Query 017735
Match_columns 367
No_of_seqs 396 out of 2623
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 04:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 4.8E-34 1.7E-38 249.6 20.7 177 12-193 8-187 (196)
2 2cjk_A Nuclear polyadenylated 100.0 2.7E-34 9.1E-39 244.8 11.9 166 15-189 1-166 (167)
3 4f02_A Polyadenylate-binding p 100.0 1.2E-33 4E-38 251.3 16.3 170 14-191 12-183 (213)
4 2qfj_A FBP-interacting repress 100.0 3.9E-33 1.3E-37 247.5 17.4 177 14-194 25-210 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 3.6E-32 1.2E-36 230.9 20.2 164 18-188 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-32 1.5E-36 231.2 19.1 163 16-186 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 1.3E-31 4.3E-36 227.8 19.6 162 17-186 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 4.9E-31 1.7E-35 226.0 16.4 164 16-187 2-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 4.7E-31 1.6E-35 230.9 13.3 173 15-191 2-196 (198)
10 1fje_B Nucleolin RBD12, protei 100.0 1.1E-30 3.7E-35 224.4 12.7 165 13-189 9-174 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 1.2E-29 4E-34 217.0 18.0 159 15-187 2-172 (172)
12 3smz_A Protein raver-1, ribonu 100.0 4.8E-29 1.6E-33 230.9 20.7 171 15-191 93-266 (284)
13 3tyt_A Heterogeneous nuclear r 100.0 2.1E-29 7.3E-34 222.3 16.6 160 16-186 3-204 (205)
14 3pgw_A U1-A; protein-RNA compl 100.0 7.5E-29 2.6E-33 229.3 19.8 163 13-187 5-281 (282)
15 2ghp_A U4/U6 snRNA-associated 100.0 8.8E-29 3E-33 230.0 17.1 168 16-189 116-291 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 8.4E-28 2.9E-32 215.8 19.0 162 15-189 32-228 (229)
17 3smz_A Protein raver-1, ribonu 100.0 1.9E-27 6.6E-32 220.0 20.1 156 15-191 20-177 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 7.8E-28 2.7E-32 223.6 17.2 161 13-191 37-199 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-27 3.9E-32 209.8 15.2 160 17-189 3-197 (198)
20 3sde_A Paraspeckle component 1 99.9 5.9E-27 2E-31 214.4 18.1 156 16-192 21-182 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 2E-24 6.9E-29 182.5 17.4 142 50-193 2-154 (158)
22 2i2y_A Fusion protein consists 99.9 1.1E-21 3.8E-26 164.3 13.2 125 60-190 10-149 (150)
23 3pgw_S U1-70K; protein-RNA com 99.9 4.9E-22 1.7E-26 194.0 9.9 89 104-192 97-185 (437)
24 2lea_A Serine/arginine-rich sp 99.9 1.1E-21 3.7E-26 161.4 9.0 125 65-192 6-130 (135)
25 4fxv_A ELAV-like protein 1; RN 99.9 3.9E-21 1.3E-25 149.3 11.1 83 106-188 16-98 (99)
26 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.2E-21 1.8E-25 161.2 12.7 87 105-191 35-121 (156)
27 3s8s_A Histone-lysine N-methyl 99.8 3.2E-20 1.1E-24 147.0 11.5 84 107-190 4-87 (110)
28 2cpz_A CUG triplet repeat RNA- 99.8 4.6E-20 1.6E-24 147.3 12.3 91 104-194 20-110 (115)
29 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-19 6.5E-24 143.6 15.5 90 104-193 10-99 (115)
30 2cq0_A Eukaryotic translation 99.8 7.7E-20 2.6E-24 142.9 12.5 90 104-193 10-99 (103)
31 2dgs_A DAZ-associated protein 99.8 1.1E-19 3.7E-24 141.1 13.0 89 104-193 5-93 (99)
32 2dnm_A SRP46 splicing factor; 99.8 6.2E-20 2.1E-24 143.5 11.6 91 104-194 8-98 (103)
33 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.7E-24 141.0 12.8 87 106-192 5-91 (99)
34 2lxi_A RNA-binding protein 10; 99.8 1.4E-20 4.7E-25 143.9 7.0 83 109-191 1-85 (91)
35 2dnz_A Probable RNA-binding pr 99.8 1.4E-19 4.7E-24 139.2 12.7 86 107-192 3-88 (95)
36 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.6E-20 1.9E-24 156.4 10.9 89 105-193 68-156 (165)
37 2cqd_A RNA-binding region cont 99.8 3.1E-19 1.1E-23 142.6 14.6 89 103-192 11-99 (116)
38 1x5u_A Splicing factor 3B subu 99.8 1.7E-19 5.8E-24 141.4 12.8 90 103-192 9-98 (105)
39 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.7E-24 141.8 11.1 90 105-194 8-97 (102)
40 2lkz_A RNA-binding protein 5; 99.8 3.9E-20 1.3E-24 142.3 8.3 83 106-188 6-94 (95)
41 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-19 3.7E-24 141.8 10.8 88 105-192 8-95 (102)
42 1x4h_A RNA-binding protein 28; 99.8 2.5E-19 8.7E-24 141.8 13.1 90 104-193 10-105 (111)
43 2cph_A RNA binding motif prote 99.8 2.5E-19 8.4E-24 141.0 12.8 91 103-193 9-101 (107)
44 2do4_A Squamous cell carcinoma 99.8 2.5E-19 8.6E-24 139.2 12.6 88 103-191 11-98 (100)
45 2d9p_A Polyadenylate-binding p 99.8 2.8E-19 9.7E-24 139.7 13.0 89 104-194 10-98 (103)
46 3p5t_L Cleavage and polyadenyl 99.8 2.9E-20 9.9E-25 141.8 6.6 84 110-193 2-87 (90)
47 2dnh_A Bruno-like 5, RNA bindi 99.8 3.5E-19 1.2E-23 139.6 13.0 89 104-193 10-101 (105)
48 3md1_A Nuclear and cytoplasmic 99.8 2.3E-19 7.8E-24 134.4 11.3 82 109-190 1-82 (83)
49 2cpf_A RNA binding motif prote 99.8 1.7E-19 5.7E-24 139.7 10.8 87 107-193 3-92 (98)
50 1x5t_A Splicing factor 3B subu 99.8 1.9E-19 6.4E-24 138.8 10.9 86 107-192 3-89 (96)
51 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-19 6.7E-24 136.0 10.4 83 107-189 4-86 (87)
52 2dgp_A Bruno-like 4, RNA bindi 99.8 2.3E-19 8E-24 140.9 11.1 89 104-192 8-99 (106)
53 2dng_A Eukaryotic translation 99.8 5.8E-19 2E-23 138.0 13.1 86 105-192 11-96 (103)
54 1p27_B RNA-binding protein 8A; 99.8 2.2E-19 7.6E-24 141.0 10.8 88 104-191 18-105 (106)
55 2do0_A HnRNP M, heterogeneous 99.8 1E-18 3.4E-23 139.1 14.6 87 105-192 11-97 (114)
56 2e5h_A Zinc finger CCHC-type a 99.8 4.5E-19 1.5E-23 136.1 12.1 84 104-187 11-94 (94)
57 2cpe_A RNA-binding protein EWS 99.8 3.6E-19 1.2E-23 141.5 11.8 89 104-192 10-106 (113)
58 2cq3_A RNA-binding protein 9; 99.8 9E-19 3.1E-23 136.8 13.7 89 104-194 10-98 (103)
59 1u6f_A Tcubp1, RNA-binding pro 99.8 5.3E-19 1.8E-23 145.9 12.9 90 103-192 36-125 (139)
60 2cqc_A Arginine/serine-rich sp 99.8 4.1E-19 1.4E-23 136.5 11.4 85 104-188 10-94 (95)
61 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.7E-19 9.2E-24 134.6 10.1 82 106-187 4-85 (85)
62 2fy1_A RNA-binding motif prote 99.8 7.4E-19 2.5E-23 140.5 12.9 85 106-191 4-88 (116)
63 1wi8_A EIF-4B, eukaryotic tran 99.8 5.8E-19 2E-23 138.2 12.1 86 105-192 11-97 (104)
64 2dh8_A DAZ-associated protein 99.8 3.4E-19 1.2E-23 139.7 10.5 89 104-193 11-99 (105)
65 3ex7_B RNA-binding protein 8A; 99.8 2.9E-19 9.9E-24 144.9 10.4 89 104-192 17-105 (126)
66 2kxn_B Transformer-2 protein h 99.8 4.6E-19 1.6E-23 144.4 11.1 87 105-191 42-128 (129)
67 2la6_A RNA-binding protein FUS 99.8 7E-19 2.4E-23 136.5 11.5 86 102-187 6-99 (99)
68 2x1f_A MRNA 3'-END-processing 99.8 5.8E-19 2E-23 136.1 10.8 85 108-192 1-85 (96)
69 2jrs_A RNA-binding protein 39; 99.8 6.7E-19 2.3E-23 138.9 11.4 88 103-190 20-107 (108)
70 2dhg_A TRNA selenocysteine ass 99.8 9.5E-19 3.2E-23 136.9 11.9 86 106-192 6-93 (104)
71 1oo0_B CG8781-PA, drosophila Y 99.8 5.6E-19 1.9E-23 139.7 10.6 88 104-191 21-108 (110)
72 2div_A TRNA selenocysteine ass 99.8 5.4E-19 1.9E-23 137.0 10.2 86 105-190 5-95 (99)
73 3q2s_C Cleavage and polyadenyl 99.8 3.8E-20 1.3E-24 165.6 4.0 83 108-190 67-151 (229)
74 4f25_A Polyadenylate-binding p 99.8 5.7E-19 2E-23 140.9 10.2 83 109-193 5-87 (115)
75 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-18 6.5E-23 134.9 13.0 87 104-192 10-96 (103)
76 4f25_A Polyadenylate-binding p 99.8 3.6E-19 1.2E-23 142.1 9.0 103 17-125 5-113 (115)
77 1x4b_A Heterogeneous nuclear r 99.8 5.1E-19 1.7E-23 141.4 9.8 86 106-192 24-109 (116)
78 4a8x_A RNA-binding protein wit 99.8 6.2E-19 2.1E-23 133.4 9.5 85 107-191 2-87 (88)
79 1x4a_A Splicing factor, argini 99.8 2.8E-18 9.5E-23 135.5 13.5 85 104-191 17-101 (109)
80 2cqg_A TDP-43, TAR DNA-binding 99.8 3E-18 1E-22 133.8 13.4 88 104-193 10-97 (103)
81 2khc_A Testis-specific RNP-typ 99.8 1E-18 3.4E-23 140.0 10.9 83 105-187 36-118 (118)
82 2cqp_A RNA-binding protein 12; 99.8 6.8E-19 2.3E-23 136.2 9.5 85 105-189 11-95 (98)
83 3ucg_A Polyadenylate-binding p 99.8 1.3E-18 4.5E-23 132.0 10.8 82 108-190 5-86 (89)
84 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4E-23 134.4 10.7 84 106-192 6-93 (96)
85 2ywk_A Putative RNA-binding pr 99.8 1E-18 3.6E-23 134.3 10.2 83 105-188 12-94 (95)
86 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-18 5.2E-23 137.1 11.3 87 104-191 20-106 (109)
87 2dgw_A Probable RNA-binding pr 99.8 2.4E-18 8.1E-23 131.3 11.9 84 105-191 6-89 (91)
88 2cpi_A CCR4-NOT transcription 99.8 1.8E-18 6.3E-23 137.1 11.5 88 104-191 10-103 (111)
89 3ns6_A Eukaryotic translation 99.8 2.1E-19 7.1E-24 139.8 5.8 83 108-190 5-94 (100)
90 2m2b_A RNA-binding protein 10; 99.8 6.2E-19 2.1E-23 144.1 8.9 91 104-195 18-114 (131)
91 1sjq_A Polypyrimidine tract-bi 99.8 1E-18 3.5E-23 136.1 9.6 83 105-193 12-96 (105)
92 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-18 5.8E-23 132.3 10.8 84 106-191 5-88 (92)
93 3s7r_A Heterogeneous nuclear r 99.8 2.3E-18 7.9E-23 130.2 11.1 81 105-186 7-87 (87)
94 1x4c_A Splicing factor, argini 99.8 4.3E-18 1.5E-22 134.2 12.9 80 106-192 12-96 (108)
95 2dis_A Unnamed protein product 99.8 2.8E-18 9.7E-23 135.4 11.7 88 106-193 5-96 (109)
96 3ulh_A THO complex subunit 4; 99.8 2.3E-18 7.9E-23 135.4 11.0 82 105-187 25-106 (107)
97 1s79_A Lupus LA protein; RRM, 99.8 1.4E-18 4.8E-23 135.8 9.6 82 105-188 7-88 (103)
98 2hgn_A Heterogeneous nuclear r 99.8 2.9E-19 1E-23 147.0 5.9 122 64-190 2-124 (139)
99 2cq4_A RNA binding motif prote 99.8 2.2E-19 7.6E-24 143.0 5.1 84 107-191 23-106 (114)
100 2kt5_A RNA and export factor-b 99.8 4.7E-18 1.6E-22 137.4 13.0 90 105-195 31-120 (124)
101 2dgu_A Heterogeneous nuclear r 99.8 4.9E-18 1.7E-22 132.7 12.5 81 105-193 7-87 (103)
102 1x4d_A Matrin 3; structural ge 99.8 2.1E-18 7.2E-23 134.1 10.1 82 106-193 12-96 (102)
103 2hgl_A HNRPF protein, heteroge 99.8 6E-19 2E-23 144.7 7.4 84 105-190 40-126 (136)
104 2cq1_A PTB-like protein L; RRM 99.8 6.1E-18 2.1E-22 131.5 12.6 83 105-193 11-95 (101)
105 2ek1_A RNA-binding protein 12; 99.8 7.5E-19 2.6E-23 135.1 7.4 82 107-188 13-94 (95)
106 1x4e_A RNA binding motif, sing 99.8 7.4E-19 2.5E-23 132.3 7.1 81 107-187 3-83 (85)
107 1p1t_A Cleavage stimulation fa 99.8 8.1E-19 2.8E-23 137.2 7.6 85 107-191 6-90 (104)
108 1wez_A HnRNP H', FTP-3, hetero 99.8 3E-18 1E-22 133.7 10.6 83 105-190 11-93 (102)
109 2fc8_A NCL protein; structure 99.8 5.2E-18 1.8E-22 132.1 12.0 86 103-191 9-94 (102)
110 2cpx_A Hypothetical protein FL 99.8 1E-18 3.5E-23 139.3 7.9 90 105-194 21-110 (115)
111 1wg5_A Heterogeneous nuclear r 99.8 5.2E-18 1.8E-22 132.8 11.7 85 105-191 11-96 (104)
112 2fc9_A NCL protein; structure 99.8 5.6E-18 1.9E-22 131.8 11.6 83 105-191 11-93 (101)
113 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-18 4.9E-23 135.0 8.1 85 104-190 14-99 (100)
114 2dnq_A RNA-binding protein 4B; 99.8 6.9E-18 2.4E-22 128.4 11.6 79 106-192 5-83 (90)
115 3n9u_C Cleavage and polyadenyl 99.8 2.2E-18 7.6E-23 144.9 9.7 82 108-189 54-137 (156)
116 2ad9_A Polypyrimidine tract-bi 99.8 5.3E-18 1.8E-22 135.3 11.2 83 105-193 27-111 (119)
117 2mss_A Protein (musashi1); RNA 99.8 1.6E-18 5.5E-23 127.2 7.5 75 111-186 1-75 (75)
118 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-18 5.5E-23 127.8 7.5 76 110-186 1-76 (77)
119 3r27_A HnRNP L, heterogeneous 99.7 4.5E-18 1.5E-22 131.2 10.0 80 105-190 17-98 (100)
120 2ki2_A SS-DNA binding protein 99.7 6.9E-19 2.4E-23 133.9 5.2 84 110-194 2-85 (90)
121 1x5o_A RNA binding motif, sing 99.7 9.4E-18 3.2E-22 133.5 11.8 84 105-189 21-112 (114)
122 1wex_A Hypothetical protein (r 99.7 1E-17 3.4E-22 131.0 11.5 83 105-193 11-95 (104)
123 2jwn_A Embryonic polyadenylate 99.7 7.6E-18 2.6E-22 136.1 10.9 83 108-191 35-117 (124)
124 1wf1_A RNA-binding protein RAL 99.7 8.1E-18 2.8E-22 133.1 10.8 96 87-191 6-102 (110)
125 1why_A Hypothetical protein ri 99.7 1.3E-17 4.6E-22 128.6 11.6 81 105-191 13-95 (97)
126 2dgt_A RNA-binding protein 30; 99.7 1.5E-17 5.2E-22 127.1 11.7 81 104-192 5-85 (92)
127 2err_A Ataxin-2-binding protei 99.7 7.4E-18 2.5E-22 133.1 10.0 85 103-189 23-107 (109)
128 2cpy_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 136.2 7.9 84 105-190 11-95 (114)
129 2wbr_A GW182, gawky, LD47780P; 99.7 5.4E-18 1.8E-22 126.4 8.2 74 108-187 6-79 (89)
130 2cpj_A Non-POU domain-containi 99.7 1.9E-17 6.4E-22 128.3 11.7 82 105-192 11-92 (99)
131 2nlw_A Eukaryotic translation 99.7 9E-18 3.1E-22 131.7 9.9 85 105-191 11-102 (105)
132 2dnn_A RNA-binding protein 12; 99.7 5.7E-18 1.9E-22 133.5 8.7 79 108-189 15-93 (109)
133 1x4f_A Matrin 3; structural ge 99.7 1.4E-17 4.8E-22 131.4 11.0 83 106-194 22-107 (112)
134 1wel_A RNA-binding protein 12; 99.7 2.7E-18 9.1E-23 138.9 6.4 85 105-190 21-105 (124)
135 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-17 5.5E-22 136.9 11.2 82 105-186 59-140 (140)
136 1x4g_A Nucleolysin TIAR; struc 99.7 1.7E-17 5.9E-22 130.9 10.9 82 106-193 22-103 (109)
137 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-17 5.1E-22 128.4 10.3 82 105-191 15-96 (97)
138 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-18 5.1E-23 135.0 4.7 85 105-191 13-97 (101)
139 2db1_A Heterogeneous nuclear r 99.7 4.5E-18 1.5E-22 136.4 7.6 83 106-190 14-99 (118)
140 2dnp_A RNA-binding protein 14; 99.7 2.1E-17 7.2E-22 125.7 10.8 79 105-191 5-83 (90)
141 2e5g_A U6 snRNA-specific termi 99.7 4E-17 1.4E-21 125.2 12.0 81 107-193 6-86 (94)
142 2jvr_A Nucleolar protein 3; RN 99.7 1E-17 3.4E-22 132.5 8.4 78 108-189 27-105 (111)
143 2hvz_A Splicing factor, argini 99.7 1.6E-17 5.4E-22 129.2 9.4 78 110-192 1-78 (101)
144 2ytc_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.3E-21 122.9 10.6 78 104-187 7-85 (85)
145 2jvo_A Nucleolar protein 3; nu 99.7 3E-17 1E-21 129.4 10.2 82 102-191 24-105 (108)
146 2cpd_A Apobec-1 stimulating pr 99.7 8.5E-17 2.9E-21 124.6 12.5 80 104-191 10-91 (99)
147 2cqh_A IGF-II mRNA-binding pro 99.7 2E-17 6.9E-22 126.6 8.8 80 106-192 5-86 (93)
148 2lmi_A GRSF-1, G-rich sequence 99.7 7.6E-18 2.6E-22 132.6 6.4 84 105-190 7-93 (107)
149 2la4_A Nuclear and cytoplasmic 99.7 2.9E-17 9.9E-22 127.7 9.4 77 107-189 25-101 (101)
150 1iqt_A AUF1, heterogeneous nuc 99.7 6.5E-18 2.2E-22 123.9 5.4 75 111-186 1-75 (75)
151 2a3j_A U1 small nuclear ribonu 99.7 4.3E-17 1.5E-21 132.0 10.4 83 106-191 26-112 (127)
152 1x5p_A Negative elongation fac 99.7 2.2E-16 7.4E-21 121.8 13.6 81 105-193 11-91 (97)
153 2krb_A Eukaryotic translation 99.7 1.6E-17 5.5E-22 123.8 6.9 74 109-184 1-81 (81)
154 2lcw_A RNA-binding protein FUS 99.5 9.2E-19 3.2E-23 139.9 0.0 86 106-191 4-97 (116)
155 1sjr_A Polypyrimidine tract-bi 99.7 9.1E-17 3.1E-21 134.7 11.8 82 106-191 43-126 (164)
156 2f3j_A RNA and export factor b 99.7 4.2E-17 1.5E-21 140.0 10.0 87 105-192 84-170 (177)
157 2xnq_A Nuclear polyadenylated 99.7 9.3E-17 3.2E-21 124.0 11.0 78 104-189 17-95 (97)
158 3beg_B Splicing factor, argini 99.7 3.8E-17 1.3E-21 130.3 9.0 76 107-189 14-94 (115)
159 2xs2_A Deleted in azoospermia- 99.7 1.6E-17 5.3E-22 129.5 6.6 84 106-192 6-89 (102)
160 2kvi_A Nuclear polyadenylated 99.7 4.1E-17 1.4E-21 125.7 8.8 79 106-192 7-86 (96)
161 4fxv_A ELAV-like protein 1; RN 99.7 6.1E-17 2.1E-21 125.5 9.7 80 15-98 17-98 (99)
162 1fjc_A Nucleolin RBD2, protein 99.7 3.4E-17 1.2E-21 126.0 8.1 83 104-191 11-93 (96)
163 2hgm_A HNRPF protein, heteroge 99.7 2.2E-17 7.6E-22 133.3 7.0 82 106-190 39-122 (126)
164 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.7E-22 134.1 5.7 81 108-190 22-106 (123)
165 2e44_A Insulin-like growth fac 99.7 8.7E-17 3E-21 123.7 9.4 81 106-190 12-93 (96)
166 2cq2_A Hypothetical protein LO 99.7 6.9E-17 2.4E-21 127.6 8.8 84 105-194 21-111 (114)
167 4f02_A Polyadenylate-binding p 99.7 1.2E-16 4E-21 141.4 11.1 85 106-190 12-96 (213)
168 1whx_A Hypothetical protein ri 99.7 9.5E-17 3.3E-21 127.1 9.3 78 108-191 9-86 (111)
169 1nu4_A U1A RNA binding domain; 99.7 4.6E-17 1.6E-21 125.5 7.3 83 106-191 5-91 (97)
170 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-16 5.4E-21 126.5 10.3 83 106-191 5-87 (115)
171 1wg1_A KIAA1579 protein, homol 99.7 1.4E-16 4.8E-21 120.6 9.0 76 108-190 4-79 (88)
172 2lxi_A RNA-binding protein 10; 99.7 5.4E-17 1.8E-21 123.8 6.5 81 17-101 1-85 (91)
173 2lkz_A RNA-binding protein 5; 99.7 9E-17 3.1E-21 123.5 7.7 82 13-98 5-94 (95)
174 3d2w_A TAR DNA-binding protein 99.7 1.6E-16 5.4E-21 120.7 8.2 80 105-191 7-86 (89)
175 2cqg_A TDP-43, TAR DNA-binding 99.7 5E-16 1.7E-20 121.1 11.0 86 14-103 12-97 (103)
176 2voo_A Lupus LA protein; RNA-b 99.7 4.2E-16 1.4E-20 135.7 11.4 116 72-189 63-187 (193)
177 1b7f_A Protein (SXL-lethal pro 99.7 3.4E-16 1.1E-20 132.4 10.5 85 108-192 2-86 (168)
178 1fxl_A Paraneoplastic encephal 99.7 3.9E-16 1.3E-20 131.7 10.9 83 109-191 2-84 (167)
179 3s8s_A Histone-lysine N-methyl 99.7 4.1E-16 1.4E-20 123.2 10.2 81 15-99 4-86 (110)
180 1wf0_A TDP-43, TAR DNA-binding 99.7 1.6E-16 5.5E-21 120.3 7.4 79 107-192 3-81 (88)
181 2j8a_A Histone-lysine N-methyl 99.7 2.3E-16 8E-21 125.4 8.1 79 110-188 3-95 (136)
182 3egn_A RNA-binding protein 40; 99.6 6.2E-17 2.1E-21 134.1 4.9 87 106-192 42-133 (143)
183 1l3k_A Heterogeneous nuclear r 99.6 5.9E-16 2E-20 134.4 10.9 86 105-191 9-94 (196)
184 3zzy_A Polypyrimidine tract-bi 99.6 1.3E-15 4.3E-20 123.1 11.9 82 107-193 26-110 (130)
185 2dnl_A Cytoplasmic polyadenyla 99.6 8.7E-16 3E-20 122.1 10.5 78 107-187 6-86 (114)
186 2e5i_A Heterogeneous nuclear r 99.6 2.6E-15 8.7E-20 120.7 12.9 78 109-192 25-105 (124)
187 2diu_A KIAA0430 protein; struc 99.6 1.4E-15 4.9E-20 114.3 10.4 78 107-194 6-89 (96)
188 3u1l_A PRE-mRNA-splicing facto 99.6 4.1E-16 1.4E-20 139.2 8.6 105 82-192 107-232 (240)
189 2dgs_A DAZ-associated protein 99.6 1.3E-15 4.6E-20 117.7 10.4 86 14-103 7-93 (99)
190 1whw_A Hypothetical protein ri 99.6 1.9E-15 6.5E-20 116.8 10.4 86 14-103 5-92 (99)
191 3s7r_A Heterogeneous nuclear r 99.6 1.5E-15 5.3E-20 114.5 9.6 80 13-96 7-87 (87)
192 2hzc_A Splicing factor U2AF 65 99.6 1E-15 3.5E-20 115.3 8.3 72 107-185 4-86 (87)
193 2bz2_A Negative elongation fac 99.6 1.7E-15 5.9E-20 121.7 9.9 79 106-192 36-114 (121)
194 2cq0_A Eukaryotic translation 99.6 2.4E-15 8.2E-20 117.2 10.4 85 14-102 12-98 (103)
195 2dgo_A Cytotoxic granule-assoc 99.6 3.3E-15 1.1E-19 118.8 11.3 86 14-103 12-99 (115)
196 2cpz_A CUG triplet repeat RNA- 99.6 2.8E-15 9.5E-20 119.3 10.9 85 15-103 23-109 (115)
197 2pe8_A Splicing factor 45; RRM 99.6 2.6E-15 9E-20 117.4 10.5 82 107-188 6-93 (105)
198 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.9E-15 6.5E-20 117.5 9.6 86 14-103 9-96 (102)
199 2dnz_A Probable RNA-binding pr 99.6 2.7E-15 9.1E-20 115.0 10.3 84 15-102 3-88 (95)
200 3p5t_L Cleavage and polyadenyl 99.6 8.4E-16 2.9E-20 116.8 7.2 80 18-101 2-85 (90)
201 2rs2_A Musashi-1, RNA-binding 99.6 2.2E-15 7.5E-20 118.8 9.7 85 13-101 21-106 (109)
202 3md3_A Nuclear and cytoplasmic 99.6 2.2E-15 7.5E-20 126.9 10.3 82 110-192 1-82 (166)
203 2dh8_A DAZ-associated protein 99.6 1.4E-15 4.9E-20 118.9 8.5 86 14-103 13-99 (105)
204 2cqd_A RNA-binding region cont 99.6 2.8E-15 9.7E-20 119.4 10.3 86 13-102 13-99 (116)
205 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.3E-15 8E-20 113.3 9.3 81 15-99 4-86 (87)
206 1x5t_A Splicing factor 3B subu 99.6 2.6E-15 8.9E-20 115.3 9.5 85 15-103 3-90 (96)
207 1x5s_A Cold-inducible RNA-bind 99.6 1.8E-15 6.1E-20 117.6 8.6 85 14-102 9-95 (102)
208 1x4h_A RNA-binding protein 28; 99.6 3.6E-15 1.2E-19 117.7 10.4 86 14-103 12-105 (111)
209 2qfj_A FBP-interacting repress 99.6 2.3E-15 7.9E-20 132.7 10.1 83 108-190 27-109 (216)
210 3md1_A Nuclear and cytoplasmic 99.6 4.7E-15 1.6E-19 110.7 10.1 79 18-100 2-82 (83)
211 3tyt_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 131.3 10.4 78 108-190 3-81 (205)
212 2dnm_A SRP46 splicing factor; 99.6 2.5E-15 8.5E-20 117.1 8.7 85 14-102 10-96 (103)
213 1x5u_A Splicing factor 3B subu 99.6 2.9E-15 9.8E-20 117.1 8.9 86 13-102 11-98 (105)
214 2do4_A Squamous cell carcinoma 99.6 6E-15 2E-19 114.3 10.6 83 14-101 14-98 (100)
215 3lqv_A PRE-mRNA branch site pr 99.6 6.7E-16 2.3E-20 122.8 5.2 103 14-135 5-109 (115)
216 1wez_A HnRNP H', FTP-3, hetero 99.6 3.5E-15 1.2E-19 116.2 9.0 81 14-100 12-93 (102)
217 2cpf_A RNA binding motif prote 99.6 4E-15 1.4E-19 114.8 9.3 85 15-103 3-92 (98)
218 2dng_A Eukaryotic translation 99.6 8E-15 2.7E-19 114.2 10.7 85 13-102 11-96 (103)
219 2hvz_A Splicing factor, argini 99.6 2.5E-15 8.7E-20 116.6 7.8 92 18-118 1-100 (101)
220 2cqc_A Arginine/serine-rich sp 99.6 5.8E-15 2E-19 113.1 9.5 81 14-98 12-94 (95)
221 1wi8_A EIF-4B, eukaryotic tran 99.6 4.8E-15 1.6E-19 115.7 9.0 84 14-102 12-97 (104)
222 2fy1_A RNA-binding motif prote 99.6 7.9E-15 2.7E-19 117.0 10.4 84 13-101 3-88 (116)
223 1x4b_A Heterogeneous nuclear r 99.6 4.9E-15 1.7E-19 118.0 9.2 83 16-102 26-109 (116)
224 1p27_B RNA-binding protein 8A; 99.6 5.4E-15 1.9E-19 115.7 9.3 82 15-100 21-104 (106)
225 3ucg_A Polyadenylate-binding p 99.6 3.9E-15 1.3E-19 112.6 8.2 81 15-99 4-85 (89)
226 2cph_A RNA binding motif prote 99.6 5.6E-15 1.9E-19 115.8 9.3 87 13-103 11-101 (107)
227 2e5h_A Zinc finger CCHC-type a 99.6 6.3E-15 2.2E-19 112.7 9.2 79 14-96 13-93 (94)
228 1s79_A Lupus LA protein; RRM, 99.6 3.9E-15 1.3E-19 116.1 8.0 80 14-98 8-88 (103)
229 2x1f_A MRNA 3'-END-processing 99.6 6E-15 2.1E-19 113.4 9.0 82 16-101 1-84 (96)
230 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.6E-15 1.6E-19 111.2 8.1 79 14-96 4-84 (85)
231 2dit_A HIV TAT specific factor 99.6 2.4E-14 8.2E-19 113.4 12.6 84 105-192 11-105 (112)
232 2d9p_A Polyadenylate-binding p 99.6 1.2E-14 4E-19 113.3 10.6 84 14-103 12-97 (103)
233 2kxn_B Transformer-2 protein h 99.6 6E-15 2.1E-19 119.9 8.9 82 15-100 44-127 (129)
234 2cpe_A RNA-binding protein EWS 99.6 9.9E-15 3.4E-19 115.6 10.0 86 13-102 11-106 (113)
235 2div_A TRNA selenocysteine ass 99.6 7.6E-15 2.6E-19 113.4 9.0 83 14-100 6-95 (99)
236 3nmr_A Cugbp ELAV-like family 99.6 6.8E-15 2.3E-19 125.1 9.6 84 108-191 2-90 (175)
237 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.1E-14 3.8E-19 122.3 10.7 83 15-101 37-121 (156)
238 2dgp_A Bruno-like 4, RNA bindi 99.6 5.3E-15 1.8E-19 115.8 8.1 85 14-102 10-99 (106)
239 1sjq_A Polypyrimidine tract-bi 99.6 4.8E-15 1.6E-19 115.3 7.7 81 13-103 12-96 (105)
240 2do0_A HnRNP M, heterogeneous 99.6 2.2E-14 7.7E-19 113.7 11.6 82 14-100 12-95 (114)
241 1wg5_A Heterogeneous nuclear r 99.6 8.7E-15 3E-19 114.3 8.9 82 15-101 13-96 (104)
242 2cpy_A RNA-binding protein 12; 99.6 5.2E-15 1.8E-19 117.6 7.7 81 14-99 12-94 (114)
243 2dnh_A Bruno-like 5, RNA bindi 99.6 1.7E-14 5.8E-19 112.7 10.4 83 15-102 13-100 (105)
244 2cjk_A Nuclear polyadenylated 99.6 6.4E-15 2.2E-19 124.5 8.5 80 108-189 2-81 (167)
245 2jrs_A RNA-binding protein 39; 99.6 9.6E-15 3.3E-19 114.9 8.9 83 14-100 23-107 (108)
246 2dhg_A TRNA selenocysteine ass 99.6 1.3E-14 4.6E-19 113.1 9.7 84 14-102 6-93 (104)
247 1u6f_A Tcubp1, RNA-binding pro 99.6 9.9E-15 3.4E-19 120.1 9.3 84 15-102 40-125 (139)
248 2mss_A Protein (musashi1); RNA 99.6 4.9E-15 1.7E-19 108.4 6.7 74 19-96 1-75 (75)
249 2dha_A FLJ20171 protein; RRM d 99.6 6.9E-15 2.4E-19 118.3 7.9 84 9-97 15-103 (123)
250 2xs2_A Deleted in azoospermia- 99.6 3.9E-15 1.3E-19 115.8 6.3 85 14-103 6-90 (102)
251 2ek1_A RNA-binding protein 12; 99.6 5.9E-15 2E-19 113.1 7.2 79 15-97 13-93 (95)
252 2dis_A Unnamed protein product 99.6 1.1E-14 3.6E-19 114.7 8.8 86 14-103 5-96 (109)
253 2cq3_A RNA-binding protein 9; 99.6 3E-14 1E-18 110.9 11.1 84 14-103 12-97 (103)
254 2dgw_A Probable RNA-binding pr 99.5 2.4E-14 8.3E-19 108.8 10.2 81 14-100 7-88 (91)
255 2cqp_A RNA-binding protein 12; 99.5 8.4E-15 2.9E-19 112.9 7.7 81 15-99 13-95 (98)
256 2ywk_A Putative RNA-binding pr 99.5 1.6E-14 5.3E-19 110.7 9.1 80 13-97 12-93 (95)
257 2la6_A RNA-binding protein FUS 99.5 1.9E-14 6.6E-19 111.2 9.6 80 13-96 9-98 (99)
258 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.5E-15 2.2E-19 108.2 6.5 75 18-96 1-76 (77)
259 3ns6_A Eukaryotic translation 99.5 7.3E-15 2.5E-19 113.9 7.1 85 15-99 4-93 (100)
260 1p1t_A Cleavage stimulation fa 99.5 8.3E-15 2.8E-19 114.2 7.5 83 14-100 5-89 (104)
261 1oo0_B CG8781-PA, drosophila Y 99.5 1.3E-14 4.5E-19 114.4 8.7 82 15-100 24-107 (110)
262 3ex7_B RNA-binding protein 8A; 99.5 1.1E-14 3.6E-19 117.8 8.3 85 14-102 19-105 (126)
263 1x4e_A RNA binding motif, sing 99.5 6.5E-15 2.2E-19 110.5 6.5 78 15-96 3-82 (85)
264 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.5E-14 8.6E-19 111.3 10.0 84 13-102 11-96 (103)
265 2dnn_A RNA-binding protein 12; 99.5 9.2E-15 3.1E-19 115.1 7.3 78 16-99 15-93 (109)
266 2ad9_A Polypyrimidine tract-bi 99.5 2.5E-14 8.6E-19 114.0 9.6 80 14-103 28-111 (119)
267 4a8x_A RNA-binding protein wit 99.5 1.3E-14 4.5E-19 109.4 7.6 81 16-100 3-86 (88)
268 1iqt_A AUF1, heterogeneous nuc 99.5 4.3E-15 1.5E-19 108.6 4.8 74 19-96 1-75 (75)
269 3n9u_C Cleavage and polyadenyl 99.5 1.5E-14 5.2E-19 121.4 8.7 80 16-99 54-137 (156)
270 2lea_A Serine/arginine-rich sp 99.5 1.4E-14 4.8E-19 118.7 8.2 85 15-103 45-131 (135)
271 2wbr_A GW182, gawky, LD47780P; 99.5 1.8E-14 6E-19 107.4 7.9 71 16-96 6-78 (89)
272 3ulh_A THO complex subunit 4; 99.5 2.7E-14 9.2E-19 111.9 9.4 78 15-97 27-106 (107)
273 3pgw_A U1-A; protein-RNA compl 99.5 2.9E-14 1E-18 131.1 11.2 84 105-191 5-92 (282)
274 2adc_A Polypyrimidine tract-bi 99.5 2.4E-14 8.2E-19 127.9 10.3 83 105-192 30-113 (229)
275 2dgv_A HnRNP M, heterogeneous 99.5 3E-14 1E-18 108.5 9.3 82 14-101 5-88 (92)
276 2cq4_A RNA binding motif prote 99.5 8.1E-15 2.8E-19 116.4 6.4 81 15-99 23-104 (114)
277 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.2E-15 2.5E-19 113.9 5.9 84 11-99 13-98 (100)
278 2db1_A Heterogeneous nuclear r 99.5 2.2E-14 7.6E-19 114.7 8.9 80 14-98 14-97 (118)
279 2khc_A Testis-specific RNP-typ 99.5 1.3E-14 4.4E-19 115.9 7.4 79 14-96 37-117 (118)
280 2hgl_A HNRPF protein, heteroge 99.5 1.9E-14 6.5E-19 117.8 8.5 79 15-98 42-124 (136)
281 2jwn_A Embryonic polyadenylate 99.5 2.2E-14 7.5E-19 115.6 8.7 83 15-101 34-117 (124)
282 2kt5_A RNA and export factor-b 99.5 5E-14 1.7E-18 113.5 10.7 84 15-103 33-118 (124)
283 2m2b_A RNA-binding protein 10; 99.5 8.4E-15 2.9E-19 119.4 5.9 83 14-101 20-110 (131)
284 2cpi_A CCR4-NOT transcription 99.5 3.8E-14 1.3E-18 112.0 8.8 82 15-100 13-102 (111)
285 2cq1_A PTB-like protein L; RRM 99.5 6.1E-14 2.1E-18 108.8 9.8 79 14-102 12-94 (101)
286 2dnl_A Cytoplasmic polyadenyla 99.5 2.9E-14 9.8E-19 113.3 8.1 79 14-97 5-86 (114)
287 1x4a_A Splicing factor, argini 99.5 5.9E-14 2E-18 110.4 9.7 82 13-101 18-101 (109)
288 2dgx_A KIAA0430 protein; RRM d 99.5 3.8E-14 1.3E-18 108.9 8.4 80 15-101 7-92 (96)
289 1wel_A RNA-binding protein 12; 99.5 1E-14 3.4E-19 117.7 5.3 81 15-99 23-104 (124)
290 3v4m_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 110.6 8.6 82 107-188 3-96 (105)
291 3d2w_A TAR DNA-binding protein 99.5 3.2E-14 1.1E-18 107.9 7.6 79 13-100 7-85 (89)
292 3q2s_C Cleavage and polyadenyl 99.5 2.4E-14 8.1E-19 127.9 8.0 80 16-99 67-150 (229)
293 2hgm_A HNRPF protein, heteroge 99.5 1.2E-14 4.2E-19 117.2 5.2 79 15-99 40-121 (126)
294 1qm9_A Polypyrimidine tract-bi 99.5 3.8E-14 1.3E-18 123.4 8.7 80 108-192 2-82 (198)
295 2ki2_A SS-DNA binding protein 99.5 1.3E-14 4.3E-19 110.1 4.8 79 18-101 2-82 (90)
296 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 119.0 5.4 80 15-100 44-124 (139)
297 3sde_A Paraspeckle component 1 99.5 6.9E-14 2.4E-18 127.4 10.5 81 103-189 16-96 (261)
298 3r27_A HnRNP L, heterogeneous 99.5 7.3E-14 2.5E-18 107.5 8.9 82 8-99 12-97 (100)
299 1wex_A Hypothetical protein (r 99.5 7.8E-14 2.7E-18 108.8 9.1 79 14-102 12-94 (104)
300 2kn4_A Immunoglobulin G-bindin 99.5 5.7E-14 1.9E-18 118.0 9.0 83 16-102 69-153 (158)
301 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.2E-13 1.4E-17 103.7 12.6 68 119-193 27-94 (100)
302 1x4f_A Matrin 3; structural ge 99.5 6.1E-14 2.1E-18 110.5 7.9 79 14-102 22-105 (112)
303 2fc8_A NCL protein; structure 99.5 1.6E-13 5.4E-18 106.5 10.2 82 14-102 12-95 (102)
304 1x5o_A RNA binding motif, sing 99.5 1.2E-13 4E-18 109.6 9.7 80 14-98 22-111 (114)
305 1rk8_A CG8781-PA, CG8781-PA pr 99.5 8E-14 2.7E-18 118.1 9.2 84 15-102 70-155 (165)
306 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 7.9E-14 2.7E-18 114.6 8.7 78 15-96 61-140 (140)
307 1x4g_A Nucleolysin TIAR; struc 99.5 1.3E-13 4.3E-18 108.5 9.5 85 9-103 17-103 (109)
308 1fje_B Nucleolin RBD12, protei 99.5 1.7E-14 5.7E-19 123.0 4.7 85 105-191 9-93 (175)
309 2err_A Ataxin-2-binding protei 99.5 7.9E-14 2.7E-18 109.8 8.2 80 14-99 26-107 (109)
310 2fc9_A NCL protein; structure 99.5 1.3E-13 4.4E-18 106.9 9.2 81 14-102 12-94 (101)
311 1x4c_A Splicing factor, argini 99.5 1.5E-13 5.2E-18 107.9 9.6 79 14-103 12-97 (108)
312 3ue2_A Poly(U)-binding-splicin 99.5 1.1E-13 3.7E-18 110.4 8.5 81 108-188 19-108 (118)
313 1wf0_A TDP-43, TAR DNA-binding 99.5 6.5E-14 2.2E-18 105.8 6.8 79 15-102 3-81 (88)
314 2lmi_A GRSF-1, G-rich sequence 99.5 4.1E-14 1.4E-18 111.0 5.7 80 14-98 8-91 (107)
315 1fj7_A Nucleolin RBD1, protein 99.5 1.5E-14 5.2E-19 112.2 3.1 83 14-101 14-97 (101)
316 2nlw_A Eukaryotic translation 99.5 1.4E-13 4.9E-18 107.5 8.1 84 15-100 13-101 (105)
317 2la4_A Nuclear and cytoplasmic 99.5 2.3E-13 7.7E-18 105.5 9.1 74 15-98 25-100 (101)
318 2dnq_A RNA-binding protein 4B; 99.4 3.1E-13 1.1E-17 102.4 9.0 77 14-102 5-83 (90)
319 1jmt_A Splicing factor U2AF 35 99.4 3.6E-14 1.2E-18 110.8 3.7 72 114-186 20-103 (104)
320 1x4d_A Matrin 3; structural ge 99.4 2.6E-13 8.9E-18 105.2 8.4 79 15-102 13-95 (102)
321 1why_A Hypothetical protein ri 99.4 3E-13 1E-17 104.0 8.7 76 15-100 15-94 (97)
322 2g4b_A Splicing factor U2AF 65 99.4 2.9E-13 9.9E-18 114.7 9.4 77 108-191 3-90 (172)
323 2j8a_A Histone-lysine N-methyl 99.4 2E-13 6.7E-18 108.6 7.6 76 18-97 3-94 (136)
324 2krb_A Eukaryotic translation 99.4 1.3E-13 4.4E-18 102.4 6.0 75 17-93 1-80 (81)
325 2f3j_A RNA and export factor b 99.4 2E-13 6.7E-18 117.1 7.9 80 16-100 87-168 (177)
326 2cpj_A Non-POU domain-containi 99.4 3.6E-13 1.2E-17 103.9 8.7 78 14-101 12-91 (99)
327 2cpx_A Hypothetical protein FL 99.4 7.4E-14 2.5E-18 110.9 4.8 83 16-102 24-108 (115)
328 2lcw_A RNA-binding protein FUS 99.1 1.1E-14 3.9E-19 115.9 0.0 85 14-102 4-98 (116)
329 2e5g_A U6 snRNA-specific termi 99.4 7.1E-13 2.4E-17 101.3 9.8 80 14-102 5-85 (94)
330 2dgt_A RNA-binding protein 30; 99.4 1E-12 3.4E-17 100.0 10.2 77 14-102 7-85 (92)
331 3pgw_S U1-70K; protein-RNA com 99.4 2.3E-13 7.9E-18 132.7 8.1 80 17-100 102-183 (437)
332 2dgu_A Heterogeneous nuclear r 99.4 6.6E-13 2.2E-17 103.3 9.0 77 15-103 9-87 (103)
333 2jvr_A Nucleolar protein 3; RN 99.4 2.8E-13 9.7E-18 106.8 6.7 76 16-99 27-105 (111)
334 2yh0_A Splicing factor U2AF 65 99.4 8.9E-13 3.1E-17 114.3 10.6 78 108-192 3-91 (198)
335 2e5j_A Methenyltetrahydrofolat 99.4 5.4E-13 1.8E-17 102.6 7.5 77 15-100 17-95 (97)
336 2jvo_A Nucleolar protein 3; nu 99.4 9.3E-13 3.2E-17 103.5 9.0 76 13-100 27-104 (108)
337 2ytc_A PRE-mRNA-splicing facto 99.4 7.8E-13 2.7E-17 98.9 8.1 74 13-96 8-84 (85)
338 2pe8_A Splicing factor 45; RRM 99.4 1.7E-12 5.9E-17 101.3 10.3 86 13-98 4-93 (105)
339 2dnp_A RNA-binding protein 14; 99.4 9.8E-13 3.3E-17 99.6 8.6 76 14-101 6-83 (90)
340 1fjc_A Nucleolin RBD2, protein 99.4 5.1E-13 1.7E-17 102.4 6.8 80 13-101 12-93 (96)
341 2a3j_A U1 small nuclear ribonu 99.4 6.7E-13 2.3E-17 107.3 7.8 79 15-100 27-111 (127)
342 1nu4_A U1A RNA binding domain; 99.4 3.6E-13 1.2E-17 103.4 5.8 81 13-100 4-90 (97)
343 2cqh_A IGF-II mRNA-binding pro 99.4 8.7E-13 3E-17 100.5 7.5 78 14-102 5-86 (93)
344 2cq2_A Hypothetical protein LO 99.4 7.9E-13 2.7E-17 104.2 7.1 78 12-99 20-106 (114)
345 1wf1_A RNA-binding protein RAL 99.4 1.5E-12 5E-17 102.5 8.7 73 17-101 27-102 (110)
346 1whx_A Hypothetical protein ri 99.4 1.1E-12 3.8E-17 103.5 7.9 76 14-99 7-84 (111)
347 1wg1_A KIAA1579 protein, homol 99.4 2.3E-12 7.9E-17 97.2 9.2 74 15-99 3-78 (88)
348 2cpd_A Apobec-1 stimulating pr 99.4 3.1E-12 1.1E-16 98.6 9.7 76 14-101 12-91 (99)
349 2e44_A Insulin-like growth fac 99.4 1.2E-12 4.2E-17 100.2 7.2 78 15-100 13-93 (96)
350 3beg_B Splicing factor, argini 99.3 1E-12 3.6E-17 104.4 6.8 74 15-99 14-94 (115)
351 3tht_A Alkylated DNA repair pr 99.3 2.2E-12 7.5E-17 121.1 9.7 78 104-187 13-97 (345)
352 3egn_A RNA-binding protein 40; 99.3 4.6E-13 1.6E-17 110.6 4.6 83 15-101 43-132 (143)
353 2xnq_A Nuclear polyadenylated 99.3 3.2E-12 1.1E-16 98.3 8.9 79 10-99 15-95 (97)
354 1x5p_A Negative elongation fac 99.3 6.3E-12 2.2E-16 96.5 10.1 76 15-102 13-90 (97)
355 2kvi_A Nuclear polyadenylated 99.3 2.8E-12 9.5E-17 98.4 7.6 79 13-102 6-86 (96)
356 2i2y_A Fusion protein consists 99.3 1.9E-12 6.3E-17 107.8 7.0 76 15-99 71-148 (150)
357 2hzc_A Splicing factor U2AF 65 99.3 2.8E-12 9.5E-17 96.3 7.1 72 14-95 3-86 (87)
358 3s6e_A RNA-binding protein 39; 99.3 6.7E-12 2.3E-16 99.3 9.6 78 107-188 5-92 (114)
359 1sjr_A Polypyrimidine tract-bi 99.3 4.5E-12 1.5E-16 106.1 9.0 77 16-100 45-125 (164)
360 2voo_A Lupus LA protein; RNA-b 99.3 4.2E-12 1.4E-16 110.3 9.1 79 16-99 108-187 (193)
361 3ue2_A Poly(U)-binding-splicin 99.3 1.1E-11 3.9E-16 98.6 9.0 84 14-97 17-107 (118)
362 3zzy_A Polypyrimidine tract-bi 99.3 1.5E-11 5.2E-16 99.1 9.5 76 16-100 27-107 (130)
363 2dit_A HIV TAT specific factor 99.3 3E-11 1E-15 95.4 11.0 87 13-103 11-106 (112)
364 2bz2_A Negative elongation fac 99.3 1.4E-11 4.9E-16 98.7 8.6 75 15-101 37-113 (121)
365 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.7E-11 5.6E-16 94.7 8.3 66 31-101 27-92 (100)
366 2diu_A KIAA0430 protein; struc 99.2 3.4E-11 1.1E-15 90.5 8.5 77 16-102 7-87 (96)
367 1owx_A Lupus LA protein, SS-B, 99.2 5.4E-11 1.8E-15 94.4 9.4 80 105-190 14-97 (121)
368 2e5i_A Heterogeneous nuclear r 99.2 8.1E-11 2.8E-15 94.3 10.4 72 19-100 27-103 (124)
369 3u1l_A PRE-mRNA-splicing facto 99.2 3.2E-11 1.1E-15 107.6 8.3 78 14-101 131-231 (240)
370 3v4m_A Splicing factor U2AF 65 99.2 4.4E-11 1.5E-15 93.3 7.5 84 15-98 3-96 (105)
371 1jmt_A Splicing factor U2AF 35 99.2 1.6E-11 5.4E-16 95.7 4.2 64 32-96 26-103 (104)
372 2dnr_A Synaptojanin-1; RRM dom 99.1 9.9E-11 3.4E-15 87.2 7.4 75 107-190 5-87 (91)
373 3s6e_A RNA-binding protein 39; 99.0 6.5E-10 2.2E-14 87.8 8.6 79 15-97 5-91 (114)
374 3tht_A Alkylated DNA repair pr 99.0 1.9E-10 6.4E-15 108.0 5.2 66 9-84 10-77 (345)
375 3dxb_A Thioredoxin N-terminall 99.0 4.9E-09 1.7E-13 92.7 13.2 68 121-188 141-212 (222)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 7.9E-10 2.7E-14 82.7 6.3 73 106-187 12-93 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 2.9E-08 1E-12 73.8 9.0 78 15-100 5-87 (91)
378 2l9w_A U4/U6 snRNA-associated- 98.7 8.1E-08 2.8E-12 73.2 8.8 72 108-185 20-96 (117)
379 1owx_A Lupus LA protein, SS-B, 98.7 6E-08 2E-12 76.8 7.7 70 15-94 16-91 (121)
380 3dxb_A Thioredoxin N-terminall 98.6 7.8E-08 2.7E-12 84.9 8.4 80 18-97 125-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.6 7.3E-08 2.5E-12 72.0 6.1 78 12-97 10-93 (95)
382 2dhx_A Poly (ADP-ribose) polym 98.2 1.2E-05 4.1E-10 60.8 10.8 76 107-191 6-86 (104)
383 2dhx_A Poly (ADP-ribose) polym 98.1 2E-05 6.9E-10 59.6 8.8 87 16-122 7-99 (104)
384 1wey_A Calcipressin 1; structu 97.9 4.3E-05 1.5E-09 58.0 8.0 75 109-189 5-84 (104)
385 2l9w_A U4/U6 snRNA-associated- 97.8 7.8E-05 2.7E-09 56.9 8.2 69 16-94 20-95 (117)
386 1uw4_A UPF3X; nonsense mediate 97.7 0.00038 1.3E-08 51.9 9.8 78 110-187 2-86 (91)
387 1wey_A Calcipressin 1; structu 97.5 0.00045 1.5E-08 52.4 8.3 80 15-100 3-85 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.4 0.00051 1.8E-08 53.6 7.9 74 106-187 21-95 (119)
389 1whv_A Poly(A)-specific ribonu 97.4 0.00055 1.9E-08 51.1 7.0 54 109-171 16-69 (100)
390 2l08_A Regulator of nonsense t 97.2 0.0012 4.2E-08 49.5 7.6 80 108-187 8-94 (97)
391 3ctr_A Poly(A)-specific ribonu 97.2 0.00061 2.1E-08 51.0 5.4 53 111-172 8-60 (101)
392 1wwh_A Nucleoporin 35, nucleop 96.8 0.006 2.1E-07 47.5 8.6 69 16-95 23-93 (119)
393 3pq1_A Poly(A) RNA polymerase; 96.2 0.0016 5.5E-08 63.1 2.0 67 6-82 42-108 (464)
394 3pq1_A Poly(A) RNA polymerase; 96.1 0.0028 9.6E-08 61.4 3.5 56 109-170 53-108 (464)
395 1whv_A Poly(A)-specific ribonu 96.1 0.015 5E-07 43.4 6.4 53 19-83 17-69 (100)
396 3p3d_A Nucleoporin 53; structu 95.8 0.015 5E-07 46.0 5.7 78 14-96 4-96 (132)
397 3p3d_A Nucleoporin 53; structu 95.5 0.016 5.6E-07 45.7 4.8 77 109-187 7-97 (132)
398 3ctr_A Poly(A)-specific ribonu 95.4 0.017 6E-07 43.1 4.4 51 20-82 8-58 (101)
399 1uw4_A UPF3X; nonsense mediate 94.6 0.12 3.9E-06 38.3 7.1 61 18-82 2-64 (91)
400 2l08_A Regulator of nonsense t 91.7 0.18 6.1E-06 37.6 4.0 63 16-82 8-72 (97)
401 3d45_A Poly(A)-specific ribonu 91.5 0.48 1.7E-05 46.5 8.2 55 109-172 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 83.5 2.3 7.8E-05 29.7 5.5 58 121-187 13-75 (76)
403 4eyt_A Telomerase associated p 76.9 14 0.00049 26.7 7.7 69 108-184 11-86 (129)
404 3d45_A Poly(A)-specific ribonu 75.0 6.4 0.00022 38.4 7.4 44 32-83 450-493 (507)
405 4eyt_A Telomerase associated p 70.4 28 0.00094 25.2 8.1 69 15-95 10-78 (129)
406 3fry_A Probable copper-exporti 59.5 16 0.00054 24.6 4.9 57 108-171 5-61 (73)
407 3lpe_A Putative transcription 57.5 44 0.0015 24.1 7.2 22 62-83 49-70 (92)
408 2ew9_A Copper-transporting ATP 53.9 70 0.0024 24.3 9.8 127 19-171 7-141 (149)
409 2f06_A Conserved hypothetical 52.6 78 0.0027 24.4 10.9 114 34-176 19-135 (144)
410 4e8u_A Putative uncharacterize 49.5 43 0.0015 27.4 6.5 49 110-161 13-72 (172)
