Query 017736
Match_columns 367
No_of_seqs 254 out of 1391
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2660 Locus-specific chromos 99.5 1.6E-15 3.4E-20 147.8 2.3 168 12-224 5-173 (331)
2 smart00504 Ubox Modified RING 99.2 1.5E-11 3.2E-16 92.5 4.4 62 22-89 1-62 (63)
3 PF15227 zf-C3HC4_4: zinc fing 99.2 9.8E-12 2.1E-16 88.0 2.8 40 25-65 1-42 (42)
4 TIGR00599 rad18 DNA repair pro 99.1 3.4E-11 7.4E-16 121.8 5.2 72 15-92 19-90 (397)
5 PF04564 U-box: U-box domain; 99.1 6.1E-11 1.3E-15 93.1 3.8 68 20-92 2-69 (73)
6 KOG0287 Postreplication repair 99.1 2.6E-11 5.7E-16 118.8 1.8 73 14-92 15-87 (442)
7 PF14835 zf-RING_6: zf-RING of 99.0 6.4E-11 1.4E-15 90.8 1.8 64 17-87 2-65 (65)
8 KOG0311 Predicted E3 ubiquitin 99.0 7.7E-11 1.7E-15 116.1 0.5 87 11-100 32-118 (381)
9 PLN03208 E3 ubiquitin-protein 98.9 4.5E-10 9.7E-15 103.4 2.9 53 16-69 12-78 (193)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.2E-09 2.6E-14 75.5 2.4 39 25-65 1-39 (39)
11 COG5432 RAD18 RING-finger-cont 98.8 1.1E-09 2.5E-14 105.6 2.7 71 16-92 19-89 (391)
12 PF00097 zf-C3HC4: Zinc finger 98.8 1.9E-09 4.1E-14 74.8 2.6 41 25-65 1-41 (41)
13 KOG2177 Predicted E3 ubiquitin 98.8 3.6E-09 7.9E-14 97.4 4.1 70 15-92 6-75 (386)
14 KOG0823 Predicted E3 ubiquitin 98.8 2.1E-09 4.6E-14 100.9 2.2 49 20-69 45-94 (230)
15 cd00162 RING RING-finger (Real 98.6 2.3E-08 5.1E-13 68.6 3.0 44 24-68 1-44 (45)
16 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.6E-08 5.6E-13 72.4 2.7 46 21-69 1-47 (50)
17 PF13639 zf-RING_2: Ring finge 98.6 1.9E-08 4.1E-13 71.2 1.5 41 24-66 2-44 (44)
18 PHA02929 N1R/p28-like protein; 98.6 3.4E-08 7.4E-13 94.1 3.4 48 20-69 172-226 (238)
19 KOG0317 Predicted E3 ubiquitin 98.6 2.9E-08 6.2E-13 95.9 2.9 48 19-69 236-283 (293)
20 PF13445 zf-RING_UBOX: RING-ty 98.5 3.5E-08 7.5E-13 70.4 1.9 37 25-63 1-43 (43)
21 KOG0320 Predicted E3 ubiquitin 98.5 5.1E-08 1.1E-12 88.5 2.4 52 15-69 124-177 (187)
22 PF14634 zf-RING_5: zinc-RING 98.4 2.3E-07 5E-12 65.9 2.5 42 24-67 1-44 (44)
23 smart00184 RING Ring finger. E 98.4 2.3E-07 5.1E-12 61.3 2.4 39 25-65 1-39 (39)
24 KOG2164 Predicted E3 ubiquitin 98.3 2.2E-07 4.8E-12 95.8 2.5 48 22-70 186-236 (513)
25 PHA02926 zinc finger-like prot 98.3 3E-07 6.4E-12 86.4 3.1 52 18-69 166-229 (242)
26 COG5222 Uncharacterized conser 98.3 6.6E-07 1.4E-11 87.0 4.8 67 23-92 275-341 (427)
27 TIGR00570 cdk7 CDK-activating 98.2 1.3E-06 2.8E-11 86.0 5.1 48 21-69 2-53 (309)
28 KOG4159 Predicted E3 ubiquitin 98.2 7.7E-07 1.7E-11 90.5 3.3 129 15-146 77-208 (398)
29 COG5574 PEX10 RING-finger-cont 98.2 6E-07 1.3E-11 86.0 2.0 49 20-69 213-261 (271)
30 KOG1002 Nucleotide excision re 98.2 5.2E-08 1.1E-12 100.4 -6.2 130 20-152 534-671 (791)
31 PF11789 zf-Nse: Zinc-finger o 98.1 1.5E-06 3.2E-11 65.6 2.3 45 20-64 9-53 (57)
32 KOG0978 E3 ubiquitin ligase in 98.0 2.5E-06 5.5E-11 91.5 2.1 55 15-71 636-690 (698)
33 PF12678 zf-rbx1: RING-H2 zinc 97.9 4.9E-06 1.1E-10 65.5 1.8 41 24-66 21-73 (73)
34 COG5152 Uncharacterized conser 97.7 1.4E-05 3E-10 74.1 2.1 59 23-88 197-255 (259)
35 KOG0297 TNF receptor-associate 97.7 2E-05 4.4E-10 80.3 3.3 73 14-90 13-85 (391)
36 KOG2879 Predicted E3 ubiquitin 97.7 2.2E-05 4.8E-10 75.8 2.5 54 16-69 233-286 (298)
37 KOG0824 Predicted E3 ubiquitin 97.6 3.1E-05 6.8E-10 75.6 2.4 45 23-69 8-52 (324)
38 KOG0802 E3 ubiquitin ligase [P 97.5 4.7E-05 1E-09 80.5 1.7 48 19-69 288-340 (543)
39 KOG4628 Predicted E3 ubiquitin 97.4 6.9E-05 1.5E-09 75.0 2.6 46 23-69 230-277 (348)
40 KOG1813 Predicted E3 ubiquitin 97.4 7E-05 1.5E-09 73.1 2.2 44 23-69 242-285 (313)
41 PF12861 zf-Apc11: Anaphase-pr 97.1 0.00031 6.6E-09 57.2 2.6 51 19-69 18-81 (85)
42 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00041 9E-09 69.7 3.5 48 19-69 284-344 (491)
43 KOG1039 Predicted E3 ubiquitin 96.9 0.00044 9.6E-09 69.4 2.0 50 20-69 159-220 (344)
44 COG5540 RING-finger-containing 96.9 0.00051 1.1E-08 67.4 2.2 46 23-69 324-371 (374)
45 KOG4367 Predicted Zn-finger pr 96.3 0.0017 3.7E-08 66.5 1.7 37 19-56 1-37 (699)
46 KOG4172 Predicted E3 ubiquitin 96.0 0.0023 5E-08 48.0 0.6 45 23-69 8-53 (62)
47 KOG0804 Cytoplasmic Zn-finger 95.8 0.0029 6.3E-08 65.0 0.8 47 18-68 171-220 (493)
48 KOG4185 Predicted E3 ubiquitin 95.8 0.0068 1.5E-07 58.9 3.1 67 22-90 3-77 (296)
49 KOG1785 Tyrosine kinase negati 95.7 0.0043 9.4E-08 63.0 1.4 45 24-69 371-415 (563)
50 KOG0827 Predicted E3 ubiquitin 95.7 0.003 6.6E-08 63.9 0.1 47 24-70 6-56 (465)
51 KOG0825 PHD Zn-finger protein 95.7 0.0035 7.5E-08 68.1 0.5 47 22-70 123-171 (1134)
