT-----PVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIING 88 (367)
Q Consensus 15 ~~~~~~~v~~L~~~-----~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g 88 (367)
.+..|+.|..+... .-.+...++|.+.|.+||++.-++++.+. -.|+|.+-++|.+|++ +...+.+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECC
Confidence 45667777777622 22344566899999999999988888764 5899999999999999 7778999
Q ss_pred eEEEEeeccCCC
Q 017735 89 KQVEIKRTIPKG 100 (367)
Q Consensus 89 ~~i~v~~~~~~~ 100 (367)
+.|.|+...+..
T Consensus 97 ~~l~i~LKtpdW 108 (146)
T PF08952_consen 97 RTLKIRLKTPDW 108 (146)
T ss_dssp EEEEEEE-----
T ss_pred EEEEEEeCCccH
Confidence 999998876653
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0043 Score=60.85 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=52.4
Q ss_pred ccceEeccCCCCCCch--hhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc
Q 017735 17 TTTQKMTGLSLTPVTE--PALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~--~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~ 83 (367)
.+.|.|.++|.-.+.. ....-|.++|+++|+|+.+.+..+..++ ++||.|++|++..+|+.|++++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l 125 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSL 125 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhc
Confidence 4678888888743322 2233467789999999999999888654 9999999999999999999964
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.62 E-value=0.0098 Score=46.03 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=47.2
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCC-------CCCCcceEEEEEeCCHHHHHHHHh-hccccC
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDR-------KTGQPRGFGFVTYADPSVVDKVIE-DTHIIN 87 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~-------~tg~srG~afV~f~~~~~a~~al~-~~~~i~ 87 (367)
..+.|.|-..|. ...+.|.++|++||+|.+..-+... ..-....+..|+|.++.+|++||. +...+.
T Consensus 5 ~~~wVtVFGfp~-----~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 5 SETWVTVFGFPP-----SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp GCCEEEEE---G-----GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred CCeEEEEEccCH-----HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 345577777774 4778889999999999887511110 001122389999999999999999 556666
Q ss_pred CeEE-EEeec
Q 017735 88 GKQV-EIKRT 96 (367)
Q Consensus 88 g~~i-~v~~~ 96 (367)
+..+ -|+..
T Consensus 80 g~~mvGV~~~ 89 (100)
T PF05172_consen 80 GSLMVGVKPC 89 (100)
T ss_dssp TCEEEEEEE-
T ss_pred CcEEEEEEEc
Confidence 6443 34443
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.60 E-value=0.002 Score=63.44 Aligned_cols=78 Identities=6% Similarity=0.149 Sum_probs=63.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhc-cCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc---CCe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL---AGA 179 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~-~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~---~g~ 179 (367)
+....++.|+|.||-.-+|.-+|++++. .++.|+..+|-.- +-.|||.|.+.++|.+.+++||++.+ +.+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3556788999999999999999999997 5677777644322 45799999999999999999999886 457
Q ss_pred eeEeeecC
Q 017735 180 QVEVKKAE 187 (367)
Q Consensus 180 ~l~v~~a~ 187 (367)
.|.|.+..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 77777655
No 179
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.49 E-value=0.0034 Score=58.91 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=59.3
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST---SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~---g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
..|-|.||..+++.++++.||...|+|..+.|+.+..+ ....-.|||.|.+..++..|... .++.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 47899999999999999999999999999999874322 23345799999999999888654 555555666655443
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.18 E-value=0.0016 Score=60.30 Aligned_cols=84 Identities=18% Similarity=0.351 Sum_probs=65.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHH---HhhccCCceeEEEEeeCCCCCC---cccEEEEEeCCHHHHHHHHHhcCCcccCCe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQIMRDHSTSR---SRGFGFITFDTEQAVDDLLAKGNKLELAGA 179 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~---~~f~~~G~v~~v~i~~~~~~g~---~~G~afV~F~~~~~a~~Al~~l~g~~~~g~ 179 (367)
.+..+.+||-.|+..+..+++. +.|.+|+.|.+|.+..++.... ...-++|+|+..++|..||...+++.++++
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 3556788999999887665543 5688999999999888763111 122389999999999999999999999999
Q ss_pred eeEeeecCCC
Q 017735 180 QVEVKKAEPK 189 (367)
Q Consensus 180 ~l~v~~a~~~ 189 (367)
.|+..+...+
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 9888776654
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.87 E-value=0.035 Score=41.00 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=40.5
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
..++|. +|.++...||.++|+.||.|.--+| .|. -|||...+.+.|..|+..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-NDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 345555 9999999999999999999865555 332 699999999999999887653
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.74 E-value=0.12 Score=40.83 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=52.3
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
...+.+...|+.++.++|..+.+.+- .|..++|++|.. .++-.++|+|.+.++|++-.+.+|+..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44555666666777778877777654 566888888743 356679999999999999999999988764
No 183
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.28 E-value=0.044 Score=50.68 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=54.7
Q ss_pred ceEeccCCCCCCchhhHHHH--HHhhccCCCccEEEEeeCCCCCC-cceE--EEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 19 TQKMTGLSLTPVTEPALAQF--IKHFGKYGEITDSVIMKDRKTGQ-PRGF--GFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l--~~~F~~~G~i~~~~i~~~~~tg~-srG~--afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
-++|..|+...+.+.....| .++|.+||.|..|.|-+...+-. ..+. .||+|.+.|+|..||. +...++++.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 56777777755544433333 46899999999888876542211 1222 4999999999999998 5567899988
Q ss_pred EEeecc
Q 017735 92 EIKRTI 97 (367)
Q Consensus 92 ~v~~~~ 97 (367)
+...-.
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 875543
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.25 E-value=0.01 Score=52.89 Aligned_cols=60 Identities=18% Similarity=0.354 Sum_probs=45.8
Q ss_pred HHHHHhhc-cCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEEEEeec
Q 017735 36 AQFIKHFG-KYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRT 96 (367)
Q Consensus 36 ~~l~~~F~-~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~~ 96 (367)
++|...|+ +|++|++++|..+. .-.-+|.++|.|..+++|++|++.++ .+++++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 89999999887654 24567899999999999999999543 677887766544
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.25 E-value=0.014 Score=56.22 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=57.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
.+.+.+.+...++. -.+.++|.++|.+||+|.+|.|-.... .|.|+|.+..+|-+|.. ....|+++.|+|
T Consensus 370 ~dhs~l~lek~~~g---lnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl 440 (526)
T KOG2135|consen 370 VDHSPLALEKSPFG---LNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKL 440 (526)
T ss_pred cccchhhhhccCCC---CchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEE
Confidence 34444444444442 346788999999999999999877633 68999999999955544 667899999999
Q ss_pred eeccCC
Q 017735 94 KRTIPK 99 (367)
Q Consensus 94 ~~~~~~ 99 (367)
.|..+-
T Consensus 441 ~whnps 446 (526)
T KOG2135|consen 441 FWHNPS 446 (526)
T ss_pred EEecCC
Confidence 988764
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.19 E-value=0.029 Score=48.29 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=50.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhcc-CCce---eEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHhcCCcccCC---
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQ-FGDV---QEHQIMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKLELAG--- 178 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~-~G~v---~~v~i~~~~~~--g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g--- 178 (367)
...+|.|.+||..+||+++.+.++. +... ..+.-...... ...-.-|+|.|.+.+++...+..++++.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999997776 5544 23331122111 1123359999999999999999999877644
Q ss_pred --eeeEeeecCCC
Q 017735 179 --AQVEVKKAEPK 189 (367)
Q Consensus 179 --~~l~v~~a~~~ 189 (367)
.+..|++|.-+
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 34566666553
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.06 E-value=0.089 Score=36.79 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=42.9
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccC---CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKY---GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~---G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
+..|.|..+. +++.++|+.+|..| .....|..+-|. .|-|.|.+++.|.+||..
T Consensus 5 peavhirGvd-----~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-----ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-----CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 4567777765 78889999999998 134567777775 588999999999999874
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.02 E-value=0.15 Score=37.76 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~ 84 (367)
.+|.-..|. ++...||.++|+.||.|. |..+.|. .|||...+.+.|+.++....
T Consensus 10 HVFhltFPk----eWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPK----EWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--T----T--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCch----HhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 455555666 999999999999999986 4555443 79999999999999888543
No 189
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.97 E-value=0.063 Score=48.82 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcc-eEEEEEeCCHHHHHHHHhhc--cccCCeEEEEe
Q 017735 29 PVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPR-GFGFVTYADPSVVDKVIEDT--HIINGKQVEIK 94 (367)
Q Consensus 29 ~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~sr-G~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 94 (367)
.+++..++++++.+++||.|..|.|...+..-... =-.||+|+..++|.+|+-++ ..|.++.+...
T Consensus 294 evd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 294 EVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred cccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 45567788999999999999999998876432221 24799999999999998854 47777776543
No 190
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.75 E-value=0.091 Score=38.28 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=35.2
Q ss_pred CCCHHHHHHhhccCC-----ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 120 SVNEDEFKDFFMQFG-----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 120 ~~te~~L~~~f~~~G-----~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.++..+|..++.... .|-.|+|..+ |+||+-... .|+++++.|++..+.+++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467788888886553 4557888765 899987654 788899999999999999999875
No 191
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.69 E-value=0.0086 Score=61.89 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=62.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
..+.|||++||+..+++.+|+..|..+|.|++|.|-+.+.. +-.-|+||.|.+...+-.|...+....|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~-~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK-TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC-cccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 45779999999999999999999999999999999776432 23448999999999888888777776665545544444
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.63 E-value=0.18 Score=41.22 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=54.2
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc-ccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~-~i~g~~i~v 93 (367)
.+..||.|.=|..+.....+.+.|...++.||+|.+|.++-.. .|.|.|++..+|=+|+...+ ...+..+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 3556888876666555567778888889999999999886433 69999999999999988543 334444444
Q ss_pred ee
Q 017735 94 KR 95 (367)
Q Consensus 94 ~~ 95 (367)
.+
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 33
No 193
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.2 Score=47.53 Aligned_cols=59 Identities=8% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCce-eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v-~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
...-...|=|.++|.....+||...|+.|..- -+|+++.|. .||-.|.+...|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 33345678889999999999999999988632 356666553 799999999999999976
No 194
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=94.50 E-value=0.059 Score=44.98 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=61.1
Q ss_pred eEEEEEeCCHHHHHHHHh-hccccCCeEEEEeeccCCCCCCCCCC--CcceEEEeCCCCC-CCHHHHHHhhccCCceeEE
Q 017735 64 GFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDF--KTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEH 139 (367)
Q Consensus 64 G~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~~~~~~~~~~~~~--~~~~l~V~~lp~~-~te~~L~~~f~~~G~v~~v 139 (367)
++..++|.++++++++++ ....+++..+.++...+......... ...-|.|.+||.. .+++.|+++.+.+|++.++
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~v 135 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEV 135 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEE
Confidence 488999999999999998 33467777787777765544333332 3344667899988 6788899999999999998
Q ss_pred EEeeC
Q 017735 140 QIMRD 144 (367)
Q Consensus 140 ~i~~~ 144 (367)
+..+.
T Consensus 136 D~~t~ 140 (153)
T PF14111_consen 136 DENTL 140 (153)
T ss_pred EcCCC
Confidence 87654
No 195
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.46 E-value=0.041 Score=52.39 Aligned_cols=76 Identities=21% Similarity=0.409 Sum_probs=58.2
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cccCCeeeEeeecCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELAGAQVEVKKAEP 188 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g-~~~~g~~l~v~~a~~ 188 (367)
++||++||...++.+||..+|...-.-..-.++.. .+||||...+..-|.+|++.+++ .++.+++++|+..-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 57999999999999999999965421111122222 46999999999999999999875 558899999987766
Q ss_pred CCC
Q 017735 189 KKP 191 (367)
Q Consensus 189 ~~~ 191 (367)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 543
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.40 E-value=0.099 Score=46.77 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=52.5
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~ 83 (367)
..|+|.||.. -++.+.|.+.|+.|++|...+++.|- ..+..+-.+|+|...-.+.+|+...
T Consensus 32 a~l~V~nl~~----~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQ----GASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecch----hhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 5788999998 89999999999999999988888775 4677778999999999999888744
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.08 E-value=1.6 Score=39.98 Aligned_cols=152 Identities=9% Similarity=0.110 Sum_probs=92.1
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCC-------CCcceEEEEEeCCHHHHHHHHh----hc--
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKT-------GQPRGFGFVTYADPSVVDKVIE----DT-- 83 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~t-------g~srG~afV~f~~~~~a~~al~----~~-- 83 (367)
++.+.+.|+.. +++..++.+.|.+|++|++|.++.+..+ -+..-...+.|.+.+.+..... ++
T Consensus 15 TRSLLfeNv~~----sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 15 TRSLLFENVNN----SIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred eHHHHHhhccc----cccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34566667766 8999999999999999999999987611 1233467888888887654322 22
Q ss_pred --cccCCeEEEEeeccC--------C---CCC-----C------CCCCCcceEEEeCCCCCCCHHHHHHhh---ccC---
Q 017735 84 --HIINGKQVEIKRTIP--------K---GAV-----G------SKDFKTKKIFVGGIPSSVNEDEFKDFF---MQF--- 133 (367)
Q Consensus 84 --~~i~g~~i~v~~~~~--------~---~~~-----~------~~~~~~~~l~V~~lp~~~te~~L~~~f---~~~--- 133 (367)
+.+....|.+....- . .+. . .....++.|.|.--....+++-|.+.+ ..-
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCc
Confidence 245556665544321 0 000 0 012345667775443333333333322 211
Q ss_pred -CceeEEEEeeCCC--CCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 134 -GDVQEHQIMRDHS--TSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 134 -G~v~~v~i~~~~~--~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
=.|+.|.|+.... ..-++-||+++|-+..-|.+.++-|.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2577888876432 23457799999999988888877554
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.94 E-value=0.26 Score=45.11 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=53.1
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee-eEeeecC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ-VEVKKAE 187 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~-l~v~~a~ 187 (367)
..-|-|-++|.... ..|..+|++||.|+++....+ --+-+|.|.+.-+|++||.+ |+..|++.. |-|+.+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 44555556665433 567789999999988765522 23899999999999999998 888888644 5566544
Q ss_pred CC
Q 017735 188 PK 189 (367)
Q Consensus 188 ~~ 189 (367)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 44
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.84 E-value=0.04 Score=56.76 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=64.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc--CCeeeEeeecCC
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL--AGAQVEVKKAEP 188 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~--~g~~l~v~~a~~ 188 (367)
+.++.|.+-.++-..|..+|++|+.|.+++.+++-. .|.|+|.+.+.|..|+++|+++++ .+.+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 345555666677788999999999999999988743 799999999999999999998885 588899999887
Q ss_pred CCCCCC
Q 017735 189 KKPNLP 194 (367)
Q Consensus 189 ~~~~~~ 194 (367)
-+...+
T Consensus 374 ~~~~ep 379 (1007)
T KOG4574|consen 374 LPMYEP 379 (1007)
T ss_pred cccccC
Confidence 655443
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.77 E-value=0.07 Score=52.59 Aligned_cols=65 Identities=6% Similarity=0.149 Sum_probs=48.9
Q ss_pred eEeccCCCCCCchhhHHHHHHhhcc--CCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh----hccccCCeEEEE
Q 017735 20 QKMTGLSLTPVTEPALAQFIKHFGK--YGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE----DTHIINGKQVEI 93 (367)
Q Consensus 20 ~~v~~L~~~~~~~~t~~~l~~~F~~--~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~----~~~~i~g~~i~v 93 (367)
+++..|+. .+-+|+|+-+|+. |-.+.+|.+..+. --||+|++..||++|.+ +.++|.++.|..