411 2lfv_A Protein DAMX; cell divi 51.8 4.3 0.00015 30.7 0.0 51 121-173 34-86 (106)
412 4hhu_A OR280; engineered prote 45.7 64 0.0022 24.5 6.4 99 71-185 11-128 (170)
413 2hiy_A Hypothetical protein; C 45.0 81 0.0028 26.0 7.8 125 19-159 8-144 (183)
414 3bb5_A Stress responsive alpha 43.3 98 0.0033 23.4 7.5 59 110-168 22-91 (121)
415 2cu1_A Mitogen-activated prote 42.3 41 0.0014 24.8 4.7 67 114-189 21-88 (103)
416 3dxs_X Copper-transporting ATP 42.1 55 0.0019 21.5 5.4 56 110-171 4-63 (74)
417 2kjw_A TS9, 30S ribosomal prot 40.2 25 0.00085 25.9 3.4 59 65-133 7-68 (96)
418 3bgu_A Ferredoxin-like protein 38.7 1.1E+02 0.0037 23.0 7.1 58 110-168 23-90 (116)
419 2qyc_A Ferredoxin-like protein 36.4 1.2E+02 0.0041 21.9 6.9 52 114-166 10-71 (103)
420 2l69_A Rossmann 2X3 fold prote 36.4 70 0.0024 23.2 5.1 21 151-171 100-120 (134)
421 2rop_A Copper-transporting ATP 35.5 1.8E+02 0.0061 23.6 12.4 136 19-171 23-183 (202)
422 2ofg_X Zinc-transporting ATPas 35.4 1.3E+02 0.0043 21.9 7.0 57 109-171 9-69 (111)
423 1p6t_A Potential copper-transp 35.2 1.4E+02 0.0049 22.5 12.8 120 18-171 8-135 (151)
424 3lpe_A Putative transcription 35.1 77 0.0026 22.8 5.4 33 136-173 40-72 (92)
425 3zzp_A TS9, ribosomal protein 34.7 57 0.0019 22.8 4.5 59 65-133 7-68 (77)
426 2l3m_A Copper-ION-binding prot 32.3 94 0.0032 19.7 5.3 56 110-171 7-66 (71)
427 3fry_A Probable copper-exporti 32.3 88 0.003 20.5 5.2 54 18-82 7-60 (73)
428 1q4r_A Protein AT3G17210; cent 31.6 1.5E+02 0.0053 21.7 7.2 58 111-168 13-81 (112)
429 1tr0_A Stable protein 1; plant 30.8 1.5E+02 0.005 21.6 6.6 57 111-167 11-80 (108)
430 2lfv_A Protein DAMX; cell divi 36.6 11 0.00037 28.4 0.0 66 13-83 18-84 (106)
431 1yg0_A COP associated protein; 30.0 1E+02 0.0034 19.0 5.5 53 112-170 5-60 (66)
432 2i9x_A Putative septation prot 29.7 51 0.0018 23.7 3.6 26 135-160 5-30 (87)
433 2cvi_A 75AA long hypothetical 29.6 1.4E+02 0.0047 20.5 6.6 51 34-88 14-65 (83)
434 1kvi_A Copper-transporting ATP 28.7 1.2E+02 0.0042 19.7 6.8 58 108-171 8-69 (79)
435 2djw_A Probable transcriptiona 28.4 1.4E+02 0.0046 21.0 5.9 50 34-87 14-64 (92)
436 3h7h_B Transcription elongatio 28.3 90 0.0031 23.2 4.9 37 135-176 40-76 (106)
437 3uzu_A Ribosomal RNA small sub 27.0 42 0.0014 29.7 3.3 34 110-143 115-148 (279)
438 2zbc_A 83AA long hypothetical 26.4 1.5E+02 0.0052 20.0 6.6 51 34-88 14-65 (83)
439 4a4j_A Pacszia, cation-transpo 26.4 80 0.0027 20.2 4.0 55 110-170 4-61 (69)
440 2ia9_A Putative septation prot 26.1 63 0.0022 23.9 3.6 26 135-160 5-30 (100)
441 2cfx_A HTH-type transcriptiona 26.0 2.2E+02 0.0074 21.8 7.2 47 34-84 77-123 (144)
442 3ftd_A Dimethyladenosine trans 25.9 1.3E+02 0.0045 25.8 6.3 34 110-143 96-129 (249)
443 2kpo_A Rossmann 2X2 fold prote 25.8 73 0.0025 22.3 3.6 50 121-183 33-83 (110)
444 2yb5_A FUSC, putative fusidic 24.6 10 0.00035 32.4 -1.2 41 32-84 39-81 (215)
445 3tqs_A Ribosomal RNA small sub 24.3 91 0.0031 27.0 5.0 33 111-143 98-130 (255)
446 2i9z_A Putative septation prot 24.3 72 0.0025 23.8 3.6 26 135-160 5-30 (105)
447 2xmw_A PACS-N, cation-transpor 24.1 1.4E+02 0.0047 18.7 6.0 55 110-170 5-62 (71)
448 2w7a_A LINE-1 ORF1P; RNA-bindi 23.8 1.4E+02 0.0048 22.0 5.1 76 109-185 3-99 (100)
449 3j21_T 50S ribosomal protein L 23.4 92 0.0032 22.3 3.9 51 117-170 30-82 (86)
450 1cpz_A Protein (COPZ); copper 23.4 1.4E+02 0.0047 18.4 7.4 54 111-170 3-60 (68)
451 4e8u_A Putative uncharacterize 23.2 1.1E+02 0.0039 24.9 4.9 54 19-75 14-74 (172)
452 3bn7_A Ferredoxin-like protein 22.7 2.2E+02 0.0075 21.3 6.4 56 111-166 23-91 (120)
453 3bde_A MLL5499 protein; stress 22.6 2.5E+02 0.0084 21.1 6.8 55 112-166 24-86 (120)
454 2op5_A Hypothetical protein; f 22.4 2.1E+02 0.0072 20.2 8.2 71 63-169 11-81 (117)
455 1q8l_A Copper-transporting ATP 22.0 1.8E+02 0.0062 19.3 7.4 57 109-171 10-70 (84)
456 1vd2_A Protein kinase C, IOTA 21.7 1.2E+02 0.0042 21.8 4.3 52 112-170 17-73 (89)
457 2kt2_A Mercuric reductase; nme 21.6 1.6E+02 0.0053 18.4 6.6 54 111-170 3-59 (69)
458 3ilw_A DNA gyrase subunit A; D 21.5 1.8E+02 0.0062 27.8 6.6 63 17-81 236-299 (470)
459 2kgl_A Mesoderm development ca 21.5 1.5E+02 0.0052 24.6 5.3 55 109-170 75-135 (195)
460 2fgc_A Acetolactate synthase, 20.8 3.6E+02 0.012 22.3 9.5 136 18-175 32-170 (193)
461 4ev1_A Anabena TIC22; TIC22 fo 20.5 2.1E+02 0.0072 24.8 6.4 20 65-84 43-62 (252)
462 1y3j_A Copper-transporting ATP 20.2 1.2E+02 0.0041 19.7 4.0 56 110-171 5-64 (77)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.8e-34 Score=249.57 Aligned_cols=177 Identities=35% Similarity=0.621 Sum_probs=152.9
Q ss_pred hccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeE
Q 017735 12 FINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQ 90 (367)
Q Consensus 12 ~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~ 90 (367)
....+.++|||.||++ ++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++||+ +.+.+.++.
T Consensus 8 ~~~~~~~~l~V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSF----ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp CCCGGGGEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCCCCCCEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 3455778999999999 99999999999999999999999999999999999999999999999998 446899999
Q ss_pred EEEeeccCCCCCC--CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 91 VEIKRTIPKGAVG--SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 91 i~v~~~~~~~~~~--~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
|.|.++.+..... ......++|||.|||.++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 9999987664433 23456789999999999999999999999999999999999989999999999999999999999
Q ss_pred HhcCCcccCCeeeEeeecCCCCCCC
Q 017735 169 AKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 169 ~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
+. ++..|+++.|+|+++.++.+..
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HC-SCCEETTEECEEEECC------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhc
Confidence 88 7899999999999999887654
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.7e-34 Score=244.82 Aligned_cols=166 Identities=42% Similarity=0.788 Sum_probs=154.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEe
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 94 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~ 94 (367)
+++++|||.|||. ++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|+++.+.++++.|.+.
T Consensus 1 k~~~~l~v~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~ 76 (167)
T 2cjk_A 1 KESCKMFIGGLNW----DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPK 76 (167)
T ss_dssp CGGGEEEECSCCT----TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCE
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccc
Confidence 4678999999999 999999999999999999999999998999999999999999999999998889999999998
Q ss_pred eccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc
Q 017735 95 RTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 174 (367)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~ 174 (367)
++.+... ..+.++|||.|||.++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++|++ +++.
T Consensus 77 ~~~~~~~----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 151 (167)
T 2cjk_A 77 RAIPRDE----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI 151 (167)
T ss_dssp ECCCHHH----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE
T ss_pred cccchhh----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE
Confidence 8765432 2346799999999999999999999999999999999998899999999999999999999998 7999
Q ss_pred ccCCeeeEeeecCCC
Q 017735 175 ELAGAQVEVKKAEPK 189 (367)
Q Consensus 175 ~~~g~~l~v~~a~~~ 189 (367)
.|++++|+|+++.++
T Consensus 152 ~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 152 DFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSSSSCEEEEECCCC
T ss_pred EeCCeEEEEeecCCC
Confidence 999999999999876
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.2e-33 Score=251.27 Aligned_cols=170 Identities=21% Similarity=0.417 Sum_probs=150.6
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|++++.|+++++||||+|.++++|++||+. ...+.++.|
T Consensus 12 ~~p~~tlfVgnLp~----~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 12 SYPMASLYVGDLHP----DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp ---CCEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCC----CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 45678999999999 999999999999999999999999999999999999999999999999984 457889999
Q ss_pred EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
.+.++...... .....++|||.|||+++++++|+++|++||.|+.|+|+.|. ..+++||||+|+++++|++||++|
T Consensus 88 ~~~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 88 RIMWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EEEECCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 98877554322 22345789999999999999999999999999999999985 447999999999999999999999
Q ss_pred CCcccCCeeeEeeecCCCCC
Q 017735 172 NKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 172 ~g~~~~g~~l~v~~a~~~~~ 191 (367)
|+..|++++|+|++++++.+
T Consensus 164 ng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TTCEETTEECEEEECCCHHH
T ss_pred CCCEECCEEEEEEEcCCCcc
Confidence 99999999999999987643
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.9e-33 Score=247.51 Aligned_cols=177 Identities=22% Similarity=0.421 Sum_probs=156.1
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++. ...|.++.|
T Consensus 25 ~~~~~~l~V~nLp~----~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 100 (216)
T 2qfj_A 25 LAIMSRVYVGSIYY----ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 100 (216)
T ss_dssp HHHHTEEEEECCCT----TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCC
T ss_pred cCcCCEEEEECCCC----CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeE
Confidence 34568999999999 999999999999999999999999998999999999999999999999984 458899999
Q ss_pred EEeeccCCCCCCC-------CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHH
Q 017735 92 EIKRTIPKGAVGS-------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAV 164 (367)
Q Consensus 92 ~v~~~~~~~~~~~-------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a 164 (367)
.|.++........ .....++|||.|||.++++++|+++|++||.|+.|+|+.++.++++++||||+|++.++|
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 9987765532211 234568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccCCeeeEeeecCCCCCCCC
Q 017735 165 DDLLAKGNKLELAGAQVEVKKAEPKKPNLP 194 (367)
Q Consensus 165 ~~Al~~l~g~~~~g~~l~v~~a~~~~~~~~ 194 (367)
++|++.||+..|++++|+|+++.++....+
T Consensus 181 ~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 181 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred HHHHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 999999999999999999999998765543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=230.87 Aligned_cols=164 Identities=20% Similarity=0.355 Sum_probs=150.6
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEee
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKR 95 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~~ 95 (367)
++|+|.|||. ++++++|+++|++||+|.+|+|++++ ++++++||||+|.++++|++|++ +...+.++.|.|.+
T Consensus 1 R~l~V~nlp~----~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDK----AITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEET----TCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCC----cCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 4799999999 99999999999999999999999997 47799999999999999999997 45588999999998
Q ss_pred ccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcc
Q 017735 96 TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~ 175 (367)
+.+... ....+.++|||.|||.++++++|+++|++||.|..+.|+.++.+++++++|||+|.++++|++|++.||+..
T Consensus 76 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 76 AFQSQQ--SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCCCC--CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred cCCCCC--CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 866543 345567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeEeeecCC
Q 017735 176 LAGAQVEVKKAEP 188 (367)
Q Consensus 176 ~~g~~l~v~~a~~ 188 (367)
|++++|+|++|++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999863
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.3e-32 Score=231.19 Aligned_cols=163 Identities=22% Similarity=0.464 Sum_probs=151.7
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
+.++|+|.|||. ++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|++ +...+.++.|.|
T Consensus 2 ~~~~l~v~nlp~----~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQ----DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCT----TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 468999999999 99999999999999999999999999899999999999999999999998 455889999999
Q ss_pred eeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
.++.+... ..+.++|||.|||.++++++|+++|++||.|+.|.|+.++.+++++++|||+|++.++|++|++.||+
T Consensus 78 ~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 78 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp EECCCCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EecCCCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 98876543 34678999999999999999999999999999999999988999999999999999999999999999
Q ss_pred cccCC--eeeEeeec
Q 017735 174 LELAG--AQVEVKKA 186 (367)
Q Consensus 174 ~~~~g--~~l~v~~a 186 (367)
..|.+ ++|+|++|
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99987 99999886
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-31 Score=227.77 Aligned_cols=162 Identities=30% Similarity=0.550 Sum_probs=149.6
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~ 94 (367)
.++|+|.|||. ++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|++ +...+.++.|.|.
T Consensus 2 ~~~l~v~nlp~----~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQ----NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 77 (167)
T ss_dssp CSEEEEESCCT----TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cceEEEcCCCC----CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE
Confidence 57899999999 99999999999999999999999999899999999999999999999998 4558899999999
Q ss_pred eccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc
Q 017735 95 RTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 174 (367)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~ 174 (367)
++.+... ....++|||.|||.++++++|+++|++||.|+.+.|+.++.++++++||||+|+++++|++|++.||+.
T Consensus 78 ~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 78 YARPSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp ECCCCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ecCCCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 8876533 345689999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccCCee--eEeeec
Q 017735 175 ELAGAQ--VEVKKA 186 (367)
Q Consensus 175 ~~~g~~--l~v~~a 186 (367)
.|.++. |+|+||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 888775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=4.9e-31 Score=226.00 Aligned_cols=164 Identities=20% Similarity=0.368 Sum_probs=143.4
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCC--CcceEEEEEeCCHHHHHHHHhhcc--ccC---C
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTG--QPRGFGFVTYADPSVVDKVIEDTH--IIN---G 88 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg--~srG~afV~f~~~~~a~~al~~~~--~i~---g 88 (367)
+.++|||.|||+ ++++++|+++|++||+|.+|+|++++.++ ++++||||+|.++++|++|++.++ .+. .
T Consensus 2 ~~~~l~V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPR----TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCT----TCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 467999999999 99999999999999999999999999876 899999999999999999998543 232 4
Q ss_pred eEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 017735 89 KQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 168 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al 168 (367)
+.+.+..+.+.. ......++|||.|||.++++++|+++|++||.|+.|.|+.++ ++++++||||+|+++++|++|+
T Consensus 78 ~~~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 78 HPIQMKPADSEK---NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp SCCEEEECGGGC---CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred cceEEccccccc---cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 556665554432 234567899999999999999999999999999999999995 6899999999999999999999
Q ss_pred HhcCCcccC---CeeeEeeecC
Q 017735 169 AKGNKLELA---GAQVEVKKAE 187 (367)
Q Consensus 169 ~~l~g~~~~---g~~l~v~~a~ 187 (367)
+.||+..+. +++|+|++|.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998776 4999999974
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=4.7e-31 Score=230.93 Aligned_cols=173 Identities=17% Similarity=0.350 Sum_probs=144.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEE-----EeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCC
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSV-----IMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIING 88 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~-----i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g 88 (367)
...++|||.||++ ++++++|+++|++||+|..+. .+.+..+.++++||||+|.++++|++||+ +.+.|.+
T Consensus 2 ~~~~~l~V~nLp~----~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPF----GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCT----TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred CceeEEEEcCCCC----CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 3578999999999 999999999999995443321 11111234567899999999999999995 4458899
Q ss_pred eEEEEeeccCCCCCC----------------CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCccc
Q 017735 89 KQVEIKRTIPKGAVG----------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRG 152 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~----------------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G 152 (367)
+.|.|.++.+..... ....+.++|||.|||.++++++|+++|++||.|..|.|+.++.++++++
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 999999876553221 1124678999999999999999999999999999999999988999999
Q ss_pred EEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCC
Q 017735 153 FGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
||||+|+++++|++|++.||+..|++++|+|+++.++..
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999987654
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.1e-30 Score=224.39 Aligned_cols=165 Identities=18% Similarity=0.326 Sum_probs=145.5
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
...+.++|||.||+. ++++++|+++|++|+.|.. .++.+..++++++||||+|.++++|++|++ +...+.++.|
T Consensus 9 ~~~~~~~l~V~nLp~----~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 83 (175)
T 1fje_B 9 ESTTPFNLFIGNLNP----NKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 83 (175)
T ss_dssp SCSSSEEEEEECCCT----TSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEE
T ss_pred CCCCCcEEEEeCCCC----CCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEE
Confidence 456788999999999 9999999999999998877 445555678899999999999999999997 4458899999
Q ss_pred EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
.|.++.++.. ....+.++|||.|||.++++++|+++|++|+.|..+ ..++++++||||+|+++++|++|++.|
T Consensus 84 ~v~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 84 KLEKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp EEECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EEecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 9998876543 344567899999999999999999999999988766 467889999999999999999999999
Q ss_pred CCcccCCeeeEeeecCCC
Q 017735 172 NKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 172 ~g~~~~g~~l~v~~a~~~ 189 (367)
|+..|++++|+|+++.++
T Consensus 157 ~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TEEEETTEEEEEEECSSC
T ss_pred CCCEECCeEEEEEecCCC
Confidence 999999999999999875
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.2e-29 Score=217.04 Aligned_cols=159 Identities=20% Similarity=0.418 Sum_probs=141.4
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccC----C-------CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-h
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKY----G-------EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-D 82 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~ 82 (367)
++.++|+|.|||. ++++++|+++|++| + .|.++.+. ++++||||+|.++++|++|++ +
T Consensus 2 r~~~~l~V~nLp~----~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~ 71 (172)
T 2g4b_A 2 GSARRLYVGNIPF----GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFD 71 (172)
T ss_dssp CGGGEEEEESCCT----TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGT
T ss_pred CcccEEEEcCCCc----ccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhC
Confidence 4678999999999 99999999999999 5 55555554 347899999999999999995 4
Q ss_pred ccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHH
Q 017735 83 THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 162 (367)
Q Consensus 83 ~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~ 162 (367)
.+.+.++.|.|.++.+... ....++|||.|||.++++++|+++|++||+|..|.|+.++.++++++||||+|++++
T Consensus 72 ~~~~~g~~i~v~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 72 GIIFQGQSLKIRRPHDYQP----LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp TCEETTEECEEECCSSCCC----CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred CcEecCceeeecCCcccCC----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 4588999999988655432 334789999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhcCCcccCCeeeEeeecC
Q 017735 163 AVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 163 ~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+|++|++.||+..|++++|+|++|.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999873
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=4.8e-29 Score=230.86 Aligned_cols=171 Identities=15% Similarity=0.287 Sum_probs=156.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
....+|+|.||+. ++++++|+++|++||+|.+|+|+.++.++++++||||+|.+.++|++|++ +...+.++.|.
T Consensus 93 ~~~~~l~v~nlp~----~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPP----SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEcCCCC----cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3567899999999 99999999999999999999999999999999999999999999999997 44589999999
Q ss_pred EeeccCCCCCCCCCCCcceEEEeCCCCCC-CHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 93 IKRTIPKGAVGSKDFKTKKIFVGGIPSSV-NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 93 v~~~~~~~~~~~~~~~~~~l~V~~lp~~~-te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
|.++.+.... ....+.++|||.|||.++ ++++|+++|++||.|..|.|+.+. +++++++|||+|+++++|++|++.|
T Consensus 169 v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 246 (284)
T 3smz_A 169 VHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQA 246 (284)
T ss_dssp EEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHH
T ss_pred EEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHh
Confidence 9998776433 344577899999999995 999999999999999999999986 7899999999999999999999999
Q ss_pred CCcccCCeeeEeeecCCCCC
Q 017735 172 NKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 172 ~g~~~~g~~l~v~~a~~~~~ 191 (367)
|+..|.+++|+|+++.++.+
T Consensus 247 ~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 247 DGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp TTCEETTEECEEEECCSSSC
T ss_pred CCCccCCeEEEEEEecCCCc
Confidence 99999999999999987764
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.1e-29 Score=222.30 Aligned_cols=160 Identities=16% Similarity=0.266 Sum_probs=136.7
Q ss_pred cccceEeccCC-CCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 16 QTTTQKMTGLS-LTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 16 ~~~~~~v~~L~-~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
+.++|||.||+ + ++++++|+++|++||+|.+|+|+++ ++|||||+|.++++|++||+. ...+.++.|.
T Consensus 3 ~~~~l~V~nL~~~----~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 3 DSPVLMVYGLDQS----KMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCSEEEEECCCTT----TCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCcc----cCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 56799999999 7 8999999999999999999999875 368999999999999999984 4589999999
Q ss_pred EeeccCCCCCCC---------------------------------CCCCcceEEEeCCCCCCCHHHHHHhhccCCce--e
Q 017735 93 IKRTIPKGAVGS---------------------------------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDV--Q 137 (367)
Q Consensus 93 v~~~~~~~~~~~---------------------------------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v--~ 137 (367)
|.++..+...+. ...+.++|||.|||++++|++|+++|++||.| .
T Consensus 74 v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~ 153 (205)
T 3tyt_A 74 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPT 153 (205)
T ss_dssp EEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS
T ss_pred EEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceE
Confidence 998753221000 01345689999999999999999999999999 8
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCe----eeEeeec
Q 017735 138 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA----QVEVKKA 186 (367)
Q Consensus 138 ~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~----~l~v~~a 186 (367)
.|+|+.++ +.++++|||+|++.++|.+||+.||+.+|.++ ++.|+++
T Consensus 154 ~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99998874 45679999999999999999999999999876 6777765
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=7.5e-29 Score=229.30 Aligned_cols=163 Identities=17% Similarity=0.291 Sum_probs=142.6
Q ss_pred ccccccceEeccCCCCCCchhhHHHHH----HhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--ccc
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFI----KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HII 86 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i 86 (367)
..++.++|||.||+. ++++++|+ ++|++||+|++|+|++ ++++++||||+|.+.++|++||+.+ ..|
T Consensus 5 ~~~~~~~l~V~nlp~----~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 5 ETRPNHTIYINNLNE----KIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 456788999999999 89999966 8999999999999986 6779999999999999999999844 588
Q ss_pred CCeEEEEeeccCCCCC----------------------------------------------------------------
Q 017735 87 NGKQVEIKRTIPKGAV---------------------------------------------------------------- 102 (367)
Q Consensus 87 ~g~~i~v~~~~~~~~~---------------------------------------------------------------- 102 (367)
.++.|.|.++......
T Consensus 78 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 78 YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 9999999887554320
Q ss_pred -------------------------------------------CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEE
Q 017735 103 -------------------------------------------GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH 139 (367)
Q Consensus 103 -------------------------------------------~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v 139 (367)
.....+.++|||.|||.++++++|+++|++||.|++|
T Consensus 158 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v 237 (282)
T 3pgw_A 158 PGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEE
Confidence 0122356789999999999999999999999999999
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC-CeeeEeeecC
Q 017735 140 QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAE 187 (367)
Q Consensus 140 ~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~-g~~l~v~~a~ 187 (367)
+|+.++ ++||||+|++.++|++||+.||+..|. +++|+|+|++
T Consensus 238 ~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 238 RLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999764 589999999999999999999999999 9999999986
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=8.8e-29 Score=229.96 Aligned_cols=168 Identities=16% Similarity=0.239 Sum_probs=143.8
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
+.++|+|.||+. ++++++|+++|++|| +|.+|.|++++. +++++||||+|.+.++|++|++ +.+.+.++.|.
T Consensus 116 ~~~~l~v~nlp~----~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 116 TECTLWMTNFPP----SYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp CSCEEEEECCCT----TCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEECCCC----CCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 467999999999 999999999999999 999999999875 7899999999999999999999 44589999999
Q ss_pred EeeccCCCCCC---CCCCCcceEEEeCCCCC-CCHHHHHHhhccCCceeEEEEeeCCC-CCCcccEEEEEeCCHHHHHHH
Q 017735 93 IKRTIPKGAVG---SKDFKTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHS-TSRSRGFGFITFDTEQAVDDL 167 (367)
Q Consensus 93 v~~~~~~~~~~---~~~~~~~~l~V~~lp~~-~te~~L~~~f~~~G~v~~v~i~~~~~-~g~~~G~afV~F~~~~~a~~A 167 (367)
|.++.+..... ....+.++|||.|||.+ +++++|+++|++||.|+.|+|+.+.. |+++++||||+|.++++|++|
T Consensus 191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp EEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHH
T ss_pred EEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH
Confidence 99987765433 23456789999999999 99999999999999999999999876 589999999999999999999
Q ss_pred HHhcCCcccCCeeeEeeecCCC
Q 017735 168 LAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 168 l~~l~g~~~~g~~l~v~~a~~~ 189 (367)
+ .||+..|.+++|+|.++.++
T Consensus 271 ~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp G-GGTTEEETTEEEEEEECCCC
T ss_pred H-HhcCCEECCcEEEEEEecCC
Confidence 9 99999999999999999876
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=8.4e-28 Score=215.82 Aligned_cols=162 Identities=17% Similarity=0.278 Sum_probs=140.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.+.++|||.||++. ++++++|+++|++||+|++|+|++++ ++||||+|.++++|++|++ +...+.++.|.
T Consensus 32 ~~~~~l~V~nLp~~---~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPE---RVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTT---TCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCEEEEeCCCcc---cCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 45679999999851 57899999999999999999999875 6799999999999999998 44588999999
Q ss_pred EeeccCCCCCCC-------------------------------CCCCcceEEEeCCCCCCCHHHHHHhhccCC-ceeEEE
Q 017735 93 IKRTIPKGAVGS-------------------------------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQ 140 (367)
Q Consensus 93 v~~~~~~~~~~~-------------------------------~~~~~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~ 140 (367)
|.++.+...... ...+.++|||.|||.++++++|+++|++|| .|..|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 988765421110 123468999999999999999999999999 999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC-CeeeEeeecCCC
Q 017735 141 IMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAEPK 189 (367)
Q Consensus 141 i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~-g~~l~v~~a~~~ 189 (367)
|+.+ .++||||+|++.++|++|++.||+..|. +++|+|++++++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9764 3789999999999999999999999999 999999998864
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.9e-27 Score=220.03 Aligned_cols=156 Identities=14% Similarity=0.284 Sum_probs=143.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
++.++|+|.|||. ++++++|+++|++|| |.+|.+ .++++||||+|.++++|++|++ +...+.++.|.
T Consensus 20 ~~~~~l~V~nLp~----~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 88 (284)
T 3smz_A 20 RNRRKILIRGLPG----DVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELS 88 (284)
T ss_dssp HCCCEEEEECCCT----TCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEE
Confidence 4678999999999 999999999999999 988888 3467899999999999999998 44588999999
Q ss_pred EeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 93 IKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 93 v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
|.++. ..++|||.|||.++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++|++.|+
T Consensus 89 v~~~~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 89 VQLQP----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp EEECC----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEecC----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 98743 34799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCeeeEeeecCCCCC
Q 017735 173 KLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 173 g~~~~g~~l~v~~a~~~~~ 191 (367)
+..|.+++|.|.++.++..
T Consensus 159 ~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp TCEETTEECEEEECCGGGC
T ss_pred CCEeCCcEEEEEECCCCCC
Confidence 9999999999999987654
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=7.8e-28 Score=223.57 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=138.0
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
..++.++|+|.|||+ ++++++|+++|++||+|.+|+|++++.+ +++||||+|.++++|++|++ +...+.++.|
T Consensus 37 ~~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 110 (292)
T 2ghp_A 37 RNRELTTVLVKNLPK----SYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEI 110 (292)
T ss_dssp -----CEEEEEEECT----TCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred cCCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEE
Confidence 345678999999999 9999999999999999999999998743 58999999999999999997 4458899999
Q ss_pred EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
.|.++ +.++|||.|||.++++++|+++|++|| .|..|.|+.++. +++++||||+|.++++|++|++.
T Consensus 111 ~v~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 111 IVSHL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp EEEEC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHH
T ss_pred EEEEC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHH
Confidence 99875 468999999999999999999999999 999999998865 78899999999999999999999
Q ss_pred cCCcccCCeeeEeeecCCCCC
Q 017735 171 GNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 171 l~g~~~~g~~l~v~~a~~~~~ 191 (367)
||+..|.+++|.|.++.++..
T Consensus 179 l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 179 LNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HTTCEETTEECEEEECCCC--
T ss_pred hCCCEeCCcEEEEEECCCCcc
Confidence 999999999999999887654
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=1.1e-27 Score=209.76 Aligned_cols=160 Identities=17% Similarity=0.286 Sum_probs=138.6
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~ 94 (367)
.++|+|.||+.. ++++++|+++|++||+|.+|+|++++ ++||||+|.++++|++|++ +...+.++.|.|.
T Consensus 3 ~~~l~v~nlp~~---~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPE---RVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSS---SCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcc---cCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 578999999861 47899999999999999999999875 6799999999999999998 4458899999998
Q ss_pred eccCCCCCC-------------------------------CCCCCcceEEEeCCCCCCCHHHHHHhhccCC-ceeEEEEe
Q 017735 95 RTIPKGAVG-------------------------------SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIM 142 (367)
Q Consensus 95 ~~~~~~~~~-------------------------------~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~i~ 142 (367)
++.+..... ....+.++|||.|||.++++++|+++|++|| .|..|+|+
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 876442110 0123478999999999999999999999999 99999997
Q ss_pred eCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC-CeeeEeeecCCC
Q 017735 143 RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEVKKAEPK 189 (367)
Q Consensus 143 ~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~-g~~l~v~~a~~~ 189 (367)
.+. +++|||+|+++++|++|++.||+..|. +++|+|++++++
T Consensus 155 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp STT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 652 789999999999999999999999999 999999998764
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=5.9e-27 Score=214.44 Aligned_cols=156 Identities=22% Similarity=0.383 Sum_probs=139.9
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
+.++|||.||++ ++|+++|+++|++||+|.+|+|+++ ++||||+|.+.++|++|++ +...|.++.|.|
T Consensus 21 ~~~~l~V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 21 QRCRLFVGNLPT----DITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp GGGEEEEESCCT----TCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEECCCC----CCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 456899999999 9999999999999999999999754 5799999999999999998 445889999999
Q ss_pred eeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC-
Q 017735 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN- 172 (367)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~- 172 (367)
.++.+ .++|||.|||..+|+++|+++|++||.|+.|.|+.+ .++++++||||+|.+.++|.+||+.||
T Consensus 91 ~~a~~----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 91 RFATH----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp EECCC----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eeccc----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 98753 578999999999999999999999999999999999 589999999999999999999999995
Q ss_pred CcccC---CeeeEeeecCCCCCC
Q 017735 173 KLELA---GAQVEVKKAEPKKPN 192 (367)
Q Consensus 173 g~~~~---g~~l~v~~a~~~~~~ 192 (367)
+..+. +++|.|+++.+..+.