52 PF04641 Rtf2: Rtf2 RING-finge 95.7 0.0079 1.7E-07 58.1 2.9 49 19-70 110-161 (260)
53 KOG1001 Helicase-like transcri 95.6 0.0041 8.9E-08 67.6 0.9 45 23-69 455-499 (674)
54 COG5219 Uncharacterized conser 95.6 0.0056 1.2E-07 67.7 1.9 53 17-69 1464-1522(1525)
55 KOG3039 Uncharacterized conser 95.5 0.0091 2E-07 57.4 2.5 47 21-69 220-269 (303)
56 KOG4265 Predicted E3 ubiquitin 95.1 0.011 2.4E-07 59.3 1.9 47 20-69 288-335 (349)
57 KOG4739 Uncharacterized protei 95.1 0.0078 1.7E-07 57.4 0.8 61 23-92 4-65 (233)
58 KOG1645 RING-finger-containing 95.0 0.01 2.2E-07 60.5 1.6 47 21-67 3-53 (463)
59 PF05290 Baculo_IE-1: Baculovi 95.0 0.018 3.9E-07 50.6 2.7 65 3-69 61-131 (140)
60 PF11793 FANCL_C: FANCL C-term 95.0 0.0075 1.6E-07 47.1 0.2 48 22-69 2-65 (70)
61 KOG4692 Predicted E3 ubiquitin 94.9 0.014 3E-07 58.7 2.2 47 20-69 420-466 (489)
62 KOG0828 Predicted E3 ubiquitin 94.9 0.012 2.5E-07 61.3 1.5 49 20-69 569-633 (636)
63 KOG3800 Predicted E3 ubiquitin 94.9 0.019 4.2E-07 56.2 2.9 45 24-69 2-50 (300)
64 smart00744 RINGv The RING-vari 94.7 0.023 5E-07 41.4 2.2 42 24-66 1-49 (49)
65 PF14570 zf-RING_4: RING/Ubox 94.5 0.037 8E-07 40.5 2.8 44 25-69 1-47 (48)
66 KOG3161 Predicted E3 ubiquitin 94.2 0.022 4.8E-07 61.0 1.6 40 19-63 8-51 (861)
67 KOG4362 Transcriptional regula 94.1 0.042 9E-07 59.6 3.6 53 16-69 15-68 (684)
68 KOG0826 Predicted E3 ubiquitin 94.1 0.026 5.6E-07 56.2 1.8 48 20-69 298-345 (357)
69 KOG1734 Predicted RING-contain 93.9 0.017 3.6E-07 56.2 0.1 50 19-69 221-280 (328)
70 KOG4275 Predicted E3 ubiquitin 93.9 0.011 2.3E-07 58.1 -1.3 41 22-69 300-341 (350)
71 KOG3039 Uncharacterized conser 93.8 0.041 8.8E-07 53.0 2.4 47 9-56 30-76 (303)
72 KOG1571 Predicted E3 ubiquitin 93.1 0.035 7.5E-07 55.9 0.9 46 18-69 301-346 (355)
73 PF02891 zf-MIZ: MIZ/SP-RING z 93.1 0.078 1.7E-06 38.9 2.5 46 22-67 2-49 (50)
74 KOG1941 Acetylcholine receptor 93.1 0.044 9.6E-07 55.8 1.5 55 13-67 356-413 (518)
75 PF14447 Prok-RING_4: Prokaryo 93.0 0.042 9.1E-07 41.3 0.9 46 19-69 4-49 (55)
76 KOG3002 Zn finger protein [Gen 92.9 0.073 1.6E-06 52.7 2.7 63 18-91 44-106 (299)
77 COG5194 APC11 Component of SCF 92.6 0.073 1.6E-06 43.0 1.9 32 36-69 49-80 (88)
78 KOG1493 Anaphase-promoting com 92.3 0.035 7.6E-07 44.4 -0.3 46 24-69 22-80 (84)
79 COG5175 MOT2 Transcriptional r 92.0 0.088 1.9E-06 52.8 2.0 51 17-69 10-63 (480)
80 COG5220 TFB3 Cdk activating ki 90.8 0.071 1.5E-06 51.2 0.0 47 22-69 10-63 (314)
81 COG5236 Uncharacterized conser 90.4 0.16 3.4E-06 51.2 2.0 53 16-69 55-107 (493)
82 PHA03096 p28-like protein; Pro 89.9 0.16 3.6E-06 50.0 1.7 44 23-66 179-230 (284)
83 KOG2817 Predicted E3 ubiquitin 89.8 0.21 4.5E-06 51.0 2.3 48 19-68 331-383 (394)
84 KOG3579 Predicted E3 ubiquitin 89.6 0.27 5.9E-06 48.4 2.9 69 21-93 267-342 (352)
85 KOG2932 E3 ubiquitin ligase in 88.7 0.21 4.7E-06 49.6 1.5 42 23-69 91-133 (389)
86 KOG1814 Predicted E3 ubiquitin 88.4 0.22 4.8E-06 51.1 1.4 48 19-66 181-236 (445)
87 PF10367 Vps39_2: Vacuolar sor 88.0 0.15 3.2E-06 41.6 -0.0 33 19-51 75-108 (109)
88 KOG1812 Predicted E3 ubiquitin 86.8 0.47 1E-05 48.6 2.8 43 22-64 146-195 (384)
89 KOG3970 Predicted E3 ubiquitin 86.2 0.91 2E-05 43.5 4.0 49 20-69 48-104 (299)
90 KOG0298 DEAD box-containing he 85.6 0.26 5.7E-06 56.6 0.2 51 17-69 1148-1198(1394)
91 KOG2930 SCF ubiquitin ligase, 84.9 0.53 1.1E-05 39.9 1.6 28 40-69 80-107 (114)
92 KOG2114 Vacuolar assembly/sort 84.6 0.42 9.1E-06 53.0 1.2 44 19-67 837-880 (933)
93 KOG1815 Predicted E3 ubiquitin 84.2 1.1 2.3E-05 46.7 3.9 51 20-70 68-126 (444)
94 KOG2034 Vacuolar sorting prote 83.2 0.56 1.2E-05 52.2 1.4 40 16-55 811-851 (911)
95 PF07800 DUF1644: Protein of u 81.9 0.93 2E-05 41.1 2.1 21 21-42 1-21 (162)
96 PF08746 zf-RING-like: RING-li 81.4 1.3 2.9E-05 31.4 2.3 41 25-65 1-43 (43)
97 PHA02825 LAP/PHD finger-like p 80.4 1.8 3.8E-05 39.4 3.3 49 20-70 6-59 (162)
98 KOG4445 Uncharacterized conser 79.3 0.85 1.8E-05 45.3 1.0 51 20-70 113-186 (368)
99 PHA02862 5L protein; Provision 78.1 2 4.2E-05 38.6 2.8 45 23-69 3-52 (156)
100 PF05605 zf-Di19: Drought indu 77.3 1.4 3.1E-05 32.3 1.5 39 21-67 1-39 (54)
101 KOG2169 Zn-finger transcriptio 75.0 2.3 5E-05 46.4 2.9 76 14-92 298-375 (636)
102 PF07191 zinc-ribbons_6: zinc- 74.8 0.63 1.4E-05 36.7 -1.0 40 22-69 1-40 (70)
103 COG5109 Uncharacterized conser 70.4 2.7 5.8E-05 42.2 1.9 49 18-67 332-384 (396)
104 PF05883 Baculo_RING: Baculovi 69.1 2.1 4.5E-05 37.9 0.7 43 13-55 16-67 (134)
105 KOG0314 Predicted E3 ubiquitin 68.7 3.9 8.4E-05 42.8 2.8 75 15-94 212-288 (448)
106 KOG1100 Predicted E3 ubiquitin 68.0 2.5 5.5E-05 39.8 1.2 38 25-69 161-199 (207)