T Consensus 178 vilREIpe----ttp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 178 VILREIPE----TTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EEEeecCC----CChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 44444444 7778889999975 6678888887664 47999999999999987 445788888865
Q ss_pred ee
Q 017735 94 KR 95 (367)
Q Consensus 94 ~~ 95 (367)
++
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.76 E-value=0.21 Score=43.30 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=45.9
Q ss_pred CHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CcccCCeeeEeeecCCC
Q 017735 122 NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVEVKKAEPK 189 (367)
Q Consensus 122 te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~--g~~~~g~~l~v~~a~~~ 189 (367)
..+.|+++|..+..+..+.+++. -.-..|.|.+.++|.+|...|+ ...+.+..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888877754 2258999999999999999999 89999999999887543
No 202
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.55 E-value=0.37 Score=34.21 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=41.9
Q ss_pred CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 120 SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 120 ~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
.++-++|+..+.+|.- .+|..|+ .|| ||.|.+.++|+++....++..+-...|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999998843 3455553 233 89999999999999998888877666554
No 203
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.51 E-value=0.058 Score=53.57 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=48.2
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhc-cCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFG-KYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~-~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~ 84 (367)
..+.++.|+|.||.- -.|+-+|++++. .++.|++.+| |+. |..|||.|.+.++|.+.+..+|
T Consensus 440 R~~~SnvlhI~nLvR----PFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~Alh 502 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVR----PFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALH 502 (718)
T ss_pred CCCccceEeeecccc----cchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHh
Confidence 344567899999988 899999999999 5667777633 332 3489999999999998777665
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.32 E-value=0.058 Score=54.26 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=65.4
Q ss_pred CCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee
Q 017735 101 AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 180 (367)
Q Consensus 101 ~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~ 180 (367)
+......+..+|||+|+...+.++-++.+...||.|..+.... |.|++|..+..+..|+..++...++++.
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 3344556778999999999999999999999999888776543 8999999999999999999999998888
Q ss_pred eEeeec
Q 017735 181 VEVKKA 186 (367)
Q Consensus 181 l~v~~a 186 (367)
+.+...
T Consensus 103 l~~~~d 108 (668)
T KOG2253|consen 103 LIENVD 108 (668)
T ss_pred hhccch
Confidence 777653
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.09 E-value=0.047 Score=52.78 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=57.7
Q ss_pred cceEEEeCCCCCC-CHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 109 TKKIFVGGIPSSV-NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 109 ~~~l~V~~lp~~~-te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
.+.|-+.-+|..+ +-++|..+|.+||+|+.|.|-.... .|.|+|.+..+|-+|... +...|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhcc-ccceecCceeEEEEec
Confidence 3455566666664 5579999999999999998855421 699999999999777654 7889999999999977
Q ss_pred C
Q 017735 188 P 188 (367)
Q Consensus 188 ~ 188 (367)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 6
No 206
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.66 E-value=1.4 Score=45.94 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=44.9
Q ss_pred CCCCHHHHHHhhccCCce-----eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 119 SSVNEDEFKDFFMQFGDV-----QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 119 ~~~te~~L~~~f~~~G~v-----~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
..++..+|..++..-..| -.|+|..+ |.||+-.. +.|++.++.|+...+.+++|.|+.+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 347777887777655434 46777655 78888754 45778888899999999999999875
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.45 E-value=0.56 Score=45.37 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=58.6
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccC-CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~-G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
...|+|-.+|..++-.||..|...+ -.|..|+|++|... ++=.++|+|.+.++|....+.+|+..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998655 46889999997543 35568999999999999999999998875
No 208
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.99 E-value=0.5 Score=42.79 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=61.6
Q ss_pred ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEee---------ccCCCCCCC-------------
Q 017735 48 ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKR---------TIPKGAVGS------------- 104 (367)
Q Consensus 48 i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~---------~~~~~~~~~------------- 104 (367)
..+|+|..+. .-||.|+.+-...-.++ -+..+++..|++.- +..+-+.++
T Consensus 67 ~dsckiresn-------id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kd 139 (445)
T KOG2891|consen 67 FDSCKIRESN-------IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKD 139 (445)
T ss_pred ccceeecccc-------cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhh
Confidence 4556666554 56888987665555554 33356676666532 111111111
Q ss_pred -----CCCCcceEEEeCCCCC------------CCHHHHHHhhccCCceeEEEEeeC-----CCCCCcccEEEEE
Q 017735 105 -----KDFKTKKIFVGGIPSS------------VNEDEFKDFFMQFGDVQEHQIMRD-----HSTSRSRGFGFIT 157 (367)
Q Consensus 105 -----~~~~~~~l~V~~lp~~------------~te~~L~~~f~~~G~v~~v~i~~~-----~~~g~~~G~afV~ 157 (367)
+-....||++..||-. .+|+.|+..|+.||.|..|.|+.. ..+++..|.-|-.
T Consensus 140 mdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~g 214 (445)
T KOG2891|consen 140 MDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHG 214 (445)
T ss_pred hhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeec
Confidence 1223568888888843 367889999999999999988642 3455554444433
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.72 E-value=0.33 Score=44.52 Aligned_cols=59 Identities=17% Similarity=0.386 Sum_probs=42.7
Q ss_pred hhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeE-EEEeecc
Q 017735 33 PALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQ-VEIKRTI 97 (367)
Q Consensus 33 ~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~-i~v~~~~ 97 (367)
-....|+.+|++||+|++++...+-+ +-+|.|.+..+|++||. +..+|++.. |-|+..+
T Consensus 208 g~~s~vL~~F~~cG~Vvkhv~~~ngN------wMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 208 GQVSIVLNLFSRCGEVVKHVTPSNGN------WMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cchhHHHHHHHhhCeeeeeecCCCCc------eEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 34556889999999998877663322 88999999999999998 555565543 3344433
No 210
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=0.41 Score=47.64 Aligned_cols=32 Identities=6% Similarity=0.284 Sum_probs=27.3
Q ss_pred EEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 153 FGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
||+|+|.+.+.|.++.+.++++++......+.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 89999999999999999999999976544443
No 211
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.23 E-value=0.22 Score=46.40 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=49.4
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCC---cceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQ---PRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~---srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
.++|-.|+..+..+..++. .+.|.+|+.|..|.+..+..+-. .---++|+|+.+++|..||+ +...++++.|+.
T Consensus 79 lvyvvgl~~~~ade~~l~~-~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLER-TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhCCCccccchhhhhC-cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4555566653222222222 45788999999999888763111 11238999999999999999 334666776555
Q ss_pred eeccC
Q 017735 94 KRTIP 98 (367)
Q Consensus 94 ~~~~~ 98 (367)
.....
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 44433
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.08 E-value=0.027 Score=56.51 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=53.2
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v 93 (367)
+..++||.++.. .+..+-++.++..||.|..++.+. |+|.+|..+..+..|+.. ...++++.+.+
T Consensus 39 ~~~~vfv~~~~~----~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 39 PRDTVFVGNISY----LVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCceeEecchhh----hhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 456899999998 788888899999999998877664 999999999988888773 34566666655
Q ss_pred ee
Q 017735 94 KR 95 (367)
Q Consensus 94 ~~ 95 (367)
+.
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 44
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.55 E-value=1.5 Score=37.94 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=43.1
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc----ccCCeEEEEeeccCC
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH----IINGKQVEIKRTIPK 99 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~----~i~g~~i~v~~~~~~ 99 (367)
....+.|+++|..+..+....+++... -..|.|.+.++|.+|...++ .+.+..+++....+.
T Consensus 6 ~~~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 6 PDNLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp ---HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhhHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 456688999999999999888887664 68899999999999988654 678888888776443
No 214
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=88.18 E-value=13 Score=31.88 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=8.9
Q ss_pred HHHHHhhccCCceeEEEEe
Q 017735 124 DEFKDFFMQFGDVQEHQIM 142 (367)
Q Consensus 124 ~~L~~~f~~~G~v~~v~i~ 142 (367)
++|-++=|-|++|.++.+.
T Consensus 89 ~qIGKVDEIfG~i~d~~fs 107 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHFS 107 (215)
T ss_pred hhhcchhhhcccccccEEE
Confidence 3443333445566655443
No 215
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=87.97 E-value=0.37 Score=43.19 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=49.3
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCC--------CCcce----EEEEEeCCHHHHHHHHhh
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKT--------GQPRG----FGFVTYADPSVVDKVIED 82 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~t--------g~srG----~afV~f~~~~~a~~al~~ 82 (367)
.-.||+.+||+ .+....|+++|++||+|-.|.|-....+ +.++. -+.|+|.+...|+++.+.
T Consensus 74 ~GVvylS~IPp----~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 74 TGVVYLSNIPP----YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred ceEEEeccCCC----ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 35799999999 9999999999999999998888876544 11211 256999999999987774
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.62 E-value=2.2 Score=41.44 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=46.5
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccC-CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKY-GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~-G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~ 83 (367)
.+.+.|--+|. .++..||..++..+ -.|.+++|++|... .+=.+.|+|.+.++|....++.
T Consensus 74 ~~mLcilaVP~----~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~ef 135 (493)
T KOG0804|consen 74 STMLCILAVPA----YMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEF 135 (493)
T ss_pred CcEEEEEeccc----cccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHc
Confidence 45566665665 88999998887765 36899999996532 3446899999999999998843
No 217
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=86.53 E-value=3.8 Score=32.33 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=39.3
Q ss_pred hhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeE
Q 017735 32 EPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQ 90 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~ 90 (367)
.++.++|..+.+.+- .|..++|+++.. .++=.+.++|.+.++|++..++ ++|++
T Consensus 24 ~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~---fNGk~ 78 (110)
T PF07576_consen 24 MTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEE---FNGKP 78 (110)
T ss_pred cccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHH---hCCCc
Confidence 566667776666654 567788888753 3666899999999999998885 44543
No 218
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.11 E-value=0.85 Score=39.26 Aligned_cols=65 Identities=6% Similarity=0.053 Sum_probs=37.8
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhcc-CCCc---cEEEEeeC-CCCCC-cceEEEEEeCCHHHHHHHHhh
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGK-YGEI---TDSVIMKD-RKTGQ-PRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~-~G~i---~~~~i~~~-~~tg~-srG~afV~f~~~~~a~~al~~ 82 (367)
+++...|.|..||+ .+|++++.+.++. +... ..+.-... ..... .-.-|+|.|.+.+++...++.
T Consensus 4 ~~~~~KvVIR~LPP----~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 4 EKEGTKVVIRRLPP----NLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR 74 (176)
T ss_dssp -----EEEEEEE-T----TS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH
T ss_pred cccCceEEEeCCCC----CCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh
Confidence 34566899999999 9999999887776 4444 22221111 11111 234699999999998888774
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=84.29 E-value=0.79 Score=47.69 Aligned_cols=62 Identities=8% Similarity=0.215 Sum_probs=48.6
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc----ccCCeEEEEeeccCC
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH----IINGKQVEIKRTIPK 99 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~----~i~g~~i~v~~~~~~ 99 (367)
..+...|..+|.+|++|.+++.+++.. .|.|+|.+.+.|..|++.++ .+.+-+.+|..+...
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 667778889999999999999998876 89999999999999998654 233444555555443
No 220
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=84.24 E-value=1.7 Score=31.02 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=44.6
Q ss_pred HHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCC
Q 017735 36 AQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99 (367)
Q Consensus 36 ~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~ 99 (367)
++|++.|...| +|..+.-|..+.++.+.-.-||+.+...+.+++++ ...+.++.|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~-Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK-IKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee-hHhhCCeEEEEecCCCC
Confidence 34556666666 67788888887777788889999988777444443 44578888888776543
No 221
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=84.19 E-value=1.5 Score=31.27 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=45.9
Q ss_pred HHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCC
Q 017735 36 AQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPK 99 (367)
Q Consensus 36 ~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~ 99 (367)
++|++.|++.| ++..+.-|....++.+.-.-||+.....+... +-+++.+.++.|.|++....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCccc
Confidence 45666677777 78888888888777777888998887766555 33455688888888876443
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.29 E-value=5.7 Score=28.19 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=32.9
Q ss_pred chhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 31 TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 31 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
..++.++|+..|..|. -.+|+.++ | | =||.|.+.++|+++.+.
T Consensus 10 ~~~~v~d~K~~Lr~y~---~~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~ 52 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR---WDRIRDDR-T----G-FYIVFNDSKEAERCFRA 52 (66)
T ss_pred CCccHHHHHHHHhcCC---cceEEecC-C----E-EEEEECChHHHHHHHHh
Confidence 3678899999999984 33455555 3 3 38999999999999984
No 223
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=82.71 E-value=2.2 Score=36.27 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=37.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHh
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~-g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
...+++|.. +.+...++|.++.+ +++..|..-..... -..+|-.||+|.+.+.|.++++.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 345567766 33333344444444 67777665543211 24678899999999999998765
No 224
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=81.50 E-value=2.2 Score=40.28 Aligned_cols=56 Identities=9% Similarity=0.127 Sum_probs=38.8
Q ss_pred EEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhc
Q 017735 66 GFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFM 131 (367)
Q Consensus 66 afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~ 131 (367)
|||+|+++++|+.|++..+..+...+.++.+. +.+-|+..||..+..+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~AP----------eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAP----------EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCC----------CcccccccccCCChHHHHHHHHHH
Confidence 79999999999999995544444445544442 334577888877777777665554
No 225
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=78.97 E-value=4.5 Score=28.86 Aligned_cols=64 Identities=17% Similarity=0.360 Sum_probs=44.6
Q ss_pred HHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 124 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 124 ~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
++|++.|...| +|..|.-+..+.+..+--.-||+.+...+..+++ +=..|.+..|+|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCCC
Confidence 46666676655 6778887877767777777888888776644443 4456788889998766543
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.81 E-value=15 Score=33.73 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=39.1
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCce-eEEEEeeCCCCCCcccEEEEEeCCH-------HHHHHHHHhcC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTE-------QAVDDLLAKGN 172 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v-~~v~i~~~~~~g~~~G~afV~F~~~-------~~a~~Al~~l~ 172 (367)
.-|+|.||+.++--.||+..+.+.+.+ .++.+.- +.+-||+.|-+. +++++++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 469999999999999999988765432 2333321 356799999764 45555555543
No 227
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=76.12 E-value=5 Score=28.60 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 124 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 124 ~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
++|++.|++.| +|..|.-+..+.+..+.-.-+|+.+...+... -|+=..|.+++|+|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 46777777776 67888888877766666677888877654444 234456888899998765543
No 228
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=74.41 E-value=56 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.096 Sum_probs=15.8
Q ss_pred EEEEEeCCHHHHHHHHhhccccCCeEEEEee
Q 017735 65 FGFVTYADPSVVDKVIEDTHIINGKQVEIKR 95 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~~~~~i~g~~i~v~~ 95 (367)
.|-|.+++.+++-++-+-+-.|+...+.|+.