T Consensus 160 ~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SCEESSSSCCBCEEEECCCEESS
T ss_pred CeEEecCCCceEEEeeccccCcc
Confidence 44444 899999998876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=2e-24 Score=182.47 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=114.9
Q ss_pred EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc---ccCCeEE------EEeeccCC--CCCCCCCCCcceEEEeCCC
Q 017735 50 DSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH---IINGKQV------EIKRTIPK--GAVGSKDFKTKKIFVGGIP 118 (367)
Q Consensus 50 ~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~---~i~g~~i------~v~~~~~~--~~~~~~~~~~~~l~V~~lp 118 (367)
.++|+.+.. +++||+||+|.++++|++|++.++ .+++... ........ ..........++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467777764 699999999999999999997432 2333222 11111111 1222344567899999999
Q ss_pred CCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCCC
Q 017735 119 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 119 ~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
+++++++|+++|++||.|+.|.|+.|+.++++++||||+|++.++|++||+.||+..|.+++|+|++++++.+..
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876543
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.1e-21 Score=164.27 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=108.8
Q ss_pred CCcceEEEEEeCCHHHHHHHHhhc---cccCCeEEEEeeccCCC------------CCCCCCCCcceEEEeCCCCCCCHH
Q 017735 60 GQPRGFGFVTYADPSVVDKVIEDT---HIINGKQVEIKRTIPKG------------AVGSKDFKTKKIFVGGIPSSVNED 124 (367)
Q Consensus 60 g~srG~afV~f~~~~~a~~al~~~---~~i~g~~i~v~~~~~~~------------~~~~~~~~~~~l~V~~lp~~~te~ 124 (367)
.+.+|+++|+|.+.++|++|++.+ ..+++ .+.+..+..+. .......+.++|||+|||++++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999744 48889 88887765421 223345677899999999999999
Q ss_pred HHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 125 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 125 ~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
+|+++|++||.|+.|+|+.+ +++||||+|.+.++|++||+.||+..|.+++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999877 58999999999999999999999999999999999998763
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=4.9e-22 Score=194.04 Aligned_cols=89 Identities=16% Similarity=0.380 Sum_probs=83.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+.||+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.+++|.|
T Consensus 97 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 97 AQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
+++.++...
T Consensus 177 ~~a~~~~~~ 185 (437)
T 3pgw_S 177 DVERGRTVK 185 (437)
T ss_pred EEeCCCCCC
Confidence 999876543
No 24
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.1e-21 Score=161.35 Aligned_cols=125 Identities=19% Similarity=0.275 Sum_probs=85.6
Q ss_pred EEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeC
Q 017735 65 FGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD 144 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~ 144 (367)
++|+++++...+..|++.+. +....-.........+....+.++|||.|||+++++++|+++|++||+|+.|.|+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~---g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMT---GGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp --------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred cccccccCCCchhhhhhhcc---CCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 45666666666677776443 222111112222333445566789999999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCC
Q 017735 145 HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 192 (367)
Q Consensus 145 ~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 192 (367)
+.++++++||||+|++.++|++||+.||+..|.+++|+|++++++.+.
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 989999999999999999999999999999999999999999876544
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=149.32 Aligned_cols=83 Identities=25% Similarity=0.560 Sum_probs=79.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||+|||.++|+++|+++|++||+|+.|+|++|+.++++++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 017735 186 AEP 188 (367)
Q Consensus 186 a~~ 188 (367)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=5.2e-21 Score=161.23 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=81.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||++.|++++|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
+++++.+
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987543
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=146.99 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=80.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.+.++|||+|||++++|++|+++|++||+|++|+|+.|+.|++++|||||+|++.++|++||+.||+..|.+++|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 017735 187 EPKK 190 (367)
Q Consensus 187 ~~~~ 190 (367)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7653
No 28
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=4.6e-20 Score=147.26 Aligned_cols=91 Identities=19% Similarity=0.428 Sum_probs=84.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||.|+.|+|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 017735 184 KKAEPKKPNLP 194 (367)
Q Consensus 184 ~~a~~~~~~~~ 194 (367)
++++++....+
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99998776544
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.9e-19 Score=143.59 Aligned_cols=90 Identities=22% Similarity=0.484 Sum_probs=84.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||.|+.|+|+.++.++++++||||+|+++++|++||+.||+..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
++++++.+..
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999876553
No 30
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=142.93 Aligned_cols=90 Identities=20% Similarity=0.380 Sum_probs=84.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
++++++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998876543
No 31
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=141.06 Aligned_cols=89 Identities=44% Similarity=0.765 Sum_probs=82.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+ ||+..|++++|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345677999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
+++.++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999876554
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=143.49 Aligned_cols=91 Identities=23% Similarity=0.362 Sum_probs=84.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|++++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 017735 184 KKAEPKKPNLP 194 (367)
Q Consensus 184 ~~a~~~~~~~~ 194 (367)
++++++.+...
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dnm_A 88 QVARYGRRDLS 98 (103)
T ss_dssp EECSSCCSCCC
T ss_pred EECCcCCCCCC
Confidence 99988765443
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=141.01 Aligned_cols=87 Identities=21% Similarity=0.359 Sum_probs=82.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
++++.+.
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987654
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=143.91 Aligned_cols=83 Identities=24% Similarity=0.534 Sum_probs=77.4
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc-CCcccCCeeeEeeec
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQVEVKKA 186 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l-~g~~~~g~~l~v~~a 186 (367)
+++|||+|||.++||++|+++|++|| +|++|+|++|+.++++++||||+|+++++|++||+.+ +...|++++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999987 567899999999999
Q ss_pred CCCCC
Q 017735 187 EPKKP 191 (367)
Q Consensus 187 ~~~~~ 191 (367)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=139.25 Aligned_cols=86 Identities=29% Similarity=0.559 Sum_probs=81.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 017735 187 EPKKPN 192 (367)
Q Consensus 187 ~~~~~~ 192 (367)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877543
No 36
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=5.6e-20 Score=156.39 Aligned_cols=89 Identities=21% Similarity=0.380 Sum_probs=81.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+.+++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.||+..|.+++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 017735 185 KAEPKKPNL 193 (367)
Q Consensus 185 ~a~~~~~~~ 193 (367)
++.++.+..
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 998876543
No 37
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=142.59 Aligned_cols=89 Identities=30% Similarity=0.561 Sum_probs=82.1
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
...+.+.++|||.|||+++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+.|+. .|.+++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred eeecCCCCCC
Q 017735 183 VKKAEPKKPN 192 (367)
Q Consensus 183 v~~a~~~~~~ 192 (367)
|+++.++..+
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999866443
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=141.44 Aligned_cols=90 Identities=27% Similarity=0.484 Sum_probs=83.9
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
.....+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 017735 183 VKKAEPKKPN 192 (367)
Q Consensus 183 v~~a~~~~~~ 192 (367)
|++++++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999887654
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=141.77 Aligned_cols=90 Identities=27% Similarity=0.513 Sum_probs=83.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 017735 185 KAEPKKPNLP 194 (367)
Q Consensus 185 ~a~~~~~~~~ 194 (367)
+++++....+
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9988765543
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=142.33 Aligned_cols=83 Identities=19% Similarity=0.383 Sum_probs=76.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCc--eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc----ccCCe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGD--VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL----ELAGA 179 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~--v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~----~~~g~ 179 (367)
....+||||+|||+++|+++|+++|++||. |.+|+|++|+.+++++|||||+|+++++|++||+.||+. .|+++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 446789999999999999999999999995 679999999999999999999999999999999999886 48999
Q ss_pred eeEeeecCC
Q 017735 180 QVEVKKAEP 188 (367)
Q Consensus 180 ~l~v~~a~~ 188 (367)
+|.|++|++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999875
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=141.80 Aligned_cols=88 Identities=32% Similarity=0.590 Sum_probs=82.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 017735 185 KAEPKKPN 192 (367)
Q Consensus 185 ~a~~~~~~ 192 (367)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99887654
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=141.84 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=83.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC------CcccC
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN------KLELA 177 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~------g~~~~ 177 (367)
....+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345568899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeeeEeeecCCCCCCC
Q 017735 178 GAQVEVKKAEPKKPNL 193 (367)
Q Consensus 178 g~~l~v~~a~~~~~~~ 193 (367)
+++|+|+++.++.+..
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999998876544
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=140.95 Aligned_cols=91 Identities=26% Similarity=0.445 Sum_probs=84.3
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeC-CCCCCcccEEEEEeCCHHHHHHHHHhc-CCcccCCee
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRD-HSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQ 180 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~-~~~g~~~G~afV~F~~~~~a~~Al~~l-~g~~~~g~~ 180 (367)
.....+.++|||.|||+++++++|+++|++||+|+.|.|+.+ +.++++++||||+|+++++|++||+.| |+..|.+++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567899999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred eEeeecCCCCCCC
Q 017735 181 VEVKKAEPKKPNL 193 (367)
Q Consensus 181 l~v~~a~~~~~~~ 193 (367)
|+|++++++.+..
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=139.22 Aligned_cols=88 Identities=15% Similarity=0.438 Sum_probs=81.9
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
.....+.++|||.|||.++++++|+++|++||+|+.|+|+.++ ++++++||||+|+++++|++||+.||+..|++++|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678899999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 017735 183 VKKAEPKKP 191 (367)
Q Consensus 183 v~~a~~~~~ 191 (367)
|++++++.+
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987654
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=139.70 Aligned_cols=89 Identities=19% Similarity=0.442 Sum_probs=82.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||+|+.|.|+.+ ++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557899999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 017735 184 KKAEPKKPNLP 194 (367)
Q Consensus 184 ~~a~~~~~~~~ 194 (367)
++++++.+...
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2d9p_A 88 ALAQRKEERQS 98 (103)
T ss_dssp EECSSCCCCCC
T ss_pred EEecccccCCC
Confidence 99998776543
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.9e-20 Score=141.78 Aligned_cols=84 Identities=17% Similarity=0.358 Sum_probs=73.0
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCC--ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G--~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
.+|||+|||+++++++|+++|++|| .|.+|+|+.|+.+++++|||||+|++.++|++||+.||+..|++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 017735 188 PKKPNL 193 (367)
Q Consensus 188 ~~~~~~ 193 (367)
++.+..
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876554
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=3.5e-19 Score=139.62 Aligned_cols=89 Identities=21% Similarity=0.378 Sum_probs=82.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC---ee
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG---AQ 180 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g---~~ 180 (367)
....+.++|||.|||.++++++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||+..|.+ ++
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568999999999999999999999999999999999997 78999999999999999999999999999998 99
Q ss_pred eEeeecCCCCCCC
Q 017735 181 VEVKKAEPKKPNL 193 (367)
Q Consensus 181 l~v~~a~~~~~~~ 193 (367)
|+|++++++.+..
T Consensus 89 l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 89 LVVKFADTDKESG 101 (105)
T ss_dssp CEEEESCSSCCCS
T ss_pred EEEEECccCcccC
Confidence 9999999877654
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2.3e-19 Score=134.38 Aligned_cols=82 Identities=23% Similarity=0.494 Sum_probs=78.7
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
+.+|||+|||.++++++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|++.||+..|.+++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 017735 189 KK 190 (367)
Q Consensus 189 ~~ 190 (367)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=139.66 Aligned_cols=87 Identities=20% Similarity=0.374 Sum_probs=80.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~---~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
.+.++|||.|||+++++++|+++|++||+|+.|.|+.++. ++++++||||+|.++++|++||+.||+..|.+++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
++++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876544
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=138.78 Aligned_cols=86 Identities=29% Similarity=0.455 Sum_probs=81.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v-~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
.+.++|||.|||.++++++|+++|++||.|+.| +|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9877643
No 51
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=136.00 Aligned_cols=83 Identities=22% Similarity=0.455 Sum_probs=77.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.+.++|||.|||.++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++|++.||+..|++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCC
Q 017735 187 EPK 189 (367)
Q Consensus 187 ~~~ 189 (367)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.3e-19 Score=140.87 Aligned_cols=89 Identities=24% Similarity=0.472 Sum_probs=82.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc---CCee
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL---AGAQ 180 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~---~g~~ 180 (367)
..+.+.++|||.|||.++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+.||+..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999887 8999
Q ss_pred eEeeecCCCCCC
Q 017735 181 VEVKKAEPKKPN 192 (367)
Q Consensus 181 l~v~~a~~~~~~ 192 (367)
|+|++++++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999887654
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=5.8e-19 Score=137.97 Aligned_cols=86 Identities=20% Similarity=0.417 Sum_probs=80.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+++++++|+++|++|+ |+.|+|+.++.++++++||||+|+++++|++|| +||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 455678999999999999999999999996 999999999999999999999999999999999 899999999999999
Q ss_pred ecCCCCCC
Q 017735 185 KAEPKKPN 192 (367)
Q Consensus 185 ~a~~~~~~ 192 (367)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876654
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=141.01 Aligned_cols=88 Identities=18% Similarity=0.404 Sum_probs=82.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 017735 184 KKAEPKKP 191 (367)
Q Consensus 184 ~~a~~~~~ 191 (367)
++++++.+
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99987654
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=139.10 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=80.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+++++++|+++|++||+|+.|+|+.++ ++++++||||+|+++++|++||+.||+..|++++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999997 58999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 017735 185 KAEPKKPN 192 (367)
Q Consensus 185 ~a~~~~~~ 192 (367)
+++...+.
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 98865544
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=136.08 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=79.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++|++.||+..|.+++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 017735 184 KKAE 187 (367)
Q Consensus 184 ~~a~ 187 (367)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 57
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=141.50 Aligned_cols=89 Identities=25% Similarity=0.413 Sum_probs=83.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCcee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcc
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~--------~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~ 175 (367)
....+.++|||.|||.++++++|+++|++||.|+ .|+|+.++.++++++||||+|+++++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred cCCeeeEeeecCCCCCC
Q 017735 176 LAGAQVEVKKAEPKKPN 192 (367)
Q Consensus 176 ~~g~~l~v~~a~~~~~~ 192 (367)
|.+++|+|++++++.+.
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887654
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9e-19 Score=136.81 Aligned_cols=89 Identities=25% Similarity=0.470 Sum_probs=81.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||.|+.|+|+.++. .+++||||+|+++++|++||+.||+..|++++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456779999999999999999999999999999999999864 38999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 017735 184 KKAEPKKPNLP 194 (367)
Q Consensus 184 ~~a~~~~~~~~ 194 (367)
++++++....+
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cq3_A 88 NNATARVMTNS 98 (103)
T ss_dssp EECCSSCCCCC
T ss_pred EEcccCCCCCC
Confidence 99998776544
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=145.85 Aligned_cols=90 Identities=22% Similarity=0.472 Sum_probs=83.7
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
.......++|||+|||.++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+.||+..|.++.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 017735 183 VKKAEPKKPN 192 (367)
Q Consensus 183 v~~a~~~~~~ 192 (367)
|++++++...
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=136.50 Aligned_cols=85 Identities=22% Similarity=0.443 Sum_probs=80.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++|++.||+..|++++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 017735 184 KKAEP 188 (367)
Q Consensus 184 ~~a~~ 188 (367)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 61
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2.7e-19 Score=134.63 Aligned_cols=82 Identities=28% Similarity=0.549 Sum_probs=78.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||.|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++|++.||+..|.+++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cC
Q 017735 186 AE 187 (367)
Q Consensus 186 a~ 187 (367)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=140.50 Aligned_cols=85 Identities=31% Similarity=0.516 Sum_probs=80.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||+|||.++++++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||+..|.+++|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 017735 186 AEPKKP 191 (367)
Q Consensus 186 a~~~~~ 191 (367)
++++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=138.18 Aligned_cols=86 Identities=23% Similarity=0.457 Sum_probs=80.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~-g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
...+.++|||.|||+++++++|+++|++|| |+.|.|+.++.+ +++++||||+|+++++|++|| .||+..|.+++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 999999999887 999999999999999999999 99999999999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
+++.++.+.
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999887653
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=139.74 Aligned_cols=89 Identities=33% Similarity=0.623 Sum_probs=83.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
..+.+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+. ++..|++++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
+++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998776543
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=2.9e-19 Score=144.90 Aligned_cols=89 Identities=18% Similarity=0.396 Sum_probs=83.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.++.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
+++.++.+.
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999877654
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=4.6e-19 Score=144.41 Aligned_cols=87 Identities=24% Similarity=0.465 Sum_probs=82.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+.||+..|++++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
+++++.+
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987654
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=136.47 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=80.8
Q ss_pred CCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 102 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE--------HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 102 ~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~--------v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
......+.++|||+|||.++++++|+++|++||.|+. |+|+.++.++++++||||+|++.++|++|++.||+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445667899999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccCCeeeEeeecC
Q 017735 174 LELAGAQVEVKKAE 187 (367)
Q Consensus 174 ~~~~g~~l~v~~a~ 187 (367)
..|.+++|+|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=5.8e-19 Score=136.12 Aligned_cols=85 Identities=21% Similarity=0.388 Sum_probs=80.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
++++|||+|||.++++++|+++|++||.|+.|+|+.++.++++++||||+|++.++|++|++.||+..|+++.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 017735 188 PKKPN 192 (367)
Q Consensus 188 ~~~~~ 192 (367)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87654
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=138.91 Aligned_cols=88 Identities=30% Similarity=0.560 Sum_probs=82.5
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
+....+.++|||+|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++|++.||+..|.+++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCC
Q 017735 183 VKKAEPKK 190 (367)
Q Consensus 183 v~~a~~~~ 190 (367)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.5e-19 Score=136.89 Aligned_cols=86 Identities=23% Similarity=0.450 Sum_probs=80.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhcc-CCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcc-cCCeeeEe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQ-FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAGAQVEV 183 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~-~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~-~~g~~l~v 183 (367)
..+.++|||.|||+++++++|+++|++ ||.|+.|.|+.++ ++++++||||+|+++++|++||+.||+.. |++++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
+++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876654
No 71
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=5.6e-19 Score=139.72 Aligned_cols=88 Identities=22% Similarity=0.390 Sum_probs=82.7
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||.++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.||+..|.+++|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 017735 184 KKAEPKKP 191 (367)
Q Consensus 184 ~~a~~~~~ 191 (367)
+++.++.+
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987654
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=137.00 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=80.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCcee-EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee---
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ-EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ--- 180 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~-~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~--- 180 (367)
...+.++|||.|||.++++++|+++|++||+|+ .|+|+.++.++++++||||+|+++++|++|++.||+..|.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -eEeeecCCCC
Q 017735 181 -VEVKKAEPKK 190 (367)
Q Consensus 181 -l~v~~a~~~~ 190 (367)
|+|+++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 73
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.8e-20 Score=165.63 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=78.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCC--ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G--~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..++|||+|||+++||++|+++|++|| +|++|+|+.|+.++++++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 017735 186 AEPKK 190 (367)
Q Consensus 186 a~~~~ 190 (367)
++++.
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 74
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=5.7e-19 Score=140.92 Aligned_cols=83 Identities=25% Similarity=0.513 Sum_probs=76.0
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
..+|||+|||+++++++|+++|++||+|++|+|+.|+ ..+++||||+|+++++|++||++||+..|++++|+|+++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999985 44799999999999999999999999999999999999987
Q ss_pred CCCCC
Q 017735 189 KKPNL 193 (367)
Q Consensus 189 ~~~~~ 193 (367)
+.+..
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 75
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=134.95 Aligned_cols=87 Identities=21% Similarity=0.391 Sum_probs=79.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||+|+.|+|+.++.+ +++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34557799999999999999999999999999999999998544 6899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
++++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999886544
No 76
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=3.6e-19 Score=142.10 Aligned_cols=103 Identities=14% Similarity=0.316 Sum_probs=71.4
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 94 (367)
.++|||.||++ ++++++|+++|++||+|++|+|++++ ..+|+||||+|.++++|++||+. .+.|+++.|.|.
T Consensus 5 ~~~lfV~nLp~----~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDK----SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp CCEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEECCCCC----CCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 56899999999 99999999999999999999999986 35899999999999999999984 458999999999
Q ss_pred eccCCCCCCC----CCCCcceEEEeCCCCCCCHHH
Q 017735 95 RTIPKGAVGS----KDFKTKKIFVGGIPSSVNEDE 125 (367)
Q Consensus 95 ~~~~~~~~~~----~~~~~~~l~V~~lp~~~te~~ 125 (367)
++.++..... ...+.++|||.|||.++|++.
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 79 RFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESSCCCC----------------------------
T ss_pred ECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 9877654322 334456899999999999874
No 77
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=141.37 Aligned_cols=86 Identities=31% Similarity=0.651 Sum_probs=80.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.++++|++||+. ++..|++++|+|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887654
No 78
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=133.45 Aligned_cols=85 Identities=15% Similarity=0.426 Sum_probs=78.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCC-cccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR-SRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~-~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
.+.++|||.|||.++++++|+++|++||.|..|.|+.++.+.. +++||||+|+++++|++|++.||+..|+++.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999887666 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 017735 186 AEPKKP 191 (367)
Q Consensus 186 a~~~~~ 191 (367)
+.++.+
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 976543
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=135.49 Aligned_cols=85 Identities=15% Similarity=0.438 Sum_probs=77.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||.++++++|+++|++||.|+.|+|+.+ .++++||||+|+++++|++||+.||+..|++++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34557789999999999999999999999999999999654 457999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 017735 184 KKAEPKKP 191 (367)
Q Consensus 184 ~~a~~~~~ 191 (367)
++++++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99987654
No 80
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=133.82 Aligned_cols=88 Identities=26% Similarity=0.483 Sum_probs=80.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+. .+.|+++.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 3456778999999999999999999999999999999999999999999999999999999999995 67899999999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
+++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9999876543
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1e-18 Score=140.03 Aligned_cols=83 Identities=20% Similarity=0.444 Sum_probs=78.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+++++++|+++|++||+|+.|+|+.++.++++++||||+|++.++|++||+.||+..|++++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 017735 185 KAE 187 (367)
Q Consensus 185 ~a~ 187 (367)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 82
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=136.19 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=79.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.....++|||.|||+++++++|+++|++|+.|+.+.++.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 017735 185 KAEPK 189 (367)
Q Consensus 185 ~a~~~ 189 (367)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.3e-18 Score=132.00 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=78.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
..++|||.|||.++++++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|+ .||+..|.+++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999989999999999999999999999 999999999999999987
Q ss_pred CCC
Q 017735 188 PKK 190 (367)
Q Consensus 188 ~~~ 190 (367)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
No 84
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=134.45 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=77.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~----~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
..+.++|||+|||+++++++|+ ++|++||+|++|+|+.++.+ ++||||+|+++++|++||+.||+..|++++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998766 8899999999999999999999999999999
Q ss_pred EeeecCCCCCC
Q 017735 182 EVKKAEPKKPN 192 (367)
Q Consensus 182 ~v~~a~~~~~~ 192 (367)
+|++++++..+
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=134.29 Aligned_cols=83 Identities=24% Similarity=0.504 Sum_probs=78.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|+|+.++. +++++||||+|+++++|++|++.||+..|.+++|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 455678999999999999999999999999999999999975 8999999999999999999999999999999999999
Q ss_pred ecCC
Q 017735 185 KAEP 188 (367)
Q Consensus 185 ~a~~ 188 (367)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=137.11 Aligned_cols=87 Identities=37% Similarity=0.667 Sum_probs=77.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||+|||.++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.++ ..|+++.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999975 9999999999
Q ss_pred eecCCCCC
Q 017735 184 KKAEPKKP 191 (367)
Q Consensus 184 ~~a~~~~~ 191 (367)
+++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=131.27 Aligned_cols=84 Identities=20% Similarity=0.380 Sum_probs=78.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.....++|||.|||+++++++|+++|++| .|..|.|+.+ .++++++||||+|+++++|++||+ ||+..|.++.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 9999999999 789999999999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
++.++..
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987643
No 88
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=137.08 Aligned_cols=88 Identities=15% Similarity=0.268 Sum_probs=79.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHH---HhhccCCceeEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFK---DFFMQFGDVQEHQIMRDHSTS---RSRGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~---~~f~~~G~v~~v~i~~~~~~g---~~~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
.+..+.++|||.|||+++++++|+ ++|++||+|+.|.|+.++.++ ++++||||+|+++++|++||+.||+..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345567899999999999999999 999999999999999987644 56699999999999999999999999999
Q ss_pred CeeeEeeecCCCCC
Q 017735 178 GAQVEVKKAEPKKP 191 (367)
Q Consensus 178 g~~l~v~~a~~~~~ 191 (367)
+++|+|+++.++..
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999987753
No 89
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2.1e-19 Score=139.83 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=79.1
Q ss_pred CcceEEEeCCCC------CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC-ee
Q 017735 108 KTKKIFVGGIPS------SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQ 180 (367)
Q Consensus 108 ~~~~l~V~~lp~------~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g-~~ 180 (367)
..++|||.|||. ++++++|+++|++||+|++|+|+.++.|++++|||||+|+++++|++||+.||+..|.+ ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEeeecCCCC
Q 017735 181 VEVKKAEPKK 190 (367)
Q Consensus 181 l~v~~a~~~~ 190 (367)
|+|+++.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997653
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=144.06 Aligned_cols=91 Identities=20% Similarity=0.342 Sum_probs=83.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc----ccC
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE--HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL----ELA 177 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~--v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~----~~~ 177 (367)
......++|||+|||++++|++|+++|++||.|+. |+|+.|+.+++++|||||+|+++ +|++||+.||+. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567789999999999999999999999999976 99999999999999999999999 999999999999 999
Q ss_pred CeeeEeeecCCCCCCCCC
Q 017735 178 GAQVEVKKAEPKKPNLPQ 195 (367)
Q Consensus 178 g~~l~v~~a~~~~~~~~~ 195 (367)
+++|+|++++++.+....
T Consensus 97 gr~l~V~~a~~~~~~~~~ 114 (131)
T 2m2b_A 97 GKTINVEFAKGSKRDMAS 114 (131)
T ss_dssp GCCCCCEECCCSCCCCCC
T ss_pred CEEEEEEECCCCCCCCCC
Confidence 999999999887655443
No 91
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=136.13 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=74.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CcccCCeeeE
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVE 182 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~--g~~~~g~~l~ 182 (367)
...+.++|||+|||++++|++|+++|++||+|++|.|+++ |+||||+|+++++|++|++.|+ +.+|.+++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456799999999999999999999999999999999975 6899999999999999999875 4789999999
Q ss_pred eeecCCCCCCC
Q 017735 183 VKKAEPKKPNL 193 (367)
Q Consensus 183 v~~a~~~~~~~ 193 (367)
|++++++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998876543
No 92
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.7e-18 Score=132.27 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=78.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||.|||.++++++|+++|++||+|+.|+|+.+ ++++++||||+|++.++|++|++.||+..|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999985 788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 017735 186 AEPKKP 191 (367)
Q Consensus 186 a~~~~~ 191 (367)
++++..
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 93
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.3e-18 Score=130.15 Aligned_cols=81 Identities=37% Similarity=0.701 Sum_probs=75.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||+|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++|++. ++..|++++|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 445778999999999999999999999999999999999999999999999999999999999976 7788999999998
Q ss_pred ec
Q 017735 185 KA 186 (367)
Q Consensus 185 ~a 186 (367)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 94
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=134.24 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=74.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC-----ee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-----AQ 180 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g-----~~ 180 (367)
....++|||.|||+++++++|+++|++||+|+.|+|+.+ +||||+|+++++|++||+.||+..|.+ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred eEeeecCCCCCC
Q 017735 181 VEVKKAEPKKPN 192 (367)
Q Consensus 181 l~v~~a~~~~~~ 192 (367)
|+|++++++.+.
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999886543
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=135.35 Aligned_cols=88 Identities=23% Similarity=0.390 Sum_probs=81.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCc-eeEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CcccCCeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQV 181 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~-v~~v~i~-~~~~~g~~~G~afV~F~~~~~a~~Al~~l~--g~~~~g~~l 181 (367)
..+.++|||+|||+++++++|+++|++||. |+.|.|+ .++.++++++||||+|.++++|++|++.|| ...|.+++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 788888999999999999999999999996 689999999
Q ss_pred EeeecCCCCCCC
Q 017735 182 EVKKAEPKKPNL 193 (367)
Q Consensus 182 ~v~~a~~~~~~~ 193 (367)
+|++++++.+..
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876643
No 96
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.3e-18 Score=135.38 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=78.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||.|+.|.|+.++ ++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecC
Q 017735 185 KAE 187 (367)
Q Consensus 185 ~a~ 187 (367)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=135.76 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=76.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.+.+.++|||+|||+++|+++|+++|++||+|..|.|+.++. ++++|||||+|+++++|++||+ ++++.|++++|+|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999999987 9999999999999999999999 79999999999999
Q ss_pred ecCC
Q 017735 185 KAEP 188 (367)
Q Consensus 185 ~a~~ 188 (367)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8764
No 98
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=2.9e-19 Score=147.02 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=74.5
Q ss_pred eEEEEEeCCHHHHHHHHhhccccCC-eEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEe
Q 017735 64 GFGFVTYADPSVVDKVIEDTHIING-KQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142 (367)
Q Consensus 64 G~afV~f~~~~~a~~al~~~~~i~g-~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~ 142 (367)
++||.+|..++.+..++.+.....+ ...--. .............++|||.|||+++||++|+++|++|+ |+.|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~--~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRG--SGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhccCCCCCCCC--CCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 5788888888777777665432222 211100 01111122345678999999999999999999999999 7799999
Q ss_pred eCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCC
Q 017735 143 RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 190 (367)
Q Consensus 143 ~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~ 190 (367)
.|+. ++++|||||+|+++++|++|| ++|+..|+++.|+|.++.+++
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9975 999999999999999999999 789999999999999887654
No 99
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-19 Score=143.01 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=79.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
...++|||.|||+++++++|+++|++||.|+.|+|+.++.++++++||||+|++.++|++|| .||+..|.++.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCC
Q 017735 187 EPKKP 191 (367)
Q Consensus 187 ~~~~~ 191 (367)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87654
No 100
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=4.7e-18 Score=137.39 Aligned_cols=90 Identities=14% Similarity=0.273 Sum_probs=83.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|+|+.++ ++++++||||+|++.++|++|++.||+..|.+++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCC
Q 017735 185 KAEPKKPNLPQ 195 (367)
Q Consensus 185 ~a~~~~~~~~~ 195 (367)
++.+.....+.
T Consensus 110 ~a~~~~~~~~~ 120 (124)
T 2kt5_A 110 LVASQIDLEHH 120 (124)
T ss_dssp EECCTTCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99987665443
No 101
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=4.9e-18 Score=132.68 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=74.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+++++++|+++|++||.|+.|.|++ +||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 345678999999999999999999999999999999873 499999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 017735 185 KAEPKKPNL 193 (367)
Q Consensus 185 ~a~~~~~~~ 193 (367)
+++++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998876554
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=134.12 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC--cccCCeeeE
Q 017735 106 DFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK--LELAGAQVE 182 (367)
Q Consensus 106 ~~~~~~l~V~~lp~-~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g--~~~~g~~l~ 182 (367)
..+.++|||+|||+ +++|++|+++|++||.|.+|.|+++ ++||||+|+++++|++||+.||. ..|.+++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999876 47999999999999999998874 569999999
Q ss_pred eeecCCCCCCC
Q 017735 183 VKKAEPKKPNL 193 (367)
Q Consensus 183 v~~a~~~~~~~ 193 (367)
|++++.+....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 1x4d_A 86 VHLSQKYKRIK 96 (102)
T ss_dssp EEEECCCTTSS
T ss_pred EEECCCCCCCC
Confidence 99999765443
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=6e-19 Score=144.68 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=77.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCc---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~---v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
...+.++|||+|||+++||++|+++|++|+. |+.|+|+.|+. ++++|||||+|+++++|++||+ ||+..|+++.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999999 99999999999
Q ss_pred EeeecCCCC
Q 017735 182 EVKKAEPKK 190 (367)
Q Consensus 182 ~v~~a~~~~ 190 (367)
+|.++.+++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999986543
No 104
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=131.50 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=74.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc--CCcccCCeeeE
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG--NKLELAGAQVE 182 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l--~g~~~~g~~l~ 182 (367)
...+.++|||+|||+++++++|+++|++||.|++|.|+++ ++||||+|+++++|++|++.| +...|.+++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4456789999999999999999999999999999998865 789999999999999999976 57789999999
Q ss_pred eeecCCCCCCC
Q 017735 183 VKKAEPKKPNL 193 (367)
Q Consensus 183 v~~a~~~~~~~ 193 (367)
|++++++....
T Consensus 85 V~~a~~~~~~~ 95 (101)
T 2cq1_A 85 IQYSNHKELKT 95 (101)
T ss_dssp EEECSCSSCCC
T ss_pred EEEcCcccCcC
Confidence 99999876654
No 105
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7.5e-19 Score=135.10 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
...++|||.|||+++++++|+++|++|+.|+.+.++.++.++++++||||+|+++++|++||+.||+..|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CC
Q 017735 187 EP 188 (367)
Q Consensus 187 ~~ 188 (367)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-19 Score=132.30 Aligned_cols=81 Identities=12% Similarity=0.388 Sum_probs=76.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.+.++|||.|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++|++.||+..|.++.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 017735 187 E 187 (367)
Q Consensus 187 ~ 187 (367)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-19 Score=137.23 Aligned_cols=85 Identities=26% Similarity=0.535 Sum_probs=80.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.+.++|||.|||.++++++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++|++.||+..|.++.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 017735 187 EPKKP 191 (367)
Q Consensus 187 ~~~~~ 191 (367)
.++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87654
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=133.72 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=75.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.....++|||.|||++++|++|+++|++|+. +.|+|+.|+ ++++++||||+|+++++|++||+ +|+..|+++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 499999997 89999999999999999999995 69999999999999
Q ss_pred ecCCCC
Q 017735 185 KAEPKK 190 (367)
Q Consensus 185 ~a~~~~ 190 (367)
++.+.+
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887554
No 109
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=132.15 Aligned_cols=86 Identities=27% Similarity=0.481 Sum_probs=78.2
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
.....+.++|||.|||+++++++|+++|++| ..|.++.++.++++++||||+|+++++|++||+.||+..|.+++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455678999999999999999999999977 4788888988999999999999999999999999999999999999
Q ss_pred eeecCCCCC
Q 017735 183 VKKAEPKKP 191 (367)
Q Consensus 183 v~~a~~~~~ 191 (367)
|++++++.+
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987654
No 110
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=139.31 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=77.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+++++++|+++|++||.|+.|.+..+..++++++||||+|++.++|++||+.||+..|.+++|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999544333333378889999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 017735 185 KAEPKKPNLP 194 (367)
Q Consensus 185 ~a~~~~~~~~ 194 (367)
+++++....+
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpx_A 101 FGKNKKQRSS 110 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EccCCCCCCC
Confidence 9998766543
No 111
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=132.83 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=77.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~-v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
...+.++|||+|||+++++++|+++|++|+.|.. |.|+.+ .+++++|||||+|+++++|++||+. |+..|+++.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999997 888888 7899999999999999999999998 999999999999
Q ss_pred eecCCCCC
Q 017735 184 KKAEPKKP 191 (367)
Q Consensus 184 ~~a~~~~~ 191 (367)
.++.+++.
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876553
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=131.77 Aligned_cols=83 Identities=18% Similarity=0.398 Sum_probs=75.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+++++++|+++|++|+.| +|+.+ .++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45578999999999999999999999999977 56666 678999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
+++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987754
No 113
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=135.00 Aligned_cols=85 Identities=22% Similarity=0.446 Sum_probs=75.7
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDH-STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~-~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
......++|||+|||.++++++|+++|++|| |+.|+|+.++ .++++++||||+|.+.++|++|| .||+..|.++.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456789999999999999999999999999 9999999998 68999999999999999999999 8999999999999
Q ss_pred eeecCCCC
Q 017735 183 VKKAEPKK 190 (367)
Q Consensus 183 v~~a~~~~ 190 (367)
|++++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998754
No 114
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=128.41 Aligned_cols=79 Identities=25% Similarity=0.577 Sum_probs=73.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||.|||+++++++|+++|++||+|+.|+|+ ++||||+|+++++|++|++.||+..|++++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 56999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 115
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=2.2e-18 Score=144.90 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=77.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCC--ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G--~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..++|||+|||++++|++|+++|++|| .|..|+|+.|+.+++++|||||+|+++++|++||+.||+..|++++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 017735 186 AEPK 189 (367)
Q Consensus 186 a~~~ 189 (367)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=135.31 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=75.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CcccCCeeeE
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVE 182 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~--g~~~~g~~l~ 182 (367)
...+.++|||+|||++++|++|+++|++||.|++|.|+++ ++||||+|+++++|++|++.|+ ...|.+++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999976 7899999999999999999887 4689999999
Q ss_pred eeecCCCCCCC
Q 017735 183 VKKAEPKKPNL 193 (367)
Q Consensus 183 v~~a~~~~~~~ 193 (367)
|+++++++...
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998876554
No 117
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.6e-18 Score=127.23 Aligned_cols=75 Identities=41% Similarity=0.729 Sum_probs=72.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
+|||+|||+++++++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|++ ||+..|++++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 8999999999999875
No 118
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=127.77 Aligned_cols=76 Identities=41% Similarity=0.745 Sum_probs=73.5
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
++|||+|||.++++++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|++.++ ..|++++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999986
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=131.17 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcc--cCCeeeE
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE--LAGAQVE 182 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~--~~g~~l~ 182 (367)
...++++|||+|||+++|+++|+++|++||+|++|.|+++ |+||||+|++.++|++|++.|++.. |.+++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 4457889999999999999999999999999999999853 7899999999999999999988765 7899999
Q ss_pred eeecCCCC
Q 017735 183 VKKAEPKK 190 (367)
Q Consensus 183 v~~a~~~~ 190 (367)
|+++++++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 120
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=6.9e-19 Score=133.93 Aligned_cols=84 Identities=31% Similarity=0.616 Sum_probs=74.4
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
++|||+|||.++++++|+++|++||+|+.|.|+.++.++++++||||+|++++ |++|++.||+..|.+++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCCCC
Q 017735 190 KPNLP 194 (367)
Q Consensus 190 ~~~~~ 194 (367)
....+
T Consensus 81 ~~~~~ 85 (90)
T 2ki2_A 81 KSLEH 85 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 65543
No 121
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.4e-18 Score=133.48 Aligned_cols=84 Identities=21% Similarity=0.482 Sum_probs=77.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc--------
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL-------- 176 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~-------- 176 (367)
.+.+.++|||.|||.++++++|+++|++||.|+.|+|+.++ ++++++||||+|.++++|++||+.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCeeeEeeecCCC
Q 017735 177 AGAQVEVKKAEPK 189 (367)
Q Consensus 177 ~g~~l~v~~a~~~ 189 (367)
.+++|.|+++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998754
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=131.04 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=73.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC--cccCCeeeE
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK--LELAGAQVE 182 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g--~~~~g~~l~ 182 (367)
...+.++|||+|||++++|++|+++|++||.|++|.|+++ |+||||+|+++++|++|++.|+. ..|.+++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998864 78999999999999999998754 569999999
Q ss_pred eeecCCCCCCC
Q 017735 183 VKKAEPKKPNL 193 (367)
Q Consensus 183 v~~a~~~~~~~ 193 (367)
|++++.+....
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99998876543
No 123
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=7.6e-18 Score=136.07 Aligned_cols=83 Identities=17% Similarity=0.442 Sum_probs=78.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+.++|||+|||.++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++|| .||+..|.++.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4679999999999999999999999999999999999989999999999999999999999 899999999999999988
Q ss_pred CCCC
Q 017735 188 PKKP 191 (367)
Q Consensus 188 ~~~~ 191 (367)
+..+
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 124
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=8.1e-18 Score=133.05 Aligned_cols=96 Identities=18% Similarity=0.451 Sum_probs=80.2
Q ss_pred CCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCC-CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHH
Q 017735 87 NGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 165 (367)
Q Consensus 87 ~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~-~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~ 165 (367)
.+..|.++.+.+... .......++|||.|||++ +++++|+++|++||+|+.|.| +++||||+|+++++|+
T Consensus 6 ~g~~~~~~~s~~~~~-~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK-NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCS-CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCC-CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 345555555544322 233445689999999999 999999999999999999998 4789999999999999
Q ss_pred HHHHhcCCcccCCeeeEeeecCCCCC
Q 017735 166 DLLAKGNKLELAGAQVEVKKAEPKKP 191 (367)
Q Consensus 166 ~Al~~l~g~~~~g~~l~v~~a~~~~~ 191 (367)
+||+.||+..|++++|+|++++++.+
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999986544
No 125
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=128.64 Aligned_cols=81 Identities=20% Similarity=0.366 Sum_probs=74.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC--CeeeE
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA--GAQVE 182 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~--g~~l~ 182 (367)
...+.++|||.|||.++++++|+++|++||+|+.|+|+.+ ++||||+|+++++|++|++.||+..|. +++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999999864 679999999999999999999999999 99999
Q ss_pred eeecCCCCC
Q 017735 183 VKKAEPKKP 191 (367)
Q Consensus 183 v~~a~~~~~ 191 (367)
|++++++.+
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999987643
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=127.06 Aligned_cols=81 Identities=20% Similarity=0.424 Sum_probs=74.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||.|||+++++++|+++|++||.|+.|.|+++ ||||+|+++++|++|++.||+..|.+++|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34567799999999999999999999999999999999844 9999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
++++++...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999877654
No 127
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=133.13 Aligned_cols=85 Identities=26% Similarity=0.520 Sum_probs=78.3
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
.....+.++|||+|||.++++++|+++|++||+|+.|+|+.++ ..+++||||+|++.++|++|++.||+..|++++|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999885 34899999999999999999999999999999999
Q ss_pred eeecCCC
Q 017735 183 VKKAEPK 189 (367)
Q Consensus 183 v~~a~~~ 189 (367)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 128
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=136.25 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=78.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCce-eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v-~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
...+.++|||.|||+++++++|+++|++|+.| ..|+|+.|+ ++++++||||+|+++++|++||+. |+..|.++.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999998 899999999999999999999988 999999999999
Q ss_pred eecCCCC
Q 017735 184 KKAEPKK 190 (367)
Q Consensus 184 ~~a~~~~ 190 (367)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998765
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=5.4e-18 Score=126.37 Aligned_cols=74 Identities=11% Similarity=0.234 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
.+..|||+||++.+||++|+++|.+||+|++++|+. ++|||||+|.++++|++|++.||+..+.+++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999975 58999999999999999999999999999999999984
No 130
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=128.32 Aligned_cols=82 Identities=27% Similarity=0.517 Sum_probs=75.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|+|+.+ ++||||+|+++++|++|++.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4456789999999999999999999999999999999854 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 017735 185 KAEPKKPN 192 (367)
Q Consensus 185 ~a~~~~~~ 192 (367)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99887654
No 131
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=131.70 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=77.4
Q ss_pred CCCCcceEEEeCCCCCC------CHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 105 KDFKTKKIFVGGIPSSV------NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~------te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
.....++|||+|||+.+ ++++|+++|++||.|..|.|+ +.++++++||||+|+++++|++||+.||+..|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 44457899999999999 789999999999999999988 4688999999999999999999999999999999
Q ss_pred e-eeEeeecCCCCC
Q 017735 179 A-QVEVKKAEPKKP 191 (367)
Q Consensus 179 ~-~l~v~~a~~~~~ 191 (367)
+ +|+|+++...+.
T Consensus 89 ~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 89 QHTFRVNLFTDFDK 102 (105)
T ss_dssp TCEEEEECSCCCCC
T ss_pred CceEEEEEcchHhh
Confidence 8 999999986653
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=133.55 Aligned_cols=79 Identities=29% Similarity=0.483 Sum_probs=73.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+..+|||+|||++++|++|+++|++| .|+.|.|+.|+. ++++|||||+|+++++|++|| ++|+..|+++.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 999999999975 999999999999999999999 679999999999999887
Q ss_pred CC
Q 017735 188 PK 189 (367)
Q Consensus 188 ~~ 189 (367)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 133
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=131.40 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=74.0
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CcccCCeeeE
Q 017735 106 DFKTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVE 182 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~-~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~--g~~~~g~~l~ 182 (367)
..+.++|||+|||++ +++++|+++|++||+|.+|.|++ +++||||+|+++++|++||+.|+ ...|.+++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999974 37899999999999999999875 5679999999
Q ss_pred eeecCCCCCCCC
Q 017735 183 VKKAEPKKPNLP 194 (367)
Q Consensus 183 v~~a~~~~~~~~ 194 (367)
|++++.+.....