107 KOG3113 Uncharacterized conser 67.8 5.9 0.00013 38.6 3.6 47 20-70 109-158 (293)
108 PF10497 zf-4CXXC_R1: Zinc-fin 66.4 4.4 9.6E-05 34.2 2.2 48 22-69 7-71 (105)
109 PF10571 UPF0547: Uncharacteri 65.4 3.5 7.7E-05 26.3 1.1 10 24-33 2-11 (26)
110 PLN02189 cellulose synthase 64.4 3.8 8.3E-05 46.8 1.9 46 23-69 35-86 (1040)
111 PF12906 RINGv: RING-variant d 62.0 4.3 9.4E-05 29.2 1.2 40 25-65 1-47 (47)
112 PF07975 C1_4: TFIIH C1-like d 61.9 7.7 0.00017 28.8 2.5 25 40-66 26-50 (51)
113 PLN02638 cellulose synthase A 61.3 4.8 0.0001 46.3 1.9 46 23-69 18-69 (1079)
114 PLN02436 cellulose synthase A 61.2 4.7 0.0001 46.3 1.9 46 23-69 37-88 (1094)
115 COG3813 Uncharacterized protei 60.9 6.8 0.00015 31.3 2.2 41 24-69 7-51 (84)
116 KOG1940 Zn-finger protein [Gen 59.8 5.7 0.00012 39.1 2.0 43 22-67 158-204 (276)
117 KOG0825 PHD Zn-finger protein 59.5 3.9 8.4E-05 45.5 0.8 49 21-69 95-153 (1134)
118 KOG2979 Protein involved in DN 59.4 5.4 0.00012 38.9 1.7 44 22-65 176-219 (262)
119 KOG1952 Transcription factor N 58.6 9.2 0.0002 42.9 3.4 55 15-69 184-246 (950)
120 PF03854 zf-P11: P-11 zinc fin 58.0 5.9 0.00013 29.2 1.3 28 40-69 17-45 (50)
121 PLN02195 cellulose synthase A 57.3 6.4 0.00014 44.8 2.0 46 23-69 7-58 (977)
122 KOG1428 Inhibitor of type V ad 55.9 10 0.00022 45.2 3.2 49 20-69 3484-3543(3738)
123 PLN02400 cellulose synthase 55.5 5.8 0.00013 45.6 1.4 47 23-70 37-89 (1085)
124 KOG3899 Uncharacterized conser 53.7 7 0.00015 38.9 1.5 29 41-69 325-364 (381)
125 PF06844 DUF1244: Protein of u 51.7 7.7 0.00017 30.4 1.1 13 44-56 11-23 (68)
126 PF14569 zf-UDP: Zinc-binding 50.8 17 0.00037 29.4 2.9 47 22-69 9-61 (80)
127 PLN02915 cellulose synthase A 50.8 8.9 0.00019 44.0 1.8 48 21-69 14-67 (1044)
128 PRK04023 DNA polymerase II lar 50.3 12 0.00026 42.9 2.7 65 21-90 625-694 (1121)
129 PF10235 Cript: Microtubule-as 48.8 8.9 0.00019 31.7 1.1 35 23-69 45-79 (90)
130 COG5627 MMS21 DNA repair prote 48.1 15 0.00033 35.5 2.7 59 22-83 189-249 (275)
131 PF10272 Tmpp129: Putative tra 47.4 12 0.00026 38.2 2.0 29 41-69 311-350 (358)
132 KOG4718 Non-SMC (structural ma 46.8 11 0.00024 35.9 1.5 43 23-67 182-224 (235)
133 KOG0824 Predicted E3 ubiquitin 46.8 5.8 0.00013 39.5 -0.3 49 18-68 101-149 (324)
134 KOG4185 Predicted E3 ubiquitin 45.8 4.4 9.5E-05 39.4 -1.3 45 23-68 208-265 (296)
135 KOG1812 Predicted E3 ubiquitin 43.1 10 0.00022 39.0 0.7 35 22-57 306-345 (384)
136 KOG3268 Predicted E3 ubiquitin 43.0 17 0.00037 33.8 2.1 30 40-69 189-227 (234)
137 PF06906 DUF1272: Protein of u 41.7 19 0.00042 27.3 1.9 43 23-69 6-51 (57)
138 PF05502 Dynactin_p62: Dynacti 40.3 9.9 0.00022 40.2 0.2 52 19-70 2-63 (483)
139 KOG4642 Chaperone-dependent E3 39.1 27 0.00058 34.3 2.9 71 18-93 207-277 (284)
140 TIGR00622 ssl1 transcription f 38.0 19 0.00042 30.9 1.6 42 23-66 56-110 (112)
141 PF14353 CpXC: CpXC protein 37.2 25 0.00055 29.9 2.2 46 22-69 1-48 (128)
142 COG1198 PriA Primosomal protei 36.4 15 0.00033 40.9 0.8 66 19-95 432-508 (730)
143 COG0068 HypF Hydrogenase matur 35.1 22 0.00047 39.5 1.7 51 19-69 98-183 (750)
144 COG5183 SSM4 Protein involved 33.9 52 0.0011 37.3 4.3 50 20-70 10-66 (1175)
145 KOG2231 Predicted E3 ubiquitin 33.5 27 0.00058 38.5 2.1 45 24-69 2-51 (669)
146 KOG1701 Focal adhesion adaptor 32.4 20 0.00043 37.5 0.9 37 20-56 300-336 (468)
147 PRK11088 rrmA 23S rRNA methylt 32.1 22 0.00047 34.1 1.1 24 22-45 2-27 (272)
148 PF02318 FYVE_2: FYVE-type zin 32.1 5.6 0.00012 33.9 -2.7 46 21-67 53-102 (118)
149 KOG2462 C2H2-type Zn-finger pr 31.2 15 0.00033 36.1 -0.1 11 59-69 215-225 (279)
150 COG3492 Uncharacterized protei 29.9 23 0.0005 29.5 0.7 14 43-56 41-54 (104)
151 PF04216 FdhE: Protein involve 29.1 12 0.00025 36.7 -1.4 44 22-67 172-219 (290)
152 cd00350 rubredoxin_like Rubred 29.0 35 0.00075 22.6 1.3 9 59-67 17-25 (33)
153 PRK00420 hypothetical protein; 28.4 29 0.00063 29.8 1.1 29 2-33 6-34 (112)
154 KOG2068 MOT2 transcription fac 28.0 41 0.00088 34.0 2.2 45 23-69 250-297 (327)
155 PRK14714 DNA polymerase II lar 27.9 30 0.00064 40.8 1.4 68 22-90 667-740 (1337)
156 PLN02248 cellulose synthase-li 27.7 47 0.001 38.7 2.9 32 36-69 145-176 (1135)
157 PF00412 LIM: LIM domain; Int 24.7 44 0.00095 23.9 1.4 34 20-53 24-57 (58)
158 TIGR00143 hypF [NiFe] hydrogen 24.3 43 0.00094 37.2 1.8 50 20-69 66-150 (711)
159 smart00064 FYVE Protein presen 24.0 51 0.0011 24.7 1.7 34 22-55 10-46 (68)
160 PF15616 TerY-C: TerY-C metal 24.0 38 0.00082 29.9 1.0 49 12-69 67-115 (131)
161 COG3809 Uncharacterized protei 23.2 38 0.00083 27.5 0.8 29 23-68 2-30 (88)
