BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017736
(367 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 293 bits (750), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 175/365 (47%), Positives = 225/365 (61%), Gaps = 41/365 (11%)
Query: 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
V KVKRET+ ACMTCPLC+ LLR+ATTIS CLHTFCRKCIYEK++++E + CPVC+IDLG
Sbjct: 6 VAKVKRETVVACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDIDLG 65
Query: 71 CLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQ 130
P+EKLRPDH LQD+RAK+FP KR+K +APEV+ SISLPAKRKERS+SSLVVSTP+V
Sbjct: 66 GTPLEKLRPDHILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPRVSA 125
Query: 131 HTGLTGKRTKGSTRKAAALRGCGFMLE---DKKESSIEDHPMSSSSPDSLNKNAQNRRQE 187
G TGKRTK +TRK +RG G + K+E +DH S+SSP++L K QN+RQ
Sbjct: 126 QAGTTGKRTKAATRK--DVRGSGSFTKRTVKKEEEFGDDHVESASSPETLKKFTQNKRQS 183
Query: 188 SYKAEPS---SEQGPNKVGEITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLH 244
SY A P+ S + V E ++K LW PLN LV+ AN TK KS
Sbjct: 184 SY-ANPNQSLSNRRNKDVDEPWDSKLHLWKPLNFLVDVANGTKDPKS------------- 229
Query: 245 NFPDSEVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIGLHPGPMKRRR 304
EL N+ ++ SKTK K+H K K + + + G P +
Sbjct: 230 ----------------ELGNASHNDVQGSKTKTKDHKRKCKLEEEISNNG-DPTTSETAT 272
Query: 305 RAAAKKREVGTEESCAAAQAML--DAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTC 362
++ + ++ L AA K +RRN +WFSLVAS +Q+G+ SLPQI
Sbjct: 273 LKRTRRTRRKRSSTFGDSRIPLLPGAASLKQERRNGHVWFSLVASSNQEGEASLPQIPAN 332
Query: 363 YLRIK 367
YLRI+
Sbjct: 333 YLRIR 337
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1
PE=1 SV=2
Length = 421
Score = 270 bits (690), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 171/362 (47%), Positives = 220/362 (60%), Gaps = 30/362 (8%)
Query: 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
++KVK+ET+ AC++C +C+++LR+ATTIS CLHTFCRKCIYEK++++E + CPVCNIDLG
Sbjct: 2 MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61
Query: 71 CLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQ 130
P+EKLRPDHNLQD+RAKIF KRRKV+AP + +SLP KRKERS+SSLVVSTP V
Sbjct: 62 STPLEKLRPDHNLQDLRAKIFALKRRKVKAPGI---VSLPGKRKERSISSLVVSTPMVSA 118
Query: 131 HTGLTGKRTKGSTRKAAALRGCGFMLEDKKESSIEDHPMSSSSPDSLNKNAQNRRQESYK 190
G T +RTK TRK K+ESS ++ S+SSPD+LNK QN+RQ
Sbjct: 119 QAGTTRRRTKAPTRKELRNGSLAERTVKKEESSGDELLESTSSPDTLNKFTQNKRQSKKS 178
Query: 191 AEPSSEQGPNKVG-EITEAKADLWTPLNCLVEAANRTKSSKSNSQGPSLAKTDLHNFPDS 249
+ S NK G E ++K D W PLN LVE AN TK KS++ S +K+
Sbjct: 179 CKESISNKENKDGDEPWDSKMD-WKPLNFLVEVANGTKPLKSSASQGSGSKS-------- 229
Query: 250 EVFMPETKVKVELPNSPGGEICSSKTKMKEHGLKTKYQNDKNGIG---LHPGPMKRRRRA 306
E N + SKTK K K K ++DK+ G +R R
Sbjct: 230 -----------EHANVSRNQFQGSKTKTKNKKRKCKREDDKSNNGDPTTSETVTPKRMRT 278
Query: 307 AAKKREVGT-EESCAAAQAMLDAAGAKYKRRNTPIWFSLVASEDQKGDGSLPQISTCYLR 365
+KR T +S Q D + AK +RRN P+WFSLVAS DQ+G SLPQI +LR
Sbjct: 279 TQRKRSATTLGDSRNLPQP--DESSAKQERRNGPVWFSLVASNDQEGGTSLPQIPANFLR 336
Query: 366 IK 367
I+
Sbjct: 337 IR 338
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis
thaliana GN=At3g23060 PE=2 SV=1
Length = 480
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
+ KV + ++ C+ CP+C + ++ATTIS CLHTFCR CI K +E + CPVCN++LG
Sbjct: 2 LTKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLG 61
Query: 71 CLPVEKLRPDHNLQDIRAKIF 91
P+EKLR D QD++ KI+
Sbjct: 62 VFPLEKLRSDCTWQDLKLKIY 82
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 335 RRNTPIWFSLVASEDQKGDGSLPQISTCYLRIK 367
R N P+WFSL S+ Q + LP I+ C +R+K
Sbjct: 360 RNNNPVWFSLKPSKTQNIEMLLPPITACCIRVK 392
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis
GN=pcgf3 PE=2 SV=1
Length = 242
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
K+K + A +TC LCN L +ATT++ CLHTFCR C+ + L EE + CP C I +
Sbjct: 5 KIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P++ + D +QDI K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
MD +R VVKVK + L + C LC +ATTI+ CLHTFC+ CI + L + +
Sbjct: 23 MDPLRN--EEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYL--QTSK 78
Query: 61 CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
CP+CNI + P+ L+ D +QDI K+ P
Sbjct: 79 YCPLCNIKIHETQPLLNLKLDRVMQDIVYKLVP 111
>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1
PE=2 SV=1