T Consensus 96 V~~a~~~~~~~~ 107 (112)
T 1x4f_A 96 VDLSEKYKKLVS 107 (112)
T ss_dssp EEEECSCSSSSC
T ss_pred EEECcccccccc
Confidence 999988776543
No 134
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-18 Score=138.89 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=78.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.....++|||.|||+++++++|+++|++||.|..+.++.+..++++++||||+|+++++|++||+ ||+..|+++.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999987777777899999999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 017735 185 KAEPKK 190 (367)
Q Consensus 185 ~a~~~~ 190 (367)
++.+++
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 988654
No 135
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=136.88 Aligned_cols=82 Identities=28% Similarity=0.545 Sum_probs=77.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||.++++++|+++|++||+|+.|+|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 017735 185 KA 186 (367)
Q Consensus 185 ~a 186 (367)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 136
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=130.91 Aligned_cols=82 Identities=20% Similarity=0.424 Sum_probs=75.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
....++|||+|||.++++++|+++|++||.|+.|+|+.+ ++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 446789999999999999999999999999999999976 78999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 017735 186 AEPKKPNL 193 (367)
Q Consensus 186 a~~~~~~~ 193 (367)
++++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 98876543
No 137
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=128.42 Aligned_cols=82 Identities=16% Similarity=0.293 Sum_probs=73.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
.....++|||.|||+++++++|+++|++||.|. +.++.+ ++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999997 677654 568999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
+++++.+
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987653
No 138
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-18 Score=135.04 Aligned_cols=85 Identities=16% Similarity=0.351 Sum_probs=77.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||+|||.++++++|+++|++|+.|.. .++.++.++++++||||+|+++++|++||+ ||+..|.+++|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 677777788999999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
+++++.+
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987654
No 139
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=4.5e-18 Score=136.36 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCc---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~---v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
..+.++|||+|||+++|+++|+++|++|+. |+.|+|+.++. ++++|||||+|+++++|++||+ ||+..|+++.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 446789999999999999999999999999 89999999976 9999999999999999999999 899999999999
Q ss_pred eeecCCCC
Q 017735 183 VKKAEPKK 190 (367)
Q Consensus 183 v~~a~~~~ 190 (367)
|.++..++
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 140
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=125.70 Aligned_cols=79 Identities=24% Similarity=0.459 Sum_probs=73.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+++++++|+++|++||.|+.|+|+++ ||||+|+++++|++|++.||+..|++++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999844 99999999999999999999999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
+++++.+
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987754
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=125.24 Aligned_cols=81 Identities=22% Similarity=0.467 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
...++|||+|||+++++++|+++|++||+|..| +.++.+++ ||||+|+++++|++||+ ||+..|++++|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999987 55655654 99999999999999999 9999999999999998
Q ss_pred CCCCCCC
Q 017735 187 EPKKPNL 193 (367)
Q Consensus 187 ~~~~~~~ 193 (367)
.++....
T Consensus 80 ~~~~~~~ 86 (94)
T 2e5g_A 80 EQKEFQS 86 (94)
T ss_dssp CCSCCCC
T ss_pred CcCCCCC
Confidence 7765543
No 142
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1e-17 Score=132.46 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
...+|||+|||++++|++|+++|++|| +|..|.|+.+ ++++||||+|+++++|++||++||+.+|++++|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 8999998643 47899999999999999999999999999999999998
Q ss_pred CCC
Q 017735 187 EPK 189 (367)
Q Consensus 187 ~~~ 189 (367)
+.+
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 143
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=129.20 Aligned_cols=78 Identities=21% Similarity=0.436 Sum_probs=73.3
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
++|||+|||.++++++|+++|++||+|+.|.|+.+ +++||||+|+++++|++|++.||+..|.+++|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999987 6889999999999999999999999999999999999887
Q ss_pred CCC
Q 017735 190 KPN 192 (367)
Q Consensus 190 ~~~ 192 (367)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=122.85 Aligned_cols=78 Identities=28% Similarity=0.565 Sum_probs=72.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc-CCcccCCeeeE
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQVE 182 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l-~g~~~~g~~l~ 182 (367)
..+.+.++|||.|||.++++++|+++|++||+|+.|.|+.+ ++||||+|+++++|++|++.| ++..|.+++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34556789999999999999999999999999999999874 789999999999999999998 99999999999
Q ss_pred eeecC
Q 017735 183 VKKAE 187 (367)
Q Consensus 183 v~~a~ 187 (367)
|++++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 145
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3e-17 Score=129.39 Aligned_cols=82 Identities=22% Similarity=0.456 Sum_probs=73.2
Q ss_pred CCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 102 VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 102 ~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
....+.+.++|||+|||.++++++|+++|++||.|+.|.|+ ++||||+|++.++|++|++.||+..|.+++|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34456678999999999999999999999999999999998 6799999999999999999999999999999
Q ss_pred EeeecCCCCC
Q 017735 182 EVKKAEPKKP 191 (367)
Q Consensus 182 ~v~~a~~~~~ 191 (367)
+|++++++..
T Consensus 96 ~V~~a~~~~~ 105 (108)
T 2jvo_A 96 EVVYSKLPAK 105 (108)
T ss_dssp EEESCSCCC-
T ss_pred EEEEecCCCC
Confidence 9999987653
No 146
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.5e-17 Score=124.58 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=72.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccC--CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~--G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
....+.++|||.|||+++++++|+++|++| +.|..|.++ ++||||+|.+.++|++||+.||+..|.+++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999998875 5699999999999999999999999999999
Q ss_pred EeeecCCCCC
Q 017735 182 EVKKAEPKKP 191 (367)
Q Consensus 182 ~v~~a~~~~~ 191 (367)
+|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=126.59 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCc-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cccCCeeeEe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELAGAQVEV 183 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~-v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g-~~~~g~~l~v 183 (367)
..+.++|||+|||+++++++|+++|++||. |..+.++ +++||||+|+++++|++||+.||+ ..|++++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666653 378999999999999999999999 9999999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
++++++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 148
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=132.59 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=77.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCc---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~---v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
.....++|||+|||+++|+++|+++|++|+. |..|.|+.++. ++++|||||+|+++++|++||+ +|+..|+++.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4456789999999999999999999999988 89999999976 9999999999999999999999 89999999999
Q ss_pred EeeecCCCC
Q 017735 182 EVKKAEPKK 190 (367)
Q Consensus 182 ~v~~a~~~~ 190 (367)
+|.++.+++
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 149
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=127.71 Aligned_cols=77 Identities=17% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
...++|||+|||.++++++|+++|++||.|++|+|+ ++++||||+|++.++|++|++.||+..|++++|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 356899999999999999999999999999999998 34789999999999999999999999999999999998
Q ss_pred CCC
Q 017735 187 EPK 189 (367)
Q Consensus 187 ~~~ 189 (367)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 150
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=6.5e-18 Score=123.88 Aligned_cols=75 Identities=35% Similarity=0.676 Sum_probs=71.8
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
+|||+|||.++++++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|++. ++..|.+++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999986 889999999999875
No 151
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=132.03 Aligned_cols=83 Identities=12% Similarity=0.263 Sum_probs=74.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~----~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
..+.++|||+|||+.+++++|+ ++|++||+|.+|.+.. +++++|||||+|++.++|++|++.||+..|.+++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6899999999988753 57789999999999999999999999999999999
Q ss_pred EeeecCCCCC
Q 017735 182 EVKKAEPKKP 191 (367)
Q Consensus 182 ~v~~a~~~~~ 191 (367)
+|++++.+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987654
No 152
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-16 Score=121.84 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=72.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|| ++++++|+++|++||+|+.|.|. ++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456789999996 89999999999999999999985 458899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 017735 185 KAEPKKPNL 193 (367)
Q Consensus 185 ~a~~~~~~~ 193 (367)
+++++....
T Consensus 83 ~a~~~~~~~ 91 (97)
T 1x5p_A 83 IARKQPMLD 91 (97)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCCCCC
Confidence 998876543
No 153
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=123.83 Aligned_cols=74 Identities=15% Similarity=0.348 Sum_probs=68.6
Q ss_pred cceEEEeCCCCCC------CHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCe-ee
Q 017735 109 TKKIFVGGIPSSV------NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-QV 181 (367)
Q Consensus 109 ~~~l~V~~lp~~~------te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~-~l 181 (367)
.++|||+|||..+ ++++|+++|++||+|..|.|+ +.++++++||||+|+++++|++|++.||+..|.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 46889999999999999999999999999999999 88
Q ss_pred Eee
Q 017735 182 EVK 184 (367)
Q Consensus 182 ~v~ 184 (367)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 873
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-19 Score=139.87 Aligned_cols=86 Identities=21% Similarity=0.375 Sum_probs=80.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQE--------HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 177 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~--------v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~ 177 (367)
..+.++|||+|||.++++++|+++|++||.|.. |.|+.++.++++++||||+|+++++|++||+.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CeeeEeeecCCCCC
Q 017735 178 GAQVEVKKAEPKKP 191 (367)
Q Consensus 178 g~~l~v~~a~~~~~ 191 (367)
+++|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987653
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=9.1e-17 Score=134.67 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=73.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC--eeeEe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEV 183 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g--~~l~v 183 (367)
..+..+|||.||++.+++++|+++|++||+|++|.|+.+. +++||||+|++.++|++|++.||+..|.+ ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3456789999999999999999999999999999997543 57899999999999999999999999965 99999
Q ss_pred eecCCCCC
Q 017735 184 KKAEPKKP 191 (367)
Q Consensus 184 ~~a~~~~~ 191 (367)
++++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99998753
No 156
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=4.2e-17 Score=140.01 Aligned_cols=87 Identities=15% Similarity=0.292 Sum_probs=80.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||.|||+.+++++|+++|++||+|+.|.|+.++ ++++++||||+|+++++|++||+.||+..|++++|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 017735 185 KAEPKKPN 192 (367)
Q Consensus 185 ~a~~~~~~ 192 (367)
++......
T Consensus 163 ~a~~~~~~ 170 (177)
T 2f3j_A 163 LVASQIDL 170 (177)
T ss_dssp EESSGGGG
T ss_pred EecCCCCC
Confidence 99876543
No 157
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=9.3e-17 Score=124.01 Aligned_cols=78 Identities=22% Similarity=0.488 Sum_probs=71.4
Q ss_pred CCCCCcceEEEeCCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 104 SKDFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~-~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
....+.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|++.++|++|++.||+..|.+++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455789999999998 99999999999999999999983 68999999999999999999999999999999
Q ss_pred eeecCCC
Q 017735 183 VKKAEPK 189 (367)
Q Consensus 183 v~~a~~~ 189 (367)
|++++++
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998765
No 158
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=3.8e-17 Score=130.29 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=66.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee-----e
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ-----V 181 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~-----l 181 (367)
...++|||.|||+++++++|+++|++||+|+.|.|+.+ +||||+|+++++|++||++||+.+|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999865 79999999999999999999999999998 6
Q ss_pred EeeecCCC
Q 017735 182 EVKKAEPK 189 (367)
Q Consensus 182 ~v~~a~~~ 189 (367)
+|+.+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66665553
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.6e-17 Score=129.49 Aligned_cols=84 Identities=29% Similarity=0.636 Sum_probs=77.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
....++|||+|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|+++++|++|++ ++..|+++.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4456899999999999999999999999999999999998 89999999999999999999998 89999999999999
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 9877654
No 160
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.1e-17 Score=125.72 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 106 DFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 106 ~~~~~~l~V~~lp~-~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
..+.++|||+|||+ ++++++|+++|++||.|+.|.|. ++||||+|+++++|++|++.||+..|.+++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999984 6799999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 017735 185 KAEPKKPN 192 (367)
Q Consensus 185 ~a~~~~~~ 192 (367)
+++++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 161
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=125.51 Aligned_cols=80 Identities=20% Similarity=0.392 Sum_probs=74.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+.++|||.|||. ++|+++|+++|++||+|++|+|++++.|++++|||||+|.++++|++|++. ...|.++.|.
T Consensus 17 ~~gt~lfV~nLp~----~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQ----NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCSEEEEESCCT----TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4567899999999 999999999999999999999999999999999999999999999999984 4589999999
Q ss_pred EeeccC
Q 017735 93 IKRTIP 98 (367)
Q Consensus 93 v~~~~~ 98 (367)
|+++.|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999865
No 162
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-17 Score=126.00 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=74.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 104 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 104 ~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
....+.++|||+|||.++++++|+++|++|+.|..+ ..++++++||||+|+++++|++|++.||+..|.+++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 346788999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 017735 184 KKAEPKKP 191 (367)
Q Consensus 184 ~~a~~~~~ 191 (367)
+++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99987653
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=2.2e-17 Score=133.29 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=74.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCcee--EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQ--EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~--~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
..+.++|||+|||+++||++|+++|++| .|+ .|.|+.|+. ++++|||||+|+++++|++||++ ++..|+++.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3456889999999999999999999999 677 899999976 99999999999999999999986 669999999999
Q ss_pred eecCCCC
Q 017735 184 KKAEPKK 190 (367)
Q Consensus 184 ~~a~~~~ 190 (367)
.++.+++
T Consensus 116 ~~a~~~e 122 (126)
T 2hgm_A 116 FKSSQEE 122 (126)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9886543
No 164
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=134.14 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=74.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCce----eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDV----QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v----~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
+..+|||.|||+++|+++|+++|++|++| +.|.|+.+ .+++++|||||+|+++++|++||++ |+..|.++.|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 46899999999999999999999999875 68999998 4899999999999999999999997 999999999999
Q ss_pred eecCCCC
Q 017735 184 KKAEPKK 190 (367)
Q Consensus 184 ~~a~~~~ 190 (367)
..+.+++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9887543
No 165
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.7e-17 Score=123.74 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=73.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v-~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
....++|||+|||+++++++|+++|++||+|+.| .|+.++.++ .|||+|.++++|++||+.||+..|.+++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 588876554 39999999999999999999999999999999
Q ss_pred ecCCCC
Q 017735 185 KAEPKK 190 (367)
Q Consensus 185 ~a~~~~ 190 (367)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998874
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.9e-17 Score=127.56 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=73.9
Q ss_pred CCCCcceEEE--eCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc-----C
Q 017735 105 KDFKTKKIFV--GGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL-----A 177 (367)
Q Consensus 105 ~~~~~~~l~V--~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~-----~ 177 (367)
...++++||| +||++++++++|+++|++||+|++|.|+.+ ++||||+|+++++|++|++.||+.+| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3446789999 669999999999999999999999988643 78999999999999999999999988 6
Q ss_pred CeeeEeeecCCCCCCCC
Q 017735 178 GAQVEVKKAEPKKPNLP 194 (367)
Q Consensus 178 g~~l~v~~a~~~~~~~~ 194 (367)
+++|.|.+++......|
T Consensus 95 g~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 95 KITLYLNFVEKVQWSGP 111 (114)
T ss_dssp EEECEEEEESCCCCSSC
T ss_pred CcEEEEEecccCcccCC
Confidence 89999999987665544
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.2e-16 Score=141.39 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=78.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.+|...+.++.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 017735 186 AEPKK 190 (367)
Q Consensus 186 a~~~~ 190 (367)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87554
No 168
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.5e-17 Score=127.13 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
..++|||.|||.++++++|+++|++||.|..|.|+. +++||||+|++.++|++||+.||+..|.+++|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998874 47899999999999999999999999999999999998
Q ss_pred CCCC
Q 017735 188 PKKP 191 (367)
Q Consensus 188 ~~~~ 191 (367)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7544
No 169
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=4.6e-17 Score=125.50 Aligned_cols=83 Identities=17% Similarity=0.387 Sum_probs=75.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~----~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
..+.++|||.|||.++++++|+ ++|++||.|..|.|+. ++++++||||+|.++++|++|++.||+..|.+++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999999873 46778999999999999999999999999999999
Q ss_pred EeeecCCCCC
Q 017735 182 EVKKAEPKKP 191 (367)
Q Consensus 182 ~v~~a~~~~~ 191 (367)
+|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 170
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.6e-16 Score=126.52 Aligned_cols=83 Identities=10% Similarity=0.307 Sum_probs=75.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||.|||.++++++|+++|++||.|..|.|+.+. ++++||||+|.+.++|++|++.||+..|.++.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999763 4589999999999999999999999999999999999
Q ss_pred cCCCCC
Q 017735 186 AEPKKP 191 (367)
Q Consensus 186 a~~~~~ 191 (367)
+.++..
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986543
No 171
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.4e-16 Score=120.63 Aligned_cols=76 Identities=16% Similarity=0.300 Sum_probs=70.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
..++|||+|||+++++++|+++|++| .|+.|+|. ++++||||+|+++++|++|++.||+..|.+++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999984 568999999999999999999999999999999999987
Q ss_pred CCC
Q 017735 188 PKK 190 (367)
Q Consensus 188 ~~~ 190 (367)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 172
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=123.82 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=74.3
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc---cccCCeEEE
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT---HIINGKQVE 92 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~---~~i~g~~i~ 92 (367)
+++|+|.|||. ++|+++|+++|++|| +|++|+|++++.|+++||||||+|.++++|++||+.+ ..+.++.|.
T Consensus 1 S~~i~v~nLp~----~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQ----AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCS----SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCC----CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 46899999999 999999999999999 8999999999999999999999999999999999843 368999999
Q ss_pred EeeccCCCC
Q 017735 93 IKRTIPKGA 101 (367)
Q Consensus 93 v~~~~~~~~ 101 (367)
|+++.++..
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 999887654
No 173
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=9e-17 Score=123.46 Aligned_cols=82 Identities=17% Similarity=0.359 Sum_probs=74.0
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCC--CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc------
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYG--EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH------ 84 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G--~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~------ 84 (367)
.+....||||.||++ ++|+++|+++|++|| +|.+|+|++|+.|+++||||||+|.++++|++|++.++
T Consensus 5 ~~~~m~tlfV~nL~~----~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 5 HHHHMDTIILRNIAP----HTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp SSCCCCEEEEESCCT----TCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred cCCccCEEEEeCCCC----cCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 355788999999999 999999999999999 47899999999999999999999999999999998543
Q ss_pred ccCCeEEEEeeccC
Q 017735 85 IINGKQVEIKRTIP 98 (367)
Q Consensus 85 ~i~g~~i~v~~~~~ 98 (367)
.|++++|.|+++.+
T Consensus 81 ~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 81 KIDGKTIGVDFAKS 94 (95)
T ss_dssp EETTEEEEEEECCC
T ss_pred eECCEEEEEEEccC
Confidence 48999999998753
No 174
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=1.6e-16 Score=120.71 Aligned_cols=80 Identities=30% Similarity=0.594 Sum_probs=63.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+..+|||+|||++++|++|+++|++||+|++|+|+.+ ++|||||+|+++++|+++.. ..+.+.+++|.|+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEE
Confidence 4456789999999999999999999999999999999875 68999999999999985322 1344669999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987654
No 175
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=121.09 Aligned_cols=86 Identities=27% Similarity=0.460 Sum_probs=79.6
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEI 93 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v 93 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|+.++.++++++||||+|.+.++|++||++.+.|+++.|.|
T Consensus 12 ~~~~~~l~v~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPW----KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCS----SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCEEEEEcCCC----cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEE
Confidence 34678999999999 99999999999999999999999999899999999999999999999999888999999999
Q ss_pred eeccCCCCCC
Q 017735 94 KRTIPKGAVG 103 (367)
Q Consensus 94 ~~~~~~~~~~ 103 (367)
+++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9998875543
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=4.2e-16 Score=135.72 Aligned_cols=116 Identities=17% Similarity=0.326 Sum_probs=89.6
Q ss_pred CHHHHHHHHhhc--c--ccCCeEEEEeeccCCCCCCC-----CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEe
Q 017735 72 DPSVVDKVIEDT--H--IINGKQVEIKRTIPKGAVGS-----KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142 (367)
Q Consensus 72 ~~~~a~~al~~~--~--~i~g~~i~v~~~~~~~~~~~-----~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~ 142 (367)
+.+.+..|++.. . .+......|++....+.+.. ...+.++|||.|||+++++++|+++|++||+|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567777888744 2 33444444444422111111 12346899999999999999999999999999999999
Q ss_pred eCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 143 RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 143 ~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
++. +++++|||||+|+++++|++||+.++ ..|++++|+|.++..-
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 986 58899999999999999999998765 5899999999987653
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.4e-16 Score=132.44 Aligned_cols=85 Identities=22% Similarity=0.424 Sum_probs=80.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+.++|||+|||.++++++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++.|++..|.+++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 017735 188 PKKPN 192 (367)
Q Consensus 188 ~~~~~ 192 (367)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3.9e-16 Score=131.69 Aligned_cols=83 Identities=23% Similarity=0.530 Sum_probs=79.2
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
.++|||.|||.++++++|+++|++||+|..|.|+.++.++++++||||+|.++++|++|++.||+..+.+++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999886
Q ss_pred CCC
Q 017735 189 KKP 191 (367)
Q Consensus 189 ~~~ 191 (367)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 179
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=123.23 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=74.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
.+.++|||.||++ ++++++|+++|++||+|++|+|++++.|++++|||||+|++.++|++|++.+ ..|+++.|.
T Consensus 4 ~p~~~lfV~nL~~----~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLND----NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCT----TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEECCCC----CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4678999999999 9999999999999999999999999999999999999999999999999844 589999999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|.++...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9887543
No 180
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=120.25 Aligned_cols=79 Identities=34% Similarity=0.624 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
.+.++|||+|||+++++++|+++|++||+|+.|+|+.+ +++||||+|+++++|++|+.. .+.+.+++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35789999999999999999999999999999999865 689999999999999876443 45668999999999
Q ss_pred CCCCCC
Q 017735 187 EPKKPN 192 (367)
Q Consensus 187 ~~~~~~ 192 (367)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877654
No 181
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.3e-16 Score=125.38 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=71.7
Q ss_pred ceEEEeCC----CCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC----H-H---HHHHHHH--hcCCcc
Q 017735 110 KKIFVGGI----PSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----E-Q---AVDDLLA--KGNKLE 175 (367)
Q Consensus 110 ~~l~V~~l----p~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~----~-~---~a~~Al~--~l~g~~ 175 (367)
++|||+|| |+.++|++|+++|++||+|.+|.++.|+.|++++|||||+|.+ + + +|.+|++ +|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 3 2 2888988 789999
Q ss_pred cCCeeeEeeecCC
Q 017735 176 LAGAQVEVKKAEP 188 (367)
Q Consensus 176 ~~g~~l~v~~a~~ 188 (367)
|++++|+|++...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987653
No 182
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=6.2e-17 Score=134.10 Aligned_cols=87 Identities=25% Similarity=0.390 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEE--E---eeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQ--I---MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 180 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~--i---~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~ 180 (367)
..+.++|||+|||+++++++|+++|++||.|..|. + +....++++++||||+|.+.++|++||+.||+..|.+++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999987641 0 111236788999999999999999999999999999999
Q ss_pred eEeeecCCCCCC
Q 017735 181 VEVKKAEPKKPN 192 (367)
Q Consensus 181 l~v~~a~~~~~~ 192 (367)
|+|+++++..+.
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876544
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=5.9e-16 Score=134.41 Aligned_cols=86 Identities=31% Similarity=0.620 Sum_probs=78.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++.++++++||||+|.++++|++||+. ++..|.++.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
++.++..
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9877654
No 184
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=1.3e-15 Score=123.07 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=73.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHhcCCcccCC--eeeEe
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF-GFITFDTEQAVDDLLAKGNKLELAG--AQVEV 183 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~-afV~F~~~~~a~~Al~~l~g~~~~g--~~l~v 183 (367)
.+...|||.||++.+|+++|+++|++||+|.+|.|+.+ +++| |||+|++.++|++|++.||+..|.+ ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 35567899999999999999999999999999998864 2678 9999999999999999999999988 99999
Q ss_pred eecCCCCCCC
Q 017735 184 KKAEPKKPNL 193 (367)
Q Consensus 184 ~~a~~~~~~~ 193 (367)
++++++.-..
T Consensus 101 ~~ak~~~l~v 110 (130)
T 3zzy_A 101 DFSKLTSLNV 110 (130)
T ss_dssp EECSCSSCCC
T ss_pred EecCCCceeE
Confidence 9999875443
No 185
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.7e-16 Score=122.15 Aligned_cols=78 Identities=26% Similarity=0.477 Sum_probs=67.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHST---SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~---g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
...++|||+|||+++++++|+++|++||+|+ +.++.++.+ +++++||||+|+++++|++||+.|+ .++++.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 888888777 6999999999999999999999983 366776666
Q ss_pred eecC
Q 017735 184 KKAE 187 (367)
Q Consensus 184 ~~a~ 187 (367)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5544
No 186
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.6e-15 Score=120.69 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=69.8
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHhcCCcccCC--eeeEeee
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF-GFITFDTEQAVDDLLAKGNKLELAG--AQVEVKK 185 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~-afV~F~~~~~a~~Al~~l~g~~~~g--~~l~v~~ 185 (367)
...|||.||++.+++++|+++|++||.|++|.|+.. .+| |||+|++.++|++|++.||+.+|.+ ++|+|++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 445789999999999999999999999999999752 276 9999999999999999999999987 6999999
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
++++...
T Consensus 99 Ak~~~l~ 105 (124)
T 2e5i_A 99 ARPTRLN 105 (124)
T ss_dssp CSCSCCC
T ss_pred ecCCcce
Confidence 9987643
No 187
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=114.34 Aligned_cols=78 Identities=10% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCcce-EEEeCCCCCCCHHH----HHHhhccC-CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee
Q 017735 107 FKTKK-IFVGGIPSSVNEDE----FKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 180 (367)
Q Consensus 107 ~~~~~-l~V~~lp~~~te~~----L~~~f~~~-G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~ 180 (367)
.++.| |||.|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|+++||+.+|.+++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34556 99999999999998 55899999 599998 22 89999999999999999999999999999
Q ss_pred eEeeecCCCCCCCC
Q 017735 181 VEVKKAEPKKPNLP 194 (367)
Q Consensus 181 l~v~~a~~~~~~~~ 194 (367)
|+|++|+.+.....
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99999998876543
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=4.1e-16 Score=139.19 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=78.9
Q ss_pred hccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCC---------CHHHHHHhhccCCceeEEEEeeCCCCCCccc
Q 017735 82 DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSV---------NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRG 152 (367)
Q Consensus 82 ~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~---------te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G 152 (367)
...++.++..............+.+...++|||+||+..+ +|++|+++|++||+|++|+|+.+ ++
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG 180 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KN 180 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GT
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CC
Confidence 3445556654433333222233456678999999999998 79999999999999999999864 78
Q ss_pred EEEEEeCCHHHHHHHHHhcCCccc------------CCeeeEeeecCCCCCC
Q 017735 153 FGFITFDTEQAVDDLLAKGNKLEL------------AGAQVEVKKAEPKKPN 192 (367)
Q Consensus 153 ~afV~F~~~~~a~~Al~~l~g~~~------------~g~~l~v~~a~~~~~~ 192 (367)
||||+|++.++|++|++.|++..| .++.|.|+||+....+
T Consensus 181 ~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 181 CGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 999999999999999999999999 8999999999876543
No 189
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=117.74 Aligned_cols=86 Identities=30% Similarity=0.577 Sum_probs=78.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +.+.|+++.|.
T Consensus 7 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPH----NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 82 (99)
T ss_dssp CSSCCEEEEESCCS----SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence 45678999999999 99999999999999999999999999899999999999999999999998 55589999999
Q ss_pred EeeccCCCCCC
Q 017735 93 IKRTIPKGAVG 103 (367)
Q Consensus 93 v~~~~~~~~~~ 103 (367)
|+++.++....
T Consensus 83 V~~a~~~~~~~ 93 (99)
T 2dgs_A 83 VKRAEPRDSKS 93 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEECCCCcccC
Confidence 99998775543
No 190
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=116.85 Aligned_cols=86 Identities=21% Similarity=0.350 Sum_probs=78.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|++.+ +.|.++.|
T Consensus 5 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSY----TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCT----TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999 9999999999999999999999999989999999999999999999999744 58999999
Q ss_pred EEeeccCCCCCC
Q 017735 92 EIKRTIPKGAVG 103 (367)
Q Consensus 92 ~v~~~~~~~~~~ 103 (367)
.|+++.++....
T Consensus 81 ~V~~a~~~~~~~ 92 (99)
T 1whw_A 81 HVLPSTIKKEAS 92 (99)
T ss_dssp EEEECCCCSTTC
T ss_pred EEEEcCCCcccc
Confidence 999998876543
No 191
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.5e-15 Score=114.46 Aligned_cols=80 Identities=30% Similarity=0.605 Sum_probs=73.3
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
...+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++ +.+.++++.|
T Consensus 7 ~~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i 82 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSW----DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVI 82 (87)
T ss_dssp CCSCTTEEEEECCCT----TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEE
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEE
Confidence 345778999999999 99999999999999999999999999999999999999999999999998 4457999999
Q ss_pred EEeec
Q 017735 92 EIKRT 96 (367)
Q Consensus 92 ~v~~~ 96 (367)
.|+++
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98864
No 192
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1e-15 Score=115.32 Aligned_cols=72 Identities=24% Similarity=0.529 Sum_probs=67.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccC----C-------ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcc
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 175 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~----G-------~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~ 175 (367)
.+.++|||+|||+++++++|+++|++| + +|.+++++.+ ++||||+|+++++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999998865 789999999999999999 999999
Q ss_pred cCCeeeEeee
Q 017735 176 LAGAQVEVKK 185 (367)
Q Consensus 176 ~~g~~l~v~~ 185 (367)
|.+++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 193
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.7e-15 Score=121.72 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~ 185 (367)
..+.++|||+|| ++++++|+++|++||+|+.|.|. ++++||||+|++.++|++||+.||+..|.+++|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 69999999999999999999986 4588999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 017735 186 AEPKKPN 192 (367)
Q Consensus 186 a~~~~~~ 192 (367)
++++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9877543
No 194
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=117.18 Aligned_cols=85 Identities=20% Similarity=0.369 Sum_probs=77.5
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+.+ +.|.++.|
T Consensus 12 ~~~~~~l~V~nlp~----~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSE----DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CSSSEEEEEESCCT----TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 45678999999999 9999999999999999999999999989999999999999999999999944 58999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99998877543
No 195
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=3.3e-15 Score=118.78 Aligned_cols=86 Identities=22% Similarity=0.401 Sum_probs=78.0
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||.|++|+|++++.++++++||||+|.+.++|++||+. .+.|.++.|
T Consensus 12 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 12 TSNHFHVFVGDLSP----EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp STTCEEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCcEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34678999999999 999999999999999999999999998999999999999999999999984 458999999
Q ss_pred EEeeccCCCCCC
Q 017735 92 EIKRTIPKGAVG 103 (367)
Q Consensus 92 ~v~~~~~~~~~~ 103 (367)
.|.++.++....
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999998775543
No 196
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=2.8e-15 Score=119.27 Aligned_cols=85 Identities=19% Similarity=0.343 Sum_probs=77.2
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+. ...|.++.|.
T Consensus 23 ~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 23 PEGANLFIYHLPQ----EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp STTCCEEEESCCS----SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4568999999999 999999999999999999999999998999999999999999999999984 4589999999
Q ss_pred EeeccCCCCCC
Q 017735 93 IKRTIPKGAVG 103 (367)
Q Consensus 93 v~~~~~~~~~~ 103 (367)
|+++.++....
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99988775543
No 197
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.6e-15 Score=117.41 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCC-----CCCHHHHHHhhccCCceeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHhcCCcccCCee
Q 017735 107 FKTKKIFVGGIPS-----SVNEDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 180 (367)
Q Consensus 107 ~~~~~l~V~~lp~-----~~te~~L~~~f~~~G~v~~v~i~~~~~~-g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~ 180 (367)
.++++|+|.||.. +.++++|+++|++||+|++|.|+.++.+ ++++|||||+|+++++|++|++.||+..|++++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999973 2378999999999999999999998654 688999999999999999999999999999999
Q ss_pred eEeeecCC
Q 017735 181 VEVKKAEP 188 (367)
Q Consensus 181 l~v~~a~~ 188 (367)
|+|+++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 198
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=117.52 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=78.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++ +.+.|.++.|
T Consensus 9 ~~~~~~l~V~nLp~----~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAE----EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCCCSCEEEESCCS----SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999 99999999999999999999999999899999999999999999999998 4458999999
Q ss_pred EEeeccCCCCCC
Q 017735 92 EIKRTIPKGAVG 103 (367)
Q Consensus 92 ~v~~~~~~~~~~ 103 (367)
.|+++.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2cqb_A 85 RVNLAKPMRIKE 96 (102)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999988775543
No 199
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=115.03 Aligned_cols=84 Identities=20% Similarity=0.436 Sum_probs=77.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.++++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|++ +.+.|+++.|.
T Consensus 3 ~~~~~l~v~nlp~----~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHF----NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 78 (95)
T ss_dssp SCCCEEEEESCCT----TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4678999999999 99999999999999999999999999899999999999999999999998 44589999999
Q ss_pred EeeccCCCCC
Q 017735 93 IKRTIPKGAV 102 (367)
Q Consensus 93 v~~~~~~~~~ 102 (367)
|+++.++...
T Consensus 79 V~~a~~~~~~ 88 (95)
T 2dnz_A 79 VGHVTERLDG 88 (95)
T ss_dssp EEESSCCCCC
T ss_pred EEEcccccCC
Confidence 9999877543
No 200
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=8.4e-16 Score=116.83 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=68.6
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCC--CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYG--EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G--~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
.+|||.||++ ++++++|+++|++|| +|++|+|+.++.+++++|||||+|.+.++|++|++ +.+.++++.|.|
T Consensus 2 ~~l~V~nL~~----~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTW----WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCT----TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCC----CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 4799999999 999999999999999 99999999999999999999999999999999998 445899999999
Q ss_pred eeccCCCC
Q 017735 94 KRTIPKGA 101 (367)
Q Consensus 94 ~~~~~~~~ 101 (367)
+.+.+...
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99877644
No 201
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=2.2e-15 Score=118.83 Aligned_cols=85 Identities=32% Similarity=0.613 Sum_probs=74.6
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-cccCCeEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQV 91 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-~~i~g~~i 91 (367)
...+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+.+ +.|+++.|
T Consensus 21 ~~~~~~~lfV~nLp~----~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l 96 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSW----QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI 96 (109)
T ss_dssp -----CCEEEESCCT----TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEE
T ss_pred cCCCCCEEEEeCCCC----CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence 345678999999999 9999999999999999999999999999999999999999999999999844 58999999
Q ss_pred EEeeccCCCC
Q 017735 92 EIKRTIPKGA 101 (367)
Q Consensus 92 ~v~~~~~~~~ 101 (367)
.|+++.++..
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999887644
No 202
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.2e-15 Score=126.91 Aligned_cols=82 Identities=18% Similarity=0.383 Sum_probs=76.0
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
++|||.|||.++++++|+++|++||+|.+|.|+.++ ++++++||||+|.++++|++|++.||+..|.+++|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 4779999999999999999999999999999999999999876
Q ss_pred CCC
Q 017735 190 KPN 192 (367)
Q Consensus 190 ~~~ 192 (367)
...
T Consensus 80 ~~~ 82 (166)
T 3md3_A 80 QQS 82 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 203
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=118.88 Aligned_cols=86 Identities=34% Similarity=0.645 Sum_probs=78.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ +.+.|+++.|.
T Consensus 13 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDW----STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCT----TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 45678999999999 99999999999999999999999999899999999999999999999998 55589999999
Q ss_pred EeeccCCCCCC
Q 017735 93 IKRTIPKGAVG 103 (367)
Q Consensus 93 v~~~~~~~~~~ 103 (367)
|+++.++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99988775543
No 204
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=119.43 Aligned_cols=86 Identities=29% Similarity=0.528 Sum_probs=77.2
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-cccCCeEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQV 91 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-~~i~g~~i 91 (367)
...+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.+ ..|+++.|
T Consensus 13 ~~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPY----HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCS----SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 345678999999999 9999999999999999999999999999999999999999999999999944 37999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.+....
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99998765443
No 205
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=113.34 Aligned_cols=81 Identities=25% Similarity=0.440 Sum_probs=72.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+..+|+|.||+. ++++++|+++|++||+|.+|+|++++.++++++||||+|.+.++|++|++. .+.+.++.|.
T Consensus 4 ~~~~~l~v~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSP----EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 79 (87)
T ss_dssp --CEEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCceEEEEeCCCC----CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4567999999999 999999999999999999999999998999999999999999999999994 4589999999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|+++.++
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9998765
No 206
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=115.34 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=77.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEE-EEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDS-VIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~-~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
.+.++|+|.||+. ++++++|+++|++||+|++| +|++++.++++++||||+|.++++|++|++. .+.|.++.|
T Consensus 3 ~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDP----EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCT----TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4678999999999 99999999999999999999 9999988999999999999999999999994 458999999
Q ss_pred EEeeccCCCCCC
Q 017735 92 EIKRTIPKGAVG 103 (367)
Q Consensus 92 ~v~~~~~~~~~~ 103 (367)
.|+++.++....
T Consensus 79 ~v~~a~~~~~~~ 90 (96)
T 1x5t_A 79 TVSYAFKKDSKG 90 (96)
T ss_dssp EEEESCCCCCCC
T ss_pred EEEEecccCCCC
Confidence 999998775543
No 207
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=117.65 Aligned_cols=85 Identities=26% Similarity=0.505 Sum_probs=77.5
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++ +...|+++.|
T Consensus 9 ~~~~~~l~v~nLp~----~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 9 ASDEGKLFVGGLSF----DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCSEEEEESCCT----TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCEEEEECCCC----CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45678999999999 99999999999999999999999999899999999999999999999998 4458999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|.++.++...
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99998876554
No 208
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=117.71 Aligned_cols=86 Identities=12% Similarity=0.290 Sum_probs=78.0
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--------ccc
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--------THI 85 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--------~~~ 85 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+. .+.
T Consensus 12 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 12 VTEGKTVFIRNLSF----DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCEEEESCCT----TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCCCEEEEECCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34678999999999 999999999999999999999999999999999999999999999999984 458
Q ss_pred cCCeEEEEeeccCCCCCC
Q 017735 86 INGKQVEIKRTIPKGAVG 103 (367)
Q Consensus 86 i~g~~i~v~~~~~~~~~~ 103 (367)
|+++.|.|+++.++....
T Consensus 88 ~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSSCEEEEECCCCCCCCC
T ss_pred EcCEEEEEEECCCCccCC
Confidence 999999999998775543
No 209
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=2.3e-15 Score=132.66 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=75.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+.++|||.|||.++++++|+++|++||+|+.|+|+.++.++++++||||+|.++++|++||+.||+..|.++.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999998877
Q ss_pred CCC
Q 017735 188 PKK 190 (367)
Q Consensus 188 ~~~ 190 (367)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 210
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=4.7e-15 Score=110.65 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=73.4
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEee
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKR 95 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~~ 95 (367)
.+|+|.||+. ++++++|+++|++||+|.+|.|++++.++++++||||+|.++++|++|++ +...++++.|.|++
T Consensus 2 ~~l~V~nlp~----~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNV----NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp EEEEEECCCT----TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred eEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 5799999999 99999999999999999999999999899999999999999999999998 44589999999999
Q ss_pred ccCCC
Q 017735 96 TIPKG 100 (367)
Q Consensus 96 ~~~~~ 100 (367)
+.+++
T Consensus 78 a~~~~ 82 (83)
T 3md1_A 78 AAKLE 82 (83)
T ss_dssp CCCCC
T ss_pred cCcCC
Confidence 87753
No 211
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=3.2e-15 Score=131.35 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=72.7
Q ss_pred CcceEEEeCCC-CCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 108 KTKKIFVGGIP-SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 108 ~~~~l~V~~lp-~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
+.++|||+||| +.+++++|+++|++||.|.+|+|+.+ +++||||+|+++++|++||+.||+..|.+++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999999876 3799999999999999999999999999999999998
Q ss_pred CCCC
Q 017735 187 EPKK 190 (367)
Q Consensus 187 ~~~~ 190 (367)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 212
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=117.09 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=77.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|.|++++.++++++||||+|.++++|++||+ +.+.|+++.|
T Consensus 10 ~~~~~~l~V~nLp~----~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 10 VDGMITLKVDNLTY----RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSCCCEEEEESCCT----TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCeEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 45678999999999 99999999999999999999999999999999999999999999999999 4458999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.+....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99998876543
No 213
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=117.13 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=77.8
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~ 90 (367)
...+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.+ +.|.++.
T Consensus 11 ~~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDE----KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCTTTEEEEECCCT----TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred cCCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 345678999999999 9999999999999999999999999989999999999999999999999944 5899999
Q ss_pred EEEeeccCCCCC
Q 017735 91 VEIKRTIPKGAV 102 (367)
Q Consensus 91 i~v~~~~~~~~~ 102 (367)
|.|+++.++...
T Consensus 87 l~v~~a~~~~~~ 98 (105)
T 1x5u_A 87 IRVNKASAHNKN 98 (105)
T ss_dssp CEEEETTTTSCC
T ss_pred EEEEECCCCCcC
Confidence 999998776543
No 214
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6e-15 Score=114.27 Aligned_cols=83 Identities=14% Similarity=0.314 Sum_probs=75.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|+|.||+. ++++++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++|++. .+.|+++.|
T Consensus 14 ~~~~~~l~v~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 14 SLEKHKLFISGLPF----SCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCCCSCEEEESCCT----TCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34578999999999 99999999999999999999999998 899999999999999999999984 458999999
Q ss_pred EEeeccCCCC
Q 017735 92 EIKRTIPKGA 101 (367)
Q Consensus 92 ~v~~~~~~~~ 101 (367)
.|+++.++..
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999877643
No 215
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=6.7e-16 Score=122.85 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=88.9
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|+|.||+. ++++++|+++|++||.|.+|.|+++. .+++||||+|.+.++|++|++. ...++++.|
T Consensus 5 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 5 PEVNRILYIRNLPY----KITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp TTCCSEEEEESCCT----TCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34678999999999 99999999999999999999999754 4689999999999999999994 458999999
Q ss_pred EEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCc
Q 017735 92 EIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGD 135 (367)
Q Consensus 92 ~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~ 135 (367)
.|.++.+.... .+++...++++|+++|++||.
T Consensus 78 ~v~~a~~~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 99998765432 466777889999999999874
No 216
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=116.18 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=72.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
..+..+|+|.||++ ++++++|+++|++|+. ++|+|++++ +++++|||||+|+++++|++||+ +.+.|.++.|+
T Consensus 12 ~~~~~~l~V~nLp~----~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPY----RATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCT----TCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 34667999999999 9999999999999994 599999998 89999999999999999999997 44589999999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|.++.+..
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 98876654
No 217
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4e-15 Score=114.75 Aligned_cols=85 Identities=21% Similarity=0.392 Sum_probs=76.2
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCC---CCCcceEEEEEeCCHHHHHHHHhh--ccccCCe
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRK---TGQPRGFGFVTYADPSVVDKVIED--THIINGK 89 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~---tg~srG~afV~f~~~~~a~~al~~--~~~i~g~ 89 (367)
.+.++|||.||++ ++++++|+++|++||+|++|+|++++. |+++++||||+|.+.++|++|++. .+.|+++
T Consensus 3 ~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNF----STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCCCEEEESCCT----TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4678999999999 999999999999999999999999886 668999999999999999999994 4589999
Q ss_pred EEEEeeccCCCCCC
Q 017735 90 QVEIKRTIPKGAVG 103 (367)
Q Consensus 90 ~i~v~~~~~~~~~~ 103 (367)
.|.|+++.++....