T Consensus 80 NAPIylenk~qIGKVDEIfG~i~d~~fsIK~ 110 (215)
T KOG3262|consen 80 NAPIYLENKEQIGKVDEIFGPINDVHFSIKP 110 (215)
T ss_pred CCceeecchhhhcchhhhcccccccEEEEec
Confidence 3556667766665554433334444444443
No 229
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=73.87 E-value=2.6 Score=36.00 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=50.8
Q ss_pred cceEEEeCCCCCCCH-----HHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCe-eeE
Q 017735 109 TKKIFVGGIPSSVNE-----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-QVE 182 (367)
Q Consensus 109 ~~~l~V~~lp~~~te-----~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~-~l~ 182 (367)
..++.+.+|+..+.. ...+.+|.++-+....++++. ..+.-|.|.++++|..|..+++...|.++ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 345667777766432 223455555554444444432 34677899999999999999999999988 777
Q ss_pred eeecCCC
Q 017735 183 VKKAEPK 189 (367)
Q Consensus 183 v~~a~~~ 189 (367)
.-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7776654
No 230
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=73.69 E-value=17 Score=29.81 Aligned_cols=117 Identities=13% Similarity=0.194 Sum_probs=52.4
Q ss_pred eEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEeec--
Q 017735 20 QKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT-- 96 (367)
Q Consensus 20 ~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~~-- 96 (367)
.++..+...-...+..++|+++|+..| ..+|+-... ++. ..|-.-.++++++..|+ .+....+..+.|...
T Consensus 6 aLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~--SGN---vvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~ 79 (137)
T PF08002_consen 6 ALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQ--SGN---VVFESDRDPAELAAKIEKALEERFGFDVPVIVRSA 79 (137)
T ss_dssp EEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--TTE---EEEEESS-HHHHHHHHHHHHHHH-TT---EEEEEH
T ss_pred EEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEe--eCC---EEEecCCChHHHHHHHHHHHHHhcCCCeEEEEeeH
Confidence 455666555556788999999999987 445544332 221 22222334445555554 222233433333221
Q ss_pred ------cCCCCCC-CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEe
Q 017735 97 ------IPKGAVG-SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142 (367)
Q Consensus 97 ------~~~~~~~-~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~ 142 (367)
....+.. ....+.++++|.-|....+.+.+.++-..-...+.+.+.
T Consensus 80 ~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 80 EELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp HHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred HHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 1111111 123467788888888888888888887665555655553
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.67 E-value=3.4 Score=32.90 Aligned_cols=38 Identities=16% Similarity=0.453 Sum_probs=22.4
Q ss_pred CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCH
Q 017735 121 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 161 (367)
Q Consensus 121 ~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~ 161 (367)
++.++|++.|+.|.+++ |+.+.++. -+.++|+|+|.+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 35578999999998876 44444432 4688999999764
No 232
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=69.55 E-value=6.1 Score=33.67 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=33.4
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCC--CcceEEEEEeCCHHHHHHHHh
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTG--QPRGFGFVTYADPSVVDKVIE 81 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg--~srG~afV~f~~~~~a~~al~ 81 (367)
+...++|..+-+ +.+..+.+.+.. .+ ..+|..||+|.+.++|.++++
T Consensus 120 d~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 120 DDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 555666666555 566666655443 23 578999999999999999877
No 233
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=68.76 E-value=29 Score=33.56 Aligned_cols=26 Identities=4% Similarity=0.262 Sum_probs=22.9
Q ss_pred EEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 153 FGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
||+|++++.+.+..+...+++.++..
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred EEEEEeccchhhHHHHhccCcccccc
Confidence 79999999999999999988887764
No 234
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.41 E-value=6.7 Score=29.56 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=23.9
Q ss_pred EEEEeCCHHHHHHHHHh-cCCcccCCeeeEeee
Q 017735 154 GFITFDTEQAVDDLLAK-GNKLELAGAQVEVKK 185 (367)
Q Consensus 154 afV~F~~~~~a~~Al~~-l~g~~~~g~~l~v~~ 185 (367)
|+|+|++++.|+..+++ -+...++...++|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 78999999999999875 245556666665543
No 235
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=65.97 E-value=10 Score=29.88 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=54.1
Q ss_pred HHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEeeccCCCCCCC--CCCCcceE
Q 017735 36 AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGS--KDFKTKKI 112 (367)
Q Consensus 36 ~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~~~~~~~~~~--~~~~~~~l 112 (367)
+.|.+.|+.-|+|.+|..+..- .+ ++|.--+. .+..+++. |.|-.........- ...-.+.+
T Consensus 16 nKLSDYfeSPGKI~svItvtqy-------------pd-ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTPsgnnv~ 80 (145)
T TIGR02542 16 NKLSDYFESPGKIQSVITVTQY-------------PD-NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTPSGNNVI 80 (145)
T ss_pred chhhHHhcCCCceEEEEEEecc-------------CC-chhhheeeeehhhccCc-EEEccCCCcccEEEecCCCCCcee
Confidence 5677889999999887665432 21 22222222 22234554 43332221111100 00111222
Q ss_pred EEeCCCCCCCHHHHHHhhcc---CCceeEEEEeeCCCCCCcccEEEEEeCCH
Q 017735 113 FVGGIPSSVNEDEFKDFFMQ---FGDVQEHQIMRDHSTSRSRGFGFITFDTE 161 (367)
Q Consensus 113 ~V~~lp~~~te~~L~~~f~~---~G~v~~v~i~~~~~~g~~~G~afV~F~~~ 161 (367)
--|+.+|-.+|+++|.+ |--|.+-.+.+|-...-+--.||..|...
T Consensus 81 ---F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 81 ---FPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ---cCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 25677899999999964 33344444444432222333688888765
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.00 E-value=0.89 Score=45.13 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=52.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
.+++|||.|++..++-++|..+++.+--+..+.+..+....+..-+..|+|+---.+..|+.+||++.+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4678999999999999999999999877777766554333334456789998777777777766665543
No 237
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=62.34 E-value=33 Score=23.24 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=40.4
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCH----HHHHHHHHh
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLAK 170 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~----~~a~~Al~~ 170 (367)
||.|.++.-.-....|++.+.+.-.|..+.+-.. ...+-|+|+.. +++.++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4677777777777889999999888988888654 23688888754 566666665
No 238
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.49 E-value=16 Score=33.78 Aligned_cols=83 Identities=13% Similarity=0.352 Sum_probs=59.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCC-------CCCCcccEEEEEeCCHHHHHHH----HHhcC-
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH-------STSRSRGFGFITFDTEQAVDDL----LAKGN- 172 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~-------~~g~~~G~afV~F~~~~~a~~A----l~~l~- 172 (367)
....++.|.+.|+..+++-.++...|.+|++|+.|.++.+. ...+..-...+.|-+.+.+... ++.|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34467889999999999999999999999999999999875 1223345678899887766543 33333
Q ss_pred -CcccCCeeeEeeecC
Q 017735 173 -KLELAGAQVEVKKAE 187 (367)
Q Consensus 173 -g~~~~g~~l~v~~a~ 187 (367)
+..+....|+|.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 234566667766654
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.33 E-value=9.2 Score=36.06 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.1
Q ss_pred EEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCCC
Q 017735 154 GFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 154 afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
|||+|+++++|..|++.+.... .+.++|+.|.++++-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~ 38 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDII 38 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccccc
Confidence 7999999999999998654433 2455777666655443
No 240
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=59.57 E-value=35 Score=24.52 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=27.8
Q ss_pred hhhHHHHHHhhccCC-----CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEEeec
Q 017735 32 EPALAQFIKHFGKYG-----EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKRT 96 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G-----~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~~ 96 (367)
.++..+|..++.... .|-.|.|..+ |+||+.... .|+++++.+ ..+.+++|.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567777877777664 3455666543 788887654 455555533 3788999988754
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.77 E-value=20 Score=34.44 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=41.1
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCC-ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGE-ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~-i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~ 84 (367)
.|-|.+++. +...+||...|+.|.. --+|+.|.|. .||..|.+...|..||...|
T Consensus 393 VlEIydfp~----efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 393 VLEIYDFPD----EFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred eeEeccCch----hhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 455556665 7777889999999864 3456666555 69999999999999998443
No 242
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.17 E-value=10 Score=30.24 Aligned_cols=54 Identities=6% Similarity=0.173 Sum_probs=28.0
Q ss_pred ceEeccCCCCCC-----chhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHH
Q 017735 19 TQKMTGLSLTPV-----TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSV 75 (367)
Q Consensus 19 ~~~v~~L~~~~~-----~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~ 75 (367)
++.|.|++.... .-++.++|++.|+.|.+++ ++++.++. -+.+++.|+|...-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 455556654221 2346678899999987775 66666553 578999999986554
No 243
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=55.82 E-value=29 Score=25.43 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=38.7
Q ss_pred EEEeCCCCCCCHHHHHHhhccC-C-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 112 IFVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~~~-G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
-|+-.++..++..+|++.+++. + +|..|..+.-+. ..--|||++...+.|.+...++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 3445567788889999888774 2 556666655432 2235999998888887776553
No 244
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=54.74 E-value=13 Score=35.85 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=41.9
Q ss_pred hHHHHHHhhcc--CCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 34 ALAQFIKHFGK--YGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 34 t~~~l~~~F~~--~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
+.+++...|.. +.++..+.+.++.....+++..|++|...+.+++++..
T Consensus 195 ~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 195 QQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 34578888888 67888888888887888999999999999999999863
No 245
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=53.27 E-value=1.3e+02 Score=25.08 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=65.9
Q ss_pred HhhccCC-CccEEEEeeCCCCCCcceEEEEEeC--CHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeC
Q 017735 40 KHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYA--DPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGG 116 (367)
Q Consensus 40 ~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~--~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~ 116 (367)
+-++++| +|..+.--++++++ ++--.-|.|+ +++.+++.++.+ +.+|-.|.-.... ........|.|+.
T Consensus 24 qPls~~g~NiItIiH~r~kk~g-~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~------~~~~~~~vvLIGh 95 (170)
T COG2061 24 QPLSKTGANIITIIHSRDKKYG-PRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIRFDGA------RLREKTDVVLIGH 95 (170)
T ss_pred cchhhcCccEEEEEeecCcccC-CceeEEEEEEecccHHHHHHHHHH-HhCCcEEEEecCc------CcceeEeEEEEEe
Confidence 3345554 56666555665432 3333444554 344455555543 3344333211111 1123456788888
Q ss_pred CCCCCCHHHHHHhhc-cCCceeEEEEeeCCCCCCcccEEEEEe--CCHHHHHHHHHhcCCccc
Q 017735 117 IPSSVNEDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITF--DTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 117 lp~~~te~~L~~~f~-~~G~v~~v~i~~~~~~g~~~G~afV~F--~~~~~a~~Al~~l~g~~~ 176 (367)
+-..--++.|..+=+ .+-.|.++.+......+.| .|.++| .++++.++|+..++....
T Consensus 96 iv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~S--sA~iti~a~~~e~l~ea~~~l~ev~~ 156 (170)
T COG2061 96 IVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGES--SARITIIAVGKEKLDEALRRLKEVAM 156 (170)
T ss_pred eecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCc--ceeEEEEEcChhHHHHHHHHHHHHHh
Confidence 766544444444432 2336777777554344444 455555 578999999887765443
No 246
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=52.72 E-value=1.4e+02 Score=28.42 Aligned_cols=125 Identities=13% Similarity=0.180 Sum_probs=64.2
Q ss_pred cccccceEec---cCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccC-Ce
Q 017735 14 NRQTTTQKMT---GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN-GK 89 (367)
Q Consensus 14 ~~~~~~~~v~---~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~-g~ 89 (367)
.+.+.++.+. +.++.++.+....-+..++++||.-.+++|.+.=- .++|=+-|.|.-+-. + .++..+.++ ++
T Consensus 106 ~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-~-~l~~i~l~~~g~ 181 (326)
T cd00874 106 ADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-K-LLPPLLLEERGE 181 (326)
T ss_pred CCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-c-CCCcceeecCCC
Confidence 3444555544 45554555555556666778888766777765321 244445555543221 0 111110000 11
Q ss_pred EEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHH---HhhccCCceeEEEEeeCCCCCCcccEEEEEe
Q 017735 90 QVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158 (367)
Q Consensus 90 ~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~---~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F 158 (367)
..++ .-..++.+||..+.+.+++ +++.+. .+.+|.+..+...+.+.|++++.+
T Consensus 182 i~~i---------------rg~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 182 IEKI---------------RGISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred eEEE---------------EEEEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 1111 1245788999888776654 445552 234556655554567778766544
No 247
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.28 E-value=34 Score=25.52 Aligned_cols=56 Identities=5% Similarity=0.126 Sum_probs=38.3
Q ss_pred EEeCCCCCCCHHHHHHhhccC-C-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 113 FVGGIPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 113 ~V~~lp~~~te~~L~~~f~~~-G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
|+--++..++..+|++.+++. + +|.+|..+..+. ..--|+|++...++|.+...++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 333456677888998888774 3 566676665532 2235999999988888876654
No 248
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.27 E-value=28 Score=24.29 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.4
Q ss_pred HHHHHhhccCCceeEEEEeeC
Q 017735 124 DEFKDFFMQFGDVQEHQIMRD 144 (367)
Q Consensus 124 ~~L~~~f~~~G~v~~v~i~~~ 144 (367)
++|+++|++.|+|.-+-|..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 689999999999988766543
No 249
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.83 E-value=3 Score=40.32 Aligned_cols=78 Identities=9% Similarity=-0.120 Sum_probs=54.5
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
.+.|+..||..+++++|.-+|+.++.|..+.+.+-...+.-+-.+||+-... ++..+|..+.-..+.+..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567888999999999999999999999988877666666666788776543 34445544444445555566655443
No 250
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=49.40 E-value=23 Score=28.32 Aligned_cols=23 Identities=4% Similarity=-0.129 Sum_probs=16.7
Q ss_pred EEEEEeCCHHHHHHHHHhcCCcc
Q 017735 153 FGFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~l~g~~ 175 (367)
-|+.-|.+-+.|-.|..-|-+..
T Consensus 115 raifm~kdge~a~e~k~fll~qd 137 (164)
T KOG4357|consen 115 RAIFMFKDGEQAFEAKDFLLGQD 137 (164)
T ss_pred eEEEEEeChhHHHHHHHHhhccc
Confidence 48888999888888876554433
No 251
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=48.65 E-value=1.5e+02 Score=28.55 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=10.8
Q ss_pred EEEEEeCCHHHHHHHHhh
Q 017735 65 FGFVTYADPSVVDKVIED 82 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~~ 82 (367)
..+|+|+.+-+++++.+.
T Consensus 255 sv~ve~~~~~~~~~~~~~ 272 (347)
T PRK06728 255 SVYIELEKEATVAEIKEV 272 (347)
T ss_pred EEEEEECCCCCHHHHHHH
Confidence 467888755555554443
No 252
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=48.35 E-value=1.1e+02 Score=24.66 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=38.9
Q ss_pred CCHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 121 VNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 121 ~te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
.+.+.+.++.++-+ .++.+....+ -..|.|++.++-.+|.+.|+...-++-.|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 45567777777665 4455544433 57899999998888877765554445566665554
No 253
>TIGR02517 type_II_gspD general secretion pathway protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See PubMed:12654803). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516).