Length = 259
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
MD +R VVKVK + L + C LC +ATTI+ CLHTFC+ CI + L + +
Sbjct: 23 MDPLRNEE--VVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYL--QTSK 78
Query: 61 CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
CP+CNI + P+ L+ D +QDI K+ P
Sbjct: 79 YCPLCNIKIHETQPLLNLKLDRVMQDIVYKLVP 111
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3
PE=2 SV=1
Length = 241
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
K+K + A +TC LC+ L +ATT++ CLHTFCR C+ + L EE + CP C I +
Sbjct: 5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P++ + D +QDI K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3
PE=1 SV=1
Length = 242
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
K+K + A +TC LC+ L +ATT++ CLHTFCR C+ + L EE + CP C I +
Sbjct: 5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P++ + D +QDI K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
K+K + A +TC LC+ L +ATT++ CLHTFCR C+ + L EE + CP C I +
Sbjct: 5 KIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL--EENNTCPTCRIVIHQS 62
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P++ + D +QDI K+ P
Sbjct: 63 HPLQYIGHDRTMQDIVYKLVP 83
>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3
SV=1
Length = 261
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG- 70
VK+K + L + C LC +ATTI+ CLHTFC+ CI + L + + CP+CNI +
Sbjct: 32 VKIKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYL--QTSKYCPMCNIKIHE 89
Query: 71 CLPVEKLRPDHNLQDIRAKIFP 92
P+ L+ D +QDI K+ P
Sbjct: 90 TQPLLNLKLDRVMQDIVYKLVP 111
>sp|Q8R023|PCGF1_MOUSE Polycomb group RING finger protein 1 OS=Mus musculus GN=Pcgf1 PE=2
SV=2
Length = 259
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
MD +R V+VK + L + C LC +ATTI+ CLHTFC+ CI + L + +
Sbjct: 25 MDPLRNEEE--VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYL--QTSK 80
Query: 61 CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
CP+CNI + P+ L+ D +QDI K+ P
Sbjct: 81 YCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVP 113
>sp|Q9BSM1|PCGF1_HUMAN Polycomb group RING finger protein 1 OS=Homo sapiens GN=PCGF1 PE=1
SV=2
Length = 259
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
MD +R V+VK + L + C LC +ATTI+ CLHTFC+ CI + L + +
Sbjct: 25 MDPLRNEEE--VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYL--QTSK 80
Query: 61 CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
CP+CNI + P+ L+ D +QDI K+ P
Sbjct: 81 YCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVP 113
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVP 84
>sp|Q6DLV9|PCGF1_RAT Polycomb group RING finger protein 1 (Fragment) OS=Rattus
norvegicus GN=Pcgf1 PE=2 SV=1
Length = 243
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
MD +R V+VK + L + C LC +ATTI+ CLHTFC+ CI + L + +
Sbjct: 13 MDPLRNEEE--VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYL--QTSK 68
Query: 61 CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
CP+CNI + P+ L+ D +QDI K+ P
Sbjct: 69 YCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVP 101
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVP 84
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVP 84
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVP 84
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVP 84
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRSDKTLQDIVYKLVP 84
>sp|Q7T3E6|BMI1B_DANRE Polycomb complex protein BMI-1-B OS=Danio rerio GN=bmi1b PE=2
SV=1
Length = 324
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIVECLHSFCKMCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 KPLLNIRSDKTLQDIVYKLVP 84
>sp|Q91648|BMI1A_XENLA Polycomb complex protein BMI-1-A OS=Xenopus laevis GN=bmi1a PE=1
SV=1
Length = 326
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRADKTLQDIVYKLVP 84
>sp|Q8JIR0|BMI1A_DANRE Polycomb complex protein BMI-1-A OS=Danio rerio GN=bmi1a PE=1
SV=2
Length = 320
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKMCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 KPLLNIRSDKTLQDIVYKLVP 84
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2
PE=1 SV=1
Length = 344
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70
++K L + C LC +ATTI CLH+FC+ CI L E CP+C++ +