162 PRK09678 DNA-binding transcrip 22.9 40 0.00086 26.7 0.9 10 23-32 2-11 (72)
163 PF04423 Rad50_zn_hook: Rad50 22.9 45 0.00098 24.3 1.1 9 61-69 22-30 (54)
164 cd00065 FYVE FYVE domain; Zinc 22.5 51 0.0011 23.7 1.3 33 23-55 3-38 (57)
165 smart00647 IBR In Between Ring 22.2 31 0.00068 25.1 0.1 33 22-54 18-59 (64)
166 KOG0309 Conserved WD40 repeat- 22.2 56 0.0012 36.7 2.1 41 22-64 1028-1069(1081)
167 smart00531 TFIIE Transcription 22.1 63 0.0014 28.5 2.1 41 16-69 93-133 (147)
168 PF10083 DUF2321: Uncharacteri 22.1 44 0.00096 30.4 1.1 24 42-70 27-50 (158)
169 KOG2042 Ubiquitin fusion degra 22.0 1.1E+02 0.0025 35.1 4.5 75 17-96 865-939 (943)
170 COG4098 comFA Superfamily II D 21.6 38 0.00083 34.9 0.6 32 20-52 37-69 (441)
171 PF03833 PolC_DP2: DNA polymer 21.3 32 0.00068 39.0 0.0 44 22-70 655-703 (900)
172 PF10186 Atg14: UV radiation r 20.7 61 0.0013 30.8 1.8 23 24-55 1-23 (302)
173 COG4647 AcxC Acetone carboxyla 20.3 40 0.00086 29.9 0.4 21 27-48 62-82 (165)
No 1
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=99.54 E-value=1.6e-15 Score=147.84 Aligned_cols=168 Identities=32% Similarity=0.467 Sum_probs=119.9
Q ss_pred hhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCC-CCCCCCCChHHHHHHHHH
Q 017736 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCL-PVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 12 v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~-~~~~lr~n~~L~~li~kl 90 (367)
..+....+..+++|.+|..+|.|++++..|.||||+.||..++.. ...||.|...++.. +...++.|..|++|+.++
T Consensus 5 ~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 5 RRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 457778899999999999999999999999999999999999976 67899999988754 578899999999999999
Q ss_pred CCCchhcccCCCCCCCCCCchhhhcccccceeecCCCcccCCCCCCCccchhhhhhhhhhcCCCCcccccccccCCCCCC
Q 017736 91 FPFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRTKGSTRKAAALRGCGFMLEDKKESSIEDHPMS 170 (367)
Q Consensus 91 fp~~~~k~~~~E~~~~v~~~~kRKerSLsSL~v~tP~vs~~~~~tgrRtk~~~r~aa~l~~~~~~~~~~~~~~~~~~~~~ 170 (367)
+|... +|..+.+..+..+.+.+..+.+.+|.+... .++ +.-.+++.+.
T Consensus 83 VPgl~----------------erE~k~~rdFy~~~~~~d~~~~~~~~~~~~--------------~~~--ek~~~t~~~~ 130 (331)
T KOG2660|consen 83 VPGLQ----------------EREMKRRRDFYKSRPLVDVPAGDTPERGHV--------------LGE--EKVPDTSDEI 130 (331)
T ss_pred cchHH----------------HHHHHHHHHHHHhCCCcccCCCCCcccccc--------------cCc--ccCCCchhhh
Confidence 99865 344455556666666666667777651111 011 2223444456
Q ss_pred CCCccccccccccccccccCCCCCCCCCCCCcccccccccccccccchhHhhhc
Q 017736 171 SSSPDSLNKNAQNRRQESYKAEPSSEQGPNKVGEITEAKADLWTPLNCLVEAAN 224 (367)
Q Consensus 171 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ve~a~ 224 (367)
.|++...-.+.+++...+.+- .-.|.+...-+||+ +++.-.|.
T Consensus 131 ~s~~l~~~~~~~~r~d~~~~~---------~~~e~~~~~k~l~~--~fvrcsa~ 173 (331)
T KOG2660|consen 131 ASLSLEVEDFKQNRLDEQVSV---------GLDEGKDTLKDLVR--RFLRCSAA 173 (331)
T ss_pred hccccchhhcccchhhhhhhc---------CCCccccccccccc--ceEeccHH
Confidence 677777777788887655431 11445556667773 44443333
No 2
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.20 E-value=1.5e-11 Score=92.54 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=54.7
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHH
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAK 89 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~k 89 (367)
+|.||||++++.+|+.+ +|||+||+.||.+|+.. ...||+|+..+ ...++.+|..+++.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~--~~~cP~~~~~~---~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLS--HGTDPVTGQPL---THEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHH--CCCCCCCcCCC---ChhhceeCHHHHHHHHh
Confidence 47899999999999998 99999999999999976 35799999877 56778999999888764
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.19 E-value=9.8e-12 Score=87.95 Aligned_cols=40 Identities=33% Similarity=0.991 Sum_probs=32.1
Q ss_pred ccccccccccccccCCCCCcccHHHHHHHhhcCCC--Cccccc
Q 017736 25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEA--DCCPVC 65 (367)
Q Consensus 25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~--~~CPvC 65 (367)
||||+++|.+||++ .|||+||..||.+++..... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999 99999999999999987543 579987
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=3.4e-11 Score=121.83 Aligned_cols=72 Identities=26% Similarity=0.576 Sum_probs=62.9
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
..+.|+..+.|+||+++|.+|+++ +|||+||..||..|+... ..||+|+..+ ....++.|..|.+|++.|..