T Consensus 79 ~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 79 KLEVRISERATKPA 92 (98)
T ss_dssp ECEEECSSCSSCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999987765443
No 218
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8e-15 Score=114.23 Aligned_cols=85 Identities=12% Similarity=0.264 Sum_probs=75.9
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
...+..+|||.||++ ++++++|+++|++|+ |++|+|++++.++++++||||+|.++++|++||+ +...|.++.|
T Consensus 11 ~~~~~~~l~V~nLp~----~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 85 (103)
T 2dng_A 11 PTEPPYTAYVGNLPF----NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSL 85 (103)
T ss_dssp CSSSCEEEEEESCCT----TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCCeEEEEeCCCC----CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEE
Confidence 345678999999999 999999999999995 9999999999999999999999999999999995 3348999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dng_A 86 RVDIAEGRKQD 96 (103)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEecCCCCC
Confidence 99998876543
No 219
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=116.61 Aligned_cols=92 Identities=20% Similarity=0.391 Sum_probs=78.9
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEEee
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKR 95 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v~~ 95 (367)
++|+|.||+. ++++++|+++|++||+|++|+|+++ +++||||+|.++++|++|++ +...++++.|.|++
T Consensus 1 ~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGT----GAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCS----SCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred CEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 4799999999 9999999999999999999999987 67899999999999999999 44589999999999
Q ss_pred ccCCCCCCC------CCCCcceEEEeCCC
Q 017735 96 TIPKGAVGS------KDFKTKKIFVGGIP 118 (367)
Q Consensus 96 ~~~~~~~~~------~~~~~~~l~V~~lp 118 (367)
+.++..... ......+|||++|+
T Consensus 72 a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 72 STGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred ccCCCCcccCCCCCccccCCCceecCCCC
Confidence 877654322 22336789999996
No 220
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=113.10 Aligned_cols=81 Identities=23% Similarity=0.419 Sum_probs=73.9
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
..+.++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.+ ..|+++.|
T Consensus 12 ~~~~~~l~v~nlp~----~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 12 PDPNCCLGVFGLSL----YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCGGGCEEEESCCS----SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCC----CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34568999999999 9999999999999999999999999999999999999999999999999944 58999999
Q ss_pred EEeeccC
Q 017735 92 EIKRTIP 98 (367)
Q Consensus 92 ~v~~~~~ 98 (367)
.|+++.+
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9988753
No 221
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.8e-15 Score=115.70 Aligned_cols=84 Identities=11% Similarity=0.231 Sum_probs=75.6
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKT-GQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~t-g~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
..+..+|||.||++ ++++++|+++|++|| |++|+|++++.+ +++++||||+|.++++|++||+ +.+.|.++.|
T Consensus 12 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 86 (104)
T 1wi8_A 12 KSPPYTAFLGNLPY----DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI 86 (104)
T ss_dssp SSSCEEEEEESCCS----SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC
T ss_pred CCCCCEEEEeCCCC----cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE
Confidence 45678999999999 999999999999999 999999999987 8999999999999999999994 3358999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99998877553
No 222
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=7.9e-15 Score=116.95 Aligned_cols=84 Identities=25% Similarity=0.476 Sum_probs=76.4
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~ 90 (367)
...++++|||.||+. ++++++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++|++. ...|+++.
T Consensus 3 e~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 3 EADHPGKLFIGGLNR----ETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp TTCSCCEEEEECCTT----TCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 445778999999999 99999999999999999999999998 899999999999999999999984 45899999
Q ss_pred EEEeeccCCCC
Q 017735 91 VEIKRTIPKGA 101 (367)
Q Consensus 91 i~v~~~~~~~~ 101 (367)
|.|+++.++..
T Consensus 78 l~V~~a~~~~~ 88 (116)
T 2fy1_A 78 IKVEQAKKPSF 88 (116)
T ss_dssp CEEEECCCSSC
T ss_pred EEEEECCCCCC
Confidence 99999876654
No 223
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.9e-15 Score=118.04 Aligned_cols=83 Identities=33% Similarity=0.584 Sum_probs=76.3
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~ 94 (367)
+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +.+.|+++.|.|+
T Consensus 26 ~~~~l~V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSF----ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTT----CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEE
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEE
Confidence 457999999999 99999999999999999999999999899999999999999999999998 4458999999999
Q ss_pred eccCCCCC
Q 017735 95 RTIPKGAV 102 (367)
Q Consensus 95 ~~~~~~~~ 102 (367)
++.++...
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99887554
No 224
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.4e-15 Score=115.73 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=75.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.+.++|||.||+. ++++++|+++|++||+|++|.|++++.++++++||||+|.+.++|++|++ +.+.|.++.|.
T Consensus 21 ~~~~~l~V~nlp~----~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHE----EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp TTBEEEEEECCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3456899999999 99999999999999999999999999999999999999999999999998 44589999999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|+++.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99987764
No 225
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=3.9e-15 Score=112.60 Aligned_cols=81 Identities=17% Similarity=0.445 Sum_probs=74.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
.+.++|+|.||+. ++++++|+++|++||+|.+|+|++++.++++++||||+|.++++|++|+. +.+.++++.|.|
T Consensus 4 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 4 ADARSIYVGNVDY----GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 79 (89)
T ss_dssp HHHTEEEEESCCT----TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEE
T ss_pred CcCCEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEE
Confidence 3568999999999 99999999999999999999999999899999999999999999999995 445899999999
Q ss_pred eeccCC
Q 017735 94 KRTIPK 99 (367)
Q Consensus 94 ~~~~~~ 99 (367)
+++.++
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 988664
No 226
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.6e-15 Score=115.80 Aligned_cols=87 Identities=18% Similarity=0.347 Sum_probs=78.0
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeC-CCCCCcceEEEEEeCCHHHHHHHHhhc---cccCC
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKD-RKTGQPRGFGFVTYADPSVVDKVIEDT---HIING 88 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~tg~srG~afV~f~~~~~a~~al~~~---~~i~g 88 (367)
...+.++|||.||+. ++++++|+++|++||+|++|+|+++ +.++++++||||+|.+.++|++||+.+ +.|.+
T Consensus 11 ~~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 11 KKQTTSKILVRNIPF----QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCCCEEEESCCT----TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cCCCCCEEEEeCCCC----cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 345678999999999 9999999999999999999999999 788999999999999999999999854 58999
Q ss_pred eEEEEeeccCCCCCC
Q 017735 89 KQVEIKRTIPKGAVG 103 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~ 103 (367)
+.|.|+++.++....
T Consensus 87 ~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 87 RRLVLEWADSEVTVQ 101 (107)
T ss_dssp CBCEEEECCCCCCCC
T ss_pred CEEEEEeCCCCCCCC
Confidence 999999998775543
No 227
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.3e-15 Score=112.70 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=72.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++. ...|.++.|
T Consensus 13 ~~~~~~l~V~nlp~----~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPF----SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCTTSEEEESCCT----TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCC----CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34678999999999 999999999999999999999999998999999999999999999999984 458899999
Q ss_pred EEeec
Q 017735 92 EIKRT 96 (367)
Q Consensus 92 ~v~~~ 96 (367)
.|+++
T Consensus 89 ~v~~a 93 (94)
T 2e5h_A 89 KASIA 93 (94)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99876
No 228
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=116.13 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=72.6
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
..+.++|||.|||+ ++|+++|+++|++||+|++|.|++++. ++++|||||+|.++++|++||+ +.+.++++.|.
T Consensus 8 ~~~~~~lfV~~Lp~----~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~ 82 (103)
T 1s79_A 8 DVKNRSVYIKGFPT----DATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL 82 (103)
T ss_dssp CSGGGCEEEECCCT----TCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCE
T ss_pred cCCCCEEEEECCCC----CCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEE
Confidence 34568999999999 999999999999999999999999986 9999999999999999999999 44689999999
Q ss_pred EeeccC
Q 017735 93 IKRTIP 98 (367)
Q Consensus 93 v~~~~~ 98 (367)
|+++..
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 987644
No 229
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=6e-15 Score=113.39 Aligned_cols=82 Identities=11% Similarity=0.268 Sum_probs=75.4
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
++++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|++ +...+.++.|.|
T Consensus 1 P~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPY----DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCT----TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCC----CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 467999999999 99999999999999999999999999899999999999999999999998 445899999999
Q ss_pred eeccCCCC
Q 017735 94 KRTIPKGA 101 (367)
Q Consensus 94 ~~~~~~~~ 101 (367)
+++.++..
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99877644
No 230
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.57 E-value=4.6e-15 Score=111.20 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=73.0
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++ +...+.++.|
T Consensus 4 ~~~~~~l~V~nl~~----~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAE----EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCCSSEEEEECCCT----TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCC----CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45778999999999 99999999999999999999999998899999999999999999999997 4558999999
Q ss_pred EEeec
Q 017735 92 EIKRT 96 (367)
Q Consensus 92 ~v~~~ 96 (367)
.|+++
T Consensus 80 ~v~~a 84 (85)
T 3mdf_A 80 RVNLA 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99876
No 231
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-14 Score=113.39 Aligned_cols=84 Identities=10% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCCcceEEEeCCCCCCC-----------HHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 105 KDFKTKKIFVGGIPSSVN-----------EDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~t-----------e~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
...++++|+|.||....+ +++|+++|++||+|+.|.| .++ .++|||||+|+++++|++|++.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445789999999955433 6899999999999999966 553 3799999999999999999999999
Q ss_pred cccCCeeeEeeecCCCCCC
Q 017735 174 LELAGAQVEVKKAEPKKPN 192 (367)
Q Consensus 174 ~~~~g~~l~v~~a~~~~~~ 192 (367)
..|++++|+|+++.++...
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999887654
No 232
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=113.25 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=75.9
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|+.+ ++++++||||+|.+.++|++||+. ...|.++.|
T Consensus 12 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 12 RYQVVNLYVKNLDD----GIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CSSCCCEEEECCCT----TCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 44678999999999 9999999999999999999999998 789999999999999999999994 458999999
Q ss_pred EEeeccCCCCCC
Q 017735 92 EIKRTIPKGAVG 103 (367)
Q Consensus 92 ~v~~~~~~~~~~ 103 (367)
.|+++.++....
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2d9p_A 86 YVALAQRKEERQ 97 (103)
T ss_dssp EEEECSSCCCCC
T ss_pred EEEEecccccCC
Confidence 999998776543
No 233
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=6e-15 Score=119.91 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=75.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+.++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+. ...|+++.|.
T Consensus 44 ~~~~~l~V~nLp~----~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 44 DPNCCLGVFGLSL----YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCSSCBCEETCTT----SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4567999999999 999999999999999999999999999999999999999999999999994 4589999999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|+++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99987764
No 234
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.9e-15 Score=115.65 Aligned_cols=86 Identities=22% Similarity=0.391 Sum_probs=77.7
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCcc--------EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--h
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEIT--------DSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--D 82 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~ 82 (367)
...+.++|||.||+. ++++++|+++|++||.|+ .|+|+.++.++++++||||+|.+.++|++||+ +
T Consensus 11 ~~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 11 EDSDNSAIYVQGLND----SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCEEEEECCCT----TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred cCCCCCEEEEcCCCC----CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 345678999999999 999999999999999999 69999998899999999999999999999998 4
Q ss_pred ccccCCeEEEEeeccCCCCC
Q 017735 83 THIINGKQVEIKRTIPKGAV 102 (367)
Q Consensus 83 ~~~i~g~~i~v~~~~~~~~~ 102 (367)
.+.|.++.|.|+++.++...
T Consensus 87 g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TCEETTEECEEECSSCCCCS
T ss_pred CCccCCCEEEEEECCCCCCC
Confidence 55899999999998877554
No 235
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.6e-15 Score=113.41 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=74.9
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCcc-EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEIT-DSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQ 90 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~-~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~ 90 (367)
..++++|||.||+. ++++++|+++|++||+|+ +|+|++++.++++++||||+|.+.++|++|++.+ ..+.++.
T Consensus 6 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEP----YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCT----TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCC----CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 45678999999999 999999999999999999 9999999999999999999999999999999944 4788888
Q ss_pred ----EEEeeccCCC
Q 017735 91 ----VEIKRTIPKG 100 (367)
Q Consensus 91 ----i~v~~~~~~~ 100 (367)
|.|.++.+..
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 8888876653
No 236
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=6.8e-15 Score=125.10 Aligned_cols=84 Identities=29% Similarity=0.540 Sum_probs=76.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHHhcCCcccC---CeeeE
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTS--RSRGFGFITFDTEQAVDDLLAKGNKLELA---GAQVE 182 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g--~~~G~afV~F~~~~~a~~Al~~l~g~~~~---g~~l~ 182 (367)
+.++|||+|||.++++++|+++|++||+|.+|+|+.++.++ ++++||||+|.++++|++|++.||+..+. .++|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998876 89999999999999999999999998776 67888
Q ss_pred eeecCCCCC
Q 017735 183 VKKAEPKKP 191 (367)
Q Consensus 183 v~~a~~~~~ 191 (367)
+.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776544
No 237
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=1.1e-14 Score=122.26 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=76.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+. .+.|+++.|.
T Consensus 37 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSF----YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTCCEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3567999999999 999999999999999999999999999999999999999999999999994 4589999999
Q ss_pred EeeccCCCC
Q 017735 93 IKRTIPKGA 101 (367)
Q Consensus 93 v~~~~~~~~ 101 (367)
|+++.+...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999976543
No 238
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=5.3e-15 Score=115.81 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=76.3
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--cc---CC
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--II---NG 88 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i---~g 88 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|++.++ .+ .+
T Consensus 10 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 10 DHDAIKLFIGQIPR----NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CTTCEEEEEESCCT----TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 45678999999999 99999999999999999999999999999999999999999999999998544 45 78
Q ss_pred eEEEEeeccCCCCC
Q 017735 89 KQVEIKRTIPKGAV 102 (367)
Q Consensus 89 ~~i~v~~~~~~~~~ 102 (367)
+.|.|+++.++...
T Consensus 86 ~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 86 RPIQVKPADSESRG 99 (106)
T ss_dssp SCCEEEECCCCSCC
T ss_pred ceEEEEECCccccc
Confidence 99999998776543
No 239
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.8e-15 Score=115.29 Aligned_cols=81 Identities=11% Similarity=0.216 Sum_probs=71.2
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc----cccCC
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT----HIING 88 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~----~~i~g 88 (367)
...+..+|||.||++ ++++++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.+ ..|.+
T Consensus 12 ~~~~~~~LfV~nLp~----~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPI----DVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCCEEEECSCCT----TSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 455788999999999 9999999999999999999999975 589999999999999999843 46899
Q ss_pred eEEEEeeccCCCCCC
Q 017735 89 KQVEIKRTIPKGAVG 103 (367)
Q Consensus 89 ~~i~v~~~~~~~~~~ 103 (367)
+.|.|.++.++....
T Consensus 82 r~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 82 QPIYIQFSNHKELKT 96 (105)
T ss_dssp EECCBCCCSSSSCCC
T ss_pred EEEEEEEcCCCCCCc
Confidence 999999987765443
No 240
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=113.72 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=74.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++||+ +.+.|+++.|
T Consensus 12 ~~~~~~l~V~nlp~----~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 12 GRLGSTVFVANLDY----KVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCSCEEEESCCT----TCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 45678999999999 99999999999999999999999998 58999999999999999999998 4458999999
Q ss_pred EEeeccCCC
Q 017735 92 EIKRTIPKG 100 (367)
Q Consensus 92 ~v~~~~~~~ 100 (367)
.|+++....
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999886543
No 241
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.7e-15 Score=114.34 Aligned_cols=82 Identities=16% Similarity=0.311 Sum_probs=73.2
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccE-EEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITD-SVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~-~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
.+..+|||.||++ ++++++|+++|++|+.|.+ |+|+.+ .+++++|||||+|.++++|++||+ +.+.+.++.|+
T Consensus 13 ~~~~~l~V~nLp~----~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPF----GCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCT----TCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 4568999999999 9999999999999999988 888888 689999999999999999999998 55689999999
Q ss_pred EeeccCCCC
Q 017735 93 IKRTIPKGA 101 (367)
Q Consensus 93 v~~~~~~~~ 101 (367)
|..+.++..
T Consensus 88 v~~~~~~~~ 96 (104)
T 1wg5_A 88 IFKSSRAEV 96 (104)
T ss_dssp EEEECTTTS
T ss_pred EEECCHHHH
Confidence 988866543
No 242
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=117.60 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=73.8
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCc-cEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEI-TDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i-~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
..+..+|||.||++ ++++++|+++|++|+.| .+|+|++++ +++++|||||+|.++++|++||+ +.+.|.++.|
T Consensus 12 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPF----SITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCT----TSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEE
T ss_pred CCCccEEEEeCcCC----cCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEE
Confidence 34678999999999 99999999999999999 899999998 89999999999999999999998 4458999999
Q ss_pred EEeeccCC
Q 017735 92 EIKRTIPK 99 (367)
Q Consensus 92 ~v~~~~~~ 99 (367)
.|.++.++
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99887654
No 243
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=1.7e-14 Score=112.70 Aligned_cols=83 Identities=12% Similarity=0.231 Sum_probs=74.4
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCC---e
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIING---K 89 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g---~ 89 (367)
.+.++|||.||+. ++++++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++||+.+ ..+.+ +
T Consensus 13 ~~~~~l~v~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNK----QQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCEEEEESCCT----TCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 4578999999999 99999999999999999999999998 7999999999999999999999844 46777 9
Q ss_pred EEEEeeccCCCCC
Q 017735 90 QVEIKRTIPKGAV 102 (367)
Q Consensus 90 ~i~v~~~~~~~~~ 102 (367)
.|.|+++.++...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999998876543
No 244
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=6.4e-15 Score=124.47 Aligned_cols=80 Identities=35% Similarity=0.767 Sum_probs=74.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+.++|||+|||.++++++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++. ...|+++.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999996 468999999999876
Q ss_pred CC
Q 017735 188 PK 189 (367)
Q Consensus 188 ~~ 189 (367)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 245
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=9.6e-15 Score=114.92 Aligned_cols=83 Identities=19% Similarity=0.423 Sum_probs=75.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..++++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|++ +...|.++.|
T Consensus 23 ~~~~~~l~V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 23 SAGPMRLYVGSLHF----NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSSCEEEEEECCCS----SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34567999999999 99999999999999999999999999899999999999999999999998 4458999999
Q ss_pred EEeeccCCC
Q 017735 92 EIKRTIPKG 100 (367)
Q Consensus 92 ~v~~~~~~~ 100 (367)
.|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999887653
No 246
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=113.08 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=76.1
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhcc-CCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--c-cCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGK-YGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--I-INGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~-~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~-i~g~ 89 (367)
..+..+|||.||+. ++++++|+++|++ ||+|++|+|++++ ++++++||||+|.+.++|++||+.++ . |+++
T Consensus 6 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 6 SGPEYSLFVGDLTP----DVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp SSCCCCEEEECCCT----TCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCcEEEEeCCCC----CCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 45678999999999 9999999999999 9999999999999 89999999999999999999999554 6 8999
Q ss_pred EEEEeeccCCCCC
Q 017735 90 QVEIKRTIPKGAV 102 (367)
Q Consensus 90 ~i~v~~~~~~~~~ 102 (367)
.|.|+++.++...
T Consensus 81 ~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 81 PVRLSVAIPKASR 93 (104)
T ss_dssp CCCCCBCCCCCSC
T ss_pred eEEEEEccCCCcC
Confidence 9999998776543
No 247
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=9.9e-15 Score=120.06 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=76.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
.+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+.+ ..|.++.|.
T Consensus 40 ~~~~~l~V~nLp~----~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 40 DVLRNLMVNYIPT----TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp TTTSEEEEESCST----TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4457999999999 9999999999999999999999999989999999999999999999999954 489999999
Q ss_pred EeeccCCCCC
Q 017735 93 IKRTIPKGAV 102 (367)
Q Consensus 93 v~~~~~~~~~ 102 (367)
|+++.++...
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9998876544
No 248
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=4.9e-15 Score=108.37 Aligned_cols=74 Identities=36% Similarity=0.642 Sum_probs=68.5
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEeec
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~~ 96 (367)
+|+|.|||+ ++++++|+++|++||+|.+|.|++++.++++++||||+|.++++|++|++ +.+.++++.|.|+++
T Consensus 1 ~l~v~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSV----NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCS----SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCC----CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999 99999999999999999999999999899999999999999999999998 456889999988764
No 249
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=118.30 Aligned_cols=84 Identities=17% Similarity=0.364 Sum_probs=72.8
Q ss_pred HhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCc----cEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hc
Q 017735 9 LTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEI----TDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DT 83 (367)
Q Consensus 9 ~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i----~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~ 83 (367)
...+...+..+|+|.||++ ++++++|+++|++|++| .+|+|++++ +++++|||||+|+++++|++||+ +.
T Consensus 15 ~~~~~~~~~~~v~V~nLp~----~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~ 89 (123)
T 2dha_A 15 AQFLSKENQVIVRMRGLPF----TATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHK 89 (123)
T ss_dssp HHHHHCCSCCEEEECSCCT----TCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTT
T ss_pred HhhccCCCCCEEEEeCCCC----CCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCC
Confidence 3344456788999999999 99999999999999875 689999985 89999999999999999999998 45
Q ss_pred cccCCeEEEEeecc
Q 017735 84 HIINGKQVEIKRTI 97 (367)
Q Consensus 84 ~~i~g~~i~v~~~~ 97 (367)
+.|.++.|+|..+.
T Consensus 90 ~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 90 DLLGKRYIELFRST 103 (123)
T ss_dssp EESSSCEECCEEEC
T ss_pred CeeCCeEEEEEECC
Confidence 68889988887664
No 250
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=3.9e-15 Score=115.77 Aligned_cols=85 Identities=25% Similarity=0.499 Sum_probs=75.8
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEI 93 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v 93 (367)
..++++|||.||+. ++++++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++|+++.+.++++.|.|
T Consensus 6 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDV----RMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCT----TCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEE
Confidence 34568999999999 99999999999999999999999998 89999999999999999999999666899999999
Q ss_pred eeccCCCCCC
Q 017735 94 KRTIPKGAVG 103 (367)
Q Consensus 94 ~~~~~~~~~~ 103 (367)
.++.++....
T Consensus 81 ~~a~~~~~~~ 90 (102)
T 2xs2_A 81 GPAIRKQNLS 90 (102)
T ss_dssp EEEEECC---
T ss_pred EECCcCcchh
Confidence 9988765443
No 251
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=5.9e-15 Score=113.08 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=71.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
..+.+|+|.||++ ++++++|+++|++|+.|++++++.++.++++++||||+|.++++|++||+ +.+.|.++.|.
T Consensus 13 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPF----TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp --CEEEEEECCCT----TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 3468999999999 99999999999999999999999999899999999999999999999998 44589999999
Q ss_pred Eeecc
Q 017735 93 IKRTI 97 (367)
Q Consensus 93 v~~~~ 97 (367)
|+.+.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 98764
No 252
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=114.67 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=77.1
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCC-ccEEEEe-eCCCCCCcceEEEEEeCCHHHHHHHHhhc----cccC
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGE-ITDSVIM-KDRKTGQPRGFGFVTYADPSVVDKVIEDT----HIIN 87 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~-i~~~~i~-~~~~tg~srG~afV~f~~~~~a~~al~~~----~~i~ 87 (367)
+.+.++|||.||++ ++++++|+++|++||+ |++|.|+ .++.++++++||||+|.+.++|++|++.+ ..++
T Consensus 5 s~~~~~l~V~nLp~----~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 5 SSGNCRLFIGGIPK----MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CCCSEEEEEECCCT----TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred ccCCCEEEEeCCCC----cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 45678999999999 9999999999999998 9999999 78888899999999999999999999954 4789
Q ss_pred CeEEEEeeccCCCCCC
Q 017735 88 GKQVEIKRTIPKGAVG 103 (367)
Q Consensus 88 g~~i~v~~~~~~~~~~ 103 (367)
++.|.|.++.++....
T Consensus 81 g~~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 81 GHQIAVDWAEPEIDVD 96 (109)
T ss_dssp TBCCEEEESCSSCSTT
T ss_pred CCeEEEEEcCCCCCcC
Confidence 9999999998775543
No 253
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=110.89 Aligned_cols=84 Identities=19% Similarity=0.475 Sum_probs=74.6
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++. .+++||||+|.+.++|++|++. .+.|+++.|
T Consensus 12 ~~~~~~l~V~nlp~----~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 12 KSTPKRLHVSNIPF----RFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp SCCCCEEEEESCCT----TCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45678999999999 999999999999999999999999864 3899999999999999999984 458999999
Q ss_pred EEeeccCCCCCC
Q 017735 92 EIKRTIPKGAVG 103 (367)
Q Consensus 92 ~v~~~~~~~~~~ 103 (367)
.|+++.++....
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cq3_A 86 EVNNATARVMTN 97 (103)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEcccCCCCC
Confidence 999998775543
No 254
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=108.80 Aligned_cols=81 Identities=15% Similarity=0.330 Sum_probs=73.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
..+..+|+|.||++ ++++++|+++|++| .|.+|+|+++ .++++++||||+|.++++|++||+ +...|.++.|.
T Consensus 7 ~~~~~~l~v~nLp~----~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPF----NVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCS----SCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEE
T ss_pred CCCccEEEEECCCC----CCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEE
Confidence 45678999999999 99999999999999 9999999999 689999999999999999999999 33489999999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|.++.++.
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99987763
No 255
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.4e-15 Score=112.94 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=73.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
..+.+|+|.||++ ++++++|+++|++|+.|++++++.++.++++++||||+|.++++|++||+.+ +.|.++.|.
T Consensus 13 ~~~~~l~v~nLp~----~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPF----TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CSSEEEEEESCCT----TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3467899999999 9999999999999999999999999889999999999999999999999854 489999999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|+++...
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9987644
No 256
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=110.70 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=72.7
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~ 90 (367)
...+.++|+|.||++ ++++++|+++|++||+|++|+|++++. +++++||||+|.++++|++|++ +.+.++++.
T Consensus 12 ~~~~~~~l~v~nlp~----~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 12 QEEADRTVFVGNLEA----RVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp CTTGGGEEEEECCCT----TCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCC----CCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 445678999999999 999999999999999999999999985 8999999999999999999998 445899999
Q ss_pred EEEeecc
Q 017735 91 VEIKRTI 97 (367)
Q Consensus 91 i~v~~~~ 97 (367)
|.|+++.
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998764
No 257
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=111.21 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=73.1
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--h
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITD--------SVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--D 82 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~ 82 (367)
...+..+|+|.||+. ++++++|+++|++||.|++ |+|++++.+++++|||||+|.+.++|++|++ +
T Consensus 9 ~~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGE----NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEEECCCS----SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 345678999999999 9999999999999999999 9999999899999999999999999999998 4
Q ss_pred ccccCCeEEEEeec
Q 017735 83 THIINGKQVEIKRT 96 (367)
Q Consensus 83 ~~~i~g~~i~v~~~ 96 (367)
...+.++.|.|+++
T Consensus 85 g~~~~g~~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGNPIKVSFA 98 (99)
T ss_dssp TCBSSSSBCEEEEC
T ss_pred CCEeCCcEEEEEec
Confidence 45889999999876
No 258
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.5e-15 Score=108.21 Aligned_cols=75 Identities=33% Similarity=0.631 Sum_probs=69.7
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-cccCCeEEEEeec
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRT 96 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-~~i~g~~i~v~~~ 96 (367)
++|+|.|||. ++++++|+++|++||+|.+|.|++++.++++++||||+|.++++|++|++.+ +.++++.|.|+++
T Consensus 1 ~~l~v~nlp~----~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSW----QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCS----SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999 9999999999999999999999999989999999999999999999999933 6889999999876
No 259
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.55 E-value=7.3e-15 Score=113.94 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=74.4
Q ss_pred ccccceEeccCCCCCC--chhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCC-e
Q 017735 15 RQTTTQKMTGLSLTPV--TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIING-K 89 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~--~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g-~ 89 (367)
...++|||.|||+... .++++++|+++|++||+|++|+|++++.|++++|||||+|.++++|++||+. ...|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999986222 2789999999999999999999999999999999999999999999999984 458898 9
Q ss_pred EEEEeeccCC
Q 017735 90 QVEIKRTIPK 99 (367)
Q Consensus 90 ~i~v~~~~~~ 99 (367)
.|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999988654
No 260
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.3e-15 Score=114.21 Aligned_cols=83 Identities=19% Similarity=0.436 Sum_probs=75.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|.+|+|++++.++++++||||+|.+.++|++|++. ...+.++.|
T Consensus 5 ~~~~~~l~V~nlp~----~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 5 DRSLRSVFVGNIPY----EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHHHSCEEEESCCT----TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CCCccEEEEeCCCC----cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 34678999999999 999999999999999999999999998999999999999999999999984 458899999
Q ss_pred EEeeccCCC
Q 017735 92 EIKRTIPKG 100 (367)
Q Consensus 92 ~v~~~~~~~ 100 (367)
.|+++.++.
T Consensus 81 ~v~~a~~~~ 89 (104)
T 1p1t_A 81 RVDNAASEK 89 (104)
T ss_dssp EEEETTCTT
T ss_pred EEEeCCCcc
Confidence 999987653
No 261
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=1.3e-14 Score=114.36 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=75.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.+.++|||.||+. ++++++|+++|++||+|++|+|+.++.++++++||||+|.+.++|++|++ +...|.++.|.
T Consensus 24 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 24 VEGWILFVTSIHE----EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp TTBEEEEEESCCT----TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3557899999999 99999999999999999999999999899999999999999999999998 44589999999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|.++.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99987664
No 262
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.54 E-value=1.1e-14 Score=117.81 Aligned_cols=85 Identities=21% Similarity=0.372 Sum_probs=76.8
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|.|+.++.++++++||||+|.++++|++||+ +...|+++.|
T Consensus 19 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHE----EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CSSSEEEEEESCCT----TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34567999999999 99999999999999999999999999899999999999999999999998 4458999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 95 ~v~~a~~~~~~ 105 (126)
T 3ex7_B 95 SVDWCFVRGPP 105 (126)
T ss_dssp EEEESEESSSC
T ss_pred EEEEecCCCCC
Confidence 99998776543
No 263
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.5e-15 Score=110.47 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=70.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
.+.++|+|.||+. ++++++|+++|++||+|++|+|+.++.++++++||||+|.++++|++|++.+ ..++++.|+
T Consensus 3 ~~~~~l~v~nlp~----~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQP----GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCEEEEESCCT----TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 4678999999999 9999999999999999999999999989999999999999999999999944 477777776
Q ss_pred Eeec
Q 017735 93 IKRT 96 (367)
Q Consensus 93 v~~~ 96 (367)
+.++
T Consensus 79 ~~~~ 82 (85)
T 1x4e_A 79 QSGP 82 (85)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 6544
No 264
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=111.34 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=74.1
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~ 90 (367)
...+.++|||.||++ ++++++|+++|++||+|++|+|++++.+ +++||||+|.++++|++|++. .+.|.++.
T Consensus 11 ~~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSR----DVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CSCCCCEEEEESCCT----TCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEeCCCc----cCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 345678999999999 9999999999999999999999998643 689999999999999999984 45899999
Q ss_pred EEEeeccCCCCC
Q 017735 91 VEIKRTIPKGAV 102 (367)
Q Consensus 91 i~v~~~~~~~~~ 102 (367)
|.|+++.++...
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2cqi_A 85 VKVNWATTPSSQ 96 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEECCCCccc
Confidence 999998876543
No 265
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-15 Score=115.08 Aligned_cols=78 Identities=14% Similarity=0.301 Sum_probs=70.2
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~ 94 (367)
+..+|+|.||++ ++++++|+++|++| .|++|+|++++. ++++|||||+|+++++|++||+ +.+.|.++.|+|.
T Consensus 15 ~~~~v~V~nLp~----~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPF----SAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCS----SCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 456899999999 99999999999999 999999999975 9999999999999999999997 5568999999998
Q ss_pred eccCC
Q 017735 95 RTIPK 99 (367)
Q Consensus 95 ~~~~~ 99 (367)
.+.++
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 77543
No 266
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=113.97 Aligned_cols=80 Identities=11% Similarity=0.226 Sum_probs=70.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc----cccCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT----HIINGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~----~~i~g~ 89 (367)
..+.++|||.||++ ++++++|+++|++||+|++|+|+++ |+||||+|++.++|++|++.+ ..|.++
T Consensus 28 ~~ps~~LfVgNLp~----~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 28 GVPSRVIHIRKLPI----DVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp SSCCSEEEEESCCT----TCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 34567899999999 9999999999999999999999975 689999999999999999843 369999
Q ss_pred EEEEeeccCCCCCC
Q 017735 90 QVEIKRTIPKGAVG 103 (367)
Q Consensus 90 ~i~v~~~~~~~~~~ 103 (367)
.|.|.++.++....
T Consensus 98 ~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 98 PIYIQFSNHKELKT 111 (119)
T ss_dssp CCEEEECSSSSCCC
T ss_pred EEEEEEccCCCCCc
Confidence 99999998775544
No 267
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=109.39 Aligned_cols=81 Identities=17% Similarity=0.392 Sum_probs=73.6
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCC-cceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQ-PRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~-srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.+++|+|.||+. ++++++|+++|++||+|.+|.|+.++.+.. +++||||+|.++++|++|++ +...++++.|.
T Consensus 3 ~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTR----NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCT----TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 568999999999 999999999999999999999999987765 89999999999999999999 55689999999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|.++.+..
T Consensus 79 v~~a~~~~ 86 (88)
T 4a8x_A 79 ATAVLAPW 86 (88)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99887653
No 268
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=4.3e-15 Score=108.64 Aligned_cols=74 Identities=30% Similarity=0.478 Sum_probs=68.6
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEEeec
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRT 96 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~~ 96 (367)
+|+|.||+. ++++++|+++|++||+|.+|.|++++.++++++||||+|.++++|++|++ +.+.++++.|.|+++
T Consensus 1 ~l~v~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSP----DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCS----SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999 99999999999999999999999999899999999999999999999998 446899999988764
No 269
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=121.41 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=73.0
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCC--CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYG--EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G--~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
+.++|||.||++ ++++++|+++|++|| +|++|+|++|+.+++++|||||+|.+.++|++||+. ...|.++.|
T Consensus 54 ~~~~lfVgnLp~----~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSW----WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCT----TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 457999999999 999999999999999 999999999999999999999999999999999995 458999999
Q ss_pred EEeeccCC
Q 017735 92 EIKRTIPK 99 (367)
Q Consensus 92 ~v~~~~~~ 99 (367)
.|+++.++
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99988654
No 270
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=1.4e-14 Score=118.66 Aligned_cols=85 Identities=22% Similarity=0.439 Sum_probs=76.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+.++|||.||++ ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+. ...|.++.|.
T Consensus 45 ~~~~~l~V~nLp~----~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 45 EGMTSLKVDNLTY----RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp GGCCCEEEECCCS----SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3467899999999 999999999999999999999999998999999999999999999999984 4589999999
Q ss_pred EeeccCCCCCC
Q 017735 93 IKRTIPKGAVG 103 (367)
Q Consensus 93 v~~~~~~~~~~ 103 (367)
|+++.+.....
T Consensus 121 V~~a~~~~~~~ 131 (135)
T 2lea_A 121 VQMARYGRPPD 131 (135)
T ss_dssp EEECCCCCCCT
T ss_pred EEECCCCCCCc
Confidence 99988765443
No 271
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.8e-14 Score=107.36 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=63.8
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~v 93 (367)
.+.-|+|.||++ ++|+++|+++|.+||+|++++|+. +||||||+|.++++|++|++.+ .++.+++|.|
T Consensus 6 ~~~wL~VgNL~~----~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 6 GSSWLLLKNLTA----QIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCEEEEECCCT----TCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ccceEEEeCCCc----cCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 356789999999 999999999999999999999975 6899999999999999999955 4889999998
Q ss_pred eec
Q 017735 94 KRT 96 (367)
Q Consensus 94 ~~~ 96 (367)
+.+
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 766
No 272
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.53 E-value=2.7e-14 Score=111.94 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=72.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.+..+|+|.||+. ++++++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++|++ +...|.++.|.
T Consensus 27 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 27 ETGGKLLVSNLDF----GVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCSEEEEEESCCT----TCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4567999999999 99999999999999999999999999 89999999999999999999999 44589999999
Q ss_pred Eeecc
Q 017735 93 IKRTI 97 (367)
Q Consensus 93 v~~~~ 97 (367)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98864
No 273
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=2.9e-14 Score=131.13 Aligned_cols=84 Identities=18% Similarity=0.392 Sum_probs=76.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHH----HhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 180 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~----~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~ 180 (367)
...+.++|||+|||+++++++|+ ++|++||.|++|+|+. ++++++||||+|.+.++|++||+.||+..|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999977 8999999999999886 5778999999999999999999999999999999
Q ss_pred eEeeecCCCCC
Q 017735 181 VEVKKAEPKKP 191 (367)
Q Consensus 181 l~v~~a~~~~~ 191 (367)
|+|++++.+..
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 274
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=2.4e-14 Score=127.91 Aligned_cols=83 Identities=13% Similarity=0.235 Sum_probs=76.1
Q ss_pred CCCCcceEEEeCCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 105 KDFKTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~-~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
...+.++|||.|||. ++++++|+++|++||.|++|+|+.++ ++||||+|.++++|++|++.||+..|.+++|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345679999999999 99999999999999999999999875 789999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 017735 184 KKAEPKKPN 192 (367)
Q Consensus 184 ~~a~~~~~~ 192 (367)
+++..+...
T Consensus 105 ~~a~~~~~~ 113 (229)
T 2adc_A 105 TLSKHQNVQ 113 (229)
T ss_dssp ECCSCCCCC
T ss_pred EEecCcccc
Confidence 999876443
No 275
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=3e-14 Score=108.46 Aligned_cols=82 Identities=13% Similarity=0.328 Sum_probs=73.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|+|.||+. ++++++|+++|++||+|++|+|+++ ++++++||||+|.+.++|++|++. ...++++.|
T Consensus 5 ~~~~~~l~V~nlp~----~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPF----DFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCT----TCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999 9999999999999999999999984 788999999999999999999994 458999999
Q ss_pred EEeeccCCCC
Q 017735 92 EIKRTIPKGA 101 (367)
Q Consensus 92 ~v~~~~~~~~ 101 (367)
.|+++.+...
T Consensus 79 ~v~~a~~~~~ 88 (92)
T 2dgv_A 79 DVRIDRNASG 88 (92)
T ss_dssp CCEECSCCSS
T ss_pred EEEEcCCCCC
Confidence 9999877654
No 276
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.1e-15 Score=116.39 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=73.6
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
.+.++|||.||++ ++++++|+++|++||+|++|+|+.++.++++++||||+|.+.++|++||. +.+.|+++.|.|
T Consensus 23 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAA----RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCT----TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEE
Confidence 3457999999999 99999999999999999999999999999999999999999999999994 345899999999
Q ss_pred eeccCC
Q 017735 94 KRTIPK 99 (367)
Q Consensus 94 ~~~~~~ 99 (367)
+++.++
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 987654
No 277
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=7.2e-15 Score=113.92 Aligned_cols=84 Identities=10% Similarity=0.233 Sum_probs=70.9
Q ss_pred hhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCC-CCCCcceEEEEEeCCHHHHHHHHh-hccccCC
Q 017735 11 MFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDR-KTGQPRGFGFVTYADPSVVDKVIE-DTHIING 88 (367)
Q Consensus 11 ~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~tg~srG~afV~f~~~~~a~~al~-~~~~i~g 88 (367)
.......++|||.||+. ++++++|+++|++|| |++|+|++++ .++++++||||+|.+.++|++|++ +...|.+
T Consensus 13 ~~~~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPY----DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp -------CEEEESCCSS----CCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred cCCCCCCcEEEEeCCCC----CCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 34455678999999999 999999999999999 9999999998 689999999999999999999995 3458999
Q ss_pred eEEEEeeccCC
Q 017735 89 KQVEIKRTIPK 99 (367)
Q Consensus 89 ~~i~v~~~~~~ 99 (367)
+.|.|+++.++
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999988765
No 278
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=2.2e-14 Score=114.67 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=72.0
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCC---ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGE---ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~ 89 (367)
..+..+|||.||++ ++++++|+++|++|+. |++|+|++++. ++++|||||+|.++++|++||+ +.+.|.++
T Consensus 14 ~~~~~~l~V~nLp~----~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPW----SCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp BCCCCEEEEESCCT----TCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred CCCCcEEEEeCCCC----CCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 34567899999999 9999999999999999 89999999986 9999999999999999999999 44588999
Q ss_pred EEEEeeccC
Q 017735 90 QVEIKRTIP 98 (367)
Q Consensus 90 ~i~v~~~~~ 98 (367)
.|+|.++.+
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999987743
No 279
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.3e-14 Score=115.90 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=72.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++|++. ...|+++.|
T Consensus 37 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 37 GPEGCNLFIYHLPQ----EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCSEEEEEECSCT----TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34567999999999 999999999999999999999999998999999999999999999999995 457899999
Q ss_pred EEeec
Q 017735 92 EIKRT 96 (367)
Q Consensus 92 ~v~~~ 96 (367)
.|+++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 98875
No 280
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=1.9e-14 Score=117.77 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=71.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCC---ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGE---ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQ 90 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~ 90 (367)
.+..+|||.||++ ++|+++|+++|++|+. |++|+|++++. ++++|||||+|+++++|++||+ +.+.|.++.
T Consensus 42 ~~~~~lfVgnLp~----~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 42 GEGFVVKLRGLPW----SCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CTTCEEEEESCCT----TCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 4567899999999 9999999999999999 89999999986 9999999999999999999999 445899999
Q ss_pred EEEeeccC
Q 017735 91 VEIKRTIP 98 (367)
Q Consensus 91 i~v~~~~~ 98 (367)
|+|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99987743
No 281
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=2.2e-14 Score=115.60 Aligned_cols=83 Identities=17% Similarity=0.428 Sum_probs=75.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
.+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +.+.|.++.|.|
T Consensus 34 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDY----GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECT----TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 3567999999999 99999999999999999999999998899999999999999999999995 445899999999
Q ss_pred eeccCCCC
Q 017735 94 KRTIPKGA 101 (367)
Q Consensus 94 ~~~~~~~~ 101 (367)
+++.+...
T Consensus 110 ~~a~~~~~ 117 (124)
T 2jwn_A 110 LPKRTNMP 117 (124)
T ss_dssp EESSCCCS
T ss_pred EECCCCCC
Confidence 98876543
No 282
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.52 E-value=5e-14 Score=113.51 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=75.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.+.++|+|.||+. ++++++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++|++ +...|.++.|.
T Consensus 33 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 33 ETGAKLLVSNLDF----GVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp SSCEEEEEESCCS----SCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4457999999999 99999999999999999999999998 89999999999999999999999 44589999999
Q ss_pred EeeccCCCCCC
Q 017735 93 IKRTIPKGAVG 103 (367)
Q Consensus 93 v~~~~~~~~~~ 103 (367)
|+++.+.....
T Consensus 108 V~~a~~~~~~~ 118 (124)
T 2kt5_A 108 IQLVASQIDLE 118 (124)
T ss_dssp EEEECCTTCCC
T ss_pred EEEeCCCCCCC
Confidence 99987765433
No 283
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=8.4e-15 Score=119.37 Aligned_cols=83 Identities=16% Similarity=0.332 Sum_probs=74.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccE--EEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--cc----c
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITD--SVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--TH----I 85 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~--~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~----~ 85 (367)
..+.++|||.||++ ++++++|+++|++||+|+. |+|++++.|+++||||||+|.+. +|++|++. .. .
T Consensus 20 ~~~~~~lfV~nL~~----~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNP----HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCT----TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 34567999999999 9999999999999999966 99999999999999999999999 99999984 34 7
Q ss_pred cCCeEEEEeeccCCCC
Q 017735 86 INGKQVEIKRTIPKGA 101 (367)
Q Consensus 86 i~g~~i~v~~~~~~~~ 101 (367)
|+++.|.|+++.++..