Sbjct: 4 TTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYL--ETNKYCPMCDVQVH 61
Query: 71 -CLPVEKLRPDHNLQDIRAKIFP------FKRRK 97
P+ +R D LQDI K+ P KRR+
Sbjct: 62 KTRPLLSIRSDKTLQDIVYKLVPGLFKDEMKRRR 95
>sp|Q2YDF9|PCGF1_BOVIN Polycomb group RING finger protein 1 OS=Bos taurus GN=PCGF1 PE=2
SV=2
Length = 259
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEAD 60
MD +R V+VK + L + C LC +ATTI+ CLHTFC+ CI + L + +
Sbjct: 25 MDPLRNEEE--VRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYL--QTSK 80
Query: 61 CCPVCNIDLG-CLPVEKLRPDHNLQDIRAKIFP 92
CP+CNI + P+ + D +QDI K+ P
Sbjct: 81 YCPMCNIKIHETQPLLNHKLDRVMQDIVYKLVP 113
>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2
SV=1
Length = 323
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +A TI CLH+FC+ CI L E + CP+C++ +
Sbjct: 6 RIKITELNPHLMCVLCGGYFIDAATIIECLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
P+ +R D LQDI K+ P
Sbjct: 64 RPLLNIRADKTLQDIVYKLVP 84
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2
PE=1 SV=2
Length = 342
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-C 71
++K L + C LC +ATTI CLH+FC+ CI L E CP+C++ +
Sbjct: 6 RIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYL--ETNKYCPMCDVQVHKT 63
Query: 72 LPVEKLRPDHNLQDIRAKIFP------FKRRK 97
P+ +R D LQDI K+ P KRR+
Sbjct: 64 RPLLSIRSDKTLQDIVYKLVPGLFKDEMKRRR 95
>sp|Q1JPS1|PCF5B_DANRE Polycomb group RING finger protein 5-B OS=Danio rerio GN=pcgf5b
PE=2 SV=1
Length = 232
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-CLPVEKLRPDH 81
+TC +C L + TT++ CLHTFC+ CI + E+++ CP C I + P+E LR D+
Sbjct: 16 ITCFVCKGYLIKPTTVTECLHTFCKSCIVQHF--EDSNDCPKCGIQVHETNPLEMLRLDN 73
Query: 82 NLQDIRAKIFPFKRRKVQAPE 102
L+++ K+ P R K Q E
Sbjct: 74 TLEEVIFKLVPGLREKEQQQE 94
>sp|Q5XI70|PCGF6_RAT Polycomb group RING finger protein 6 OS=Rattus norvegicus GN=Pcgf6
PE=2 SV=1
Length = 351
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-CLPVEKLRPDH 81
+ C +C L +ATTI+ CLHTFC+ CI ++ CP CNI + P+ +R D
Sbjct: 133 ILCSICKGYLIDATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQTQPLYNIRLDR 190
Query: 82 NLQDIRAKIFPF--KRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRT 139
LQDI K+ +R K Q + KER L V P VPQ + RT
Sbjct: 191 QLQDIVYKLVVNLEEREKKQMHDFY---------KERGLE---VPKPAVPQPVPASKGRT 238
Query: 140 K 140
K
Sbjct: 239 K 239
>sp|B3DK16|PCF5A_DANRE Polycomb group RING finger protein 5-A OS=Danio rerio GN=pcgf5a
PE=2 SV=1
Length = 234
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-CLPVEKLRPDH 81
+TC +C L + T ++ CLHTFC+ CI + EE++ CP C I + P+E LR D
Sbjct: 16 ITCSICRGYLIKPTAVTECLHTFCKSCIVQHF--EESNECPECGIQVHETNPLEMLRLDK 73
Query: 82 NLQDIRAKIFPFKRRKVQAPE 102
L++I K+ P R K + E
Sbjct: 74 TLEEIIFKLVPGLREKEEHQE 94
>sp|A0JN86|PCGF5_BOVIN Polycomb group RING finger protein 5 OS=Bos taurus GN=PCGF5 PE=2
SV=1
Length = 255
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 6 TTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
T +H+VK +TC +C L + TT++ CLHTFC+ CI + E+++ CP C
Sbjct: 3 TQRKHLVK----DFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHF--EDSNDCPRC 56
Query: 66 NIDLG-CLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVS 124
+ P+E LR D+ L++I K+ P R +++ + P + + +S V
Sbjct: 57 GNQVHETNPLEMLRLDNTLEEIIFKLVPGLREQLERESEFWKKNKPQENGQDDMSK--VD 114
Query: 125 TPKVPQ 130
PKV +
Sbjct: 115 KPKVDE 120
>sp|Q99NA9|PCGF6_MOUSE Polycomb group RING finger protein 6 OS=Mus musculus GN=Pcgf6 PE=1
SV=1
Length = 353
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-CLPVEKLRPDH 81
+ C +C L +ATTI+ CLHTFC+ CI ++ CP CNI + P+ +R D
Sbjct: 135 ILCSICKGYLIDATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQTQPLYNIRLDR 192
Query: 82 NLQDIRAKI 90
LQDI K+
Sbjct: 193 QLQDIVYKL 201
>sp|Q9BYE7|PCGF6_HUMAN Polycomb group RING finger protein 6 OS=Homo sapiens GN=PCGF6 PE=1
SV=2
Length = 350
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG-CLPVEKLRPDH 81
+ C +C L +ATTI+ CLHTFC+ CI ++ CP CNI + P+ +R D
Sbjct: 132 ILCSICKGYLIDATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQTQPLYNIRLDR 189
Query: 82 NLQDIRAKI 90
LQDI K+
Sbjct: 190 QLQDIVYKL 198
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 91
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 92 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 141