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~~--~~CP~Cr~~~---~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQ--PKCPLCRAED---QESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhCC--CCCCCCCCcc---ccccCccchHHHHHHHHHHH
Confidence 457789999999999999999988 999999999999999663 4699999877 44578999999999998854
No 5
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.10 E-value=6.1e-11 Score=93.11 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=55.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
-+.|.||||+++|.+||.+ +|||+|++.||.+|+.. ....||.|+..+ ....+.+|..|+..|+.|..
T Consensus 2 P~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~-~~~~~P~t~~~l---~~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQ-NGGTDPFTRQPL---SESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCT-TSSB-TTT-SB----SGGGSEE-HHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHc-CCCCCCCCCCcC---CcccceECHHHHHHHHHHHH
Confidence 4689999999999999999 89999999999999977 456799999887 56789999999999999854
No 6
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.09 E-value=2.6e-11 Score=118.78 Aligned_cols=73 Identities=27% Similarity=0.537 Sum_probs=63.5
Q ss_pred hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
..+-.|.+.|+|.||.++|+.|+.+ +|+|+||..||..++.... .||.|...+ ....++-|..|.+|+..|-.
T Consensus 15 pslk~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~~p--~CP~C~~~~---~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 15 PSLKTLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSYKP--QCPTCCVTV---TESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred chhhhhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhccCC--CCCceeccc---chhhhhhhhHHHHHHHHHHH
Confidence 3556688899999999999999999 8999999999999997744 599999887 67778999999999998843
No 7
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.05 E-value=6.4e-11 Score=90.76 Aligned_cols=64 Identities=28% Similarity=0.718 Sum_probs=37.1
Q ss_pred hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHH
Q 017736 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIR 87 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li 87 (367)
+.+++.|.|++|.++|++||.+..|.|.||..||...+.. .||+|+.+. ...+++.|..|.+|+
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Pa---w~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPA---WIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B----S-SS----HHHHHHH
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChH---HHHHHHhhhhhhccC
Confidence 4577889999999999999988799999999999886632 499999775 788899999998875
No 8
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.7e-11 Score=116.11 Aligned_cols=87 Identities=31% Similarity=0.655 Sum_probs=75.7
Q ss_pred hhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 11 ~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
.+.+.+..|.-++.|+||+.++...+++..|+|.||..||...++. +...||.||+.+ ...+.|+.|.....|+..+
T Consensus 32 Ei~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l--~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 32 EIMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKL--VSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hheecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhc--cccccCCCCccHHHHHHHH
Confidence 3567888899999999999999999999999999999999999987 556899999876 6788899999999999999
Q ss_pred CCCchhcccC
Q 017736 91 FPFKRRKVQA 100 (367)
Q Consensus 91 fp~~~~k~~~ 100 (367)
|+.....+..
T Consensus 109 ~~sie~~e~~ 118 (381)
T KOG0311|consen 109 YPSIEEYEAP 118 (381)
T ss_pred hccHHHHhcc
Confidence 9985444443
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.93 E-value=4.5e-10 Score=103.45 Aligned_cols=53 Identities=30% Similarity=0.639 Sum_probs=44.2
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhc--------------CCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD--------------EEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~--------------~~~~~CPvCR~~l 69 (367)
.-.+.+.+.|+||++.+.+|+.+ .|||.||+.||..|+.. .....||+|+..+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 33456789999999999999998 89999999999999752 1235799999877
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1.2e-09 Score=75.54 Aligned_cols=39 Identities=41% Similarity=1.075 Sum_probs=32.9
Q ss_pred ccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736 25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65 (367)
Q Consensus 25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvC 65 (367)
|+||++.+.+|+.+..|||+||..||.+|+.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999665599999999999999977 3679987
No 11
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-09 Score=105.59 Aligned_cols=71 Identities=27% Similarity=0.573 Sum_probs=58.7
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
.-.|..-+.|.||..+|..|+.+ .|||+||..||.+++..+ ..||+||.+. ...-++.+..+..+++.|-.
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~q--p~CP~Cr~~~---~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGTQ--PFCPVCREDP---CESRLRGSSGSREINESHAR 89 (391)
T ss_pred hhcchhHHHhhhhhheeecceec-ccccchhHHHHHHHhcCC--CCCccccccH---HhhhcccchhHHHHHHhhhh
Confidence 34466778999999999999999 999999999999999764 4599999876 45567778888888887743
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.83 E-value=1.9e-09 Score=74.81 Aligned_cols=41 Identities=32% Similarity=0.923 Sum_probs=36.8
Q ss_pred ccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736 25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65 (367)
Q Consensus 25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvC 65 (367)
|+||++.+.+|+.+.+|||+||..||.+|+...+...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999999955599999999999999986566789988
No 13
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.6e-09 Score=97.41 Aligned_cols=70 Identities=31% Similarity=0.693 Sum_probs=58.6
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
....+.+.+.|+||+++|.+|+++ +|||+||+.||..++. ....||.|+. .. ..+..|..+.+++..+-.