Probab=48.11 E-value=2.3e+02 Score=29.22 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=17.7
Q ss_pred EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 139 HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 139 v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
++|..|..+ -+.|...+++..+++.+.++.
T Consensus 295 ~~i~~d~~~-----n~liv~~~~~~~~~i~~~i~~ 324 (594)
T TIGR02517 295 VSGSADKAT-----NSLIITASPQDYKNIRAVIKQ 324 (594)
T ss_pred eeEEEcCCc-----cEEEEEcCHHHHHHHHHHHHH
Confidence 445555433 477888888776665444443
No 254
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=47.01 E-value=2.5e+02 Score=28.70 Aligned_cols=114 Identities=10% Similarity=0.130 Sum_probs=62.7
Q ss_pred hhhHHHHHHhhccCCCccEEEEee--CCCCCCcceEEEEEeCC-----HHHHHHHHhhccccCCeEEEEeeccCCCCCCC
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMK--DRKTGQPRGFGFVTYAD-----PSVVDKVIEDTHIINGKQVEIKRTIPKGAVGS 104 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~--~~~tg~srG~afV~f~~-----~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~ 104 (367)
.+...+|++.+.++..|.++.++- +.........++|...+ .+++.+.+.+. .+.
T Consensus 471 ~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~------------------L~~ 532 (600)
T PRK08279 471 NVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYER------------------LPA 532 (600)
T ss_pred ccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhh------------------Ccc
Confidence 567788888888888898887743 22222233455555542 22233333210 112
Q ss_pred CCCCcceEEEeCCCCC----CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 105 KDFKTKKIFVGGIPSS----VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~----~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
...+...++|..||.. ++...|++++...-+|...-.+.|+.. . +++-..++-.|+-+.
T Consensus 533 ~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~ 595 (600)
T PRK08279 533 YAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGS---G--GYVPLTAELYAEIAA 595 (600)
T ss_pred ccCCeEEEeecCCCCCcchhhhHHHHhhcCCCccccCCeeEEEecCC---C--ceEecCHHHHHHHhc
Confidence 2234456677777766 456777776655555665555555432 3 445556666655543
No 255
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=46.49 E-value=91 Score=21.64 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 34 t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
..+++.+.+..+.+|.+|..+. +...=...|.+.+.++.++.+.+
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vt----G~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVT----GEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEES----SSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEe----CCCCEEEEEEECCHHHHHHHHHH
Confidence 5788899999999999999884 55556788999999999998774
No 256
>PRK11901 hypothetical protein; Reviewed
Probab=46.06 E-value=37 Score=31.97 Aligned_cols=53 Identities=6% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEE--EeCCHHHHHHHHHhcCC
Q 017735 119 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI--TFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 119 ~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV--~F~~~~~a~~Al~~l~g 173 (367)
-..+++.|++|..++. +..++|......++.- |.+| .|.+.++|++|++.|-.
T Consensus 252 Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 252 SASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred cCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 3456788888887764 4556666554444432 3333 67899999999998743
No 257
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=45.85 E-value=1.2e+02 Score=22.15 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=38.9
Q ss_pred EEEeCCCCCCCHHHHHHhhcc-------CCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 112 IFVGGIPSSVNEDEFKDFFMQ-------FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~~-------~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
|-..+||..+|.++|.++..+ +..|..++...+.. ..+-||+.+=.|+|++.++.++
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~ 66 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARR 66 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHH
Confidence 456788988999998776643 33455555444422 2356788887899999888776
No 258
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.58 E-value=28 Score=33.40 Aligned_cols=70 Identities=13% Similarity=0.272 Sum_probs=47.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCc-eeEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~-v~~v~i~~~~~~--g~~~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
....|.|.+||..+++++|.+....+-. |..+.+...... ......|+|.|..++++..-...+++++|-
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3467889999999999999888776432 222333311111 112456899999999988888887777653
No 259
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=44.50 E-value=96 Score=20.86 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=38.9
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCH----HHHHHHHhh
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADP----SVVDKVIED 82 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~----~~a~~al~~ 82 (367)
|+.|.+|.- ......|++.+...-.|.++.+-.... .+-|+|... +++.++|++
T Consensus 1 t~~v~~m~C----~~C~~~v~~~l~~~~GV~~v~vd~~~~------~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTC----EGCAKKVEKALSKLPGVKSVKVDLETK------TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTS----HHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCccc----HHHHHHHHHHHhcCCCCcEEEEECCCC------EEEEEEecCCCCHHHHHHHHHH
Confidence 466777777 778888999999988888888765543 677888744 455555553
No 260
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=44.01 E-value=2.2e+02 Score=24.77 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhh-ccCCceeEEEEeeCCCCCC
Q 017735 71 ADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFF-MQFGDVQEHQIMRDHSTSR 149 (367)
Q Consensus 71 ~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f-~~~G~v~~v~i~~~~~~g~ 149 (367)
.+++.++...+|...+.-..|+|............. +...+||+.= .+.++|.+.+ +..-+
T Consensus 66 ~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg---~~i~~ile~~~~~l~~-------------- 127 (187)
T COG2242 66 RDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG---GNIEEILEAAWERLKP-------------- 127 (187)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC---CCHHHHHHHHHHHcCc--------------
Confidence 344444444446666777777777766555544333 6788999876 3334443333 21111
Q ss_pred cccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 150 SRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 150 ~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
-+--.+.+.+.|.+.+|++.|...-+. ..++|..++.+
T Consensus 128 -ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~ 165 (187)
T COG2242 128 -GGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGK 165 (187)
T ss_pred -CCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecce
Confidence 122344555666666666665544443 55555555443
No 261
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.49 E-value=2.1e+02 Score=24.48 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=29.7
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 160 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~ 160 (367)
...++|.-....+.-|++..+++++..-++|.+.-+. -+|.|.+
T Consensus 99 ~~~~~v~f~~ep~dvd~v~~l~~~~~~~eev~~~g~~--------L~v~f~~ 142 (178)
T COG3797 99 PARVCVRFYREPLDVDEVEALADKAGGDEEVLAVGDD--------LWVDFSD 142 (178)
T ss_pred cceEEEEEEcCCCcHHHHHHHHHHhCCCceEEecCCe--------eEEEecC
Confidence 4556666666667778888888888777777665542 4566655
No 262
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=42.55 E-value=19 Score=32.12 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=30.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEE
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ 140 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~ 140 (367)
+...+..+||+-|||..++++.|+++.++++-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3445678999999999999999999999888665543
No 263
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.25 E-value=2.6e+02 Score=26.71 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=20.0
Q ss_pred EEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 156 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 156 V~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
||-...+++..|++.|..-++..|- .|+.+.
T Consensus 326 IE~v~~~~v~~a~erm~kgdV~yRf-VvD~s~ 356 (360)
T KOG0023|consen 326 IELVKLSEVNEAYERMEKGDVRYRF-VVDVSK 356 (360)
T ss_pred eEEEehhHHHHHHHHHHhcCeeEEE-EEEccc
Confidence 3333445678888888877877765 455443
No 264
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=41.23 E-value=86 Score=31.33 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=25.6
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEe
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~ 142 (367)
..-++++.+| ....++|+.+|++.|--....+.
T Consensus 194 ~~vnl~G~~~-~~~~~~i~~lL~~lGI~v~~~lp 226 (457)
T CHL00073 194 PPLVLFGSLP-STVASQLTLELKRQGIKVSGWLP 226 (457)
T ss_pred CcEEEEEecC-cccHHHHHHHHHHcCCeEeEEeC
Confidence 3677889999 77789999999999855544444
No 265
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.40 E-value=14 Score=35.48 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=51.1
Q ss_pred CcceEEEeCCCCCCCH--------HHHHHhhcc--CCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 017735 108 KTKKIFVGGIPSSVNE--------DEFKDFFMQ--FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te--------~~L~~~f~~--~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~ 169 (367)
..+.+|+.++....+. ++|..+|.. ..++..|...++.....+++..|++|...+.+++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3457788888776544 489999988 6788888888888788889999999999999999984
No 266
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=38.64 E-value=1.8e+02 Score=26.72 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=12.9
Q ss_pred CCCCCCHHHHHHhhccC
Q 017735 117 IPSSVNEDEFKDFFMQF 133 (367)
Q Consensus 117 lp~~~te~~L~~~f~~~ 133 (367)
-...-++++|+++.++.
T Consensus 197 y~y~Y~~~eL~~~a~ki 213 (263)
T COG1801 197 YDYRYNEEELKEWAEKI 213 (263)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 34457999999998864
No 267
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.84 E-value=29 Score=31.66 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=25.1
Q ss_pred CCccEEEEeeCCC------CCCcceEEEEEeCCHHHHHHHHh
Q 017735 46 GEITDSVIMKDRK------TGQPRGFGFVTYADPSVVDKVIE 81 (367)
Q Consensus 46 G~i~~~~i~~~~~------tg~srG~afV~f~~~~~a~~al~ 81 (367)
|..+++.|+++.+ |-.-.|||||.-..+.++..-++
T Consensus 125 Gq~kEv~v~KsedalGlTITDNG~GyAFIKrIkegsvidri~ 166 (334)
T KOG3938|consen 125 GQAKEVEVVKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIE 166 (334)
T ss_pred CcceeEEEEecccccceEEeeCCcceeeeEeecCCchhhhhh
Confidence 5678888888753 23457899999887776655444
No 268
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=37.78 E-value=76 Score=31.22 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=23.9
Q ss_pred CCHHHHHHhhccC----Cce--eEEEEeeCCCCCCcccEEEEEeCCHHHHHHH---HHhcC
Q 017735 121 VNEDEFKDFFMQF----GDV--QEHQIMRDHSTSRSRGFGFITFDTEQAVDDL---LAKGN 172 (367)
Q Consensus 121 ~te~~L~~~f~~~----G~v--~~v~i~~~~~~g~~~G~afV~F~~~~~a~~A---l~~l~ 172 (367)
++-+++.++.+.+ ..+ ....+..|..+ -++|...+++.++++ |++|+
T Consensus 107 ~~a~~v~~~l~~~~~~~~~~l~~~~~v~~d~~~-----n~lvv~~~~~~~~~i~~~i~~lD 162 (418)
T TIGR02515 107 AKASDIAKVLTGDDGGKGSLLSPRGSVTVDPRT-----NTLIVTDIPENLARIRKLIAELD 162 (418)
T ss_pred CcHHHHHHHHhhcccccccccCCCeeEEEECCc-----CeEEEEeCHHHHHHHHHHHHHhC
Confidence 3556666666543 111 12234444433 367777777666555 44554
No 269
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=37.15 E-value=2.2e+02 Score=26.36 Aligned_cols=137 Identities=7% Similarity=0.013 Sum_probs=60.1
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCCC-------c--ceEEEEEeCCHHHHHHHHhhccccC---CeEEEE---eec
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQ-------P--RGFGFVTYADPSVVDKVIEDTHIIN---GKQVEI---KRT 96 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~-------s--rG~afV~f~~~~~a~~al~~~~~i~---g~~i~v---~~~ 96 (367)
..++++|.+.+... -|..+.+.. +. . .--...-|.+.+||+++++++..-+ ...++| ...
T Consensus 62 AL~~~~V~~kL~~V----PVF~itn~~-G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 62 ALPEEEVEEKLAGV----PVFTITNSQ-GEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp ---HHHHHHHHTTS----EEEEEE-TT---B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCCHHHHHHHhcCc----eEEEEECCC-CCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 45688888887763 233333321 11 1 2234456778999999888543221 122222 221
Q ss_pred cCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCce------eEEEEeeC----CCCCCcccEEEEEeCCHHHHHH
Q 017735 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDV------QEHQIMRD----HSTSRSRGFGFITFDTEQAVDD 166 (367)
Q Consensus 97 ~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v------~~v~i~~~----~~~g~~~G~afV~F~~~~~a~~ 166 (367)
...........+...|...=+|....-+.-++++++-+.- .-|.+... -...+...--.-.|-+.++++.
T Consensus 137 ~vY~l~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~ 216 (274)
T PF04278_consen 137 KVYQLAQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQA 216 (274)
T ss_dssp HHHHHHHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHH
T ss_pred HHHHHHHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHH
Confidence 1111101111244556666666665555555554433321 11222222 1111112245567888999999
Q ss_pred HHHhcCC
Q 017735 167 LLAKGNK 173 (367)
Q Consensus 167 Al~~l~g 173 (367)
+++++..
T Consensus 217 ~l~k~~k 223 (274)
T PF04278_consen 217 ALEKAKK 223 (274)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9987643
No 270
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=36.57 E-value=1.3e+02 Score=21.38 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=38.9
Q ss_pred hhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCC
Q 017735 32 EPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIING 88 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g 88 (367)
.-...+|.+.++..+ .|.++.+......+.....--|+..+.++.+..++++..+.+
T Consensus 17 ~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~ 74 (80)
T PF13291_consen 17 PGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPG 74 (80)
T ss_dssp TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTT
T ss_pred CCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Confidence 345778888888876 677777776533344455556677899999999987766654
No 271
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.49 E-value=1.4e+02 Score=25.25 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 116 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 116 ~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
+|+..+.++-|.++.+-+|.|... .+. .-.+.|-+.+.+++||+.+.
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 689999999999999999887665 221 24788999999999998753
No 272
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=35.32 E-value=76 Score=32.38 Aligned_cols=40 Identities=18% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeC
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~ 144 (367)
+-.++.+||+.+|+.++.++.-.++....--++.+.|++.
T Consensus 297 EGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 297 EGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 4556889999999999998887788777767777777753
No 273
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=34.46 E-value=2.6e+02 Score=24.34 Aligned_cols=73 Identities=15% Similarity=0.372 Sum_probs=46.2
Q ss_pred CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-cccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCC----
Q 017735 47 EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSV---- 121 (367)
Q Consensus 47 ~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~---- 121 (367)
.+.-|..++++ +.|.+.++|.+.+++. .......|.+....+. -...+++|||..+.-.+
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~-----VNE~TkkIYICPFTGKVF~DN 100 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPS-----VNEQTKKIYICPFTGKVFGDN 100 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCcc-----cccccceEEEcCCcCccccCC
Confidence 46667777776 5789999999988843 3444455555444332 33456777776554332
Q ss_pred ----CHHHHHHhhccCC
Q 017735 122 ----NEDEFKDFFMQFG 134 (367)
Q Consensus 122 ----te~~L~~~f~~~G 134 (367)
.++.|.+..++|-
T Consensus 101 t~~nPQDAIYDWvSkCP 117 (238)
T PF10915_consen 101 THPNPQDAIYDWVSKCP 117 (238)
T ss_pred CCCChHHHHHHHHhhCC
Confidence 3466788888774
No 274
>KOG4000 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.38 E-value=1.5e+02 Score=26.72 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh
Q 017735 45 YGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE 81 (367)
Q Consensus 45 ~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~ 81 (367)
.-+|+.+.|+.|+ ...++||--|.-...++.++-|-
T Consensus 14 ~~PIT~~~IVad~-nraP~gf~~I~~~~dd~~dADLW 49 (291)
T KOG4000|consen 14 NRPITSLHIVADF-NRAPKGFSAISRTYDDDSDADLW 49 (291)
T ss_pred CCcceeEEEEecc-ccCCCccchheeecccccchhhh
Confidence 3478999999988 47789987443333344444343
No 275
>PRK10905 cell division protein DamX; Validated
Probab=33.62 E-value=71 Score=30.07 Aligned_cols=58 Identities=7% Similarity=0.181 Sum_probs=35.2
Q ss_pred EEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEE--EeCCHHHHHHHHHhcC
Q 017735 113 FVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI--TFDTEQAVDDLLAKGN 172 (367)
Q Consensus 113 ~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV--~F~~~~~a~~Al~~l~ 172 (367)
|+--|.-..+++.|++|..+.+ +....+.....+++.. |-+| .|.+.++|++|+++|-
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 3333334456788888887774 4444444443344322 2222 6899999999999874
No 276
>PF14893 PNMA: PNMA
Probab=33.31 E-value=39 Score=32.17 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhcc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQ 132 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~ 132 (367)
..+.|-|.+||.++++++|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3467899999999999999888753
No 277
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=33.10 E-value=14 Score=30.32 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=29.9
Q ss_pred cEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 152 GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 152 G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
++..+.|.++++++++++. ....+++..|.++...+.