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 91
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 92 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 141
>sp|Q3UK78|PCGF5_MOUSE Polycomb group RING finger protein 5 OS=Mus musculus GN=Pcgf5
PE=2 SV=1
Length = 256
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 6 TTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
T +H+VK +TC +C L + TT++ CLHTFC+ CI + E+++ CP C
Sbjct: 3 TQRKHLVK----DFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHF--EDSNDCPRC 56
Query: 66 NIDLG-CLPVEKLRPDHNLQDIRAKIFPFKRRK 97
+ P+E LR D+ L++I K+ P R +
Sbjct: 57 GNQVHETNPLEMLRLDNTLEEIIFKLVPGLREQ 89
>sp|Q86SE9|PCGF5_HUMAN Polycomb group RING finger protein 5 OS=Homo sapiens GN=PCGF5
PE=1 SV=1
Length = 256
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 6 TTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65
T +H+VK +TC +C L + TT++ CLHTFC+ CI + E+++ CP C
Sbjct: 3 TQRKHLVK----DFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHF--EDSNDCPRC 56
Query: 66 NIDLG-CLPVEKLRPDHNLQDIRAKIFPFKRRK 97
+ P+E LR D+ L++I K+ P R +
Sbjct: 57 GNQVHETNPLEMLRLDNTLEEIIFKLVPGLREQ 89
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 91
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 92 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 141
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 91
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 92 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 141
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 112
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 112
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 112
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 62
Query: 72 LPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSLSSLV 122
+ LRPD N + +KI+P R + +A + I L +++LSS +
Sbjct: 63 VSKRSLRPDPNFDALISKIYP-SREEYEAHQDRVLIRLSRLHNQQALSSSI 112
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 34 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 90
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
+ LRPD N + +KI+P
Sbjct: 91 VSKRSLRPDPNFDALISKIYP 111
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKE-CPTCRKKL-- 91
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
+ LRPD N + +KI+P
Sbjct: 92 VSKRSLRPDPNFDALISKIYP 112
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 38 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 94
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
+ LRPD N + +KI+P
Sbjct: 95 VSKRSLRPDPNFDALISKIYP 115
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 94
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
+ LRPD N + +KI+P
Sbjct: 95 VSKRSLRPDPNFDALISKIYP 115
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 94
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
+ LRPD N + +KI+P
Sbjct: 95 VSKRSLRPDPNFDALISKIYP 115
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 94
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
+ LRPD N + +KI+P
Sbjct: 95 VSKRSLRPDPNFDALISKIYP 115
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71
+ V +L + + CP+C +L+ T CLH FC CI L + CP C L
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL-- 94
Query: 72 LPVEKLRPDHNLQDIRAKIFP 92
+ LRPD N + +KI+P
Sbjct: 95 VSKRSLRPDPNFDALISKIYP 115
>sp|Q5D7H8|TRIM5_CALDO Tripartite motif-containing protein 5 OS=Callicebus donacophilus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 8 ARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIY----EKLSDEEADCCP 63
+R +V +K E +TCP+C LL E ++ C H+FC+ CI E + CP
Sbjct: 3 SRILVNIKEE-----VTCPICLELLTEPLSLD-CGHSFCQACITANHKESTLHQGERSCP 56
Query: 64 VCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKVQAPEVMPSISLPAKRKERSL 118
+C I P E LRP+ +L +I ++ R V +PE + L A+ E+ L
Sbjct: 57 LCRIS---YPSENLRPNRHLANIVERL----REVVLSPEEGQKVDLCARHGEKLL 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,021,102
Number of Sequences: 539616
Number of extensions: 5426097
Number of successful extensions: 12797
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 347
Number of HSP's that attempted gapping in prelim test: 12511
Number of HSP's gapped (non-prelim): 543
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)