T Consensus 6 ~~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~----~~~~~n~~l~~~~~~~~~ 75 (386)
T KOG2177|consen 6 LLEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWE--GPLSCPVCRP-PS----RNLRPNVLLANLVERLRQ 75 (386)
T ss_pred hhhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcC--CCcCCcccCC-ch----hccCccHHHHHHHHHHHh
Confidence 445678899999999999999666 9999999999999987 5578999995 31 167799999999998853
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.1e-09 Score=100.93 Aligned_cols=49 Identities=31% Similarity=0.846 Sum_probs=43.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCC-CCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~~l 69 (367)
-..|.|.||++..+|||.+ .|||.||+-||++|+.... ...||+|+..+
T Consensus 45 ~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred CCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcCCCeeCCcccccc
Confidence 4578999999999999999 8999999999999998754 36789999766
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.63 E-value=2.3e-08 Score=68.60 Aligned_cols=44 Identities=36% Similarity=0.909 Sum_probs=38.0
Q ss_pred cccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccc
Q 017736 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNID 68 (367)
Q Consensus 24 tCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~ 68 (367)
.|+||++.+.+++.+..|||.||..|+..|+.. +...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 499999999888888669999999999999976 45679999864
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.60 E-value=2.6e-08 Score=72.39 Aligned_cols=46 Identities=28% Similarity=0.725 Sum_probs=38.6
Q ss_pred ccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
++..|.||++...+++.+ +|||. ||..|+.+++.. ...||+||.++
T Consensus 1 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i 47 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLL-PCGHLCFCEECAERLLKR--KKKCPICRQPI 47 (50)
T ss_dssp -HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHHT--TSBBTTTTBB-
T ss_pred CcCCCccCCccCCceEEe-CCCChHHHHHHhHHhccc--CCCCCcCChhh
Confidence 357899999999998888 99999 999999999873 56799999876
No 17
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.58 E-value=1.9e-08 Score=71.15 Aligned_cols=41 Identities=39% Similarity=0.855 Sum_probs=32.7
Q ss_pred cccccccccc--cccccCCCCCcccHHHHHHHhhcCCCCcccccc
Q 017736 24 TCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66 (367)
Q Consensus 24 tCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR 66 (367)
.|+||++.|. +.+..+.|||.||..||.+|+... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 5999999884 344444899999999999999874 4799996
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.57 E-value=3.4e-08 Score=94.10 Aligned_cols=48 Identities=27% Similarity=0.667 Sum_probs=38.6
Q ss_pred ccccccccccccccccc-------ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREAT-------TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPv-------tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.++..|+||++.+.++. .+..|+|.||..||.+|+.. ...||+||..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEe
Confidence 45689999999876541 33389999999999999965 35799999876
No 19
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.9e-08 Score=95.95 Aligned_cols=48 Identities=33% Similarity=0.697 Sum_probs=42.1
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+....|.||++...+|.-+ +|||.||+.||..|..... .||+||..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek~--eCPlCR~~~ 283 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEKA--ECPLCREKF 283 (293)
T ss_pred CCCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHcccc--CCCcccccC
Confidence 34558899999999999999 9999999999999997644 499999876
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.54 E-value=3.5e-08 Score=70.36 Aligned_cols=37 Identities=27% Similarity=0.843 Sum_probs=23.4
Q ss_pred cccccccccc----ccccCCCCCcccHHHHHHHhhcC--CCCccc
Q 017736 25 CPLCNSLLRE----ATTISLCLHTFCRKCIYEKLSDE--EADCCP 63 (367)
Q Consensus 25 CpIC~~ll~d----Pvtl~~CgHtFC~~CI~~~l~~~--~~~~CP 63 (367)
||||.+ |.+ |+.+ .|||+||+.||.+++... ..+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 9999 799999999999999864 357787
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.1e-08 Score=88.49 Aligned_cols=52 Identities=29% Similarity=0.752 Sum_probs=41.6
Q ss_pred hhhccccccccccccccccc--ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 15 KRETLEACMTCPLCNSLLRE--ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~d--Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
....-+..+.||||++-+.+ |+.+ .|||.||..||...+... ..||+|+..+
T Consensus 124 ~~~~~~~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~~--~~CP~C~kkI 177 (187)
T KOG0320|consen 124 DPLRKEGTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKNT--NKCPTCRKKI 177 (187)
T ss_pred cccccccccCCCceecchhhcccccc-ccchhHHHHHHHHHHHhC--CCCCCccccc
Confidence 33444567899999998875 4556 999999999999999763 4699999765
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.36 E-value=2.3e-07 Score=65.88 Aligned_cols=42 Identities=26% Similarity=0.741 Sum_probs=33.1
Q ss_pred ccccccccc--ccccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 24 TCPLCNSLL--REATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 24 tCpIC~~ll--~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
.|+||.+.+ ..+..++.|||+||..|+.... .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 489999998 3344444999999999999987 34567999973
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.36 E-value=2.3e-07 Score=61.35 Aligned_cols=39 Identities=41% Similarity=1.086 Sum_probs=33.9
Q ss_pred ccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736 25 CPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65 (367)
Q Consensus 25 CpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvC 65 (367)
|+||++....++.+ +|||.||..|+..|+.. +...||+|
T Consensus 1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~~-~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLKS-GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEe-cCCChHHHHHHHHHHHh-CcCCCCCC
Confidence 89999998888888 99999999999999973 44579987
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.2e-07 Score=95.77 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=42.4
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcC---CCCcccccccccC
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE---EADCCPVCNIDLG 70 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~---~~~~CPvCR~~l~ 70 (367)
.+.||||+....-|+.+ .|||.||..||.++|... +-..||+|+..++
T Consensus 186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcc
Confidence 78999999999999999 799999999999999864 2367999998774
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=98.33 E-value=3e-07 Score=86.39 Aligned_cols=52 Identities=23% Similarity=0.614 Sum_probs=39.9
Q ss_pred cccccccccccccccccc--------cccCCCCCcccHHHHHHHhhcC----CCCccccccccc
Q 017736 18 TLEACMTCPLCNSLLREA--------TTISLCLHTFCRKCIYEKLSDE----EADCCPVCNIDL 69 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dP--------vtl~~CgHtFC~~CI~~~l~~~----~~~~CPvCR~~l 69 (367)
....+..|+||++...++ -.+..|+|.||..||..|.... ....||+||..+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 345679999999986543 1344899999999999998742 135699999876
No 26
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.30 E-value=6.6e-07 Score=87.04 Aligned_cols=67 Identities=34% Similarity=0.660 Sum_probs=56.8
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
|.|++|..++++|+.+..|+|+||..||...+-+ ..+.||.|...- ..++.|.+|...+..++.++.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~rkd--vlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSRKD--VLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccccc--chhhccCccHHHHHHHHHHHH
Confidence 8999999999999999889999999999998866 458899997521 256788899888888888765
No 27
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=1.3e-06 Score=85.96 Aligned_cols=48 Identities=27% Similarity=0.748 Sum_probs=36.8
Q ss_pred ccccccccccc-ccccc---ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSL-LREAT---TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~l-l~dPv---tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
++..||+|... +..|- .+.+|||.||..||...|.. +...||.|+..+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~l 53 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPL 53 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCcc
Confidence 35789999983 33442 33379999999999998865 446899999877
No 28
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.7e-07 Score=90.55 Aligned_cols=129 Identities=20% Similarity=0.328 Sum_probs=80.0
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCC-CCCCC-CChHHHHHHHHHCC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLP-VEKLR-PDHNLQDIRAKIFP 92 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~-~~~lr-~n~~L~~li~klfp 92 (367)
....+..+|.|.||..+|..||++ +|||+||..||.+.+.. ...||.|+..+.... ..... .+..+..++..|++
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQ--ETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhcc--CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 344568899999999999999999 99999999999998754 457999998774211 11112 35666678888876
Q ss_pred CchhcccCCCCCCCCCCchhhhccccc-ceeecCCCcccCCCCCCCccchhhhhh
Q 017736 93 FKRRKVQAPEVMPSISLPAKRKERSLS-SLVVSTPKVPQHTGLTGKRTKGSTRKA 146 (367)
Q Consensus 93 ~~~~k~~~~E~~~~v~~~~kRKerSLs-SL~v~tP~vs~~~~~tgrRtk~~~r~a 146 (367)
.............-....-......+. =-+...|.+......-|.|-+--.|+.