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 8999999999877644
No 284
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=112.04 Aligned_cols=82 Identities=23% Similarity=0.333 Sum_probs=73.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHH---HhhccCCCccEEEEeeCCCCC---CcceEEEEEeCCHHHHHHHHhh--cccc
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFI---KHFGKYGEITDSVIMKDRKTG---QPRGFGFVTYADPSVVDKVIED--THII 86 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~---~~F~~~G~i~~~~i~~~~~tg---~srG~afV~f~~~~~a~~al~~--~~~i 86 (367)
.+.++|||.||++ ++++++|+ ++|++||+|++|.|++++.++ ++++||||+|+++++|++||+. .+.|
T Consensus 13 ~~~~~l~V~nLp~----~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQ----RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCSSCEEEEEECT----TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCCEEEEECCCC----CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 4577999999999 99999999 999999999999999988654 5679999999999999999994 4589
Q ss_pred CCeEEEEeeccCCC
Q 017735 87 NGKQVEIKRTIPKG 100 (367)
Q Consensus 87 ~g~~i~v~~~~~~~ 100 (367)
+++.|.|.++.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998775
No 285
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=108.79 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=69.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc----cccCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT----HIINGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~----~~i~g~ 89 (367)
..+.++|||.||++ ++++++|+++|++||.|++|.|+++ |+||||+|++.++|++|++.+ ..+.++
T Consensus 12 ~~p~~~l~V~nLp~----~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 12 GAPSRVLHIRKLPG----EVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp SSCCSEEEEESCCT----TCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 34567999999999 9999999999999999999998865 679999999999999999843 369999
Q ss_pred EEEEeeccCCCCC
Q 017735 90 QVEIKRTIPKGAV 102 (367)
Q Consensus 90 ~i~v~~~~~~~~~ 102 (367)
.|.|.++.++...
T Consensus 82 ~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 PIYIQYSNHKELK 94 (101)
T ss_dssp ECEEEECSCSSCC
T ss_pred EEEEEEcCcccCc
Confidence 9999998766543
No 286
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=113.28 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=71.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCC---CCcceEEEEEeCCHHHHHHHHhhccccCCeE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKT---GQPRGFGFVTYADPSVVDKVIEDTHIINGKQ 90 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~t---g~srG~afV~f~~~~~a~~al~~~~~i~g~~ 90 (367)
....++|||.||++ ++++++|+++|++||+|+ +.++.++.+ +++++||||+|+++++|++||+.++.++++.
T Consensus 5 ~~~~~~lfVgnLp~----~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 5 SSGSRKVFVGGLPP----DIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SSCCCCEEEECCCT----TCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCCEEEEcCCCC----CCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 35678999999999 999999999999999999 888888877 6999999999999999999999888899999
Q ss_pred EEEeecc
Q 017735 91 VEIKRTI 97 (367)
Q Consensus 91 i~v~~~~ 97 (367)
+.+..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 9886543
No 287
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=110.42 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=71.8
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~ 90 (367)
...+.++|||.||+. ++++++|+++|++||+|++|+|+.+ +++++||||+|++.++|++||+. ...|+++.
T Consensus 18 ~~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPP----DIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp CCCCSSEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345678999999999 9999999999999999999999654 45899999999999999999974 45899999
Q ss_pred EEEeeccCCCC
Q 017735 91 VEIKRTIPKGA 101 (367)
Q Consensus 91 i~v~~~~~~~~ 101 (367)
|.|+++.++..
T Consensus 91 l~V~~a~~~~~ 101 (109)
T 1x4a_A 91 LRVEFPRSGRG 101 (109)
T ss_dssp CEEECCCCCCC
T ss_pred EEEEEcccCCC
Confidence 99999877654
No 288
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=108.94 Aligned_cols=80 Identities=6% Similarity=0.084 Sum_probs=71.4
Q ss_pred ccccceEeccCCCCCCchhhHHHHH----HhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCC
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFI----KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIING 88 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g 88 (367)
.+..+|||.||++ ++++++|+ ++|++||+|++|+|++++.+ ++||||+|.++++|++|++.+ ..|.+
T Consensus 7 ~~~~~l~V~nL~~----~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 7 GNGADVQVSNIDY----RLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp SSCEEEEEESCCT----TSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCC----CCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3567899999999 99999999 99999999999999998865 889999999999999999944 48999
Q ss_pred eEEEEeeccCCCC
Q 017735 89 KQVEIKRTIPKGA 101 (367)
Q Consensus 89 ~~i~v~~~~~~~~ 101 (367)
+.|.|+++.+...
T Consensus 80 r~l~V~~a~~~~~ 92 (96)
T 2dgx_A 80 KKILVSLATGASG 92 (96)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999876643
No 289
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1e-14 Score=117.71 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=72.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
.+..+|||.||++ ++++++|+++|++||.|.++.++.+..+++++|||||+|.++++|++||+ +.+.|.++.|.|
T Consensus 23 ~~~~~l~V~nLp~----~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPF----EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCT----TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEE
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 4567999999999 99999999999999999997777777799999999999999999999999 445899999999
Q ss_pred eeccCC
Q 017735 94 KRTIPK 99 (367)
Q Consensus 94 ~~~~~~ 99 (367)
.++.++
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 290
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=4.2e-14 Score=110.56 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCcceEEEeCC--CCCCC--------HHHHHHhhccCCceeEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHhcCCc
Q 017735 107 FKTKKIFVGGI--PSSVN--------EDEFKDFFMQFGDVQEHQIMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKL 174 (367)
Q Consensus 107 ~~~~~l~V~~l--p~~~t--------e~~L~~~f~~~G~v~~v~i~~~~~~--g~~~G~afV~F~~~~~a~~Al~~l~g~ 174 (367)
.+++.|.|.|+ |.++. ++||+++|++||+|++|.|++++.+ .+++|+|||+|+++++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788899998 33343 3689999999999999999988754 468999999999999999999999999
Q ss_pred ccCCeeeEeeecCC
Q 017735 175 ELAGAQVEVKKAEP 188 (367)
Q Consensus 175 ~~~g~~l~v~~a~~ 188 (367)
.|++++|+|+++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 291
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=3.2e-14 Score=107.87 Aligned_cols=79 Identities=28% Similarity=0.420 Sum_probs=65.6
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVE 92 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~ 92 (367)
...+..+|||.+|++ ++++++|+++|++||+|++|+|+++ +||||||+|+++++|+++......+.++.|.
T Consensus 7 ~~~~~~~l~V~~Lp~----~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTE----DMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCT----TCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEE
Confidence 445788999999999 9999999999999999999999874 7899999999999999766665567899999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987764
No 292
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.51 E-value=2.4e-14 Score=127.94 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=72.4
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCC--CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYG--EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G--~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
..++|||.||++ ++++++|+++|++|| +|++|+|++++.|+++|+||||+|++.++|++||+.+ +.|+++.|
T Consensus 67 ~~~~lfVgnL~~----~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTW----WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCT----TCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCC----CCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 456799999999 999999999999999 9999999999999999999999999999999999954 58999999
Q ss_pred EEeeccCC
Q 017735 92 EIKRTIPK 99 (367)
Q Consensus 92 ~v~~~~~~ 99 (367)
.|+++.+.
T Consensus 143 ~V~~a~~~ 150 (229)
T 3q2s_C 143 VVTPVNKQ 150 (229)
T ss_dssp EEEECCHH
T ss_pred EEEECCCC
Confidence 99987543
No 293
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=1.2e-14 Score=117.16 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=70.4
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCcc--EEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEIT--DSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQV 91 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~--~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i 91 (367)
.+..+|||.||++ ++++++|+++|++| .|+ +|+|++++. ++++|||||+|+++++|++||+ +...|.++.|
T Consensus 40 ~~~~~lfVgnLp~----~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPF----GCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCT----TCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 4567899999999 99999999999999 777 899999986 9999999999999999999998 4468899999
Q ss_pred EEeeccCC
Q 017735 92 EIKRTIPK 99 (367)
Q Consensus 92 ~v~~~~~~ 99 (367)
+|..+.++
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 98877543
No 294
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=3.8e-14 Score=123.38 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=74.1
Q ss_pred CcceEEEeCCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeec
Q 017735 108 KTKKIFVGGIPS-SVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 186 (367)
Q Consensus 108 ~~~~l~V~~lp~-~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a 186 (367)
..++|||+|||. ++++++|+++|++||.|..|+|+.++ ++||||+|.++++|++|++.||+..|.+++|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999999874 789999999999999999999999999999999999
Q ss_pred CCCCCC
Q 017735 187 EPKKPN 192 (367)
Q Consensus 187 ~~~~~~ 192 (367)
..+...
T Consensus 77 ~~~~~~ 82 (198)
T 1qm9_A 77 KHQNVQ 82 (198)
T ss_dssp CCCSCC
T ss_pred cCCCcC
Confidence 876543
No 295
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=1.3e-14 Score=110.10 Aligned_cols=79 Identities=24% Similarity=0.477 Sum_probs=69.6
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEEee
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKR 95 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~ 95 (367)
++|+|.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.+.+ |++|++. ...+.++.|.|++
T Consensus 2 ~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVY----SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECT----TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCC----CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 5799999999 9999999999999999999999999989999999999999999 9999984 4589999999999
Q ss_pred ccCCCC
Q 017735 96 TIPKGA 101 (367)
Q Consensus 96 ~~~~~~ 101 (367)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 877644
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=1.4e-14 Score=118.96 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=71.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEI 93 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~v 93 (367)
.+..+|||.||++ ++++++|+++|++|+ |++|+|++++. ++++|||||+|+++++|++||+ +.+.|.++.|+|
T Consensus 44 ~~~~~lfV~nLp~----~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPY----KATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCT----TCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence 4567999999999 999999999999999 77999999985 9999999999999999999996 445899999999
Q ss_pred eeccCCC
Q 017735 94 KRTIPKG 100 (367)
Q Consensus 94 ~~~~~~~ 100 (367)
..+.+..
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8876654
No 297
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=6.9e-14 Score=127.43 Aligned_cols=81 Identities=27% Similarity=0.508 Sum_probs=73.7
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 103 GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 103 ~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
.....+.++|||+|||.++|+++|+++|++||.|..|.|.++ ++||||+|.++++|++|++.||+..|.+++|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 344556789999999999999999999999999999999754 78999999999999999999999999999999
Q ss_pred eeecCCC
Q 017735 183 VKKAEPK 189 (367)
Q Consensus 183 v~~a~~~ 189 (367)
|.++.+.
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9998753
No 298
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=107.52 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=68.3
Q ss_pred HHhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc---
Q 017735 8 ILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--- 84 (367)
Q Consensus 8 ~~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--- 84 (367)
........++++|+|.||+. ++++++|+++|++||.|++|+|++ +|+||||+|++.++|++|++.++
T Consensus 12 ~~~~~~~~ps~~l~V~NLp~----~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 12 YDDPHKTPASPVVHIRGLID----GVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp -----CCCCCSEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred ccccccCCCCcEEEEeCCCC----CCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCC
Confidence 33444556788999999999 999999999999999999999985 35799999999999999998543
Q ss_pred -ccCCeEEEEeeccCC
Q 017735 85 -IINGKQVEIKRTIPK 99 (367)
Q Consensus 85 -~i~g~~i~v~~~~~~ 99 (367)
.+.+++|.|..+.++
T Consensus 82 ~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 82 IYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp EEETTEEEEEEECSCS
T ss_pred ceeCCcEEEEEecccc
Confidence 378999999998765
No 299
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7.8e-14 Score=108.80 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=68.8
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc----cccCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT----HIINGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~----~~i~g~ 89 (367)
..+..+|||.||++ ++++++|+++|++||+|++|+|+++ |+||||+|++.++|++|++.+ ..|.++
T Consensus 12 ~~p~~~l~V~nLp~----~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 12 VSVSPVVHVRGLCE----SVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCCSEEEEESCCS----SCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 34568999999999 9999999999999999999999864 679999999999999999843 248999
Q ss_pred EEEEeeccCCCCC
Q 017735 90 QVEIKRTIPKGAV 102 (367)
Q Consensus 90 ~i~v~~~~~~~~~ 102 (367)
.|.|.++.++...
T Consensus 82 ~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 QAFFNYSTSKRIT 94 (104)
T ss_dssp BCEEEECSSSSCC
T ss_pred EEEEEEccCcccc
Confidence 9999998776543
No 300
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=5.7e-14 Score=118.03 Aligned_cols=83 Identities=23% Similarity=0.447 Sum_probs=75.9
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v 93 (367)
...+|||.||++ ++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+. .+.|.++.|.|
T Consensus 69 ~~~~l~v~nl~~----~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 69 GMTSLKVDNLTY----RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp BCCEEEEESCCT----TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 357999999999 999999999999999999999999998999999999999999999999984 45899999999
Q ss_pred eeccCCCCC
Q 017735 94 KRTIPKGAV 102 (367)
Q Consensus 94 ~~~~~~~~~ 102 (367)
.++.+....
T Consensus 145 ~~a~~~~~~ 153 (158)
T 2kn4_A 145 QMARYGRPP 153 (158)
T ss_dssp EEECCSSCC
T ss_pred EECCCCCCC
Confidence 999876543
No 301
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-13 Score=103.69 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=59.6
Q ss_pred CCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCCCCCC
Q 017735 119 SSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 193 (367)
Q Consensus 119 ~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~~~~~ 193 (367)
..+++++|+++|++||+|+.|.|+. +++|||||+|+++++|++||+.++. +.+++|+|+|++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 4689999999999999999999983 5799999999999999999998554 679999999998776543
No 302
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=110.51 Aligned_cols=79 Identities=11% Similarity=0.207 Sum_probs=68.9
Q ss_pred cccccceEeccCCCCCCch-hhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc----cccCC
Q 017735 14 NRQTTTQKMTGLSLTPVTE-PALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT----HIING 88 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~----~~i~g 88 (367)
..+.++|||.||++ + +++++|+++|++||+|++|+|++ +|+||||+|++.++|++|++.+ ..|.+
T Consensus 22 ~~p~~~l~V~NLp~----~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 22 QELGRVIHLSNLPH----SGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SCCCCEEEEESCCC----SSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCCEEEEeCCCC----ccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34577999999999 8 99999999999999999999984 4689999999999999999844 35899
Q ss_pred eEEEEeeccCCCCC
Q 017735 89 KQVEIKRTIPKGAV 102 (367)
Q Consensus 89 ~~i~v~~~~~~~~~ 102 (367)
+.|.|.++..+...
T Consensus 92 r~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 92 RCVKVDLSEKYKKL 105 (112)
T ss_dssp SCCEEEEECSCSSS
T ss_pred EEEEEEECcccccc
Confidence 99999998776544
No 303
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=106.53 Aligned_cols=82 Identities=27% Similarity=0.456 Sum_probs=73.0
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|+.| .+|++++++.++++++||||+|.++++|++||+ +.+.|.++.|
T Consensus 12 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 12 SQPSKTLFVKGLSE----DTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SCCCSSEEEECCCT----TCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCC----ccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 45678999999999 99999999999976 578899998899999999999999999999998 4558999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999877553
No 304
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=109.56 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=69.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--cc-----
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--II----- 86 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i----- 86 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++|++.++ .|
T Consensus 22 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 22 EQDPTNLYISNLPL----SMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCTTEEEEESCCT----TCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 34568999999999 99999999999999999999999998 89999999999999999999999543 45
Q ss_pred ---CCeEEEEeeccC
Q 017735 87 ---NGKQVEIKRTIP 98 (367)
Q Consensus 87 ---~g~~i~v~~~~~ 98 (367)
.++.|.|+++.+
T Consensus 97 ~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGP 111 (114)
T ss_dssp SCCCSSCBEEEECCC
T ss_pred ccCCCCceeEEccCC
Confidence 456666666654
No 305
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.48 E-value=8e-14 Score=118.15 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=74.9
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+..+|||.||++ ++++++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++||+. ...|.++.|.
T Consensus 70 ~~~~~l~V~nLp~----~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 70 VEGWILFVTSIHE----EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp C-CEEEEEESCCT----TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456899999999 999999999999999999999999999999999999999999999999984 4589999999
Q ss_pred EeeccCCCCC
Q 017735 93 IKRTIPKGAV 102 (367)
Q Consensus 93 v~~~~~~~~~ 102 (367)
|.++.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9998776543
No 306
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=7.9e-14 Score=114.56 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=71.0
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
.+.++|||.||+. ++++++|+++|++||+|++|+|++++.++++++||||+|.++++|++|++.+ ..|.++.|.
T Consensus 61 ~~~~~l~v~nlp~----~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 61 TTKRVLYVGGLAE----EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCCEEEEECCCT----TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCcEEEEEeCCC----CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3567999999999 9999999999999999999999999989999999999999999999999844 478999999
Q ss_pred Eeec
Q 017735 93 IKRT 96 (367)
Q Consensus 93 v~~~ 96 (367)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 8764
No 307
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=108.55 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=73.5
Q ss_pred HhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hcccc
Q 017735 9 LTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHII 86 (367)
Q Consensus 9 ~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i 86 (367)
.........++|||.||+. ++++++|+++|++||+|++|+|+++ ++||||+|.+.++|++|++ +...|
T Consensus 17 ~~~~~~~~~~~l~V~nl~~----~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 17 VVNQSSPKNCTVYCGGIAS----GLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI 86 (109)
T ss_dssp HHHHSCSSCCEEEEECCSS----CCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cccCCCCCCcEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3344556778999999999 9999999999999999999999976 5799999999999999998 44589
Q ss_pred CCeEEEEeeccCCCCCC
Q 017735 87 NGKQVEIKRTIPKGAVG 103 (367)
Q Consensus 87 ~g~~i~v~~~~~~~~~~ 103 (367)
.++.|.|.++.++....
T Consensus 87 ~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 87 EGHVVKCYWGKESPDMT 103 (109)
T ss_dssp TTEECEEECCCCCCSSC
T ss_pred CCcEEEEEecCCCCCCC
Confidence 99999999988775543
No 308
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=1.7e-14 Score=123.01 Aligned_cols=85 Identities=16% Similarity=0.359 Sum_probs=74.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEee
Q 017735 105 KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 184 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~ 184 (367)
...+.++|||+|||.++++++|+++|++|+.|.. .++.+..++++++||||+|.++++|++||+ ||+..|.+++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4456789999999999999999999999998776 334444678899999999999999999994 99999999999999
Q ss_pred ecCCCCC
Q 017735 185 KAEPKKP 191 (367)
Q Consensus 185 ~a~~~~~ 191 (367)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987654
No 309
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.9e-14 Score=109.82 Aligned_cols=80 Identities=21% Similarity=0.525 Sum_probs=71.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|++++. .+++||||+|.+.++|++|++. ...|+++.|
T Consensus 26 ~~~~~~l~V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 26 KSQPKRLHVSNIPF----RFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp TTCCCEEEEESCCT----TCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCC----cCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34567999999999 999999999999999999999999863 4899999999999999999984 458999999
Q ss_pred EEeeccCC
Q 017735 92 EIKRTIPK 99 (367)
Q Consensus 92 ~v~~~~~~ 99 (367)
.|+++.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998765
No 310
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=106.85 Aligned_cols=81 Identities=17% Similarity=0.377 Sum_probs=70.5
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
..+.++|||.||++ ++++++|+++|++|++| +|+++ .++++++||||+|.++++|++||+.+ +.|.++.|
T Consensus 12 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 12 SGESKTLVLSNLSY----SATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp SCCCSEEEEESCCT----TCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 45678999999999 99999999999999876 56666 57899999999999999999999944 48999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 84 ~v~~a~~~~~~ 94 (101)
T 2fc9_A 84 RLELQGPRGSP 94 (101)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEcCCCCCC
Confidence 99999877543
No 311
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=107.93 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=69.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCC---
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IING--- 88 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g--- 88 (367)
.+...+|||.||++ ++++++|+++|++||+|++|+|+++ +||||+|+++++|++||+.++ .|++
T Consensus 12 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 12 RRSENRVVVSGLPP----SGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CSCCCEEEEESCCS----SCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34578999999999 9999999999999999999999976 699999999999999999554 7888
Q ss_pred --eEEEEeeccCCCCCC
Q 017735 89 --KQVEIKRTIPKGAVG 103 (367)
Q Consensus 89 --~~i~v~~~~~~~~~~ 103 (367)
+.|.|+++.++....
T Consensus 81 ~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp CEEEEEEEESSCCSCCC
T ss_pred cceEEEEEeCCCCCCCC
Confidence 999999988765443
No 312
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.1e-13 Score=110.40 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCC-----CCHHHHHHhhccCCceeEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 108 KTKKIFVGGIPSS-----VNEDEFKDFFMQFGDVQEHQIMRDHS----TSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 108 ~~~~l~V~~lp~~-----~te~~L~~~f~~~G~v~~v~i~~~~~----~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
++++|+|.|+-.. -.++||+++|++||+|.+|.|++++. +.+++|++||+|+++++|++|++.||+..|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4678888887432 24689999999999999999999864 45678999999999999999999999999999
Q ss_pred eeeEeeecCC
Q 017735 179 AQVEVKKAEP 188 (367)
Q Consensus 179 ~~l~v~~a~~ 188 (367)
++|+|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 313
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.5e-14 Score=105.75 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=70.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEe
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 94 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~ 94 (367)
.++++|||.||+. ++++++|+++|++||+|++|+|+++ +++||||+|.+.++|++|+.....+.++.|.|.
T Consensus 3 ~~~~~l~V~nLp~----~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTG----DMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCS----SSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEE
Confidence 4678999999999 9999999999999999999999864 689999999999999988777667899999999
Q ss_pred eccCCCCC
Q 017735 95 RTIPKGAV 102 (367)
Q Consensus 95 ~~~~~~~~ 102 (367)
++.++...
T Consensus 74 ~a~~~~~~ 81 (88)
T 1wf0_A 74 NAEPKHNS 81 (88)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 88776543
No 314
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=4.1e-14 Score=111.04 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=71.5
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCC---ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGE---ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~ 89 (367)
..+..+|+|.||++ ++++++|+++|++|+. |.+|+|++++. ++++|||||+|.+.++|++||+ +.+.+.++
T Consensus 8 ~~~~~~l~V~nLp~----~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPW----SCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCS----SCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSS
T ss_pred CCCccEEEEeCCCC----CCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCe
Confidence 34677899999999 9999999999999988 89999999986 9999999999999999999998 44578899
Q ss_pred EEEEeeccC
Q 017735 90 QVEIKRTIP 98 (367)
Q Consensus 90 ~i~v~~~~~ 98 (367)
.|.|.++.+
T Consensus 83 ~i~V~~a~~ 91 (107)
T 2lmi_A 83 YVEVYEINN 91 (107)
T ss_dssp CCCCEECCH
T ss_pred EEEEEECCH
Confidence 998887654
No 315
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-14 Score=112.17 Aligned_cols=83 Identities=16% Similarity=0.307 Sum_probs=73.4
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
..+..+|||.||++ ++++++|+++|++|+.|.+ .++.++.++++++||||+|.+.++|++||+ +.+.|.++.|.
T Consensus 14 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 88 (101)
T 1fj7_A 14 STTPFNLFIGNLNP----NKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIK 88 (101)
T ss_dssp CSCSEEEEEECCCT----TSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEE
Confidence 34677999999999 9999999999999999988 777777788999999999999999999998 33488999999
Q ss_pred EeeccCCCC
Q 017735 93 IKRTIPKGA 101 (367)
Q Consensus 93 v~~~~~~~~ 101 (367)
|.++.++..
T Consensus 89 V~~a~~~~~ 97 (101)
T 1fj7_A 89 LEKPKGRDG 97 (101)
T ss_dssp EECCSCCCC
T ss_pred EEEcCCCCC
Confidence 999877644
No 316
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=107.52 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=70.2
Q ss_pred ccccceEeccCCCCCCchh--hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCe-
Q 017735 15 RQTTTQKMTGLSLTPVTEP--ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGK- 89 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~--t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~- 89 (367)
...++|||.||++....+. ++++|+++|++||+|++|.|+ +.+++++|||||+|.+.++|++|++.+ ..|.++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 3467899999998322211 889999999999999999988 357899999999999999999999954 488998
Q ss_pred EEEEeeccCCC
Q 017735 90 QVEIKRTIPKG 100 (367)
Q Consensus 90 ~i~v~~~~~~~ 100 (367)
.|.|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999886553
No 317
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.3e-13 Score=105.47 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=65.9
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
...++|||.||+. ++++++|+++|++||+|++|+|+ ++++||||+|.+.++|++|++. ...++++.|.
T Consensus 25 ~~~~~l~V~nlp~----~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 25 PRVTTAYIGNIPH----FATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp SSCCEEEEESCCT----TCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCEEEEcCCCc----ccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3467999999999 99999999999999999999998 3568999999999999999984 4588999999
Q ss_pred EeeccC
Q 017735 93 IKRTIP 98 (367)
Q Consensus 93 v~~~~~ 98 (367)
|+++.+
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 988765
No 318
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-13 Score=102.44 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=68.6
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|+ ++||||+|.+.++|++|++.+ ..++++.|
T Consensus 5 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 5 SSGMVKLFIGNLPR----EATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SSCCEEEEEESCCS----SCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCeEEEEeCCCC----CCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 45678999999999 99999999999999999999998 469999999999999999844 47999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 73 ~v~~a~~~~~~ 83 (90)
T 2dnq_A 73 NVEASKNKSKA 83 (90)
T ss_dssp EEECSSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99998877553
No 319
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=3.6e-14 Score=110.75 Aligned_cols=72 Identities=17% Similarity=0.370 Sum_probs=64.1
Q ss_pred EeCCCCCCCHHHHHHhh------------ccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 114 VGGIPSSVNEDEFKDFF------------MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 114 V~~lp~~~te~~L~~~f------------~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
+.+||+.+++++|+++| ++||+|++|.|+++. +++++|||||+|+++++|++|++.||+..|++++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777788887777666 999999999999886 47899999999999999999999999999999999
Q ss_pred Eeeec
Q 017735 182 EVKKA 186 (367)
Q Consensus 182 ~v~~a 186 (367)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 320
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=105.24 Aligned_cols=79 Identities=11% Similarity=0.210 Sum_probs=67.7
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc----ccCCeE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH----IINGKQ 90 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~----~i~g~~ 90 (367)
.+.++|||.||++. ++++++|+++|++||+|++|+|++++ +||||+|+++++|++|++.++ .|.++.
T Consensus 13 ~p~~~l~V~nLp~~---~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 13 ETRRVVHIMDFQRG---KNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCEEEEESCCCS---SSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCEEEEeCCCCC---cCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 46789999999962 58999999999999999999998753 699999999999999999443 489999
Q ss_pred EEEeeccCCCCC
Q 017735 91 VEIKRTIPKGAV 102 (367)
Q Consensus 91 i~v~~~~~~~~~ 102 (367)
|.|.++..+...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 1x4d_A 84 VRVHLSQKYKRI 95 (102)
T ss_dssp CEEEEECCCTTS
T ss_pred EEEEECCCCCCC
Confidence 999999865443
No 321
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3e-13 Score=104.01 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=67.8
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccC--CeE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIIN--GKQ 90 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~--g~~ 90 (367)
.++++|||.||+. ++++++|+++|++||+|++|.|+++ ++||||+|.+.++|++|++. .+.|. ++.
T Consensus 15 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 15 NPTTRLWVGGLGP----NTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCSCEEEECCCS----SCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 4568999999999 9999999999999999999999864 67999999999999999994 45788 899
Q ss_pred EEEeeccCCC
Q 017735 91 VEIKRTIPKG 100 (367)
Q Consensus 91 i~v~~~~~~~ 100 (367)
|.|+++.++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999988764
No 322
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=2.9e-13 Score=114.73 Aligned_cols=77 Identities=22% Similarity=0.529 Sum_probs=68.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccC----C-------ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~----G-------~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
+.++|||+|||.++++++|+++|++| + .|.++.+.. +++||||+|.++++|++|+ .||+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 677776654 3789999999999999999 8999999
Q ss_pred CCeeeEeeecCCCCC
Q 017735 177 AGAQVEVKKAEPKKP 191 (367)
Q Consensus 177 ~g~~l~v~~a~~~~~ 191 (367)
.+++|+|.++....+
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTEECEEECCSSCCC
T ss_pred cCceeeecCCcccCC
Confidence 999999999876543
No 323
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2e-13 Score=108.59 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=66.2
Q ss_pred cceEeccC----CCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCC----HHH----HHHHHh----
Q 017735 18 TTQKMTGL----SLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD----PSV----VDKVIE---- 81 (367)
Q Consensus 18 ~~~~v~~L----~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~----~~~----a~~al~---- 81 (367)
..|+|.+| ++ .+++++|+++|++||+|.+|.++.|+.|++|+||+||+|.+ +++ |.+|++
T Consensus 3 ~kI~VgnL~~~~~~----~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTT----NIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCC----CCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCC----CCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 67999999 77 99999999999999999999999999999999999999996 333 777877
Q ss_pred hccccCCeEEEEeecc
Q 017735 82 DTHIINGKQVEIKRTI 97 (367)
Q Consensus 82 ~~~~i~g~~i~v~~~~ 97 (367)
+...|+++.|+|....
T Consensus 79 ng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNK 94 (136)
T ss_dssp TCEEETTEEEEEEECC
T ss_pred cCCeecCcEEEEEECc
Confidence 4458999999998653
No 324
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=102.40 Aligned_cols=75 Identities=16% Similarity=0.335 Sum_probs=61.6
Q ss_pred ccceEeccCCCCCCchh--hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCe-EE
Q 017735 17 TTTQKMTGLSLTPVTEP--ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGK-QV 91 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~--t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~-~i 91 (367)
.++|+|.|||....... ++++|+++|++||+|++|.|+ +.++++++||||+|.++++|++|++.+ ..+.++ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 36899999998322111 889999999999999999987 357899999999999999999999954 477777 66
Q ss_pred EE
Q 017735 92 EI 93 (367)
Q Consensus 92 ~v 93 (367)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=2e-13 Score=117.06 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=73.3
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
+.++|||.||++ ++++++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++||+ +...|+++.|.|
T Consensus 87 ~~~~l~V~nLp~----~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 87 TGAKLLVSNLDF----GVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp TCEEEEEECCCS----CCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 457999999999 99999999999999999999999998 89999999999999999999999 445899999999
Q ss_pred eeccCCC
Q 017735 94 KRTIPKG 100 (367)
Q Consensus 94 ~~~~~~~ 100 (367)
+++.+..
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9987653
No 326
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.6e-13 Score=103.93 Aligned_cols=78 Identities=22% Similarity=0.369 Sum_probs=69.0
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|+++ ++||||+|.+.++|++|++. .+.|+++.|
T Consensus 12 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 12 FTQRSRLFVGNLPP----DITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCTTEEEEESCCT----TCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 34667999999999 9999999999999999999999854 57999999999999999984 457999999
Q ss_pred EEeeccCCCC
Q 017735 92 EIKRTIPKGA 101 (367)
Q Consensus 92 ~v~~~~~~~~ 101 (367)
.|+++.++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpj_A 82 RVRFACHSAS 91 (99)
T ss_dssp EEEESSCCSC
T ss_pred EEEEcCCCCC
Confidence 9999877644
No 327
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.4e-14 Score=110.88 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=70.3
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v 93 (367)
+.++|||.||+. ++++++|+++|++||.|.+|.+..+..++++++||||+|.+.++|++||+. .+.|.++.|.|
T Consensus 24 ~~~~l~V~nLp~----~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 24 PNKVLYLKNLSP----RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSEEEEECCCT----TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCEEEEeCCCC----CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 457999999999 999999999999999995544433333788999999999999999999984 45889999999
Q ss_pred eeccCCCCC
Q 017735 94 KRTIPKGAV 102 (367)
Q Consensus 94 ~~~~~~~~~ 102 (367)
+++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999877544
No 328
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=115.90 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=76.6
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccE--------EEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--c
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITD--------SVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--T 83 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~ 83 (367)
..+.++|||.||+. ++++++|+++|++||.|.+ |+|+.++.++++++||||+|.+.++|++|++. .
T Consensus 4 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 4 NSDNNTIFVQGLGE----NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 45678999999999 9999999999999999999 99999988899999999999999999999984 4
Q ss_pred cccCCeEEEEeeccCCCCC
Q 017735 84 HIINGKQVEIKRTIPKGAV 102 (367)
Q Consensus 84 ~~i~g~~i~v~~~~~~~~~ 102 (367)
..|.++.|.|+++.++...
T Consensus 80 ~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRADF 98 (116)
Confidence 5889999999998776543
No 329
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.1e-13 Score=101.31 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=67.9
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCeEEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVE 92 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~~i~ 92 (367)
.+..++|||.||++ ++++++|+++|++||+|.+| +.++.+++ ||||+|.++++|++||+ +.+.|+++.|.
T Consensus 5 ~~~~~~l~V~nl~~----~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~ 75 (94)
T 2e5g_A 5 SSGLRSVFVSGFPR----GVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLR 75 (94)
T ss_dssp CTTCCEEEEECCCT----TCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECC
T ss_pred cCCCCEEEEECCCC----CCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEE
Confidence 34567999999999 99999999999999999987 55665555 99999999999999999 33589999999
Q ss_pred EeeccCCCCC
Q 017735 93 IKRTIPKGAV 102 (367)
Q Consensus 93 v~~~~~~~~~ 102 (367)
|+++.++...
T Consensus 76 V~~a~~~~~~ 85 (94)
T 2e5g_A 76 VRPREQKEFQ 85 (94)
T ss_dssp CBCSCCSCCC
T ss_pred EEECCcCCCC
Confidence 9987665443
No 330
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=100.01 Aligned_cols=77 Identities=18% Similarity=0.334 Sum_probs=68.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|+++ ||||+|.+.++|++|++ +.+.|.++.|
T Consensus 7 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 7 GKASTKLHVGNISP----TCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCSSEEEEEESCCS----SCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 45678999999999 9999999999999999999999843 99999999999999998 4458999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
.|+++.++...
T Consensus 75 ~V~~a~~~~~~ 85 (92)
T 2dgt_A 75 HVQLSTSRLRT 85 (92)
T ss_dssp EEEESSCCCSC
T ss_pred EEEEccCCCCC
Confidence 99999877553
No 331
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.41 E-value=2.3e-13 Score=132.69 Aligned_cols=80 Identities=18% Similarity=0.407 Sum_probs=74.1
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEEe
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIK 94 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 94 (367)
..+|||.||++ ++|+++|+++|++||+|+.|.|+.++.|+++++||||+|.++++|++||+. .+.|.++.|.|.
T Consensus 102 ~~~lfV~nL~~----~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 102 FKTLFVARVNY----DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCEEEEeCCCC----CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 36999999999 999999999999999999999999998999999999999999999999984 458999999999
Q ss_pred eccCCC
Q 017735 95 RTIPKG 100 (367)
Q Consensus 95 ~~~~~~ 100 (367)
++.+..
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 987654
No 332
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.41 E-value=6.6e-13 Score=103.28 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=68.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+.++|||.||+. ++++++|+++|++||+|++|+|++ +||||+|.++++|++||+. .+.|+++.|.
T Consensus 9 ~~~~~l~V~nl~~----~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 9 AKVKVLFVRNLAN----TVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCEEEECCCT----TCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 4568999999999 999999999999999999999873 4999999999999999994 4589999999
Q ss_pred EeeccCCCCCC
Q 017735 93 IKRTIPKGAVG 103 (367)
Q Consensus 93 v~~~~~~~~~~ 103 (367)
|+++.++....
T Consensus 77 v~~a~~~~~~~ 87 (103)
T 2dgu_A 77 IVFAKPPDQKR 87 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEcCCCcccc
Confidence 99998775543
No 333
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.41 E-value=2.8e-13 Score=106.80 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=66.7
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
...+|+|.||++ ++++++|+++|++|| +|..|.|+.+ +++|||||+|++.++|++||+.+ .+|+++.|.
T Consensus 27 ~~~~l~VgnLp~----~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 27 KRYRITMKNLPE----GCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp CCEEEEEECSSC----CCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEECCCC----CCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 456899999999 999999999999999 8999988643 47899999999999999999844 589999999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|+++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9988654
No 334
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=8.9e-13 Score=114.33 Aligned_cols=78 Identities=22% Similarity=0.503 Sum_probs=67.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccC----C-------ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~----G-------~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
..++|||+|||+++++++|+++|++| + .|.++.+. ++++||||+|.++++|++|| +||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 55555553 45889999999999999999 8999999
Q ss_pred CCeeeEeeecCCCCCC
Q 017735 177 AGAQVEVKKAEPKKPN 192 (367)
Q Consensus 177 ~g~~l~v~~a~~~~~~ 192 (367)
.+++|+|.++....+.
T Consensus 76 ~g~~i~v~~~~~~~~~ 91 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPL 91 (198)
T ss_dssp TTEEEEEECCCCCCCC
T ss_pred cCceEEEeCCCCCCCC
Confidence 9999999998776443
No 335
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-13 Score=102.59 Aligned_cols=77 Identities=9% Similarity=0.199 Sum_probs=67.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
...++|||.||++ ++++++|+++|++||.|. +.++.+ ++++||||+|.+.++|++|++. ...|.++.|.
T Consensus 17 ~~~~~l~V~nL~~----~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 17 PLAADVYVGNLPR----DARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CCCCEEEEECCCT----TCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCEEEEeCCCC----cCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4468999999999 999999999999999997 666654 5789999999999999999984 4589999999
Q ss_pred EeeccCCC
Q 017735 93 IKRTIPKG 100 (367)
Q Consensus 93 v~~~~~~~ 100 (367)
|+++.++.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99987764
No 336
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=9.3e-13 Score=103.47 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=67.6
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~ 90 (367)
...+.++|||.||+. ++++++|+++|++||+|++|.|+ ++||||+|.+.++|++|++ +...++++.
T Consensus 27 ~~~~~~~l~V~nLp~----~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 27 GELSNTRLFVRPFPL----DVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -CCSCSEEEECSSCT----TCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCC----CCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345678999999999 99999999999999999999998 5799999999999999998 445889999
Q ss_pred EEEeeccCCC
Q 017735 91 VEIKRTIPKG 100 (367)
Q Consensus 91 i~v~~~~~~~ 100 (367)
|.|.++.++.
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999987654
No 337
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.8e-13 Score=98.91 Aligned_cols=74 Identities=22% Similarity=0.408 Sum_probs=66.0
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc---cccCCe
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT---HIINGK 89 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~---~~i~g~ 89 (367)
...+.++|+|.||+. ++++++|+++|++||+|.+|+++++ ++||||+|.+.++|++|++.+ ..++++
T Consensus 8 ~~~~~~~l~V~~l~~----~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 8 EDKTITTLYVGGLGD----TITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp SCSSCCCEEEECCTT----TSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCccEEEEcCCCC----CCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 345678999999999 9999999999999999999999964 679999999999999999854 488999
Q ss_pred EEEEeec
Q 017735 90 QVEIKRT 96 (367)
Q Consensus 90 ~i~v~~~ 96 (367)
.|.|+++
T Consensus 78 ~l~v~~a 84 (85)
T 2ytc_A 78 RLNVKWG 84 (85)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9998876
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=1.7e-12 Score=101.30 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=71.2
Q ss_pred ccccccceEeccCCCC-CCchhhHHHHHHhhccCCCccEEEEeeCCCC-CCcceEEEEEeCCHHHHHHHHhhc--cccCC
Q 017735 13 INRQTTTQKMTGLSLT-PVTEPALAQFIKHFGKYGEITDSVIMKDRKT-GQPRGFGFVTYADPSVVDKVIEDT--HIING 88 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~-~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~t-g~srG~afV~f~~~~~a~~al~~~--~~i~g 88 (367)
...++++|+|.||... ...+.++++|+++|++||+|++|+|++++.+ ++++||+||+|.++++|++|++.+ ..+++
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3467889999999742 2335578999999999999999999998754 689999999999999999999944 58999
Q ss_pred eEEEEeeccC
Q 017735 89 KQVEIKRTIP 98 (367)
Q Consensus 89 ~~i~v~~~~~ 98 (367)
+.|.|.++.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999988754
No 339
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.8e-13 Score=99.63 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=67.9
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
..+.++|||.||+. ++++++|+++|++||+|++|+|+++ ||||+|.+.++|++|++ +...++++.|
T Consensus 6 ~~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 6 SGNTWKIFVGNVSA----ACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SCCSCCEEEESCCT----TCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999 9999999999999999999999843 99999999999999998 4458999999
Q ss_pred EEeeccCCCC
Q 017735 92 EIKRTIPKGA 101 (367)
Q Consensus 92 ~v~~~~~~~~ 101 (367)
.|+++.+...
T Consensus 74 ~v~~a~~~~~ 83 (90)
T 2dnp_A 74 NVELSTKGQK 83 (90)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999887644
No 340
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=5.1e-13 Score=102.42 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=69.0
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~ 90 (367)
...+.++|||.||+. ++++++|+++|++|++|..+ ..++++++||||+|.+.++|++|++.+ ..|.++.
T Consensus 12 ~~~~~~~l~V~nL~~----~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 12 KVRAARTLLAKNLSF----NITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTTGGGEEEEESCCS----SCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cCCCCCEEEEeCCCC----CCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345678999999999 99999999999999988766 336789999999999999999999944 4899999
Q ss_pred EEEeeccCCCC
Q 017735 91 VEIKRTIPKGA 101 (367)
Q Consensus 91 i~v~~~~~~~~ 101 (367)
|.|.++.++..
T Consensus 83 l~v~~a~~~~~ 93 (96)
T 1fjc_A 83 VSLYYTGEKGG 93 (96)
T ss_dssp EEEEECSSSCC
T ss_pred EEEEEcCCCCC
Confidence 99999876643
No 341
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=6.7e-13 Score=107.26 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=66.6
Q ss_pred ccccceEeccCCCCCCchhhHHHH----HHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCC
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQF----IKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIING 88 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l----~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g 88 (367)
.+..+|||.||++ ++++++| .++|++||+|++|.+.+ ++++||||||+|.+.++|++|++.+ ..|.+
T Consensus 27 ~p~~~LfV~nL~~----~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 27 EPSQVVLITNINP----EVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp SCCSEEEEESCCT----TSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3457899999999 6666665 47999999999988864 5778999999999999999999844 58899
Q ss_pred eEEEEeeccCCC
Q 017735 89 KQVEIKRTIPKG 100 (367)
Q Consensus 89 ~~i~v~~~~~~~ 100 (367)
+.|.|.++.++.
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999987653
No 342
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.38 E-value=3.6e-13 Score=103.40 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=70.4
Q ss_pred ccccccceEeccCCCCCCchhhHHHHH----HhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hcccc
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFI----KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHII 86 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i 86 (367)
...+.++|+|.||+. ++++++|+ ++|++||+|.+|.|++ ++++++||||+|.+.++|++|++ +...+
T Consensus 4 ~~~~~~~l~V~nLp~----~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 4 ETRPNHTIYINNLNE----KIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp --CCCSEEEEESCCT----TSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCC----CCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 345778999999999 89999999 9999999999999874 56788999999999999999998 44588
Q ss_pred CCeEEEEeeccCCC
Q 017735 87 NGKQVEIKRTIPKG 100 (367)
Q Consensus 87 ~g~~i~v~~~~~~~ 100 (367)
.++.|.|.++.++.
T Consensus 77 ~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 77 YDKPMRIQYAKTDS 90 (97)
T ss_dssp TTEECEEEECSSCC
T ss_pred CCcEEEEEEccCCC
Confidence 99999999987764
No 343
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.7e-13 Score=100.50 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=66.8
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCC-ccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc---cccCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGE-ITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT---HIINGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~-i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~---~~i~g~ 89 (367)
..+.++|||.||+. ++++++|+++|++||+ |..+.++ +++||||+|.+.++|++|++.+ ..++++
T Consensus 5 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 5 SSGMNKLYIGNLSP----AVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCCEEEECCCT----TCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCC----CCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 34678999999999 9999999999999999 6666653 4679999999999999999843 579999
Q ss_pred EEEEeeccCCCCC
Q 017735 90 QVEIKRTIPKGAV 102 (367)
Q Consensus 90 ~i~v~~~~~~~~~ 102 (367)
.|.|+++.++...