T Consensus 56 ~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPD 92 (153)
T ss_pred CeEEEEEEeccceeEEEec-ccccccccchhhhhhccc
Confidence 4889999999999999876 666778888888776644
No 278
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=32.97 E-value=3.8e+02 Score=27.82 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=27.5
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCC-CcceEEEEEeC
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTG-QPRGFGFVTYA 71 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg-~srG~afV~f~ 71 (367)
.+...+|++.+.++..|.++.++-.+... ...-.|||...
T Consensus 524 rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~ 564 (647)
T PTZ00237 524 KVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLK 564 (647)
T ss_pred EeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEec
Confidence 46778888888888889888777444321 23446788765
No 279
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=32.01 E-value=1.9e+02 Score=26.50 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=26.7
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEee
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~ 143 (367)
.....|+|||+++|..-|..+++..-.+..+.+|.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 45678999999999999999998665554444443
No 280
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=31.99 E-value=2e+02 Score=20.92 Aligned_cols=60 Identities=10% Similarity=0.185 Sum_probs=41.0
Q ss_pred eCCCCCCCHHHHHHh-hccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 115 GGIPSSVNEDEFKDF-FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 115 ~~lp~~~te~~L~~~-f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
-.+|..+.-+||+.- -+.||...++..+.+. -.|-..+.++.++|++.++. ...-+.|++
T Consensus 14 i~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e--------L~iPl~~Q~DLDkAie~ld~-s~~~ksLRi 74 (79)
T cd06405 14 IQFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE--------LLIPLKNQEDLDRAIELLDR-SPHMKSLRI 74 (79)
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeEEEeccc--------EEEeccCHHHHHHHHHHHcc-CccccceeE
Confidence 345666666777544 4678888888776552 57788899999999998765 333344444
No 281
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.75 E-value=1.1e+02 Score=28.82 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhcc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQ 132 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~ 132 (367)
...+|.|++.|..+|++|++++-.+
T Consensus 306 ~MF~lhlG~tp~~LT~~d~~eL~~k 330 (439)
T KOG0739|consen 306 RMFKLHLGDTPHVLTEQDFKELARK 330 (439)
T ss_pred hhheeccCCCccccchhhHHHHHhh
Confidence 4578999999999999999998754
No 282
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=31.61 E-value=1.2e+02 Score=21.47 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=38.7
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCH----HHHHHHHHh
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLAK 170 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~----~~a~~Al~~ 170 (367)
.+|.|.++.=.--...+++..++...|..+.+-.+. +-++|+|++. ++...|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHHHH
Confidence 456666666555667888888888888888887763 3589999883 455555544
No 283
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=31.51 E-value=3.2e+02 Score=23.06 Aligned_cols=125 Identities=12% Similarity=0.176 Sum_probs=65.0
Q ss_pred hHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceE
Q 017735 34 ALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 112 (367)
Q Consensus 34 t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l 112 (367)
...+|..+|...+ +|.++.+......+.++ +.++.-.+.+.+++.++.++++-. -++|..-... +.-.+.|
T Consensus 15 vL~rI~~lf~rrg~NI~Sl~v~~te~~~~sr-iti~V~~~~~~i~qi~kQl~KLid-V~~V~~~~~~------~~v~rEl 86 (161)
T PRK11895 15 VLSRVAGLFSRRGYNIESLTVGPTEDPGLSR-MTIVTSGDEQVIEQITKQLNKLID-VLKVVDLTEE------AHVEREL 86 (161)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeecCCCCEEE-EEEEEECCHHHHHHHHHHHhcccc-EEEEEecCCc------chhheEE
Confidence 6778888899887 67777666543233333 556655677777777775542221 1222221111 1112222
Q ss_pred EEeCCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHHhcCCcc
Q 017735 113 FVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAKGNKLE 175 (367)
Q Consensus 113 ~V~~lp~-~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~-~~~a~~Al~~l~g~~ 175 (367)
-+-.+.. ..+..++.++++.|. .+-|.+-.+ +..||..- ++..++.++.|..+-
T Consensus 87 ~LiKv~~~~~~r~~i~~i~~~f~-a~ivdv~~~--------~~~iE~tG~~~ki~~~~~~l~~~g 142 (161)
T PRK11895 87 ALVKVRASGENRAEILRLADIFR-AKIVDVTPE--------SLTIEVTGDSDKIDAFIDLLRPYG 142 (161)
T ss_pred EEEEEECCcccHHHHHHHHHHhC-CEEEEecCC--------EEEEEEeCCHHHHHHHHHHhhhcC
Confidence 2222222 244677888877763 222233222 56677754 555566666665543
No 284
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=31.32 E-value=93 Score=30.63 Aligned_cols=64 Identities=6% Similarity=0.061 Sum_probs=36.4
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCC----ceeEEEEeeCCCCC--------CcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFG----DVQEHQIMRDHSTS--------RSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G----~v~~v~i~~~~~~g--------~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
..|.+-.=-+-++.+.|++++...- .+.-+....+..++ ..+-.++||.+|+.++++.++.+|.
T Consensus 98 ~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNt 173 (460)
T COG1207 98 DVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINT 173 (460)
T ss_pred cEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEee
Confidence 4555555555678888887765442 22211111111111 1233689999998888888777653
No 285
>COG4869 PduL Propanediol utilization protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.99 E-value=92 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=23.1
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~ 144 (367)
+-+.|..-.-.++++|-..+=-+.+++.+|.|..+
T Consensus 132 kGvIvAkRHIHm~p~dA~~~~Vkq~diVsV~v~~d 166 (210)
T COG4869 132 KGVIVAKRHIHMTPEDAAKYGVKQGDIVSVKVESD 166 (210)
T ss_pred cceEEEeeeccCCHHHHHHhCcccCcEEEEEecCC
Confidence 34555555556777777766667778887776554
No 286
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.94 E-value=1.6e+02 Score=22.15 Aligned_cols=44 Identities=2% Similarity=-0.011 Sum_probs=31.1
Q ss_pred HHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 124 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 124 ~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
+.+++++++.| +|+++.+..-+ ---...+++.|.+.|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHH
Confidence 56777777764 77777776543 3457888999999888776543
No 287
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=30.74 E-value=1.5e+02 Score=28.23 Aligned_cols=29 Identities=7% Similarity=-0.051 Sum_probs=18.9
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCC
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYG 46 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G 46 (367)
..+.+++|+..+-. +---+.|++....-|
T Consensus 78 ~~p~~~~f~GsvG~----Dk~ge~l~~~~~~aG 106 (343)
T KOG2854|consen 78 QQPGATVFFGSVGK----DKFGELLKSKARAAG 106 (343)
T ss_pred cCCCceEEEeeccC----chHHHHHHHHHHhcC
Confidence 33568888887776 555566666665544
No 288
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=30.47 E-value=3.3e+02 Score=22.87 Aligned_cols=124 Identities=11% Similarity=0.173 Sum_probs=62.2
Q ss_pred hHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceE
Q 017735 34 ALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 112 (367)
Q Consensus 34 t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l 112 (367)
....|..+|...+ +|.++.+......+.++ +.++.-.+.+.+++..+.++++-. -++|....+. +.-.+.|
T Consensus 14 vL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sr-iti~V~~d~~~i~qi~kQl~Kli~-V~~V~~~~~~------~~v~rEl 85 (157)
T TIGR00119 14 VLSRVAGLFTRRGFNIESLTVGPTEDPDLSR-MTIVVVGDDKVLEQITKQLNKLVD-VIKVSDLTES------AIVEREL 85 (157)
T ss_pred HHHHHHHHHHhCCceEEEEEEeecCCCCEEE-EEEEEECCHHHHHHHHHHHhcCcc-EEEEEecCCC------cceeeEE
Confidence 6778888899887 67777666554233333 555555566666665554432211 1222221111 1112222
Q ss_pred EEeCCC-CCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHHhcCCc
Q 017735 113 FVGGIP-SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAKGNKL 174 (367)
Q Consensus 113 ~V~~lp-~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~-~~~a~~Al~~l~g~ 174 (367)
.+-.+. ...+..+|.++.+.|. .+-|++-.+ +-.||..- ++..++.++.|..+
T Consensus 86 ~LiKv~~~~~~r~~i~~i~~~f~-a~ivdv~~~--------~~~ie~tG~~~ki~~~~~~l~~~ 140 (157)
T TIGR00119 86 CLVKVSAPGEGRDEIIRLTNIFR-GRIVDVSPD--------SYTVEVTGDSDKIDAFLELLRPF 140 (157)
T ss_pred EEEEEECCccCHHHHHHHHHHhC-CEEEEecCC--------EEEEEEcCCHHHHHHHHHHhhhc
Confidence 222221 2235677888877763 222333222 45667654 55555666666554
No 289
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.39 E-value=45 Score=28.68 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=39.6
Q ss_pred hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCe-EEEEeeccCC
Q 017735 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGK-QVEIKRTIPK 99 (367)
Q Consensus 34 t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~-~i~v~~~~~~ 99 (367)
.....+++|.++-+.....+++.. ...-|.|.+++.|..|...++ .+.++ .++...+++.
T Consensus 28 ~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 28 DKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred HHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 344566778777666655555543 367799999999988876443 66676 5555555443
No 290
>PF11627 HnRNPA1: Nuclear factor hnRNPA1; InterPro: IPR021662 This family of proteins represents hnRNPA1, a nuclear factor that binds to Pol II transcripts. The family of hnRNP proteins are involved in numerous RNA-related activities [].
Probab=30.39 E-value=73 Score=19.62 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 017735 322 GYGGGPSGYDIGLGSSYGGS 341 (367)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~ 341 (367)
.|-.+.+.|++..++++++.
T Consensus 9 nyn~qsSnfGPmKggnfgG~ 28 (37)
T PF11627_consen 9 NYNNQSSNFGPMKGGNFGGG 28 (37)
T ss_pred ccccccCcccccccCCcCCc
Confidence 45556778888887777773
No 291
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=30.38 E-value=2.4e+02 Score=28.80 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=58.0
Q ss_pred cceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEE
Q 017735 62 PRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQI 141 (367)
Q Consensus 62 srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i 141 (367)
.+|-| +.|+++++|.+|+.+...-.+..|.|+..=|+.-+--++ -.. +-......+--.+|-+
T Consensus 382 ~~G~A-~VF~see~a~~ai~~g~i~~gdVvViRyeGPkGgPGMpE-------------ml~---~t~al~g~glg~~VaL 444 (535)
T TIGR00110 382 FEGPA-KVFESEEEALEAILGGKIKEGDVVVIRYEGPKGGPGMPE-------------MLA---PTSAIKGMGLGKSVAL 444 (535)
T ss_pred EEEeE-EEECCHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCChhh-------------hcc---hHHHHHhCCCCCceEE
Confidence 45544 559999999999998776677777777766663221111 000 1111112233344666
Q ss_pred eeC-CCCCCcccEEEEEeCCHHHHHH-HHHhc---CC--cccCCeeeEeee
Q 017735 142 MRD-HSTSRSRGFGFITFDTEQAVDD-LLAKG---NK--LELAGAQVEVKK 185 (367)
Q Consensus 142 ~~~-~~~g~~~G~afV~F~~~~~a~~-Al~~l---~g--~~~~g~~l~v~~ 185 (367)
++| +.++.++|++... .++|+|.- .|..+ +- +++..+.|+|..
T Consensus 445 ITDGRfSGas~G~~igH-VsPEAa~GGpIalv~dGD~I~ID~~~r~l~l~v 494 (535)
T TIGR00110 445 ITDGRFSGGTRGLCIGH-VSPEAAEGGPIALVEDGDIIIIDIPNRKLDLQV 494 (535)
T ss_pred eccCccCCcCCCCEEEE-EChhhhcCCcEEEEeCCCEEEEECCCCEEEEec
Confidence 665 6677888855444 45555532 22221 22 234567777753
No 292
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=30.15 E-value=37 Score=29.07 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=36.6
Q ss_pred hhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 11 MFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 11 ~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
.+.++.++.|.+.+-..+...++++++|+++...-. ..-...+.+...-+|+-|.|-+.+.+.+-|++
T Consensus 44 aFNSQssR~ViL~gd~h~KlWdivk~~l~~ivp~~~----f~~t~~ki~~f~ag~GtVLFfeDq~Vv~~LQe 111 (200)
T COG3560 44 AFNSQSSRVVILFGDEHDKLWDIVKDELRAIVPAEA----FEATERKIDSFKAGYGTVLFFEDQNVVKGLQE 111 (200)
T ss_pred ccccCCceEEEEeccchHHHHHHHHHHHHHhccccc----ccccccccchhhhccceEEEEecchHHHHHHH
Confidence 333444555555555444555677777777665421 11112222333456777777766666666653
No 293
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=86 Score=26.79 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=37.1
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccC-CceeEEEEeeCCCCCCcccE-EEEEeCCHH---HHHHHHHhcCCcccCCeeeEee
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGF-GFITFDTEQ---AVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~-G~v~~v~i~~~~~~g~~~G~-afV~F~~~~---~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
..|.|.-=|..++-++|.++|-+. .+-..-+--.|+-+. | .-|-+.+++ .|++.++++.......++|.++
T Consensus 58 E~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~Gtq----YRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~Ivte 133 (174)
T COG0225 58 EAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRGTQ----YRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTE 133 (174)
T ss_pred EEEEEEeCCccccHHHHHHHHheecCCCCCCccCCccccc----ceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 345555566778888888877433 221111111222111 2 224444444 4444555665545556666666
Q ss_pred ecCC
Q 017735 185 KAEP 188 (367)
Q Consensus 185 ~a~~ 188 (367)
...-
T Consensus 134 I~p~ 137 (174)
T COG0225 134 IEPA 137 (174)
T ss_pred eecc
Confidence 5443
No 294
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.43 E-value=35 Score=20.99 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=10.2
Q ss_pred CCCCHHHHHHhhccCC
Q 017735 119 SSVNEDEFKDFFMQFG 134 (367)
Q Consensus 119 ~~~te~~L~~~f~~~G 134 (367)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998653
No 295
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=29.25 E-value=4.5e+02 Score=25.17 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=61.4
Q ss_pred cccccceEe---ccCCCCCCchhhHHHHHHhhccCCCc---cEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcccc-
Q 017735 14 NRQTTTQKM---TGLSLTPVTEPALAQFIKHFGKYGEI---TDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHII- 86 (367)
Q Consensus 14 ~~~~~~~~v---~~L~~~~~~~~t~~~l~~~F~~~G~i---~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i- 86 (367)
.+.+.++.+ .+.++.++-|....-+..++++||.. .+++|.+.- =.++|=+-|.|..+. + +.++.....