T Consensus 154 ~~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~ 208 (398)
T KOG4159|consen 154 GSSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRL 208 (398)
T ss_pred hhhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHH
Confidence 543311100000000011111222221 112346777778888888888766664
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6e-07 Score=86.03 Aligned_cols=49 Identities=24% Similarity=0.585 Sum_probs=42.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..++.|.||++....|..+ +|||.||..||...+.......||+||...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccc-cccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 5588999999999999999 999999999999955555556699999754
No 30
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.16 E-value=5.2e-08 Score=100.38 Aligned_cols=130 Identities=22% Similarity=0.326 Sum_probs=85.5
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhc---CCCCcccccccccCCCCCCC----CC-CChHHHHHHHHHC
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD---EEADCCPVCNIDLGCLPVEK----LR-PDHNLQDIRAKIF 91 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~---~~~~~CPvCR~~l~~~~~~~----lr-~n~~L~~li~klf 91 (367)
.....|.+|.+...+++.. .|.|+||+.||.+++.. .....||+|...+....... +. ..+....|+.++-
T Consensus 534 k~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRin 612 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRIN 612 (791)
T ss_pred cCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcc
Confidence 4567899999999999999 99999999999888754 23478999998874221111 11 0122344555554
Q ss_pred CCchhcccCCCCCCCCCCchhhhcccccceeecCCCcccCCCCCCCccchhhhhhhhhhcC
Q 017736 92 PFKRRKVQAPEVMPSISLPAKRKERSLSSLVVSTPKVPQHTGLTGKRTKGSTRKAAALRGC 152 (367)
Q Consensus 92 p~~~~k~~~~E~~~~v~~~~kRKerSLsSL~v~tP~vs~~~~~tgrRtk~~~r~aa~l~~~ 152 (367)
-...+....-|++.....-.+.+++++.++++ .+|++..++..+|.+.++.....|.|+
T Consensus 613 m~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVF--SQFTSmLDLi~~rL~kaGfscVkL~Gs 671 (791)
T KOG1002|consen 613 MDDWQSSTKIEALVEELYFLRERDRTAKSIVF--SQFTSMLDLIEWRLGKAGFSCVKLVGS 671 (791)
T ss_pred hhhhcchhHHHHHHHHHHHHHHcccchhhhhH--HHHHHHHHHHHHHhhccCceEEEeccC
Confidence 33333333333333223335778899999985 456778888999888766666555544
No 31
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.11 E-value=1.5e-06 Score=65.59 Aligned_cols=45 Identities=22% Similarity=0.537 Sum_probs=33.8
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPV 64 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPv 64 (367)
.-.+.|||.+..|.+||....|+|+|.+..|.+++...+...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 456899999999999999779999999999999997667788998
No 32
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.5e-06 Score=91.50 Aligned_cols=55 Identities=25% Similarity=0.736 Sum_probs=46.8
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC 71 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~ 71 (367)
-...+..-++|++|..-+.+.|.+ .|||.||..||...+.. ....||.|...||.
T Consensus 636 Elk~yK~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 636 ELKEYKELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYET-RQRKCPKCNAAFGA 690 (698)
T ss_pred HHHHHHhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence 344567789999999999999988 99999999999998876 44689999999863
No 33
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.90 E-value=4.9e-06 Score=65.46 Aligned_cols=41 Identities=29% Similarity=0.777 Sum_probs=31.9
Q ss_pred ccccccccccc------------ccccCCCCCcccHHHHHHHhhcCCCCcccccc
Q 017736 24 TCPLCNSLLRE------------ATTISLCLHTFCRKCIYEKLSDEEADCCPVCN 66 (367)
Q Consensus 24 tCpIC~~ll~d------------Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR 66 (367)
.|.||++.|.+ ++.+..|||.|...||.+|+... ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN--NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS--SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC--CcCCCCC
Confidence 49999999943 33444799999999999999664 4799997
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.73 E-value=1.4e-05 Score=74.05 Aligned_cols=59 Identities=24% Similarity=0.521 Sum_probs=45.6
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHH
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRA 88 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~ 88 (367)
|.|.||...|..||.+ .|||.||..|..+.++.. ..|-+|.... ...+-+...++.|+.
T Consensus 197 F~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~kg--~~C~~Cgk~t----~G~f~V~~d~~kmL~ 255 (259)
T COG5152 197 FLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQKG--DECGVCGKAT----YGRFWVVSDLQKMLN 255 (259)
T ss_pred eeehhchhhccchhhh-hcchhHHHHHHHHHhccC--Ccceecchhh----ccceeHHhhHHHHHh
Confidence 7899999999999999 999999999998888653 4699998654 233444555555554
No 35
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.72 E-value=2e-05 Score=80.25 Aligned_cols=73 Identities=33% Similarity=0.687 Sum_probs=55.2
Q ss_pred hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736 14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
-....+.+.+.|++|...+.+|+.++.|||.||..|+..|+.. ...||.|+..+. ....+..+..++..+..+
T Consensus 13 ~~~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~--~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 13 HLGRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELT--QAEELPVPRALRRELLKL 85 (391)
T ss_pred ccCCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccc--hhhccCchHHHHHHHHhc
Confidence 3344478899999999999999995589999999999999977 567999987662 333333455555555544
No 36
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=2.2e-05 Score=75.81 Aligned_cols=54 Identities=24% Similarity=0.525 Sum_probs=45.9
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.-....+|++|.+.-..|.++.+|+|.||+.||.....-.-.+.||.|....