T Consensus 74 ~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 74 IMEVDYSVSKKLR 86 (93)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCcccc
Confidence 9999999876543
No 344
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.9e-13 Score=104.24 Aligned_cols=78 Identities=10% Similarity=0.129 Sum_probs=61.8
Q ss_pred hccccccceEe--ccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--cc-
Q 017735 12 FINRQTTTQKM--TGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--II- 86 (367)
Q Consensus 12 ~~~~~~~~~~v--~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i- 86 (367)
....++++||| .+|++ ++++++|+++|++||+|++|.|+. .|+||||+|+++++|++|++.++ +|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~----~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGN----GVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp CCSSCCSEEEEETCTGGG----TCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCCEEEEECCCCCC----CCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 34456778999 66999 999999999999999999988764 36899999999999999999644 33
Q ss_pred ----CCeEEEEeeccCC
Q 017735 87 ----NGKQVEIKRTIPK 99 (367)
Q Consensus 87 ----~g~~i~v~~~~~~ 99 (367)
.++.|.|..+...
T Consensus 90 ~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 90 DDLGQKITLYLNFVEKV 106 (114)
T ss_dssp CTTSCEEECEEEEESCC
T ss_pred cccCCCcEEEEEecccC
Confidence 4555666555433
No 345
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.37 E-value=1.5e-12 Score=102.55 Aligned_cols=73 Identities=15% Similarity=0.350 Sum_probs=65.2
Q ss_pred ccceEeccCCCCCCch-hhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEEE
Q 017735 17 TTTQKMTGLSLTPVTE-PALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEI 93 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~v 93 (367)
.++|||.||++ + +++++|+++|++||+|++|+| +++||||+|.+.++|++|++ +...|+++.|.|
T Consensus 27 ~~~l~V~nl~~----~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 27 NSRVFIGNLNT----ALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp SSEEEECSCCC----SSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CcEEEEeCCCc----ccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 47999999999 8 999999999999999999998 56899999999999999997 445899999999
Q ss_pred eeccCCCC
Q 017735 94 KRTIPKGA 101 (367)
Q Consensus 94 ~~~~~~~~ 101 (367)
+++.+...
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99875433
No 346
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.1e-12 Score=103.53 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=67.1
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
.+..++|+|.||++ ++++++|+++|++||.|++|.|++ +++||||+|.+.++|++|++.+ ..|.++.|
T Consensus 7 ~~~~~~l~V~nLp~----~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 7 GRSKTVILAKNLPA----GTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp SEEEEEEEEESCCT----TCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 44578999999999 999999999999999999998874 5679999999999999999844 57899999
Q ss_pred EEeeccCC
Q 017735 92 EIKRTIPK 99 (367)
Q Consensus 92 ~v~~~~~~ 99 (367)
.|.++...
T Consensus 77 ~V~~a~~~ 84 (111)
T 1whx_A 77 YLEWAPIG 84 (111)
T ss_dssp EEEEEETT
T ss_pred EEEECCCC
Confidence 99988654
No 347
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.36 E-value=2.3e-12 Score=97.17 Aligned_cols=74 Identities=11% Similarity=0.153 Sum_probs=66.2
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
+..++|+|.||++ ++++++|+++|++| +|++|+|. ++++||||+|.++++|++|++.+ ..+.++.|.
T Consensus 3 ~~~~~l~V~nLp~----~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 3 SGSSGILVKNLPQ----DSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCCEEEESCCS----SCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 4578999999999 99999999999999 99999984 57899999999999999999944 489999999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|+++...
T Consensus 72 V~~a~~~ 78 (88)
T 1wg1_A 72 VQLQPTD 78 (88)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9987554
No 348
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.1e-12 Score=98.63 Aligned_cols=76 Identities=14% Similarity=0.304 Sum_probs=66.7
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccC--CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCe
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKY--GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGK 89 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~--G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~ 89 (367)
..+.++|||.||+. ++++++|+++|++| +.|.+|+++ ++||||+|.+.++|++|++.+ ..|.++
T Consensus 12 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 12 MSSVKILYVRNLML----STSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SSCCCEEEEESCCT----TCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cCCcCEEEEeCCCC----CCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34678999999999 99999999999999 889988765 469999999999999999944 589999
Q ss_pred EEEEeeccCCCC
Q 017735 90 QVEIKRTIPKGA 101 (367)
Q Consensus 90 ~i~v~~~~~~~~ 101 (367)
.|.|+++.++..
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999887654
No 349
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=100.24 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=68.4
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEE-EEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDS-VIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQV 91 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~-~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i 91 (367)
....+|||.||++ ++++++|+++|++||+|++| .|+.++.+++ |||+|.+.++|++|++ +...|.++.|
T Consensus 13 ~~~~~l~V~nlp~----~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 13 QRIRKLQIRNIPP----HLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CSCCCEEEEEECS----SSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEEcCCC----CCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3468999999999 99999999999999999999 5888765433 9999999999999998 4458999999
Q ss_pred EEeeccCCC
Q 017735 92 EIKRTIPKG 100 (367)
Q Consensus 92 ~v~~~~~~~ 100 (367)
.|+++.+++
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998774
No 350
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.35 E-value=1e-12 Score=104.35 Aligned_cols=74 Identities=15% Similarity=0.319 Sum_probs=61.6
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeE--
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQ-- 90 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~-- 90 (367)
+...+|||.||++ ++++++|+++|++||+|++|.|+.+ +||||+|+++++|++||+.+ .+|+++.
T Consensus 14 r~~~~l~V~nLp~----~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPP----SGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCS----SCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCC----CCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4568999999999 9999999999999999999999876 79999999999999999954 4788887
Q ss_pred ---EEEeeccCC
Q 017735 91 ---VEIKRTIPK 99 (367)
Q Consensus 91 ---i~v~~~~~~ 99 (367)
|+|+...+.
T Consensus 83 ~~~i~v~~~~~~ 94 (115)
T 3beg_B 83 TAYIRVKVDGPR 94 (115)
T ss_dssp CCBCEEEECC--
T ss_pred eEEEEeccCCCC
Confidence 666665544
No 351
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=2.2e-12 Score=121.09 Aligned_cols=78 Identities=14% Similarity=0.261 Sum_probs=66.8
Q ss_pred CCCCCcceEEEeC--CCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccC---C
Q 017735 104 SKDFKTKKIFVGG--IPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---G 178 (367)
Q Consensus 104 ~~~~~~~~l~V~~--lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~---g 178 (367)
....++++|||+| |+..+||++|+++|++||+|++|.|.+ +|+||||+|++.++|++||+.||+.++. +
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456789999999 578999999999999999999987753 4789999999999999999999999883 3
Q ss_pred e--eeEeeecC
Q 017735 179 A--QVEVKKAE 187 (367)
Q Consensus 179 ~--~l~v~~a~ 187 (367)
+ +|.|.+++
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 57777764
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=4.6e-13 Score=110.58 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=69.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEE--E---eeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccC
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSV--I---MKDRKTGQPRGFGFVTYADPSVVDKVIED--THIIN 87 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~--i---~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~ 87 (367)
.+.++|||.||++ ++++++|+++|++||.|..|. + ++...++++++||||+|.+.++|++||+. ...|.
T Consensus 43 ~~~~~l~V~nLp~----~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAK----HVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECT----TCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3567899999999 999999999999999998751 1 11123688999999999999999999994 45899
Q ss_pred CeEEEEeeccCCCC
Q 017735 88 GKQVEIKRTIPKGA 101 (367)
Q Consensus 88 g~~i~v~~~~~~~~ 101 (367)
++.|.|.++.+...
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999876543
No 353
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.34 E-value=3.2e-12 Score=98.33 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=65.3
Q ss_pred hhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccC
Q 017735 10 TMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIIN 87 (367)
Q Consensus 10 ~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~ 87 (367)
......+.++|||.||++. ++++++|+++|++||+|.+|+|. ++||||+|.+.++|++|++.+ ..+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~---~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLK---NVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp ----CCTTCEEEEESCCSS---CCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ccCCCCCCCEEEEeCCCcc---cCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3444557889999999941 68999999999999999999983 679999999999999999944 4788
Q ss_pred CeEEEEeeccCC
Q 017735 88 GKQVEIKRTIPK 99 (367)
Q Consensus 88 g~~i~v~~~~~~ 99 (367)
++.|.|+++.++
T Consensus 84 g~~l~V~~a~~~ 95 (97)
T 2xnq_A 84 GKKLILEVSSSN 95 (97)
T ss_dssp TEECEEEECCCC
T ss_pred CEEEEEEecCCC
Confidence 999999988654
No 354
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.3e-12 Score=96.53 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=65.6
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i~ 92 (367)
.+.++|||.|| ++++++|+++|++||+|++|.|. ++++||||+|.+.++|++||+.+ ..|.++.|.
T Consensus 13 ~~~~~l~V~n~------~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 13 RKGNTLYVYGE------DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCSEEEEECS------SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCEEEEcCC------CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 45679999994 67999999999999999999985 46789999999999999999844 488999999
Q ss_pred EeeccCCCCC
Q 017735 93 IKRTIPKGAV 102 (367)
Q Consensus 93 v~~~~~~~~~ 102 (367)
|.++.++...
T Consensus 81 v~~a~~~~~~ 90 (97)
T 1x5p_A 81 VNIARKQPML 90 (97)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCCCC
Confidence 9998776543
No 355
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.8e-12 Score=98.38 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=65.8
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeE
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQ 90 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~ 90 (367)
...+.++|||.||++. ++++++|+++|++||+|++|+|. ++||||+|.+.++|++|++. ...+.++.
T Consensus 6 ~~~~~~~l~V~nlp~~---~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLK---NVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp ---CCEEEEEESSTTS---CCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred cCCCCCEEEEeCCCcc---cCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3457889999999942 68999999999999999999984 57999999999999999994 45788999
Q ss_pred EEEeeccCCCCC
Q 017735 91 VEIKRTIPKGAV 102 (367)
Q Consensus 91 i~v~~~~~~~~~ 102 (367)
|.|+++.++...
T Consensus 75 l~V~~a~~~~~~ 86 (96)
T 2kvi_A 75 LILEVSSSNARP 86 (96)
T ss_dssp BCEEEEECCCC-
T ss_pred EEEEEcCcCCCC
Confidence 999998766443
No 356
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.32 E-value=1.9e-12 Score=107.84 Aligned_cols=76 Identities=18% Similarity=0.395 Sum_probs=68.5
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~ 92 (367)
.+.++|||.||++ ++++++|+++|++||+|++|+|+++ +++||||+|.+.++|++|++. ...|.++.|.
T Consensus 71 ~~~~~l~V~nl~~----~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 71 PLDCKVYVGNLGN----NGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp TTSCEEEEESCCS----CCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred CCCCEEEEeCCCC----CCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3567999999999 9999999999999999999999876 578999999999999999984 4588999999
Q ss_pred EeeccCC
Q 017735 93 IKRTIPK 99 (367)
Q Consensus 93 v~~~~~~ 99 (367)
|.++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998765
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=2.8e-12 Score=96.27 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=63.1
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccC----C-------CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKY----G-------EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE- 81 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~- 81 (367)
.++.++|||.||++ ++++++|+++|++| + +|.+|+++++ ++||||+|.++++|++|+.
T Consensus 3 ~~~~~~l~V~nLp~----~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l 72 (87)
T 2hzc_A 3 LGSARRLYVGNIPF----GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAF 72 (87)
T ss_dssp SGGGGEEEEESCCT----TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGG
T ss_pred CCCCCEEEEeCCCC----CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhc
Confidence 45788999999999 99999999999999 8 8999998864 6799999999999999994
Q ss_pred hccccCCeEEEEee
Q 017735 82 DTHIINGKQVEIKR 95 (367)
Q Consensus 82 ~~~~i~g~~i~v~~ 95 (367)
+...++++.|.|++
T Consensus 73 ~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 73 DGIIFQGQSLKIRR 86 (87)
T ss_dssp TTCEETTEECEEEC
T ss_pred CCCEECCeEEEEeC
Confidence 33478999998874
No 358
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=6.7e-12 Score=99.27 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=65.6
Q ss_pred CCcceEEEeCCCCCC----------CHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 107 FKTKKIFVGGIPSSV----------NEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~----------te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
.+++.|.|.|+=... .++||+++|++||.|++|.|+++. ++|++||+|++.++|++|++.||+..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356677777765432 236789999999999999997653 589999999999999999999999999
Q ss_pred CCeeeEeeecCC
Q 017735 177 AGAQVEVKKAEP 188 (367)
Q Consensus 177 ~g~~l~v~~a~~ 188 (367)
++++|+|+++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998764
No 359
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.32 E-value=4.5e-12 Score=106.13 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=66.1
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCC--eEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIING--KQV 91 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g--~~i 91 (367)
...+|+|.||++ ++++++|+++|++||+|++|+|+.+ ++++||||+|++.++|++|++.+ ..|.+ +.|
T Consensus 45 ~vl~l~VgNL~~----~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 45 PVLRIIVENLFY----PVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CEEEEEECSCCS----CCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred ceEEEEEeCcCC----CCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 345688999999 9999999999999999999999753 36789999999999999999955 46754 899
Q ss_pred EEeeccCCC
Q 017735 92 EIKRTIPKG 100 (367)
Q Consensus 92 ~v~~~~~~~ 100 (367)
+|+++.++.
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999988764
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=4.2e-12 Score=110.27 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=71.1
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh-ccccCCeEEEEe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIK 94 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~-~~~i~g~~i~v~ 94 (367)
+.++|||.||++ ++++++|+++|++||+|.+|+|+++. +++++|||||+|+++++|++|++. .+.++++.|.|+
T Consensus 108 ~~~~l~V~nLp~----~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPT----DATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCT----TCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred ccCEEEecCCCC----cCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 357899999999 99999999999999999999999987 589999999999999999999983 358999999998
Q ss_pred eccCC
Q 017735 95 RTIPK 99 (367)
Q Consensus 95 ~~~~~ 99 (367)
+....
T Consensus 183 ~~~~y 187 (193)
T 2voo_A 183 FKDDY 187 (193)
T ss_dssp ETTTC
T ss_pred EhHHH
Confidence 76544
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=1.1e-11 Score=98.60 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=69.8
Q ss_pred cccccceEeccCCCC-CCchhhHHHHHHhhccCCCccEEEEeeCCC----CCCcceEEEEEeCCHHHHHHHHhhc--ccc
Q 017735 14 NRQTTTQKMTGLSLT-PVTEPALAQFIKHFGKYGEITDSVIMKDRK----TGQPRGFGFVTYADPSVVDKVIEDT--HII 86 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~-~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~----tg~srG~afV~f~~~~~a~~al~~~--~~i 86 (367)
..++++|.+.|+... ...+..+++|+++|++||+|++|+|++++. +.+++|++||+|.++++|++|++.+ ..+
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 347889999999642 122446789999999999999999999864 3578899999999999999999954 589
Q ss_pred CCeEEEEeecc
Q 017735 87 NGKQVEIKRTI 97 (367)
Q Consensus 87 ~g~~i~v~~~~ 97 (367)
+++.|.+....
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999998764
No 362
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.27 E-value=1.5e-11 Score=99.10 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=64.7
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceE-EEEEeCCHHHHHHHHhhc--cccCC--eE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGF-GFVTYADPSVVDKVIEDT--HIING--KQ 90 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~-afV~f~~~~~a~~al~~~--~~i~g--~~ 90 (367)
....|+|.||++ .+++++|+++|++||+|++|+|+.+ +++| |||+|.+.++|++|++.+ ..|.+ +.
T Consensus 27 ~VL~I~V~NL~~----~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 27 PVLRIIVENLFY----PVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp SEEEEEEESCCS----CCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred ceEEEEECCCCC----CCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 345677999999 9999999999999999999998864 3578 999999999999999955 46777 88
Q ss_pred EEEeeccCCC
Q 017735 91 VEIKRTIPKG 100 (367)
Q Consensus 91 i~v~~~~~~~ 100 (367)
|+|.++.++.
T Consensus 98 LrI~~ak~~~ 107 (130)
T 3zzy_A 98 LRIDFSKLTS 107 (130)
T ss_dssp EEEEECSCSS
T ss_pred EEEEecCCCc
Confidence 8898887664
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3e-11 Score=95.37 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=68.7
Q ss_pred ccccccceEeccCCCCCCc-------hhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--
Q 017735 13 INRQTTTQKMTGLSLTPVT-------EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-- 83 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~-------~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~-- 83 (367)
...++++|+|.||...... +.++++|+++|++||+|++|.| .++ .++|||||+|.++++|++|++.+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 3456789999999652210 1247899999999999999966 444 38999999999999999999854
Q ss_pred cccCCeEEEEeeccCCCCCC
Q 017735 84 HIINGKQVEIKRTIPKGAVG 103 (367)
Q Consensus 84 ~~i~g~~i~v~~~~~~~~~~ 103 (367)
..|+++.|.|.++.++....
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CEETTEECEEEECCSCCCSS
T ss_pred CEECCcEEEEEEeCCCCCcc
Confidence 48899999999988765443
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.26 E-value=1.4e-11 Score=98.67 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=65.3
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCCeEEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVE 92 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g~~i~ 92 (367)
.+.++|||.|| ++++++|+++|++||+|++|.|+ ++++||||+|.+.++|++|++ +...|.++.|.
T Consensus 37 ~~~~~lfVgnl------~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 37 RKGNTLYVYGE------DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCEEEEECS------SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCEEEEcCC------CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45678999994 57999999999999999999996 467899999999999999998 44589999999
Q ss_pred EeeccCCCC
Q 017735 93 IKRTIPKGA 101 (367)
Q Consensus 93 v~~~~~~~~ 101 (367)
|.++.++..
T Consensus 105 V~~a~~~~~ 113 (121)
T 2bz2_A 105 VNIARKQPM 113 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeCCCCC
Confidence 999877644
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-11 Score=94.67 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=59.2
Q ss_pred chhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCC
Q 017735 31 TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGA 101 (367)
Q Consensus 31 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~ 101 (367)
.++++++|+++|++||+|++|.|+ ++++|||||+|++.++|++||+.++.+.++.|.|+++.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCC
Confidence 368999999999999999999998 367899999999999999999988888999999999876643
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.4e-11 Score=90.53 Aligned_cols=77 Identities=9% Similarity=0.120 Sum_probs=60.3
Q ss_pred cccc-eEeccCCCCCCchhhHHHHHHhhccC-CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--cccCCeEE
Q 017735 16 QTTT-QKMTGLSLTPVTEPALAQFIKHFGKY-GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQV 91 (367)
Q Consensus 16 ~~~~-~~v~~L~~~~~~~~t~~~l~~~F~~~-G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~i 91 (367)
++.| ++|.||++....+...++|+++|++| |+|.+| |+ |+|||+|.+.++|++|++++ .+|.+++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 88999999333333333477899999 499988 22 89999999999999999954 58999999
Q ss_pred EEeeccCCCCC
Q 017735 92 EIKRTIPKGAV 102 (367)
Q Consensus 92 ~v~~~~~~~~~ 102 (367)
+|..+..+.+.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99998877554
No 367
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.4e-11 Score=94.37 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=70.5
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHHhcC--CcccCCee
Q 017735 105 KDFKTKKIFVGGIPSS-VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAKGN--KLELAGAQ 180 (367)
Q Consensus 105 ~~~~~~~l~V~~lp~~-~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~-~~~a~~Al~~l~--g~~~~g~~ 180 (367)
...+...|||.||++. +++++|+++|++|++|..|+|+.+.. .|||+|.+ +++|++|+++|| +.+|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4557789999999999 99999999999999999999998864 59999999 899999999984 78899999
Q ss_pred eEeeecCCCC
Q 017735 181 VEVKKAEPKK 190 (367)
Q Consensus 181 l~v~~a~~~~ 190 (367)
++++..+..+
T Consensus 88 ~~~evL~Gee 97 (121)
T 1owx_A 88 VTWEVLEGEV 97 (121)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECCCHH
Confidence 9987766443
No 368
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=8.1e-11 Score=94.34 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=61.4
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceE-EEEEeCCHHHHHHHHhhc--cccCC--eEEEE
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGF-GFVTYADPSVVDKVIEDT--HIING--KQVEI 93 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~-afV~f~~~~~a~~al~~~--~~i~g--~~i~v 93 (367)
.|+|.||++ .+++++|+++|++||+|++|+|+.. .|| |||+|.+.++|++|++.+ ..|.+ +.|.|
T Consensus 27 ~l~V~NL~~----~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 27 LLSIQNPLY----PITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEESCCS----CCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEcCcCC----CCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 457899999 9999999999999999999999752 276 999999999999999955 47776 58888
Q ss_pred eeccCCC
Q 017735 94 KRTIPKG 100 (367)
Q Consensus 94 ~~~~~~~ 100 (367)
.++.++.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 8887664
No 369
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.19 E-value=3.2e-11 Score=107.56 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=65.3
Q ss_pred cccccceEeccCCCCCCchh---------hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc-
Q 017735 14 NRQTTTQKMTGLSLTPVTEP---------ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT- 83 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~---------t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~- 83 (367)
.++.++|||.+|+. ++ ++++|+++|++||+|++|+|+. +|+||||+|.+.++|++|++.+
T Consensus 131 ~~~~rtLfVgnL~~----~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 131 RKKNKTLYVGGIDG----ALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp CCCCCEEEEECTTG----GGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCceeecCCCCh----hhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhC
Confidence 45678999999998 55 8999999999999999999985 4689999999999999999844
Q ss_pred -ccc------------CCeEEEEeeccCCCC
Q 017735 84 -HII------------NGKQVEIKRTIPKGA 101 (367)
Q Consensus 84 -~~i------------~g~~i~v~~~~~~~~ 101 (367)
+.| .++.|.|+++.+...
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 366 789999999876543
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=4.4e-11 Score=93.29 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=68.0
Q ss_pred ccccceEeccCCCC--CCc----hhhHHHHHHhhccCCCccEEEEeeCCCC--CCcceEEEEEeCCHHHHHHHHhhc--c
Q 017735 15 RQTTTQKMTGLSLT--PVT----EPALAQFIKHFGKYGEITDSVIMKDRKT--GQPRGFGFVTYADPSVVDKVIEDT--H 84 (367)
Q Consensus 15 ~~~~~~~v~~L~~~--~~~----~~t~~~l~~~F~~~G~i~~~~i~~~~~t--g~srG~afV~f~~~~~a~~al~~~--~ 84 (367)
.++++|.+.|+... +.. +.++++|+++|++||+|++|+|++++.+ .+++|++||+|+++++|++|++.+ .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46778888888542 111 2356899999999999999999988754 468999999999999999999944 5
Q ss_pred ccCCeEEEEeeccC
Q 017735 85 IINGKQVEIKRTIP 98 (367)
Q Consensus 85 ~i~g~~i~v~~~~~ 98 (367)
.++++.|.+....+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 89999999987643
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.16 E-value=1.6e-11 Score=95.65 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=53.5
Q ss_pred hhhHHHHHHhh------------ccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh--ccccCCeEEEEeec
Q 017735 32 EPALAQFIKHF------------GKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED--THIINGKQVEIKRT 96 (367)
Q Consensus 32 ~~t~~~l~~~F------------~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~~ 96 (367)
++++++|+++| ++||+|++|+|++++. ++++|||||+|.++++|++|++. ...++++.|.|.++
T Consensus 26 ~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 55666555555 9999999999998874 78999999999999999999984 45889999988764
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=9.9e-11 Score=87.19 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=63.4
Q ss_pred CCcceEEEeCCCC----CCCH----HHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC
Q 017735 107 FKTKKIFVGGIPS----SVNE----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 178 (367)
Q Consensus 107 ~~~~~l~V~~lp~----~~te----~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g 178 (367)
++.-||+|..++. ++.+ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+ ||+..+.+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4566788877762 2333 5789999999999999999873 8999999999999998 99999999
Q ss_pred eeeEeeecCCCC
Q 017735 179 AQVEVKKAEPKK 190 (367)
Q Consensus 179 ~~l~v~~a~~~~ 190 (367)
+.|+|+++++.-
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999987653
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=6.5e-10 Score=87.79 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=64.6
Q ss_pred ccccceEeccCCCCCC------chhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc--ccc
Q 017735 15 RQTTTQKMTGLSLTPV------TEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT--HII 86 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~------~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~--~~i 86 (367)
.++++|.+.|+..... .+..+++|+++|++||+|++|.|.++. ++|++||+|.+.++|++|++.+ ..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567788888876432 345677899999999999999997653 5899999999999999999954 589
Q ss_pred CCeEEEEeecc
Q 017735 87 NGKQVEIKRTI 97 (367)
Q Consensus 87 ~g~~i~v~~~~ 97 (367)
+++.|.|....
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999998764
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=1.9e-10 Score=107.98 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=56.0
Q ss_pred HhhhccccccceEecc--CCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc
Q 017735 9 LTMFINRQTTTQKMTG--LSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 9 ~~~~~~~~~~~~~v~~--L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~ 84 (367)
.....+.++++|||.| |++ .+++++|+++|++||+|++|.|.. +|+||||+|++.++|++|++.++
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~----~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln 77 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGN----GVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN 77 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGG----TCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTT
T ss_pred CceecCCCCCEEEEEcCCCCC----CCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 3444567888999999 566 899999999999999999887653 56899999999999999999654
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=4.9e-09 Score=92.73 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=61.1
Q ss_pred CCHHHHHHhhccCCceeEEEEeeC----CCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCC
Q 017735 121 VNEDEFKDFFMQFGDVQEHQIMRD----HSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 188 (367)
Q Consensus 121 ~te~~L~~~f~~~G~v~~v~i~~~----~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~ 188 (367)
-.+++|++.|++||.|.+|.|+++ +.+++++|++||+|.+.++|++|++.||+..+++|+|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 456899999999999999999855 34558999999999999999999999999999999999998753
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=7.9e-10 Score=82.70 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCCcceEEEeCCCCC-----CCH----HHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 106 DFKTKKIFVGGIPSS-----VNE----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~-----~te----~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
-++..||+|..++.+ +.+ .+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+||+ ||+..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456789999988743 222 5688999999999999999884 9999999999999998 999999
Q ss_pred CCeeeEeeecC
Q 017735 177 AGAQVEVKKAE 187 (367)
Q Consensus 177 ~g~~l~v~~a~ 187 (367)
+++.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-08 Score=73.84 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=63.0
Q ss_pred ccccceEeccCCC----CCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCCe
Q 017735 15 RQTTTQKMTGLSL----TPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGK 89 (367)
Q Consensus 15 ~~~~~~~v~~L~~----~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g~ 89 (367)
.+..||+|..++. +.-++.-..+|.+.|++||+|..++++.++ +||+|.+.++|.+||+ +...+.++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 3556777777652 222345567899999999999999999875 8999999999999999 44589999
Q ss_pred EEEEeeccCCC
Q 017735 90 QVEIKRTIPKG 100 (367)
Q Consensus 90 ~i~v~~~~~~~ 100 (367)
.|+|+.+.+..
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999987764
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=8.1e-08 Score=73.22 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=66.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccC-----CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeE
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQF-----GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 182 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~-----G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~ 182 (367)
..++|-|-+||+.++++.|+.+++++ +.|++|.+..|. +-|+|+|+|..+|.+|.-+|++.+|.+++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46789999999999999999999999 999999999985 3699999999999999999999999999999
Q ss_pred eee
Q 017735 183 VKK 185 (367)
Q Consensus 183 v~~ 185 (367)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 954
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=6e-08 Score=76.80 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=58.3
Q ss_pred ccccceEeccCCCCCCch-hhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCC-HHHHHHHHhhcc----ccCC
Q 017735 15 RQTTTQKMTGLSLTPVTE-PALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD-PSVVDKVIEDTH----IING 88 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~-~~~a~~al~~~~----~i~g 88 (367)
..-..|+|.+|+. + ++.++|+++|++|++|..|.++++.. .|||+|.+ +++|++|+++++ .|.+
T Consensus 16 ~~G~il~v~~l~~----~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 16 KIGCLLKFSGDLD----DQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCCEEEEEESCC----SSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cCCeEEEEecCCC----CcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 4567899999999 8 99999999999999999999999876 69999999 789999988542 4555
Q ss_pred eEEEEe
Q 017735 89 KQVEIK 94 (367)
Q Consensus 89 ~~i~v~ 94 (367)
..++++
T Consensus 86 ~~~~~e 91 (121)
T 1owx_A 86 KEVTWE 91 (121)
T ss_dssp SSEEEE
T ss_pred cEEEEE
Confidence 555544
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=7.8e-08 Score=84.92 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=62.9
Q ss_pred cceEeccCCC-CCCchhhHHHHHHhhccCCCccEEEEeeCCC----CCCcceEEEEEeCCHHHHHHHHhhc--cccCCeE
Q 017735 18 TTQKMTGLSL-TPVTEPALAQFIKHFGKYGEITDSVIMKDRK----TGQPRGFGFVTYADPSVVDKVIEDT--HIINGKQ 90 (367)
Q Consensus 18 ~~~~v~~L~~-~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~----tg~srG~afV~f~~~~~a~~al~~~--~~i~g~~ 90 (367)
..+.+.++.. ....+..+++|++.|++||+|+++.|+++.. +.+++|++||+|.+.++|++|++.+ ..++++.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 3444444443 2344567789999999999999999996654 4489999999999999999999944 5899999
Q ss_pred EEEeecc
Q 017735 91 VEIKRTI 97 (367)
Q Consensus 91 i~v~~~~ 97 (367)
|.+....
T Consensus 205 i~~~~~~ 211 (222)
T 3dxb_A 205 VVAEVYD 211 (222)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9988754
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=7.3e-08 Score=72.05 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=62.4
Q ss_pred hccccccceEeccCCCC-----CCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccc
Q 017735 12 FINRQTTTQKMTGLSLT-----PVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHI 85 (367)
Q Consensus 12 ~~~~~~~~~~v~~L~~~-----~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~ 85 (367)
..-.+..|++|..++.. .-++.-..+|++.|++||+|..++++.++ +||+|.+.++|.+||+ +...
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~ 81 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMK 81 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCee
Confidence 33456788888887631 12234456799999999999999999875 8999999999999999 5569
Q ss_pred cCCeEEEEeecc
Q 017735 86 INGKQVEIKRTI 97 (367)
Q Consensus 86 i~g~~i~v~~~~ 97 (367)
+.++.|+|+...
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998654
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.2e-05 Score=60.83 Aligned_cols=76 Identities=28% Similarity=0.430 Sum_probs=63.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHhhccC-----CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeee
Q 017735 107 FKTKKIFVGGIPSSVNEDEFKDFFMQF-----GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 181 (367)
Q Consensus 107 ~~~~~l~V~~lp~~~te~~L~~~f~~~-----G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l 181 (367)
...++|.|.|||..+.++.|+-+|++- |+|+.|+... .-|+|+|.+.++|+++|++ ..+.|++.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 346799999999999999999999872 6899888765 2699999999999999987 5788999999
Q ss_pred EeeecCCCCC
Q 017735 182 EVKKAEPKKP 191 (367)
Q Consensus 182 ~v~~a~~~~~ 191 (367)
.|....++.+
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9987665544
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2e-05 Score=59.56 Aligned_cols=87 Identities=16% Similarity=0.358 Sum_probs=71.2
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccC-----CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh-ccccCCe
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKY-----GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGK 89 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~-~~~i~g~ 89 (367)
...+|.|.+|+. +++++.|.-+|+.- |+|++++... .-|+|+|.+.+.|++.|++ .|.+++.
T Consensus 7 ~~~~I~V~~lPp----~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPP----AVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCT----TSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSS
T ss_pred CccEEEEECCCC----CCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCe
Confidence 457899999999 77888888888872 4788887764 2799999999999999996 8999999
Q ss_pred EEEEeeccCCCCCCCCCCCcceEEEeCCCCCCC
Q 017735 90 QVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVN 122 (367)
Q Consensus 90 ~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~t 122 (367)
.|.|....+. ...+|++.+|+..++
T Consensus 75 ~LsV~P~~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAPPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECCCC--------CCCCCCCCSCCCCCC
T ss_pred EEEEEcCCCC--------CcceEeeecCCCCCC
Confidence 9999765444 456788999988775
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=4.3e-05 Score=58.03 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=63.5
Q ss_pred cceEEEeCCCCCC-CH----HHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 109 TKKIFVGGIPSSV-NE----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 109 ~~~l~V~~lp~~~-te----~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
.++|+|.||+.++ +. +.++++|.+|.++......+.- + -..|.|.++++|.+|...||+..+.++.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998875 22 5678999999999888777642 1 4789999999999999999999999999999
Q ss_pred eecCCC
Q 017735 184 KKAEPK 189 (367)
Q Consensus 184 ~~a~~~ 189 (367)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998844
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=7.8e-05 Score=56.87 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=58.9
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccC-----CCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh--hccccCC
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKY-----GEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIING 88 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~--~~~~i~g 88 (367)
..+++-+-+||. .++.+.|+.+++++ +.|+++.++.|.. =|+|+|++..+|-+|.- +..+|++
T Consensus 20 ~~rtiaL~~ipD----tvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 20 LETLICLFPLSD----KVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TTSCEEEECCCT----TCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CCcEEEEecCCC----CCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecC
Confidence 367888888887 89999999999999 9999999999875 79999999999888764 5567888
Q ss_pred eEEEEe
Q 017735 89 KQVEIK 94 (367)
Q Consensus 89 ~~i~v~ 94 (367)
+.|.+-
T Consensus 90 r~Lr~g 95 (117)
T 2l9w_A 90 KVIRSG 95 (117)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 888763
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.66 E-value=0.00038 Score=51.86 Aligned_cols=78 Identities=8% Similarity=0.203 Sum_probs=60.7
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCC--cccEEEEEeCCHHHHHHHHHhcCCcccCCe-----eeE
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSR--SRGFGFITFDTEQAVDDLLAKGNKLELAGA-----QVE 182 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~--~~G~afV~F~~~~~a~~Al~~l~g~~~~g~-----~l~ 182 (367)
++|.|.+||..+||+++.+.+....++.....+..+.+.+ .-.-|+|.|.+.+++....+.++++.|.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5789999999999999999999888887777766543332 234599999999999999999998887542 344
Q ss_pred eeecC
Q 017735 183 VKKAE 187 (367)
Q Consensus 183 v~~a~ 187 (367)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55554
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00045 Score=52.42 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=64.5
Q ss_pred ccccceEeccCCCCCCchhhH-HHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc--ccCCeEE
Q 017735 15 RQTTTQKMTGLSLTPVTEPAL-AQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQV 91 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~-~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~--~i~g~~i 91 (367)
.-+++++|.||+..+-..... ++++++|..|.++.....+++.. -..|.|.++++|.+|...+| .+.++.+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346889999997755444444 68899999999999998888764 57899999999999988555 7899999
Q ss_pred EEeeccCCC
Q 017735 92 EIKRTIPKG 100 (367)
Q Consensus 92 ~v~~~~~~~ 100 (367)
++..+++..
T Consensus 77 r~YFgq~~~ 85 (104)
T 1wey_A 77 KLYFAQTLH 85 (104)
T ss_dssp EEECCCCSS
T ss_pred EEEecCCCC
Confidence 999887543
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.00051 Score=53.56 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCC-eeeEee
Q 017735 106 DFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQVEVK 184 (367)
Q Consensus 106 ~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g-~~l~v~ 184 (367)
....+.|.|-++|... .+.|.++|++||+|.++..... .-+-.|.|+++.+|++||.+ |+..|++ ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 3456788899999885 5678889999999999887322 34899999999999999988 9999874 667777
Q ss_pred ecC
Q 017735 185 KAE 187 (367)
Q Consensus 185 ~a~ 187 (367)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.36 E-value=0.00055 Score=51.09 Aligned_cols=54 Identities=15% Similarity=0.370 Sum_probs=44.1
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
...++| .+|.++...||.++|+.|+.| .|+.+.|. .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345555 999999999999999999854 44555552 7999999999999999865
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.22 E-value=0.0012 Score=49.46 Aligned_cols=80 Identities=6% Similarity=0.129 Sum_probs=56.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCc--ccEEEEEeCCHHHHHHHHHhcCCcccCCe-----e
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRS--RGFGFITFDTEQAVDDLLAKGNKLELAGA-----Q 180 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~--~G~afV~F~~~~~a~~Al~~l~g~~~~g~-----~ 180 (367)
.+-+|.|..||..+||+++.+.++..-++.....+....+.+. -.-|+|.|.+.+++....+.+++..+-+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4568999999999999999998887655544333332222221 23489999999999999999998887542 3
Q ss_pred eEeeecC
Q 017735 181 VEVKKAE 187 (367)
Q Consensus 181 l~v~~a~ 187 (367)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4455543
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.16 E-value=0.00061 Score=51.01 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=43.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
.++| .+|.++...||.++|+.||. ..|..+.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999984 455555553 79999999999999998764
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.82 E-value=0.006 Score=47.50 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=51.1
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCC-eEEEE
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIING-KQVEI 93 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g-~~i~v 93 (367)
....|.|-..+. ...+.|.++|++||+|.+...... ..+-.|.|.++.+|++||. +...|.+ ..|-|
T Consensus 23 ~~~wVtVFGFp~-----~~~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQ-----ASASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCG-----GGHHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 456677777775 457788999999999998887322 2389999999999999999 4455553 44444
Q ss_pred ee
Q 017735 94 KR 95 (367)
Q Consensus 94 ~~ 95 (367)
+.
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.18 E-value=0.0016 Score=63.06 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=49.6
Q ss_pred HHHHhhhccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 6 TEILTMFINRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
.++++.-.+...++|+|. .+. ++++++|.+.|++||+|.++.+.+++. -||.|||.+.++++++++.
T Consensus 42 ~~~~~~r~~qa~rsv~v~-~~~----~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 42 SEMQNERREQAQRTVLIH-CPE----KISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHHHHHHHTEEEEE-ECC----C---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred HHHHHHHHHHhcceEEEE-cCC----CCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 455566666677899997 455 899999999999999999999887653 5999999999999988763
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.14 E-value=0.0028 Score=61.36 Aligned_cols=56 Identities=16% Similarity=0.475 Sum_probs=42.9
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
.++|+|. +|..+++.+|.+.|++||+|.++.+-.+. .-||+|||.+.+++++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4689997 79999999999999999999999887653 35999999999999988754
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.10 E-value=0.015 Score=43.43 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=43.0
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~ 83 (367)
.|++-.+|. ++...||.++|+.|+.| .|+.+.|- .|||.|.+++.|..|++.+
T Consensus 17 HVf~l~FP~----ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHVTFPK----EWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEEECCT----TCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEEeCCh----hhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 455547877 99999999999999955 46666664 7999999999999998843
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.82 E-value=0.015 Score=45.97 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=51.2
Q ss_pred cccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeC---------CCCCC-----cceEEEEEeCCHHHHHHH
Q 017735 14 NRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKD---------RKTGQ-----PRGFGFVTYADPSVVDKV 79 (367)
Q Consensus 14 ~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~---------~~tg~-----srG~afV~f~~~~~a~~a 79 (367)
+.....|.|-..| ......+.++|++||.|.+-..+.+ +.+++ ...+..|+|.++.+|++|
T Consensus 4 ~~~e~~VtVFGFp-----~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rA 78 (132)
T 3p3d_A 4 SNGELAILVFGYP-----ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDA 78 (132)
T ss_dssp ----CEEEEECCC-----GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHH
T ss_pred ccCceEEEEEecC-----HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHH
Confidence 3455667777776 4667778899999999877322211 00111 235789999999999999
Q ss_pred Hh-hccccCCeEEEEeec
Q 017735 80 IE-DTHIINGKQVEIKRT 96 (367)
Q Consensus 80 l~-~~~~i~g~~i~v~~~ 96 (367)
|. +...|++..|=|+..
T Consensus 79 L~~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 79 LLENGAVFNGVLLGVIPY 96 (132)
T ss_dssp HTTTTCEETTEECEEEEC
T ss_pred HHhCCeEeCcEEEEEEEC
Confidence 98 667788876555443
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.50 E-value=0.016 Score=45.71 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=53.9
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEE-EEeeC--------CCCC-----CcccEEEEEeCCHHHHHHHHHhcCCc
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEH-QIMRD--------HSTS-----RSRGFGFITFDTEQAVDDLLAKGNKL 174 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v-~i~~~--------~~~g-----~~~G~afV~F~~~~~a~~Al~~l~g~ 174 (367)
...|.|-+.|.+.+ ..+.+.|++||.|.+. .+..+ +... ....+..|+|+++.+|++||.+ |+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 35677778876655 4566789999998762 21110 0000 1245789999999999999988 999
Q ss_pred ccCCeeeEeeecC
Q 017735 175 ELAGAQVEVKKAE 187 (367)
Q Consensus 175 ~~~g~~l~v~~a~ 187 (367)
.|++.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887765
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.40 E-value=0.017 Score=43.14 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=41.4
Q ss_pred eEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 20 QKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 20 ~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
|++-.+|. ++...||.++|+.||.| .|+.+.|- .|||.|.+++.|..|++.
T Consensus 8 V~~l~FP~----ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 8 VLHVTFPK----EWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEECCT----TCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred EEEEeCCh----hhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 44447777 99999999999999844 46666654 799999999999999884
No 399
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.63 E-value=0.12 Score=38.31 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=47.4
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCC--cceEEEEEeCCHHHHHHHHhh
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQ--PRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~--srG~afV~f~~~~~a~~al~~ 82 (367)
++|.|.+||+ .+|++++.+.+..+.++.....+.-+.+.+ .-.-|+|.|.+.+++....+.
T Consensus 2 ~KvVIRrLPP----~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPP----TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECT----TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCC----CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 4688999999 999999999999987766666655543322 235699999999999888774
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.67 E-value=0.18 Score=37.62 Aligned_cols=63 Identities=5% Similarity=-0.013 Sum_probs=42.9
Q ss_pred cccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCC--cceEEEEEeCCHHHHHHHHhh
Q 017735 16 QTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQ--PRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 16 ~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~--srG~afV~f~~~~~a~~al~~ 82 (367)
.+..|.|..||+ .+|++++.+.+..+-++.....+.-+.+.+ .-.-|+|.|.+.+++....+.
T Consensus 8 ~~~KvVIRrLPP----~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 8 HSHMVVIRRLPP----GLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCEEEECCCS----CSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred cceeEEEeCCCC----CCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 456789999999 999999988887765432222222221111 114589999999999988874
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.52 E-value=0.48 Score=46.48 Aligned_cols=55 Identities=15% Similarity=0.369 Sum_probs=44.3
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 172 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~ 172 (367)
...++|. +|..+...+|.++|+.|+.| +|..+.+. .|||.|.+.++|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4566666 88899999999999999954 55555442 79999999999999998764
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.54 E-value=2.3 Score=29.75 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCHHHHHHhhccCC-----ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecC
Q 017735 121 VNEDEFKDFFMQFG-----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 187 (367)
Q Consensus 121 ~te~~L~~~f~~~G-----~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~ 187 (367)
+...+|..++.... .|-.|+|..+ |+||+-... .++++++.|+...+.++.+.|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 56667777765433 4557777654 788887654 4667888888889999999988764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=76.91 E-value=14 Score=26.65 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=48.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC-------cccCCee
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-------LELAGAQ 180 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g-------~~~~g~~ 180 (367)
..+-|-|-|+|..+-..++.-.....|---.++.+. |-|.|.|.+.++-..|+.+|-. .+|.++.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 456778899999998888776666666555555542 3699999999999999987522 2345555
Q ss_pred eEee
Q 017735 181 VEVK 184 (367)
Q Consensus 181 l~v~ 184 (367)
+.|-
T Consensus 83 cdvi 86 (129)
T 4eyt_A 83 CDVI 86 (129)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5553
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.97 E-value=6.4 Score=38.43 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=35.5
Q ss_pred hhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhc
Q 017735 32 EPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~ 83 (367)
.+...+|.++|+.|+.| +|+.+.+. .|||.|.+.++|..+++..