T Consensus 106 ~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rrG--~yP~GgG~V~~~~~~-~-~~l~~i~l~~ 181 (341)
T cd00875 106 GKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRG--VAPGGGGEVGFRCPV-R-KPLTPHLNDS 181 (341)
T ss_pred CCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEecc--CCCCCCEEEEEEecC-c-ccccceeecc
Confidence 334444443 45666566666666677778888863 455555432 235555666665321 0 111111111
Q ss_pred CCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHH---HhhccCCceeEEEEee--CCCCCCcccEEEEE
Q 017735 87 NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQIMR--DHSTSRSRGFGFIT 157 (367)
Q Consensus 87 ~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~---~~f~~~G~v~~v~i~~--~~~~g~~~G~afV~ 157 (367)
.++..+| .-..|+.+||..+.+.+++ +++.++.+-.+|.+.. ....+.+.|++.+.
T Consensus 182 ~G~i~~i---------------rG~~~~~~l~~~va~r~~~~a~~~L~~~~~dv~i~~~~~~~~~~~~~~G~gi~L 242 (341)
T cd00875 182 PGRIKRI---------------RGVAYSTRVSPSIANRMIDAARGVLNPFIPDVYIYTDVRKGDNSGKSPGFGISL 242 (341)
T ss_pred CCceEEE---------------EEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEecccccCCCCCCeEEEE
Confidence 1111111 1256788999888776654 4455544322332221 12244566665443
No 296
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=28.80 E-value=3.1e+02 Score=27.37 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=34.8
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcc---CCceeEEEEeeCCCCCCcccEEE-EEeCCHHHHHHHHH
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQ---FGDVQEHQIMRDHSTSRSRGFGF-ITFDTEQAVDDLLA 169 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~---~G~v~~v~i~~~~~~g~~~G~af-V~F~~~~~a~~Al~ 169 (367)
.++|.|..||..++.++|.+.... -.++..|.=++|..+. .++-| |++.....++..++
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHHH
Confidence 468999999999999888776542 2334344444453332 24555 45555444444444
No 297
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.78 E-value=83 Score=31.75 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=45.6
Q ss_pred EEEeCCCCCCCH---HHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 112 IFVGGIPSSVNE---DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 112 l~V~~lp~~~te---~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
=+|+||+.-... ..|.++-++||+|-.+++-.. -.|.-.+.+.|++|+.+ |...+.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 357787765444 456666779999998887543 36888999999999988 6778888775
No 298
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=28.65 E-value=1.6e+02 Score=28.85 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCCC
Q 017735 117 IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 117 lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
|-..++.++|.+++. |-.-+.|+++.|.- ||--.|+.. .....++-.+...++-..|+|-|+.+|.--.
T Consensus 239 LG~~~~~e~L~~ll~-Fa~~kniHvI~DEI------ya~sVF~~~-~F~Sv~ev~~~~~~~~~rvHivyslSKD~Gl 307 (471)
T KOG0256|consen 239 LGTTLSPEELISLLN-FASRKNIHVISDEI------YAGSVFDKS-EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGL 307 (471)
T ss_pred CCCccCHHHHHHHHH-HHhhcceEEEeehh------hcccccCcc-CceEHHHHhhccccCCCcEEEEEEeccccCC
Confidence 334567788887764 22336777777732 555555554 2222333333444466778888888776443
No 299
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=28.26 E-value=4.1e+02 Score=25.26 Aligned_cols=54 Identities=9% Similarity=-0.091 Sum_probs=27.2
Q ss_pred hHHHHHHhhccCCCccEEEEeeCCC-CCCcceEEEEEeCCHHHHHHHHhhccccCCe
Q 017735 34 ALAQFIKHFGKYGEITDSVIMKDRK-TGQPRGFGFVTYADPSVVDKVIEDTHIINGK 89 (367)
Q Consensus 34 t~~~l~~~F~~~G~i~~~~i~~~~~-tg~srG~afV~f~~~~~a~~al~~~~~i~g~ 89 (367)
...|.+++|..+-. ..+..++-+- .+.+ -..+|+|+.+-+++++.+.+....+-
T Consensus 202 m~~EtrKIl~~l~~-VsaTcVRVPV~~GHs-~sV~ve~e~~~~~e~~~~~l~~~~gv 256 (322)
T PRK06901 202 LELQLQKIFPQLEN-VTFHSIQVPVFYGLA-QMVTALSEYELDIESQLAEWQQNNLL 256 (322)
T ss_pred HHHHHHHHhCCccc-EEEEEEEcceeccEE-EEEEEEECCCCCHHHHHHHHHhCCCc
Confidence 56778888833211 2333333221 1222 24688998766666655543333333
No 300
>PHA00019 IV phage assembly protein
Probab=28.00 E-value=2.4e+02 Score=27.87 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=17.2
Q ss_pred EEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 154 GFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 154 afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
++|.-.+++..+++.+.++..+..-+.|.+
T Consensus 172 ~Liv~~t~~~~~~i~~lI~~lD~~~~QV~I 201 (428)
T PHA00019 172 SLVVSGSASQLPALADFISAIDVPRRQVLI 201 (428)
T ss_pred EEEEEeCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 677777877776665554444444444333
No 301
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=27.96 E-value=36 Score=36.11 Aligned_cols=168 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc
Q 017735 5 LTEILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~ 84 (367)
...+.......+..++.+.+.+ ++...+..++.+.|...-...+++...-. .++....+.+++..
T Consensus 175 ~~~l~~~~~~~~~~s~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~l~~~~~ 239 (728)
T KOG1134|consen 175 QAYLASPKYRPDQSSVLVRNVP--PPDGVSVSVIVRHFFSLNHPVKVRSHQVV-------------YNESKLSKLLSKLK 239 (728)
T ss_pred HHHHhCcCcCccccchhhhccc--CCCCCchhhHHhhhhhccCCceeehhHHH-------------hhHHHHHHHHHHHH
Q ss_pred ccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHH-HHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHH
Q 017735 85 IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEF-KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQA 163 (367)
Q Consensus 85 ~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L-~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~ 163 (367)
.+.-..+............ ..+..+..|+.=.-+.++..|. .+.+.+..+.....-....+. +....|||+|++...
T Consensus 240 k~~~~~l~~~~~~~~~~~~-~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~-~~~~~aFVtf~sr~~ 317 (728)
T KOG1134|consen 240 KLRENKLYKEHKRLKSNPK-KRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEE-KPLPAAFVTFKSRYG 317 (728)
T ss_pred HHhHHHHHHhhhhhccccc-cCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEEEeeHH
Q ss_pred HHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 164 VDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 164 a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
|+.|.+..+........++...+...
T Consensus 318 A~~~aq~~~~~~~~~w~~~~APeP~D 343 (728)
T KOG1134|consen 318 AAVAAQTQQSLNPTKWLTEFAPEPRD 343 (728)
T ss_pred HHHHHHhhhcCCCCceEEEecCCccc
No 302
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=27.65 E-value=43 Score=26.66 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=39.5
Q ss_pred HHhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccC
Q 017735 8 ILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN 87 (367)
Q Consensus 8 ~~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~ 87 (367)
.+.++.++.....++.-+.. ..+.++|.+++++.+.-.+..+.+.-.+-+..+..+.+..+.+.+++.+++. .+-
T Consensus 17 a~~~L~~~gi~~~~~~y~~~----~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~~-~Li 91 (117)
T COG1393 17 ALAWLEEHGIEYTFIDYLKT----PPSREELKKILSKLGDGVEELINTRGTTYRELNLDKEDLSDEELIEALLENP-SLI 91 (117)
T ss_pred HHHHHHHcCCCcEEEEeecC----CCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCcccccChHHHHHHHHhCh-hhc
Confidence 34444444444444444433 5677888888888763211111111111122233445556666666666655 454
Q ss_pred CeEEEE
Q 017735 88 GKQVEI 93 (367)
Q Consensus 88 g~~i~v 93 (367)
.++|.|
T Consensus 92 kRPivv 97 (117)
T COG1393 92 KRPIVV 97 (117)
T ss_pred cCCeEE
Confidence 555554
No 303
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=27.55 E-value=1.8e+02 Score=21.62 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=30.6
Q ss_pred hhhHHHHHHhhccCC--CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh
Q 017735 32 EPALAQFIKHFGKYG--EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE 81 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G--~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~ 81 (367)
+++..+|++.++.+- .|.+|..+..+. ..--|||++...++|.....
T Consensus 31 ~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 31 RATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 556666666666542 566666665542 22259999999888887654
No 304
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.13 E-value=2.1e+02 Score=19.52 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=29.0
Q ss_pred CHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 122 NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 122 te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
.-.+|-++|.+.+ .|..+.+..... +.+.-|.+++.+.|.++|++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH
Confidence 3456777776654 677776654321 35556667787788888876
No 305
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=27.09 E-value=1.1e+02 Score=28.71 Aligned_cols=69 Identities=3% Similarity=0.041 Sum_probs=43.1
Q ss_pred eEEEEEeCCHHHHHHH-HhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEe
Q 017735 64 GFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142 (367)
Q Consensus 64 G~afV~f~~~~~a~~a-l~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~ 142 (367)
-++..+|.+.++|.+. +.+.....-+..-+-.+- .....+|-+.|++|.++.+.+++.+. +..+.|+
T Consensus 35 ~~~~~dypsle~av~~yl~~~~~~~~~~a~~AiAg--------Pv~gd~v~lTN~~W~~s~~~~r~~Lg----l~~v~li 102 (320)
T COG0837 35 TYACADYPSLEEAVQDYLSEHTAVAPRSACFAIAG--------PIDGDEVRLTNHDWVFSIARMRAELG----LDHLSLI 102 (320)
T ss_pred eecccCcCCHHHHHHHHHHHhhccCccceEEEEec--------CccCCEEeeecCcccccHHHHHHhcC----CCcEEEe
Confidence 4677888888876654 333211111222222222 22445899999999999999988764 6677777
Q ss_pred eC
Q 017735 143 RD 144 (367)
Q Consensus 143 ~~ 144 (367)
.|
T Consensus 103 ND 104 (320)
T COG0837 103 ND 104 (320)
T ss_pred ch
Confidence 66
No 306
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.95 E-value=72 Score=22.18 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=24.7
Q ss_pred EEeCCHHHHHHHHhhccccCCeEEEEeeccC
Q 017735 68 VTYADPSVVDKVIEDTHIINGKQVEIKRTIP 98 (367)
Q Consensus 68 V~f~~~~~a~~al~~~~~i~g~~i~v~~~~~ 98 (367)
.+|.+.++++.||..........+.+..+.+
T Consensus 8 ~~F~~~~e~k~av~~yai~~~~~~~v~ksd~ 38 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREYAIKNGFEFKVKKSDK 38 (67)
T ss_pred CEECCHHHHHHHHHHHHHhcCcEEEEeccCC
Confidence 4789999999999977777778887766643
No 307
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.87 E-value=1.3e+02 Score=24.85 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=34.1
Q ss_pred EEEeCCCCCCCHHHHHHhhccCC--ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 017735 112 IFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~~~G--~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~ 169 (367)
-|+--++..++..+|++.+++.= .|..|..+..+. + .--|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 34445667788899998888743 455555554322 1 2259999977666544433
No 308
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=26.86 E-value=4e+02 Score=25.42 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=27.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCc-eeEEEEeeCCC----CCCcccEEEEEe
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHS----TSRSRGFGFITF 158 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~-v~~v~i~~~~~----~g~~~G~afV~F 158 (367)
..+..+||..+.+.+++..-+.+.. +.+|++..+.. .+.+.|++.+.+
T Consensus 192 ~~~~~~l~~~va~R~~~~a~~~l~~~~~dv~i~~~~~~~~~~~~s~G~gi~L~ 244 (338)
T cd00295 192 IAAGTRVPPAFAEREIASAAGSFNLFEPDIFILPDDQRGDECGNGPGNSISLE 244 (338)
T ss_pred EEEEccCCHHHHHHHHHHHHHHhcccCCceEEEEeccccccCCCCCCeEEEEE
Confidence 4567789988887776544332221 33455554432 456677765444
No 309
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=26.86 E-value=3.7e+02 Score=25.67 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=64.9
Q ss_pred hccccccceEecc---CCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccC-
Q 017735 12 FINRQTTTQKMTG---LSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN- 87 (367)
Q Consensus 12 ~~~~~~~~~~v~~---L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~- 87 (367)
+..+.+.++.|+. .++.++-|.-..-...++++.+.-.++++++.=. -++|=+-|.|.-+....+.. ++.++
T Consensus 108 ~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l~vlkRG~--yP~GGGeV~~~V~p~~~~~~--l~l~e~ 183 (341)
T COG0430 108 LFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECELEVLKRGF--YPRGGGEVLLTVEPPKEKLP--LHLTER 183 (341)
T ss_pred hcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEEEEEeccc--CCCCCcEEEEEEcCccccCc--eeeecc
Confidence 3444555555543 3344455555555666677777666777776422 34444444444322221110 11111
Q ss_pred CeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHH---HHhhccCCceeEEEEeeCCCCCCcccEEEEEeC
Q 017735 88 GKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEF---KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 159 (367)
Q Consensus 88 g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L---~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~ 159 (367)
++.++| .-..+..|||..+.|.++ ++++.+.+.-.+|.+...+. ..+.|++++.+.
T Consensus 184 g~i~~v---------------~Gia~~~~lp~hvAeRqa~~A~~~L~~~~~~v~i~~~~~~~-~~spG~gI~L~a 242 (341)
T COG0430 184 GEIEKV---------------RGIAHSTNLPPHVAERQAEAAKELLGKLGLEVEIYTEVRRG-GLSPGSGIVLWA 242 (341)
T ss_pred cceeEE---------------EEEEEeccCCcHHHHHHHHHHHHHhhhccCCceEEEeeccc-CCCCCceEEEEE
Confidence 111111 124567899999988766 45566555444554443321 246777776664
No 310
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.80 E-value=56 Score=29.92 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=30.0
Q ss_pred ccccceEeccCCCCCC-------ch-hhHHHHHHhhccCCCccEEEEe
Q 017735 15 RQTTTQKMTGLSLTPV-------TE-PALAQFIKHFGKYGEITDSVIM 54 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~-------~~-~t~~~l~~~F~~~G~i~~~~i~ 54 (367)
..+.||++..||..+. .+ .+++.|+..|+.||+|..|.|.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4467899999887531 12 4678899999999999877664
No 311
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=26.70 E-value=50 Score=35.00 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.5
Q ss_pred ccEEEEEeCCHHHHHHHHHh
Q 017735 151 RGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 151 ~G~afV~F~~~~~a~~Al~~ 170 (367)
...+||+|++...|+.|.+.
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~ 376 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQS 376 (827)
T ss_pred cccEEEEEehhHHHHHHHHh
Confidence 45799999999999999876
No 312
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=26.66 E-value=63 Score=33.58 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=54.9
Q ss_pred hhHHHHHHhhccCCCccEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEeeccCCCCCCCCCCCcc
Q 017735 33 PALAQFIKHFGKYGEITDSVIMKDRKT-GQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTK 110 (367)
Q Consensus 33 ~t~~~l~~~F~~~G~i~~~~i~~~~~t-g~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~ 110 (367)
+...||++.+..+..|.++-++-.++. +-..-+|||.+.+.+.....|. ++.. .| +.....-..+.+
T Consensus 508 igtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~----~V-------R~~igp~a~P~~ 576 (626)
T KOG1175|consen 508 IGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVK----HV-------RSVIGPYAVPRL 576 (626)
T ss_pred ecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHH----HH-------HhhcCcccccce
Confidence 466778888888889988888765432 2344588999876543333333 1110 00 011122334567
Q ss_pred eEEEeCCCCCCCHHHHHHhhcc
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQ 132 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~ 132 (367)
.++|.+||...+-..++.+..+
T Consensus 577 I~~v~~LPkTrSGKimRr~lrk 598 (626)
T KOG1175|consen 577 IVFVPGLPKTRSGKIMRRALRK 598 (626)
T ss_pred eEecCCCCccccchhHHHHHHH
Confidence 8899999999887776666654
No 313
>PRK00766 hypothetical protein; Provisional
Probab=26.60 E-value=1.5e+02 Score=25.99 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=7.3
Q ss_pred eCCHHHHHHHHh
Q 017735 70 YADPSVVDKVIE 81 (367)
Q Consensus 70 f~~~~~a~~al~ 81 (367)
|.+.+..+.||+
T Consensus 108 ~p~~~~ie~AL~ 119 (194)
T PRK00766 108 KPDFEAIESALK 119 (194)
T ss_pred CCCHHHHHHHHH
Confidence 455666666665
No 314
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.40 E-value=2.1e+02 Score=23.85 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHhhc
Q 017735 116 GIPSSVNEDEFKDFFM 131 (367)
Q Consensus 116 ~lp~~~te~~L~~~f~ 131 (367)
.||...+.++|+++|+
T Consensus 129 Dlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 129 DLPDAMKPQEIQDKLE 144 (180)
T ss_pred ccccccCHHHHHHHhc
Confidence 4677788899999996
No 315
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=25.99 E-value=7.9 Score=37.92 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=49.0
Q ss_pred HHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCC
Q 017735 38 FIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGI 117 (367)
Q Consensus 38 l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~l 117 (367)
|-++|+-.-+..---|+.|-..=..+|..|++.+-+++...|+..+.++-. .-+.+.+.-|||++|
T Consensus 37 ICDmfEGhAPyrPRYilPDY~kfl~qGs~fLeL~pp~DldeAln~L~IlY~--------------HVPSVT~~PVylG~L 102 (487)
T PF11230_consen 37 ICDMFEGHAPYRPRYILPDYAKFLKQGSEFLELEPPKDLDEALNNLLILYH--------------HVPSVTSFPVYLGQL 102 (487)
T ss_pred cccccCCCCCCCCceeCccHHHHHhccchhcccCCcccHHHHHHhhhHHhh--------------cCCccCCccceeccH
Confidence 444555554444445555432223568899999999999999886542211 112334556888887
Q ss_pred CC-------CCCHHHHHHhhccC
Q 017735 118 PS-------SVNEDEFKDFFMQF 133 (367)
Q Consensus 118 p~-------~~te~~L~~~f~~~ 133 (367)
.. .++|+++++....|
T Consensus 103 D~lL~Pfv~~l~eee~~~klk~F 125 (487)
T PF11230_consen 103 DRLLEPFVQGLDEEEAYKKLKLF 125 (487)
T ss_pred hhhhcccccCCCHHHHHHHHHHH
Confidence 64 34777776655444
No 316
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.94 E-value=1.1e+02 Score=22.53 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=19.1
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFG 134 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G 134 (367)
.+-+|--|....++++|++.|++.+
T Consensus 49 ~Sy~V~Fl~~~~s~eev~~ele~mg 73 (88)
T COG4009 49 SSYYVVFLEEVESEEEVERELEDMG 73 (88)
T ss_pred eeEEEEEEeccCCHHHHHHHHHHhC
Confidence 3445666778889999999998765
No 317
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=25.35 E-value=81 Score=29.10 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=33.5
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCH
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADP 73 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~ 73 (367)
+.+++.||+. ++-..+|+..+.+.+.+ -+.|.+ +-+.+-||+.|.+.
T Consensus 331 ~di~~~nl~r----d~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSR----DIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCcc----ccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCc
Confidence 4689999999 89999999988875432 233332 23566799999754
No 318
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.33 E-value=72 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=20.3
Q ss_pred EEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 153 FGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
+.+|+|.+..+|.+|-+.|+...+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 67999999999999988776555533
No 319
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.99 E-value=4.4e+02 Score=22.51 Aligned_cols=32 Identities=25% Similarity=0.124 Sum_probs=22.0
Q ss_pred CHHHHHHHHHhcCCcccCCeeeEeeecCCCCC
Q 017735 160 TEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 160 ~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
-++...+|+..++...+..--|.|+.+.++-+
T Consensus 122 peel~~~~~~l~~~~~l~~~gi~vk~ssp~ge 153 (185)
T COG3102 122 PEELNARALALLNDEFLWELGISVKLSSPQGE 153 (185)
T ss_pred hHHHHHHHHhhcchhhcccCceEEEecCCCCc
Confidence 35666777777776666666688887776654
No 320
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.98 E-value=1.6e+02 Score=24.32 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 116 GIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 116 ~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
.|+..+.++-|+++.+-.|.|.... ..| -.+.|-+.+.+.+||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 5788889999999999888877655 222 367889999999999875
No 321
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=24.90 E-value=2.3e+02 Score=27.47 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=10.0
Q ss_pred EEEEEeCCHHHHHHHHh
Q 017735 65 FGFVTYADPSVVDKVIE 81 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~ 81 (367)
...|+|+.+-+++++.+
T Consensus 278 sv~ve~~~~~~~~~i~~ 294 (369)
T PRK06598 278 ALTIKLKKDVPLAEIEE 294 (369)
T ss_pred EEEEEECCCCCHHHHHH
Confidence 45788875554444444
No 322
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.71 E-value=76 Score=23.46 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.1
Q ss_pred cceEEEEEeCCHHHHHHHHhhcc
Q 017735 62 PRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 62 srG~afV~f~~~~~a~~al~~~~ 84 (367)
.+||-|||-.+++++..|++...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~ 65 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIR 65 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-T
T ss_pred CceEEEEEeCCHHHHHHHHhccc
Confidence 67999999999999999999654
No 323
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=24.45 E-value=1.1e+02 Score=22.97 Aligned_cols=48 Identities=19% Similarity=0.370 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCCccE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 35 LAQFIKHFGKYGEITD--------SVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 35 ~~~l~~~F~~~G~i~~--------~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
.-+++-+++.||.-.. +.|+....-.--||+.-|+|..+++.+..++.
T Consensus 33 ~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~er 88 (91)
T PF13037_consen 33 HTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIER 88 (91)
T ss_pred ceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHH
Confidence 3345666777775333 22222211112467888999999999988874
No 324
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.35 E-value=1.2e+02 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceeEEEEeeCCCCCCcccEEEEEeCC
Q 017735 135 DVQEHQIMRDHSTSRSRGFGFITFDT 160 (367)
Q Consensus 135 ~v~~v~i~~~~~~g~~~G~afV~F~~ 160 (367)
+|.+|+|..-...++.+++|-|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788887766668899999999976
No 325
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=24.35 E-value=6.2e+02 Score=24.04 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=63.1
Q ss_pred cccccceEec---cCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccC-Ce
Q 017735 14 NRQTTTQKMT---GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN-GK 89 (367)
Q Consensus 14 ~~~~~~~~v~---~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~-g~ 89 (367)
.+.+.++.+. +.++.++.+....-+..+++++|...+++|.+.=- .++|=+-|+|.-+-.. .++..+.++ ++
T Consensus 108 ~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GGGeV~~~i~p~~--~l~~i~l~~~G~ 183 (326)
T TIGR03399 108 ANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGF--YPRGGGEVRLRVEPVK--KLKPLELEERGE 183 (326)
T ss_pred CCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEcccc--CCCceeeecCCc
Confidence 3444555544 45554555666666667788888767777765421 3444455555432210 111111000 11
Q ss_pred EEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHH---HHhhccCCceeEEEEeeCCCCCCcccEEEEEe
Q 017735 90 QVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEF---KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 158 (367)
Q Consensus 90 ~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L---~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F 158 (367)
..+| .-..++.+||..+.+.++ ++++.++.+...+.+... ....+.|++++.+
T Consensus 184 i~~i---------------~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~-~~~~s~G~~i~L~ 239 (326)
T TIGR03399 184 LLRV---------------SGIAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVL-DKGLGPGSGIVLW 239 (326)
T ss_pred eEEE---------------EEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEec-cCCCCCcEEEEEE
Confidence 1111 125677889988877654 344555544334443332 3556677766544
No 326
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=24.34 E-value=5.9e+02 Score=23.84 Aligned_cols=45 Identities=7% Similarity=-0.033 Sum_probs=26.8
Q ss_pred HHHHhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEe
Q 017735 6 TEILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIM 54 (367)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~ 54 (367)
....+.+.++...++++..-+. +...+.+++..+.+..|++++++
T Consensus 49 ~~~a~~~~~~v~i~vyL~~~~~----~~~~~~v~~~i~~~~gV~~v~~~ 93 (297)
T COG2177 49 NSLATQWESQVEITVYLQIDAD----QDDAALVREKIEGIPGVKSVRFI 93 (297)
T ss_pred HHHHHhhhccceEEEEEecCCC----hHHHHHHHHHHhcCCCcceEEEe
Confidence 3344555556666777765544 55556677777776666654443
No 327
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=24.19 E-value=66 Score=24.62 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.5
Q ss_pred ccEEEEEeCCHHHHHHHHHhc
Q 017735 151 RGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 151 ~G~afV~F~~~~~a~~Al~~l 171 (367)
--|+.++|.+.++.++|..++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 448999999999999988763
No 328
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.79 E-value=1.2e+02 Score=23.21 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred ceeEEEEeeCCCCCCcccEEEEEeCC
Q 017735 135 DVQEHQIMRDHSTSRSRGFGFITFDT 160 (367)
Q Consensus 135 ~v~~v~i~~~~~~g~~~G~afV~F~~ 160 (367)
+|.+|+|.+-...++.+++|-|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777776655567889999999987
No 329
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=23.76 E-value=3e+02 Score=20.19 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=32.7
Q ss_pred EeCCCCCCCHHHHHHhh-------ccCCceeEEEEeeCCCCCC-cccE---EEEEeCCHHHHHHHH
Q 017735 114 VGGIPSSVNEDEFKDFF-------MQFGDVQEHQIMRDHSTSR-SRGF---GFITFDTEQAVDDLL 168 (367)
Q Consensus 114 V~~lp~~~te~~L~~~f-------~~~G~v~~v~i~~~~~~g~-~~G~---afV~F~~~~~a~~Al 168 (367)
+-.|...++++++.++. .+.-.|+.+.+-++..... .++| .+++|++.++.++-+
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 34466677777765443 3456677777766533322 2333 457999998886644
No 330
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=23.59 E-value=2e+02 Score=26.51 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=13.8
Q ss_pred HHHHHhhccCCceeEEE
Q 017735 124 DEFKDFFMQFGDVQEHQ 140 (367)
Q Consensus 124 ~~L~~~f~~~G~v~~v~ 140 (367)
+.+.++|+.+|.+..|.
T Consensus 142 ~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 142 AFVEALLSAVGKVVEVE 158 (266)
T ss_pred HHHHHHHHhcCCeEEec
Confidence 45688999999988875
No 331
>PRK11901 hypothetical protein; Reviewed
Probab=23.55 E-value=1.3e+02 Score=28.39 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=31.6
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCCCcc-eEEEEEeCCHHHHHHHHhhc
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPR-GFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~sr-G~afV~f~~~~~a~~al~~~ 83 (367)
...++.|..+.+++. +.+++|.+....++.- -.-+=+|.+.++|++|++.+
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhC
Confidence 445666777666663 5667777655444332 11223578999999999865
No 332
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.50 E-value=91 Score=21.88 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=25.0
Q ss_pred hhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEE
Q 017735 33 PALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFV 68 (367)
Q Consensus 33 ~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV 68 (367)
..+.+|.++|-+..+|+++.|+..+.- -+|-+||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 456678888988889999999987643 4455555
No 333
>KOG4066 consensus Cell growth regulatory protein CGR11 [Function unknown]
Probab=23.45 E-value=1.3e+02 Score=25.23 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=11.4
Q ss_pred CCCCCCCHHHHHHhhc
Q 017735 116 GIPSSVNEDEFKDFFM 131 (367)
Q Consensus 116 ~lp~~~te~~L~~~f~ 131 (367)
+||.-++...|++.+.
T Consensus 137 ~Lpkf~d~~~iKKvyk 152 (177)
T KOG4066|consen 137 ELPKFIDFKVIKKVYK 152 (177)
T ss_pred hhHhhhhHHHHHHHHh
Confidence 4677777788877763
No 334
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=23.28 E-value=93 Score=31.07 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=28.9
Q ss_pred CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 121 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 121 ~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
+.|++|.+-|+-+-.-....... -..++|=+.|.++++|++.++++.
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFe-----gddc~aGLnF~~E~EA~~F~k~V~ 136 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFE-----GDDCQAGLNFASEEEAQKFRKKVQ 136 (569)
T ss_pred eehHHhhhhceeccCccceeeec-----cccceeeecccCHHHHHHHHHHHH
Confidence 45678877776443221111111 124578889999999999887654
No 335
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.12 E-value=1.4e+02 Score=21.92 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=21.8
Q ss_pred cccEEEEEeCCHHHHHHHHHhcCCcc
Q 017735 150 SRGFGFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 150 ~~G~afV~F~~~~~a~~Al~~l~g~~ 175 (367)
.+||-|||=.+++++.+|++.+....
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999998765543
No 336
>PRK12338 hypothetical protein; Provisional
Probab=22.74 E-value=4.1e+02 Score=25.18 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=62.1
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-cccCCeEEEEeec
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRT 96 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-~~i~g~~i~v~~~ 96 (367)
....+.|... +.|.+.+.+.+.++ ++++ +.-.+.++.++-++.. -+..++.+.|.
T Consensus 182 ~VpvI~N~di----d~Tv~~ile~I~e~-----s~~i-------------~~~H~~~~~~~El~~I~vd~Gg~v~dV~-- 237 (319)
T PRK12338 182 NVPVIKNDDI----DCTVKKMLSYIREV-----CVTV-------------TLQHSVDDLDEVIEIIIKRHGGRITDIS-- 237 (319)
T ss_pred CCceeCCCcH----HHHHHHHHHHHHhh-----eEEE-------------EEeCCHHHHHHHHHeEEecCCCEEEEec--
Confidence 3444667766 77777777776653 1222 1223556666666644 44456655555
Q ss_pred cCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCcee----EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ----EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 97 ~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~----~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
.+..-.++.-...|.| .+.+|+++|.++.-.-. +...+..-.++ --+=.|+..++++.++++++|.