T Consensus 450 ~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 450 EWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp TCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 66778999999999854 56655443 7999999999999998854
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.40 E-value=28 Score=25.15 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=48.1
Q ss_pred ccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEe
Q 017735 15 RQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 94 (367)
Q Consensus 15 ~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~ 94 (367)
+++.-+.+.|+|. .+...++.-.....|--..|..+. |-|.|.|.+.++...|++.+..-+..++.++
T Consensus 10 kqnclikiinipq----gtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 10 KQNCLIKIINIPQ----GTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp CCSCEEEEECCCT----TCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred hhCcEEEEEecCC----CceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 4566778888887 666666665566666555666553 3589999999999999986654555555554
Q ss_pred e
Q 017735 95 R 95 (367)
Q Consensus 95 ~ 95 (367)
.
T Consensus 78 i 78 (129)
T 4eyt_A 78 I 78 (129)
T ss_dssp E
T ss_pred E
Confidence 3
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=59.51 E-value=16 Score=24.55 Aligned_cols=57 Identities=4% Similarity=-0.033 Sum_probs=42.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l 171 (367)
...+|.|.++.=..-...|++.+.+ -.|..+.+... ..-+.|+|++.+++.++|+.+
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 3457888888877788889999988 78888877543 236788888677777888763
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=57.52 E-value=44 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.4
Q ss_pred cceEEEEEeCCHHHHHHHHhhc
Q 017735 62 PRGFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 62 srG~afV~f~~~~~a~~al~~~ 83 (367)
..||.||++...+++..++++.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTC
T ss_pred cCCEEEEEEecchhHHHHHHCC
Confidence 7899999999999998888854
No 408
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=53.91 E-value=70 Score=24.27 Aligned_cols=127 Identities=9% Similarity=0.180 Sum_probs=74.7
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCC----HHHHHHHHhhccccCCeEEEEe
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD----PSVVDKVIEDTHIINGKQVEIK 94 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~----~~~a~~al~~~~~i~g~~i~v~ 94 (367)
++.|.++.- ..-...|.+.+...-.|..+.+-... .-+.|+|.. .++..+++++. +..+.+.
T Consensus 7 ~~~v~gm~C----~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~----G~~~~~~ 72 (149)
T 2ew9_A 7 FLQIKGMTC----ASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQDL----GFEAAVM 72 (149)
T ss_dssp EEEEECCCS----SSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH----TCEEEEC
T ss_pred EEEECCeec----HHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhcC----CCceEee
Confidence 456667665 44455566666666566666654332 146677642 34555555532 2222221
Q ss_pred eccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHh
Q 017735 95 RTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAK 170 (367)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~----~~~~a~~Al~~ 170 (367)
.. ........+|.|.++.-..-...|++.+++.-.|..+.+... ...+.|+|+ +.+++.++|+.
T Consensus 73 ~~------~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 140 (149)
T 2ew9_A 73 ED------YAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEE 140 (149)
T ss_dssp SC------SCCSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHH
T ss_pred cc------cccccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHh
Confidence 10 001123456888888776666788888888877888877554 236888886 35667777776
Q ss_pred c
Q 017735 171 G 171 (367)
Q Consensus 171 l 171 (367)
+
T Consensus 141 ~ 141 (149)
T 2ew9_A 141 I 141 (149)
T ss_dssp H
T ss_pred C
Confidence 4
No 409
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=52.63 E-value=78 Score=24.43 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=58.8
Q ss_pred hHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceE
Q 017735 34 ALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKI 112 (367)
Q Consensus 34 t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l 112 (367)
...+|.+.|.+.+ +|..+.+.... . .++.-++..+.+.|.+++++. +..+... .+
T Consensus 19 ~l~~i~~~la~~~inI~~i~~~~~~---~-~~~~~~~~~d~~~a~~~L~~~----G~~v~~~----------------sv 74 (144)
T 2f06_A 19 RLTEVTEVLAKENINLSALCIAENA---D-FGILRGIVSDPDKAYKALKDN----HFAVNIT----------------DV 74 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECS---S-CEEEEEEESCHHHHHHHHHHT----TCCEEEE----------------EE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEeCCHHHHHHHHHHc----CCeEeee----------------eE
Confidence 4567778887766 45555443221 1 133323367888888888743 1111100 12
Q ss_pred EEeCCCCCC-CHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 113 FVGGIPSSV-NEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 113 ~V~~lp~~~-te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
..-.++... .-.++-+.+.+.+ .|..+..... ..+....|++++.+.|.++|++ .++.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~----~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN----NNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEcc----CCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 222333322 2244445554443 4544333321 1255677899999999999887 44443
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.52 E-value=43 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=33.4
Q ss_pred ceEEEeCCCC-C--------CCHHHHHHhh--ccCCceeEEEEeeCCCCCCcccEEEEEeCCH
Q 017735 110 KKIFVGGIPS-S--------VNEDEFKDFF--MQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 161 (367)
Q Consensus 110 ~~l~V~~lp~-~--------~te~~L~~~f--~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~ 161 (367)
-++.|-|+|. . .+.++|++.| ..|.+++...+... .-+.++|+|+|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCC
Confidence 3556667765 1 3457899977 89988775544433 23678999999864
No 411
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=51.85 E-value=4.3 Score=30.67 Aligned_cols=51 Identities=4% Similarity=0.080 Sum_probs=30.4
Q ss_pred CCHHHHHHhhccCCceeEEEEeeCCCCCCcccEE--EEEeCCHHHHHHHHHhcCC
Q 017735 121 VNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG--FITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 121 ~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~a--fV~F~~~~~a~~Al~~l~g 173 (367)
.++++|.++..+.. +..+.+......++.. |. +=.|.+.++|.+|++.|..
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 44566667666664 4445555433333322 22 2278899999999988743
No 412
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=45.67 E-value=64 Score=24.45 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=51.6
Q ss_pred CCHHHHHHHHhhcc----ccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHH---hhccCCceeEEEEee
Q 017735 71 ADPSVVDKVIEDTH----IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKD---FFMQFGDVQEHQIMR 143 (367)
Q Consensus 71 ~~~~~a~~al~~~~----~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~---~f~~~G~v~~v~i~~ 143 (367)
.+.+..++|++++. ++.+..... . +-..-.|.|..+|..+..+-.++ +-..|-.-....|+-
T Consensus 11 ddlea~ekalkemirqarkfagtvtyt-l----------~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~img 79 (170)
T 4hhu_A 11 DDLEALEKALKEMIRQARKFAGTVTYT-L----------SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMG 79 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEE-E----------ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHhhcceEEEE-E----------eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEe
Confidence 46778888887542 333321110 0 11223566778887664432221 112232333344443
Q ss_pred CCCCCCcccEEEEEe--CCHHHHHHHHHhc-------CC---cccCCeeeEeee
Q 017735 144 DHSTSRSRGFGFITF--DTEQAVDDLLAKG-------NK---LELAGAQVEVKK 185 (367)
Q Consensus 144 ~~~~g~~~G~afV~F--~~~~~a~~Al~~l-------~g---~~~~g~~l~v~~ 185 (367)
. ..+.-.|.| ++.++.++|++.| .+ ..+++..|.+..
T Consensus 80 s-----gsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~i 128 (170)
T 4hhu_A 80 S-----GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVI 128 (170)
T ss_dssp T-----TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEE
T ss_pred C-----CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEE
Confidence 2 245677778 5789999998754 12 335666666543
No 413
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=45.01 E-value=81 Score=25.96 Aligned_cols=125 Identities=8% Similarity=-0.023 Sum_probs=64.1
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEe-CCHHHHHHHHhhc-cccCCeEEEE--e
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY-ADPSVVDKVIEDT-HIINGKQVEI--K 94 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f-~~~~~a~~al~~~-~~i~g~~i~v--~ 94 (367)
..++..+...-...+..+||+++|+..| ..+|+-... + |..+.+- .+.+++++.|++. ..-.+..+.| .
T Consensus 8 iaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--S----GNvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~vr 80 (183)
T 2hiy_A 8 ALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--S----GNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSLL 80 (183)
T ss_dssp EEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--T----TEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCEEE
T ss_pred hhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--c----CCEEEecCCCHHHHHHHHHHHHHHhcCCCCCEEEe
Confidence 3455566554455778999999999886 444444432 2 2322222 2334444444411 1112222222 1
Q ss_pred e------ccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccC-CceeEEEEeeCCCCCCcccEEEE-EeC
Q 017735 95 R------TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFI-TFD 159 (367)
Q Consensus 95 ~------~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~-G~v~~v~i~~~~~~g~~~G~afV-~F~ 159 (367)
. .....+..... +..+++|.-|+..++.++|.+.+... ...+.+.+... ..|+ .|.
T Consensus 81 s~~el~~i~~~~Pf~~~~-~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~~--------~iy~~~~~ 144 (183)
T 2hiy_A 81 SLEDFEAELENLPAWWSR-DLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGKL--------GIFWGKFS 144 (183)
T ss_dssp EHHHHHHHHTTCCGGGGS-CCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECSS--------EEEEEECC
T ss_pred cHHHHHHHHHhCCCCccC-CCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEECC--------EEEEEEeC
Confidence 1 11111111111 46788888899999999877655433 24455555432 5677 673
No 414
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=43.26 E-value=98 Score=23.41 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=37.1
Q ss_pred ceEEEeCCCCCCCHHHHHHhh-------ccCCceeEEEEeeCCCC-CCcccE---EEEEeCCHHHHHHHH
Q 017735 110 KKIFVGGIPSSVNEDEFKDFF-------MQFGDVQEHQIMRDHST-SRSRGF---GFITFDTEQAVDDLL 168 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f-------~~~G~v~~v~i~~~~~~-g~~~G~---afV~F~~~~~a~~Al 168 (367)
+-|.+-.|...+++++++++. .+.-.|+.+.+-++... ...++| .+++|+|.++.+.-+
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 345555777788777655444 34667778877766432 333444 356999998876644
No 415
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.29 E-value=41 Score=24.82 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=42.8
Q ss_pred EeCCCCCCCHHHHHHh-hccCCceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEeeecCCC
Q 017735 114 VGGIPSSVNEDEFKDF-FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 189 (367)
Q Consensus 114 V~~lp~~~te~~L~~~-f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v~~a~~~ 189 (367)
|-.++..++-+||..- -+.||.-.++..+.+ -..|-..+.++.++||+.|+-. ..-+.|+|-+..++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 3345566777777544 466787777776632 3678999999999999987543 22333444444333
No 416
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=42.12 E-value=55 Score=21.51 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=40.5
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHhc
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 171 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~----~~~~a~~Al~~l 171 (367)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ..-+.|+|+ +.+++.++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45677777766667788888888878888877654 236889985 456777777763
No 417
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=40.19 E-value=25 Score=25.88 Aligned_cols=59 Identities=8% Similarity=-0.001 Sum_probs=36.6
Q ss_pred EEEEEeCCHHHHHHHHhhccccCCeE---EEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccC
Q 017735 65 FGFVTYADPSVVDKVIEDTHIINGKQ---VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 133 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~~~~~i~g~~---i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~ 133 (367)
|+++.|+.+.++.+-++....++... +.|+... ...-.++|| |..++++++++++.+++
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~--------Mr~YE~m~I--l~P~l~ee~~~~~ve~~ 68 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT--------PGRYEVNIV--LNPNLDQSQLALEKEII 68 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS--------SSCEEEEEE--CCSSCCHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhh--------hhhhheeee--eCCCCCHHHHHHHHHHH
Confidence 78999999888888887443343333 3333221 123345666 66778888887776654
No 418
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=38.71 E-value=1.1e+02 Score=22.95 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=35.6
Q ss_pred ceEEEeCCCCCCCHHHHHHhhc-------cCCceeEEEEeeCCCCCCcccE---EEEEeCCHHHHHHHH
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHSTSRSRGF---GFITFDTEQAVDDLL 168 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~-------~~G~v~~v~i~~~~~~g~~~G~---afV~F~~~~~a~~Al 168 (367)
+-|.+-.|...+++++++++.+ +.-.|+.+.+-.+.. ...++| .+++|+|.++.+.-+
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 3455556777787776555443 355677777766643 333444 356899888876543
No 419
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=36.40 E-value=1.2e+02 Score=21.92 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=32.5
Q ss_pred EeCCCCCCCHHHHHHhh-------ccCCceeEEEEeeCCCCCCcccE---EEEEeCCHHHHHH
Q 017735 114 VGGIPSSVNEDEFKDFF-------MQFGDVQEHQIMRDHSTSRSRGF---GFITFDTEQAVDD 166 (367)
Q Consensus 114 V~~lp~~~te~~L~~~f-------~~~G~v~~v~i~~~~~~g~~~G~---afV~F~~~~~a~~ 166 (367)
+-.|...+++++++++. .+.-.|+.+.+-.+.. ...++| -+++|+|.++.+.
T Consensus 10 lfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 10 MMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 33566667766554443 3466788888877643 444444 3568999888765
No 420
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.37 E-value=70 Score=23.18 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.4
Q ss_pred ccEEEEEeCCHHHHHHHHHhc
Q 017735 151 RGFGFITFDTEQAVDDLLAKG 171 (367)
Q Consensus 151 ~G~afV~F~~~~~a~~Al~~l 171 (367)
+||-.-+..++++.++.++.|
T Consensus 100 rgfevrtvtspddfkkslerl 120 (134)
T 2l69_A 100 RGFEVRTVTSPDDFKKSLERL 120 (134)
T ss_dssp TTCCEEEESSHHHHHHHHHHH
T ss_pred cCceEEEecChHHHHHHHHHH
Confidence 567777788899888888764
No 421
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=35.54 E-value=1.8e+02 Score=23.61 Aligned_cols=136 Identities=12% Similarity=0.202 Sum_probs=77.5
Q ss_pred ceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCC----HHHHHHHHhhccccCCeEEEEe
Q 017735 19 TQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD----PSVVDKVIEDTHIINGKQVEIK 94 (367)
Q Consensus 19 ~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~----~~~a~~al~~~~~i~g~~i~v~ 94 (367)
++.|.++.- ..-...|.+.+...-.|.++.+-... .-+.|+|.. .+++.++++... ..+..+.+.
T Consensus 23 ~l~v~Gm~C----~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~~-~gg~~v~~~ 91 (202)
T 2rop_A 23 QLRIDGMHC----KSCVLNIEENIGQLLGVQSIQVSLEN------KTAQVKYDPSCTSPVALQRAIEALP-PGNFKVSLP 91 (202)
T ss_dssp EEEEESGGG----STHHHHHHHHTTSBTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHTTSS-SSCSEEEC-
T ss_pred EEEECCeEc----HHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHhc-cCCeEEEec
Confidence 466777766 45566788888887777777765432 256777753 345555555320 011122110
Q ss_pred ecc-------------CCC----CCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEE
Q 017735 95 RTI-------------PKG----AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT 157 (367)
Q Consensus 95 ~~~-------------~~~----~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~ 157 (367)
... ... ..........+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~ 165 (202)
T 2rop_A 92 DGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA------EGTATVL 165 (202)
T ss_dssp ----------------------------CCEEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT------TTEEEEE
T ss_pred cccccccccccccccccccccccccccccceEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc------CCEEEEE
Confidence 000 000 00000112356888888766667788999988888888877554 2368888
Q ss_pred eCC----HHHHHHHHHhc
Q 017735 158 FDT----EQAVDDLLAKG 171 (367)
Q Consensus 158 F~~----~~~a~~Al~~l 171 (367)
|.. .+.+.++|+.+
T Consensus 166 ~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 166 YNPAVISPEELRAAIEDM 183 (202)
T ss_dssp ECTTTCCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHc
Confidence 863 46667777664
No 422
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=35.39 E-value=1.3e+02 Score=21.90 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=40.8
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHhc
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 171 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~----~~~a~~Al~~l 171 (367)
..+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|+. .+.+.++|+.+
T Consensus 9 ~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 345777777776677889999988877888877544 2368899874 45666677664
No 423
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=35.22 E-value=1.4e+02 Score=22.50 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=73.7
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeC----CHHHHHHHHhhccccCCeEEEE
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA----DPSVVDKVIEDTHIINGKQVEI 93 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~----~~~~a~~al~~~~~i~g~~i~v 93 (367)
.++.|..+.- ..-...+.+.+...-.|.++.+-... ..+.|+|. +.++..+++++. +..+.
T Consensus 8 ~~~~v~gm~C----~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~----G~~~~- 72 (151)
T 1p6t_A 8 IAMQVSGMTC----AACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEKL----GYHVV- 72 (151)
T ss_dssp EEEEEESCCS----SHHHHHHHHHHTTSSSEEEEEEEGGG------TEEEEEECTTTSCHHHHHHHHHHH----TCEEC-
T ss_pred EEEEECCCcC----HHHHHHHHHHHhcCCCeeEEEEEccC------CEEEEEEcCCcCCHHHHHHHHHHc----CCccc-
Confidence 3456666655 44556677777776666666654332 24556665 334444555432 11110
Q ss_pred eeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHH
Q 017735 94 KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLA 169 (367)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~----~~~~a~~Al~ 169 (367)
....+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|. +.+++.++|+
T Consensus 73 -------------~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~ 133 (151)
T 1p6t_A 73 -------------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVD 133 (151)
T ss_dssp -------------CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHH
T ss_pred -------------ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHH
Confidence 11246778888877778889999988888887776543 236888986 4567777777
Q ss_pred hc
Q 017735 170 KG 171 (367)
Q Consensus 170 ~l 171 (367)
.+
T Consensus 134 ~~ 135 (151)
T 1p6t_A 134 KL 135 (151)
T ss_dssp HH
T ss_pred Hc
Confidence 64
No 424
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.07 E-value=77 Score=22.77 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=25.0
Q ss_pred eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 017735 136 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 173 (367)
Q Consensus 136 v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g 173 (367)
|..|.++. ...||.||+++..+++..+++.+.+
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55555543 2689999999999999888877554
No 425
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=34.74 E-value=57 Score=22.77 Aligned_cols=59 Identities=8% Similarity=0.074 Sum_probs=36.3
Q ss_pred EEEEEeCCHHHHHHHHhhccccCCeEEE---EeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccC
Q 017735 65 FGFVTYADPSVVDKVIEDTHIINGKQVE---IKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQF 133 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~~~~~i~g~~i~---v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~ 133 (367)
|.++.|+.+.++.+-|+....++..-|+ |+...++ +--++|| |..+++|++++++.++|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r--------~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPG--------RYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTT--------EEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCC--------ceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 7899998877777777755445554443 3322211 2234565 45567888888777765
No 426
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=32.34 E-value=94 Score=19.67 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=37.3
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHhc
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 171 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~----~~~a~~Al~~l 171 (367)
.+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|.. .+.+.++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45777777655555678888888777877777543 2367888863 45566666653
No 427
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=32.33 E-value=88 Score=20.54 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=38.2
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhh
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED 82 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~ 82 (367)
.++.|.++.- ..-...|.+.+.. ..|..+.+-... ..+.|+|.+.+++.++|++
T Consensus 7 ~~~~v~gm~C----~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSC----HHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBC----GGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCC----HHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 4577888877 6677788888888 778777775432 3677888766666777764
No 428
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=31.60 E-value=1.5e+02 Score=21.73 Aligned_cols=58 Identities=14% Similarity=0.324 Sum_probs=35.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhc-------cCCceeEEEEeeCCCC-CCcccE---EEEEeCCHHHHHHHH
Q 017735 111 KIFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHST-SRSRGF---GFITFDTEQAVDDLL 168 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~-------~~G~v~~v~i~~~~~~-g~~~G~---afV~F~~~~~a~~Al 168 (367)
-|.+-.|...++++++.++.+ +.-.|+.+.+-.+... ...++| .+++|+|.++.+.-+
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 344445677777776554442 3556777777666433 233444 457999998876643
No 429
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=30.83 E-value=1.5e+02 Score=21.65 Aligned_cols=57 Identities=9% Similarity=0.256 Sum_probs=35.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhc-------cCCceeEEEEeeCCCC---CCcccE---EEEEeCCHHHHHHH
Q 017735 111 KIFVGGIPSSVNEDEFKDFFM-------QFGDVQEHQIMRDHST---SRSRGF---GFITFDTEQAVDDL 167 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~-------~~G~v~~v~i~~~~~~---g~~~G~---afV~F~~~~~a~~A 167 (367)
-|.+-.|...++++++.++.+ +.-.|+.+.+-.+... ...++| -+++|++.++.+.-
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 344456777777776554432 4566777777666432 334444 35689998887653
No 430
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=36.57 E-value=11 Score=28.42 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=36.8
Q ss_pred ccccccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcc-eEEEEEeCCHHHHHHHHhhc
Q 017735 13 INRQTTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPR-GFGFVTYADPSVVDKVIEDT 83 (367)
Q Consensus 13 ~~~~~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~sr-G~afV~f~~~~~a~~al~~~ 83 (367)
....+..-|+-.|.. ..++++|..+..+.. +..+.+.+....++.. -.-+=.|.+.++|++|++.+
T Consensus 18 l~s~p~~~YTLQL~a----~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~L 84 (106)
T 2lfv_A 18 LKSAPSSHYTLQLSS----SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTL 84 (106)
Confidence 334444445555554 455666777777664 4455555543322221 01233678888899888854
No 431
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=30.01 E-value=1e+02 Score=19.05 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=34.2
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeC---CHHHHHHHHHh
Q 017735 112 IFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAK 170 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~---~~~~a~~Al~~ 170 (367)
+.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+ +.+.+.++++.
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 5 FQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp ECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHH
Confidence 445555544455778888888877887777543 336788886 34556666655
No 432
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.74 E-value=51 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=21.5
Q ss_pred ceeEEEEeeCCCCCCcccEEEEEeCC
Q 017735 135 DVQEHQIMRDHSTSRSRGFGFITFDT 160 (367)
Q Consensus 135 ~v~~v~i~~~~~~g~~~G~afV~F~~ 160 (367)
+|.+|+|..-...++.++||-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887776678899999999975
No 433
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=29.62 E-value=1.4e+02 Score=20.48 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=39.3
Q ss_pred hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCC
Q 017735 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIING 88 (367)
Q Consensus 34 t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g 88 (367)
..+++.+.++.+.+|.+|..+. +...=...|.+.+.++.++.+. .+..+.+
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vt----G~~D~ll~v~~~d~~~l~~~i~~~l~~~~g 65 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVY----GEYDLIVKVETDTLKDLDQFITEKIRKMPE 65 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECB----SSCSEEEEEEESSHHHHHHHHHTTGGGCTT
T ss_pred CHHHHHHHHhCCCCeeEEEEEc----ccCCEEEEEEECCHHHHHHHHHHHhccCCC
Confidence 3578888899999999998884 4455578899999999999886 4444444
No 434
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=28.66 E-value=1.2e+02 Score=19.70 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=41.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHhc
Q 017735 108 KTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 171 (367)
Q Consensus 108 ~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~----~~~a~~Al~~l 171 (367)
...++.|.++.-......|++.+.+.-.|..+.+... ...+.|+|+. .+.+.++++.+
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3456788888777777889898888777777776544 2367888864 45666677654
No 435
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=28.45 E-value=1.4e+02 Score=20.96 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=38.9
Q ss_pred hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccC
Q 017735 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIIN 87 (367)
Q Consensus 34 t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~ 87 (367)
..+++.+.+.++.+|.+|..+. +...=...|...+.++.++.+. ....+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vt----G~~D~ll~v~~~d~~~l~~~l~~~l~~~~ 64 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSVT----GPYDLVALVRLKDVEELDDVVTQGILSLE 64 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEES----SSSSEEEEEEESSGGGHHHHCCCCCTTST
T ss_pred CHHHHHHHHhcCCCeEEEEEee----cCCCEEEEEEECCHHHHHHHHHHhcccCC
Confidence 4678889999999999999884 5555578899999999998874 444343
No 436
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.29 E-value=90 Score=23.23 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=27.5
Q ss_pred ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCccc
Q 017735 135 DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 176 (367)
Q Consensus 135 ~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~ 176 (367)
.|.+|..+.+ .+||-|||=.+..++..|++.+.....
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v~~ 76 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNLRL 76 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccceec
Confidence 3555544322 589999999999999999988765543
No 437
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.01 E-value=42 Score=29.72 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=27.2
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEee
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~ 143 (367)
..+.|+|||+.++...|.++++....+..+.+|.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998665666665554
No 438
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=26.44 E-value=1.5e+02 Score=19.97 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=39.0
Q ss_pred hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHh-hccccCC
Q 017735 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIING 88 (367)
Q Consensus 34 t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~-~~~~i~g 88 (367)
..+++.+.+..+.+|.+|..+. +...=.+.|...+.++.++.+. .+..+.+
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vt----G~~d~l~~v~~~d~~~l~~~~~~~l~~~~g 65 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVY----GVYDIVVKVEADSMDKLKDFVTNTIRKLPK 65 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEECS----SSCSEEEEEECSSHHHHHHHHHHTGGGSTT
T ss_pred CHHHHHHHHhCCCCeEEEEEEe----ccCCEEEEEEECCHHHHHHHHHHHhcCCCC
Confidence 3578888899999999998884 4455578899999999998886 5444444
No 439
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=26.39 E-value=80 Score=20.23 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=38.9
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeC---CHHHHHHHHHh
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAK 170 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~---~~~~a~~Al~~ 170 (367)
.++.|.++.-..-...|++.+.+.-.|..+.+... ..-+.|+|. +.+++.++|++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 45677777766667888899988878888877654 236788884 34566667665
No 440
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.10 E-value=63 Score=23.88 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.4
Q ss_pred ceeEEEEeeCCCCCCcccEEEEEeCC
Q 017735 135 DVQEHQIMRDHSTSRSRGFGFITFDT 160 (367)
Q Consensus 135 ~v~~v~i~~~~~~g~~~G~afV~F~~ 160 (367)
+|.+|+|.+-...++.++||-|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887766678899999999975
No 441
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=26.05 E-value=2.2e+02 Score=21.78 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=37.0
Q ss_pred hHHHHHHhhccCCCccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhcc
Q 017735 34 ALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 34 t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~ 84 (367)
..+++.+.+..+.+|.+|..+. +...=++.|...+.++.++.+++..
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~ 123 (144)
T 2cfx_A 77 DYERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTS 123 (144)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHT
T ss_pred cHHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhc
Confidence 3678888888999999998875 3344578899999999999887543
No 442
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.89 E-value=1.3e+02 Score=25.80 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=25.6
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEee
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~ 143 (367)
..+.|.|||+.++...|.++++....+..+.++.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 4588999999999999999987654455544443
No 443
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=25.75 E-value=73 Score=22.30 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCHHHHHHhhccCCce-eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcccCCeeeEe
Q 017735 121 VNEDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 183 (367)
Q Consensus 121 ~te~~L~~~f~~~G~v-~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~l~g~~~~g~~l~v 183 (367)
.|+++|+++++.|-.- ..| -.+|...+.++.++|.+..+..+|+-+.-+|
T Consensus 33 ktedelkkyleefrkesqni-------------kvlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNI-------------KVLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSE-------------EEEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCe-------------EEEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 3789999887766321 111 1344456677777877655566666555555
No 444
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=24.62 E-value=10 Score=32.40 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=23.9
Q ss_pred hhhHHHHHHhhccCCC-ccEEEEeeCCCCCCcceEEEEEeC-CHHHHHHHHhhcc
Q 017735 32 EPALAQFIKHFGKYGE-ITDSVIMKDRKTGQPRGFGFVTYA-DPSVVDKVIEDTH 84 (367)
Q Consensus 32 ~~t~~~l~~~F~~~G~-i~~~~i~~~~~tg~srG~afV~f~-~~~~a~~al~~~~ 84 (367)
..+.++|.++|...-+ +++... .+.+.. +.+++++.++++.
T Consensus 39 ~~~~~kI~~~f~~~~~e~~~lL~------------~i~~~~l~~~~~e~~L~~Lk 81 (215)
T 2yb5_A 39 DFLLNEINDIFKEKDIDISDFIT------------SIDDVKLTKKKAEHLLNELK 81 (215)
T ss_dssp HHHHHHHHHHHHTTTCCCTTHHH------------HHCCTTCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHcccCCHHHHHHHH------------HHHhccCCHHHHHHHHHHHH
Confidence 6677888888865432 222111 012234 7788898888653
No 445
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.33 E-value=91 Score=27.01 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEee
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMR 143 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~ 143 (367)
-..|.|||+.++.+.|.++++....+..+.+|.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 348999999999999999998766666666554
No 446
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.31 E-value=72 Score=23.78 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=20.4
Q ss_pred ceeEEEEeeCCCCCCcccEEEEEeCC
Q 017735 135 DVQEHQIMRDHSTSRSRGFGFITFDT 160 (367)
Q Consensus 135 ~v~~v~i~~~~~~g~~~G~afV~F~~ 160 (367)
+|.+|+|..-...++.++||-|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 56777777766678889999999975
No 447
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=24.12 E-value=1.4e+02 Score=18.68 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=36.0
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC---HHHHHHHHHh
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAK 170 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~---~~~a~~Al~~ 170 (367)
.++.|.++.-......|++.+.+.-.|..+.+... ...+.|+|+. .+.+.++++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35667777655556778888888877888777544 2367888874 3445555654
No 448
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=23.82 E-value=1.4e+02 Score=21.99 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=40.9
Q ss_pred cceEEEeCCCCCCCHHH--HHHhhc-----cCC--------ceeEEEEeeCCCCC---CcccEEEEEeCCHH---HHHHH
Q 017735 109 TKKIFVGGIPSSVNEDE--FKDFFM-----QFG--------DVQEHQIMRDHSTS---RSRGFGFITFDTEQ---AVDDL 167 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~--L~~~f~-----~~G--------~v~~v~i~~~~~~g---~~~G~afV~F~~~~---~a~~A 167 (367)
.+.|.|-+||+...+.. +..+|+ .|- .|.++.-.....+. .++ .-.|.|.... ...+|
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPR-hIIvK~~~~~~KErILka 81 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMKEKMLRA 81 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCC-EEEEEESCHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCC-eEEEEecccccHHHHHHH
Confidence 35688889998733222 333332 121 34444443332211 223 5677777654 44444
Q ss_pred HHhcCCcccCCeeeEeee
Q 017735 168 LAKGNKLELAGAQVEVKK 185 (367)
Q Consensus 168 l~~l~g~~~~g~~l~v~~ 185 (367)
..+....+..+.+|++..
T Consensus 82 ar~k~~vtykg~pirlsa 99 (100)
T 2w7a_A 82 AREKGRVTLKGKPIRLTV 99 (100)
T ss_dssp HHHHCCEEETTEEEEEEE
T ss_pred HHHhCceeeCCcceeecC
Confidence 444466888999998853
No 449
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.39 E-value=92 Score=22.26 Aligned_cols=51 Identities=8% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHhhccC-C-ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 117 IPSSVNEDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 117 lp~~~te~~L~~~f~~~-G-~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
++..++..+|++.+++. + +|..|..+..+ .+ .--|+|++....+|.....+
T Consensus 30 Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 45567888998888764 3 45566665543 12 23599999887777665544
No 450
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=23.37 E-value=1.4e+02 Score=18.45 Aligned_cols=54 Identities=9% Similarity=0.200 Sum_probs=37.5
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHh
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 170 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~----~~~a~~Al~~ 170 (367)
++.|.++.-......|++.+.+.-.|..+.+... ...+.|+|+. .+...++++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4677777666667788888888877887777543 2367888863 4556666665
No 451
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.15 E-value=1.1e+02 Score=24.87 Aligned_cols=54 Identities=6% Similarity=0.037 Sum_probs=34.8
Q ss_pred ceEeccCCCCC-C----chhhHHHHHHhh--ccCCCccEEEEeeCCCCCCcceEEEEEeCCHHH
Q 017735 19 TQKMTGLSLTP-V----TEPALAQFIKHF--GKYGEITDSVIMKDRKTGQPRGFGFVTYADPSV 75 (367)
Q Consensus 19 ~~~v~~L~~~~-~----~~~t~~~l~~~F--~~~G~i~~~~i~~~~~tg~srG~afV~f~~~~~ 75 (367)
++.|.|++... . .-.+.++|++.| +.|.++. |+.+..+. -..++|.|+|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChH
Confidence 45566666411 0 124557888866 8887765 56666543 478899999987554
No 452
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=22.71 E-value=2.2e+02 Score=21.33 Aligned_cols=56 Identities=5% Similarity=0.096 Sum_probs=33.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhc------cCCceeEEEEeeCCCC----CCcccE--E-EEEeCCHHHHHH
Q 017735 111 KIFVGGIPSSVNEDEFKDFFM------QFGDVQEHQIMRDHST----SRSRGF--G-FITFDTEQAVDD 166 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~------~~G~v~~v~i~~~~~~----g~~~G~--a-fV~F~~~~~a~~ 166 (367)
-|.+-.|...+++++++++.+ +.-.|+.+.+-.+..+ ...++| + +++|++.++.+.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~ 91 (120)
T 3bn7_A 23 HQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKR 91 (120)
T ss_dssp EEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHH
Confidence 344445666777766544432 4556777777666443 224444 4 468999887754
No 453
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=22.62 E-value=2.5e+02 Score=21.09 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=31.8
Q ss_pred EEEeCCCCCCCHHHHHHhh-------ccCCceeEEEEeeCCCCCCcccEE-EEEeCCHHHHHH
Q 017735 112 IFVGGIPSSVNEDEFKDFF-------MQFGDVQEHQIMRDHSTSRSRGFG-FITFDTEQAVDD 166 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f-------~~~G~v~~v~i~~~~~~g~~~G~a-fV~F~~~~~a~~ 166 (367)
|.+-.|...+++++++++. .+.-.|+.+.+-.+......--++ +++|+|.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 3334556666665544443 356678888877764331112234 468999888765
No 454
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=22.39 E-value=2.1e+02 Score=20.18 Aligned_cols=71 Identities=6% Similarity=0.073 Sum_probs=44.6
Q ss_pred ceEEEEEeCCHHHHHHHHhhccccCCeEEEEeeccCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCCceeEEEEe
Q 017735 63 RGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIM 142 (367)
Q Consensus 63 rG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~ 142 (367)
.-.-|++|.++.+.+..++.+.++ -.+||..-++..|-|..|.-.
T Consensus 11 lnslfmdftsenelelflksldev-----------------------------------wsedlysrlsaaglirhvisk 55 (117)
T 2op5_A 11 LNSLFMDFTSENELELFLKSLDEV-----------------------------------WSEDLYSRLSAAGLIRHVISK 55 (117)
T ss_dssp EEEEEEECSSHHHHHHHHTTHHHH-----------------------------------SCHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHhcccchHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHhhHHHHHHHH
Confidence 345688899888888877754322 125666666777766655333
Q ss_pred eCCCCCCcccEEEEEeCCHHHHHHHHH
Q 017735 143 RDHSTSRSRGFGFITFDTEQAVDDLLA 169 (367)
Q Consensus 143 ~~~~~g~~~G~afV~F~~~~~a~~Al~ 169 (367)
. ....+.+-.-..+|++.+..++|.+
T Consensus 56 v-wnkeqhrismvfeydskegyqkcqe 81 (117)
T 2op5_A 56 V-WNKEQHRISMVFEYDSKEGYQKCQE 81 (117)
T ss_dssp E-CCTTCCEEEEEEEESCHHHHHHHHH
T ss_pred H-hhhhhceeEEEEEeccHhhHHHHHH
Confidence 2 2334445455668999887777654
No 455
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=22.04 E-value=1.8e+02 Score=19.34 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=40.4
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeC----CHHHHHHHHHhc
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 171 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~----~~~~a~~Al~~l 171 (367)
..+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|+ +.+.+.++|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346778888777677788898888878888777543 236888885 345666777664
No 456
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=21.66 E-value=1.2e+02 Score=21.75 Aligned_cols=52 Identities=6% Similarity=0.096 Sum_probs=33.1
Q ss_pred EEEeCCCCCCCHHHHHHhhc-cCC----ceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 112 IFVGGIPSSVNEDEFKDFFM-QFG----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 112 l~V~~lp~~~te~~L~~~f~-~~G----~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
|.+-.+|.+++-++|.+.+. .|. ..-.++...+ .+ -+|++.+-++.+.|+..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRL 73 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHH
Confidence 55666678888888865553 222 2223333322 22 36899999999999984
No 457
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=21.62 E-value=1.6e+02 Score=18.40 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=36.8
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC---HHHHHHHHHh
Q 017735 111 KIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAK 170 (367)
Q Consensus 111 ~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~---~~~a~~Al~~ 170 (367)
++.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|+. .+.+.++++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4667777665566778888888777888777644 2367788864 4556666665
No 458
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=21.54 E-value=1.8e+02 Score=27.80 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=32.4
Q ss_pred ccceEeccCCCCCCchhhHHHHHHhhccCCCccEEEEeeCCCCCCcceEE-EEEeCCHHHHHHHHh
Q 017735 17 TTTQKMTGLSLTPVTEPALAQFIKHFGKYGEITDSVIMKDRKTGQPRGFG-FVTYADPSVVDKVIE 81 (367)
Q Consensus 17 ~~~~~v~~L~~~~~~~~t~~~l~~~F~~~G~i~~~~i~~~~~tg~srG~a-fV~f~~~~~a~~al~ 81 (367)
..++.|..||+...++.-.+.|.++... ..|..|.-++|.++.+ .+.- .|++.....++..++
T Consensus 236 ~~~ivItElPy~v~~~~lie~i~~l~~~-kki~~I~d~rDe~sd~-~gvrivI~lk~~~~~~~~l~ 299 (470)
T 3ilw_A 236 RTSLVITELPYQVNHDNFITSIAEQVRD-GKLAGISNIEDQSSDR-VGLRIVIEIKRDAVAKVVIN 299 (470)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHT-TSCTTEEEEEECCBTT-TBCCEEEEECTTSCHHHHHH
T ss_pred CCEEEEEeCCCccCHHHHHHHHHHHHhc-CCCCccccccccCCCC-CceEEEEEECCCCCHHHHHH
Confidence 4468899999955444444455555432 3454455555552211 2333 345554444444444
No 459
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=21.46 E-value=1.5e+02 Score=24.59 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=32.0
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccC------CceeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 017735 109 TKKIFVGGIPSSVNEDEFKDFFMQF------GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 170 (367)
Q Consensus 109 ~~~l~V~~lp~~~te~~L~~~f~~~------G~v~~v~i~~~~~~g~~~G~afV~F~~~~~a~~Al~~ 170 (367)
+.-+||.=. ...+++++.++...+ +.|..-+++.+. .-+++.|.+-..|..|..-
T Consensus 75 ~lMmFV~v~-g~~Se~Ete~it~lWQtsL~NnhI~~qry~Id~------dr~iFm~~DGs~a~E~KdF 135 (195)
T 2kgl_A 75 TLMMFVTVS-GNPTEKETEEITSLWQGSLFNANYDVQRFIVGS------DRAIFMLRDGSYAWEIKDF 135 (195)
T ss_dssp CCEEEEESS-SCSCHHHHHHHHHHHHHHGGGSCCEEEEEEETT------EEEEEEESCSHHHHHHHHH
T ss_pred ceEEEEEeC-CCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecC------CeEEEEeCchHHHHHHHHH
Confidence 445677633 356777666555321 223333333332 2589999998888877654
No 460
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=20.77 E-value=3.6e+02 Score=22.30 Aligned_cols=136 Identities=10% Similarity=0.177 Sum_probs=66.3
Q ss_pred cceEeccCCCCCCchhhHHHHHHhhccCC-CccEEEEeeCCCCCCcceEEEEEeCCHHHHHHHHhhccccCCeEEEEeec
Q 017735 18 TTQKMTGLSLTPVTEPALAQFIKHFGKYG-EITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 96 (367)
Q Consensus 18 ~~~~v~~L~~~~~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~tg~srG~afV~f~~~~~a~~al~~~~~i~g~~i~v~~~ 96 (367)
-++++.|-|- .++.|..+|+..+ +|.++.+......+.++ +.++.-.+.+.+++..+.++++-. -++|...
T Consensus 32 LsVlVeN~pG------vLaRItglfsrRG~NI~SLtV~~ted~gisR-itIvV~g~e~~ieqL~kQL~KLid-VikV~dl 103 (193)
T 2fgc_A 32 VSMLVHNKPG------VMRKVANLFARRGFNISSITVGESETPGLSR-LVIMVKGDDKTIEQIEKQAYKLVE-VVKVTPI 103 (193)
T ss_dssp EEEEEECCTT------HHHHHHHHHHTTTCEEEEEEEEECSSTTEEE-EEEEEEECTTHHHHHHHHHTTSTT-EEEEEEC
T ss_pred EEEEECCCCh------HHHHHHHHHHHCCceEEEEEeeccCCCCEEE-EEEEEECCHHHHHHHHHHhcCcCc-eEEEEEe
Confidence 3444555443 6778889998877 67777776544333333 455554454445544444432211 1223222
Q ss_pred cCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHhhccCC-ceeEEEEeeCCCCCCcccEEEEEeC-CHHHHHHHHHhcCCc
Q 017735 97 IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKGNKL 174 (367)
Q Consensus 97 ~~~~~~~~~~~~~~~l~V~~lp~~~te~~L~~~f~~~G-~v~~v~i~~~~~~g~~~G~afV~F~-~~~~a~~Al~~l~g~ 174 (367)
... ....-.+.|.+-.+..+....+|.++.+.|. .|.+ +-.+ +-.||.. +++..++.++.|..+
T Consensus 104 ~~~----~~~~v~REl~LiKV~~~~~r~ei~~i~~~fra~ivD--v~~~--------s~~iE~tG~~~ki~a~i~~l~~~ 169 (193)
T 2fgc_A 104 DPL----PENRVEREMALIKVRFDEDKQEIFQLVEIFRGKIID--VSRE--------GAIIEITGARSKVEAFINLLPQK 169 (193)
T ss_dssp CSS----GGGEEEEEEEEEEEECSSCHHHHHHHHHHTTCEEEE--ECSS--------EEEEEEEECHHHHHHHHHHSCGG
T ss_pred cCC----CCccceeEEEEEEEeCCcCHHHHHHHHHHcCCEEEE--EcCC--------EEEEEEcCCHHHHHHHHHHhhhh
Confidence 110 0000112222211211111778887777663 3333 3222 4455554 677777778877654
Q ss_pred c
Q 017735 175 E 175 (367)
Q Consensus 175 ~ 175 (367)
-
T Consensus 170 g 170 (193)
T 2fgc_A 170 Q 170 (193)
T ss_dssp G
T ss_pred C
Confidence 4
No 461
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=20.47 E-value=2.1e+02 Score=24.85 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=15.0
Q ss_pred EEEEEeCCHHHHHHHHhhcc
Q 017735 65 FGFVTYADPSVVDKVIEDTH 84 (367)
Q Consensus 65 ~afV~f~~~~~a~~al~~~~ 84 (367)
-.+..|.+.++|+++++++.
T Consensus 43 ~V~~~F~s~~dA~~~L~~lk 62 (252)
T 4ev1_A 43 SITGAYMSRQEAQAFINELR 62 (252)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEEecHHHHHHHHHHHH
Confidence 35667788999999988443
No 462
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=20.19 E-value=1.2e+02 Score=19.68 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=36.6
Q ss_pred ceEEEeCCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCCcccEEEEEeCC----HHHHHHHHHhc
Q 017735 110 KKIFVGGIPSSVNEDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 171 (367)
Q Consensus 110 ~~l~V~~lp~~~te~~L~~~f~~~G~v~~v~i~~~~~~g~~~G~afV~F~~----~~~a~~Al~~l 171 (367)
.+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|.. .+.+.++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35667777666666778888888777776655332 3367888863 45666667654
Done!