T Consensus 238 --h~iyG~~~~i~~~l~i------~s~~dv~~Fi~~~~~~~~~~~~~~~L~~lT~g--vH~Hti~a~~~e~l~~i~~~L~ 307 (319)
T PRK12338 238 --YPIPGFKDPLKREVNV------SDPDEAEKFIKRLNENPKKKEDLKRLYSLSNN--VHSHRICAPDEESLNRIIEELE 307 (319)
T ss_pred --ccCCCCCceeEEEEcc------CCHHHHHHHHHHHhhCCccccchhhHHHHhCC--eeEEEEEeCCHHHHHHHHHHHH
Confidence 1111111122233332 35577777776431111 12222221111 1134688889999988888774
Q ss_pred C
Q 017735 173 K 173 (367)
Q Consensus 173 g 173 (367)
.
T Consensus 308 ~ 308 (319)
T PRK12338 308 E 308 (319)
T ss_pred H
Confidence 3
No 337
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.43 E-value=80 Score=31.80 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=32.4
Q ss_pred ccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 151 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 151 ~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
..+|+++|++++.+.+|+..+++.......+++..+...
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 458999999999999999999998888777777655544
No 338
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=22.35 E-value=1.4e+02 Score=28.69 Aligned_cols=52 Identities=8% Similarity=0.039 Sum_probs=34.2
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHH
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK 78 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~ 78 (367)
+...++|.|-.-..-+-++.++|+++.+.... .+.|+.| -||++|.. +++..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD--------EAY~eF~~-~~~~~ 196 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID--------EAYIEFSP-ESSLE 196 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe--------CchhhcCC-chhhh
Confidence 45566666554434445678899999888766 4555556 48999999 43333
No 339
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.20 E-value=2.6e+02 Score=19.52 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=29.5
Q ss_pred hhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCC---HHHHHHHHhhc
Q 017735 33 PALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYAD---PSVVDKVIEDT 83 (367)
Q Consensus 33 ~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~---~~~a~~al~~~ 83 (367)
-+..++.+.|++++ +|.++.-...+ .....=.-||+++. ....+++++.+
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l 64 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEEL 64 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHH
Confidence 45788889999885 45554333222 12333456788874 45566666644
No 340
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=22.07 E-value=4.4e+02 Score=25.22 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=18.9
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCC
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYG 46 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G 46 (367)
+.+..+++.|+. .+....|.+.|.+-+
T Consensus 92 q~S~Ii~lRnfN-----NwIKs~LI~~y~~~~ 118 (389)
T KOG1975|consen 92 QRSPIIFLRNFN-----NWIKSVLINLYTKRG 118 (389)
T ss_pred ccCceeehhhhh-----HHHHHHHHHHHhccc
Confidence 345678888887 567777777777643
No 341
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=21.83 E-value=2e+02 Score=26.20 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=32.7
Q ss_pred HHHHHHHhhccccCCeEEEEeeccCCCCCCCC-CCCcceEEEeCCCCCCCHHHHHHhhc
Q 017735 74 SVVDKVIEDTHIINGKQVEIKRTIPKGAVGSK-DFKTKKIFVGGIPSSVNEDEFKDFFM 131 (367)
Q Consensus 74 ~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~-~~~~~~l~V~~lp~~~te~~L~~~f~ 131 (367)
.+..+.+++... ....+++............ ......++|+|||+.++.+-|.+++.
T Consensus 62 ~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 62 PDLAKHLKERFA-SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp HHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred HhHHHHHHHHhh-hcccceeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 344444443222 2344555444333222221 23456789999999999999999886
No 342
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.75 E-value=6.6e+02 Score=23.39 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=20.3
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~ 83 (367)
.+-.+...+.++++|-. +.+++-+ +..++++..++++++
T Consensus 48 ~~Yv~~k~k~~~~~Gi~--~~~~~l~-----------~~~s~~el~~~I~~l 86 (284)
T PRK14177 48 ETYVSMKVKACHKVGMG--SEMIRLK-----------EQTTTEELLGVIDKL 86 (284)
T ss_pred HHHHHHHHHHHHHcCCE--EEEEECC-----------CCCCHHHHHHHHHHH
Confidence 34455556677777622 2222211 124667777777754
No 343
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=21.75 E-value=4e+02 Score=20.90 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=23.9
Q ss_pred ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHH
Q 017735 48 ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI 80 (367)
Q Consensus 48 i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al 80 (367)
|.+|+|.+++. -..+.|...|+++...++..
T Consensus 12 ip~VrLtRsrd--g~~g~a~f~F~~p~al~~~~ 42 (109)
T TIGR03047 12 IPDVRLTRSRD--GGTGTALFRFENPKALDKFN 42 (109)
T ss_pred CCceEEEEccC--CCceEEEEEECCchhhhhcc
Confidence 67899999874 25678999999988766543
No 344
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.64 E-value=2.4e+02 Score=18.31 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=30.2
Q ss_pred hHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh
Q 017735 34 ALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE 81 (367)
Q Consensus 34 t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~ 81 (367)
...++.+.|.+.+ +|..+.+.... ..+....+++++.+.|.++++
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l~ 56 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVLK 56 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHhC
Confidence 4556667777765 56666655432 345677888889888887763
No 345
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.56 E-value=1.2e+02 Score=30.96 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHhhccC----CceeEEEEeeC
Q 017735 106 DFKTKKIFVGGIPSS-VNEDEFKDFFMQF----GDVQEHQIMRD 144 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~-~te~~L~~~f~~~----G~v~~v~i~~~ 144 (367)
...+++|-|-|+.|. +...||.-+|..| |.|.+|.|.+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 456789999999998 7888998888765 58999998764
No 346
>PRK10905 cell division protein DamX; Validated
Probab=21.54 E-value=1.6e+02 Score=27.74 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=35.8
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcc-eEEEEEeCCHHHHHHHHhhc
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPR-GFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~sr-G~afV~f~~~~~a~~al~~~ 83 (367)
.+...|+..|.. -.+++.|.++..+++ +....+.....+++.. -.-+=.|.+.++|++|++.+
T Consensus 243 apa~~YTLQL~A----~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakL 306 (328)
T PRK10905 243 APSSHYTLQLSS----SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTL 306 (328)
T ss_pred CCCCceEEEEEe----cCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHC
Confidence 334444444444 445666767666663 4444455444334322 11233578999999999865
No 347
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=21.40 E-value=32 Score=24.41 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=24.1
Q ss_pred HHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 124 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 124 ~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
++|.+.|+.+....++. +=.+|..|++.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v----------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh----------hhhhccCCCCHHHHHHHHHHh
Confidence 56666665543333221 115899999999888877654
No 348
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.33 E-value=3e+02 Score=20.05 Aligned_cols=47 Identities=6% Similarity=0.114 Sum_probs=30.2
Q ss_pred hhhHHHHHHhhccCC--CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh
Q 017735 32 EPALAQFIKHFGKYG--EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE 81 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G--~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~ 81 (367)
+++..+|++.++++- .|.+|..+.-+. ..--|||++...++|.....
T Consensus 24 ~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 24 KATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 667777777666643 556666655442 12259999988887776544
No 349
>PHA01632 hypothetical protein
Probab=21.31 E-value=74 Score=21.56 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=16.8
Q ss_pred EEEeCCCCCCCHHHHHHhhcc
Q 017735 112 IFVGGIPSSVNEDEFKDFFMQ 132 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~~ 132 (367)
|.|..+|...||++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345788999999999988754
No 350
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=21.19 E-value=3.1e+02 Score=19.46 Aligned_cols=54 Identities=9% Similarity=0.293 Sum_probs=33.1
Q ss_pred EEeCCCCCCCHHHHHHhhc-cCCce-eEEEEee-CCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 113 FVGGIPSSVNEDEFKDFFM-QFGDV-QEHQIMR-DHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 113 ~V~~lp~~~te~~L~~~f~-~~G~v-~~v~i~~-~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
+.-.+|..++-++|.+... +|... ..+.|.- |. .+ -+|+..+.++...|++...
T Consensus 13 ~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De-dg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 13 RRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE-DG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC-CC-----CEEEecCHHHHHHHHHHHH
Confidence 3444667888888876653 34321 1333322 32 21 3899999999999998653
No 351
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=2.7e+02 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 017735 123 EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 169 (367)
Q Consensus 123 e~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~ 169 (367)
+.+|.++++++| |..-.|..|..+ ..-|+++++.|.++.-++|.
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHh
Confidence 467778888776 555556555433 35599999996665555543
No 352
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=20.86 E-value=1.5e+02 Score=29.91 Aligned_cols=79 Identities=11% Similarity=0.230 Sum_probs=47.8
Q ss_pred EEEEEeCCHHHHHHHHhhccc---cCCeEE-------------EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHH
Q 017735 65 FGFVTYADPSVVDKVIEDTHI---INGKQV-------------EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKD 128 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~~~~~---i~g~~i-------------~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~ 128 (367)
.||.++.++...+-..+++|. +....+ +......+-+...+-.++..||..+|+..+.++.-.+
T Consensus 270 ~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~~gPRYCPSiEsKilRFp~k~HqiwLEpEGlDs~~iYpqG~S~tlpee~Q~~ 349 (679)
T KOG2311|consen 270 PCYLTHTTPRVHEIVRKNLHENPHVKETTIGPRYCPSIESKILRFPDKSHQIWLEPEGLDSDLIYPQGLSNTLPEELQLQ 349 (679)
T ss_pred ccccccCcHHHHHHHHhhhccCccccccccCCccCCcHHHHHhcCccccceeeecCcCCCCCcccccccccCCCHHHHHH
Confidence 578888888877777776651 111111 1000011112233445677899999999988887777
Q ss_pred hhccCCceeEEEEee
Q 017735 129 FFMQFGDVQEHQIMR 143 (367)
Q Consensus 129 ~f~~~G~v~~v~i~~ 143 (367)
+....--+++|.|+.
T Consensus 350 lir~IpGLEn~~i~q 364 (679)
T KOG2311|consen 350 LIRSIPGLENAEILQ 364 (679)
T ss_pred HHHhccCcccceeec
Confidence 776666677777664
No 353
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=20.82 E-value=7.5e+02 Score=23.69 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=62.5
Q ss_pred ccccceEec---cCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccC-CeE
Q 017735 15 RQTTTQKMT---GLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN-GKQ 90 (367)
Q Consensus 15 ~~~~~~~v~---~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~-g~~ 90 (367)
+.+.++.+. +.++.++.+....-+..++++||--.+++|.+.= -.++|=+-|+|.-.-. .++..+.++ ++.
T Consensus 111 ~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~i~rRG--~yP~GGGeV~~~i~p~---~l~pi~l~e~G~i 185 (343)
T PRK04204 111 DGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIELLRRG--FYPAGGGEVALEVEPS---KLRPLELLERGEL 185 (343)
T ss_pred CCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEEeCC--ccCCCCeEEEEEEccC---CccceeeccCCCc
Confidence 344455544 4555555566666667778888876677776542 1244555666644321 122111111 111
Q ss_pred EEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHh-----hccCCceeEEEEeeCCCCCCcccEEEEEe
Q 017735 91 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDF-----FMQFGDVQEHQIMRDHSTSRSRGFGFITF 158 (367)
Q Consensus 91 i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~-----f~~~G~v~~v~i~~~~~~g~~~G~afV~F 158 (367)
.+| .-..++.+||..+.+.+++.. +..+-+..++.+.. .....+.|++++.+
T Consensus 186 ~~i---------------rg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~-~~~~~s~G~gi~L~ 242 (343)
T PRK04204 186 LRI---------------RGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEE-LSRGLGPGSGIVLW 242 (343)
T ss_pred EEE---------------EEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEee-ccCCCCCceEEEEE
Confidence 111 124677889988877776553 33332223343332 23556677765533
No 354
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=20.70 E-value=86 Score=31.00 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=35.7
Q ss_pred eEEEeCCCCC-CCHHHHHHhhcc----CCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 111 KIFVGGIPSS-VNEDEFKDFFMQ----FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 111 ~l~V~~lp~~-~te~~L~~~f~~----~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
.|.+-++... .-+..|+++.+- +-.|.+|.|++---|....+.--++--+++.|++.|+.+
T Consensus 184 iVlcPGiNDg~~L~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 184 VVVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred EEEcCCcCCHHHHHHHHHHHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHHH
Confidence 3444445443 333444455444 777889988876556555554444555667777777654
No 355
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=20.70 E-value=1.7e+02 Score=21.05 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=27.4
Q ss_pred hhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 129 FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 129 ~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
-+.+||.|..+.--.. |+ |.|.+.+++++.+++|....+
T Consensus 16 ~L~kfG~i~Y~Skk~k--------Yv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMK--------YV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCcc--------EE-EEEECHHHHHHHHHHHhcCCC
Confidence 3468898877643221 44 678899999999998876554
No 356
>COG5584 Predicted small secreted protein [Function unknown]
Probab=20.49 E-value=1.4e+02 Score=22.78 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.3
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCC
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDR 57 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~ 57 (367)
+...+-+++.|+++++|+-..|...+
T Consensus 33 e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 33 ENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred hHHHHHHHHHhcccCCcceeEEEEec
Confidence 77778888889999998888887665
No 357
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=20.48 E-value=4.4e+02 Score=20.84 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=24.0
Q ss_pred ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHH
Q 017735 48 ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI 80 (367)
Q Consensus 48 i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al 80 (367)
|.+|+|.+++. -..+.|...|+++...++..
T Consensus 15 ip~VrLtRsrd--g~~g~a~f~F~~p~al~~~~ 45 (113)
T CHL00128 15 IPDVRLTRSRD--GSTGTATFRFKNPNILDKST 45 (113)
T ss_pred CCceEEEEccC--CCceEEEEEECCchhhhhcc
Confidence 67899999874 35678999999998766543
No 358
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=20.40 E-value=3.5e+02 Score=19.68 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=38.8
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~ 84 (367)
++++.|-|- ..+.+..+|+.-+ +|.++.+-.....+.+| +.++...+++.+++.++.++
T Consensus 6 si~v~n~pG------VL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~ 65 (76)
T PRK06737 6 SLVIHNDPS------VLLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLK 65 (76)
T ss_pred EEEEecCCC------HHHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHh
Confidence 455555553 5677888898877 67777766544333344 66776788888888777554
No 359
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=20.13 E-value=54 Score=33.79 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=49.5
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
.+||+.+-....+..-+..+++.+..+..++++..........-|+++|..+.+++.|.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~ 570 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK 570 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh
Confidence 38899888888888999999999999999888877666666668999999998886654
No 360
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=20.03 E-value=3.1e+02 Score=21.09 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=21.9
Q ss_pred hhHHHHHHhhcc-CCCccEEEEeeCCCC----CCcceEEEEEeCCHHHHHH
Q 017735 33 PALAQFIKHFGK-YGEITDSVIMKDRKT----GQPRGFGFVTYADPSVVDK 78 (367)
Q Consensus 33 ~t~~~l~~~F~~-~G~i~~~~i~~~~~t----g~srG~afV~f~~~~~a~~ 78 (367)
.+..+|++.+.+ +..-.+..++....| +++.|||.| |.+.+.|++
T Consensus 31 psr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 31 PSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 344444443332 233334444444433 356777766 566665554
Done!