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 344567889999999999999997799999999999887665568999998765
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.1e-05 Score=75.63 Aligned_cols=45 Identities=24% Similarity=0.728 Sum_probs=39.7
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|+||+.-..-||.+ .|+|.||+.||...+.. +...|++||.++
T Consensus 8 ~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~n-dk~~CavCR~pi 52 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNL-YCFHKFCYICIKGSYKN-DKKTCAVCRFPI 52 (324)
T ss_pred CcceeeeccCCcCccc-cccchhhhhhhcchhhc-CCCCCceecCCC
Confidence 4699999999999888 99999999999988765 456799999887
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=4.7e-05 Score=80.54 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=40.5
Q ss_pred cccccccccccccccc-----ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLRE-----ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~d-----Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
......|+||.+.+.. |..+ +|+|.||..|+..|++.. ..||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~--qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQ--QTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHh--CcCCcchhhh
Confidence 3457889999999998 6666 999999999999999874 4699999743
No 39
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.9e-05 Score=75.04 Aligned_cols=46 Identities=33% Similarity=0.682 Sum_probs=38.6
Q ss_pred ccccccccccc--cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+|.||++.|. +-+.+.+|.|.|-..||..|+.+.. ..||+|+..+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r-~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR-TFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC-ccCCCCCCcC
Confidence 49999999886 5666669999999999999998753 3599999765
No 40
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=7e-05 Score=73.05 Aligned_cols=44 Identities=23% Similarity=0.644 Sum_probs=38.5
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+-|-||...|.+||.+ .|+|+||..|....++. ...|.+|...+
T Consensus 242 f~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk--~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQK--GEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhh-cCCceeehhhhcccccc--CCcceeccccc
Confidence 5699999999999999 99999999999888865 34699998765
No 41
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.13 E-value=0.00031 Score=57.17 Aligned_cols=51 Identities=24% Similarity=0.515 Sum_probs=39.4
Q ss_pred ccccccccccccccc------------cccccCCCCCcccHHHHHHHhhcCC-CCccccccccc
Q 017736 19 LEACMTCPLCNSLLR------------EATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~------------dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~~l 69 (367)
+..+-.|.||...|. -|+.+-.|+|.|...||.+|+..+. ...||+||..+
T Consensus 18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 345677888887764 2555557999999999999998753 36899999865
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00041 Score=69.68 Aligned_cols=48 Identities=21% Similarity=0.574 Sum_probs=38.7
Q ss_pred cccccccccccccc-ccc------------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLL-REA------------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll-~dP------------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.++-+|.||++-+ ..+ -.+ +|||.|-..|+..|+..+ ..||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERq--QTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQ--QTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhc--cCCCcccCcc
Confidence 35677899999974 333 567 899999999999999764 4599999875
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00044 Score=69.41 Aligned_cols=50 Identities=24% Similarity=0.663 Sum_probs=40.2
Q ss_pred ccccccccccccccccc-----c--cCCCCCcccHHHHHHHhhcCC-----CCccccccccc
Q 017736 20 EACMTCPLCNSLLREAT-----T--ISLCLHTFCRKCIYEKLSDEE-----ADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPv-----t--l~~CgHtFC~~CI~~~l~~~~-----~~~CPvCR~~l 69 (367)
..+..|-||++...+.. . +..|.|.||..||..|-.... +..||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34789999999888776 2 337999999999999985544 47899999765
No 44
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00051 Score=67.42 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=37.3
Q ss_pred ccccccccccc--cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..|.||+.-|. +-+..++|.|.|...|+..|+... ...||+||..+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y-~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY-SNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh-cccCCccCCCC
Confidence 67999999764 445555999999999999999753 35799999876
No 45
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.32 E-value=0.0017 Score=66.53 Aligned_cols=37 Identities=32% Similarity=0.840 Sum_probs=33.5
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHHHHhhc
Q 017736 19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD 56 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~ 56 (367)
++++|.|+||..+|++|+++ +|+|..|+.|....+..
T Consensus 1 meeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIIL-PCSHNLCQACARNILVQ 37 (699)
T ss_pred CcccccCceehhhccCceEe-ecccHHHHHHHHhhccc
Confidence 46889999999999999999 99999999999877654
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0023 Score=48.01 Aligned_cols=45 Identities=22% Similarity=0.634 Sum_probs=37.8
Q ss_pred ccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|.||.+--.+.|.- -|||- .|+.|-.+.++. ....||+||.++
T Consensus 8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKA-LHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHc-cCCcCcchhhHH
Confidence 5799999998888887 79995 799999888875 446799999765
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.85 E-value=0.0029 Score=65.01 Aligned_cols=47 Identities=32% Similarity=0.692 Sum_probs=37.2
Q ss_pred ccccccccccccccccccc---ccCCCCCcccHHHHHHHhhcCCCCcccccccc
Q 017736 18 TLEACMTCPLCNSLLREAT---TISLCLHTFCRKCIYEKLSDEEADCCPVCNID 68 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dPv---tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~ 68 (367)
-+.+.=+||||++-+-.-+ .+..|.|+|-..|+..|.. ..||+||..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~ 220 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYC 220 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhh
Confidence 3556679999999887665 3448999999999999873 369999953
No 48
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0068 Score=58.92 Aligned_cols=67 Identities=22% Similarity=0.473 Sum_probs=50.4
Q ss_pred cccccccccccc------cccccCCCCCcccHHHHHHHhhcCCCCcccccccc--cCCCCCCCCCCChHHHHHHHHH
Q 017736 22 CMTCPLCNSLLR------EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNID--LGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 22 ~LtCpIC~~ll~------dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~--l~~~~~~~lr~n~~L~~li~kl 90 (367)
.+.|-||.+.|. .|..+ .|||+||..|+...+.. ....||.||.. +.......+..|+.+..++..+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 467999998764 47777 79999999999998866 44568999987 3233446677788887777765
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.71 E-value=0.0043 Score=63.04 Aligned_cols=45 Identities=24% Similarity=0.741 Sum_probs=37.0
Q ss_pred cccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 24 tCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.|.||-+--.+ |.+-+|||..|..|+..|....+...||.||..+
T Consensus 371 LCKICaendKd-vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 371 LCKICAENDKD-VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHhhccCCC-cccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 58899886665 4555899999999999998766677899999766
No 50
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.003 Score=63.89 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=34.7
Q ss_pred cccccccccccc---cccCCCCCcccHHHHHHHhhcCCC-CcccccccccC
Q 017736 24 TCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDEEA-DCCPVCNIDLG 70 (367)
Q Consensus 24 tCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~-~~CPvCR~~l~ 70 (367)
.|.||.+.+-.- -.+..|||+|-..|+.+|+..... ..||+|+..++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 599997765421 123239999999999999987555 58999996553
No 51
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.67 E-value=0.0035 Score=68.10 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=36.6
Q ss_pred ccccccccccccccccc--CCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736 22 CMTCPLCNSLLREATTI--SLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl--~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
.-.||+|+.-+.+-... ..|+|.||..||..|-+.. ..||+||..|.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhh
Confidence 45699999877765432 2699999999999998764 46999998875
No 52
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.65 E-value=0.0079 Score=58.06 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=39.8
Q ss_pred ccccccccccccccc---cccccCCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736 19 LEACMTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 19 Led~LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
-...|.|||+...|. .-|.+.+|||.|+..+|.+.- ....||+|..+|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence 467899999999885 346677999999999999863 2346999999885
No 53
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.63 E-value=0.0041 Score=67.65 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=38.8
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+.|.+|.+ ...++.+ .|+|.||..|+...+.......||.|+..+
T Consensus 455 ~~c~ic~~-~~~~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cccceee-cccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 89999999 6666666 999999999999999876666899999665
No 54
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.62 E-value=0.0056 Score=67.74 Aligned_cols=53 Identities=23% Similarity=0.726 Sum_probs=41.8
Q ss_pred hcccccccccccccccc--c---cc-ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 17 ETLEACMTCPLCNSLLR--E---AT-TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~--d---Pv-tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+...-.|+||..++. + |- +-..|.|.|...|+..|+...+...||+||..+
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 34666778999999876 1 21 112499999999999999998889999999765
No 55
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.0091 Score=57.36 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=39.8
Q ss_pred cccccccccccccccc---ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLREAT---TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~dPv---tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+.||+|.+.|.+.+ .+.+|||.||..|+...+.... .||+|..++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~--v~pv~d~pl 269 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM--VDPVTDKPL 269 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc--cccCCCCcC
Confidence 6789999999998764 3458999999999999997755 499998877
No 56
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.011 Score=59.32 Aligned_cols=47 Identities=26% Similarity=0.665 Sum_probs=38.7
Q ss_pred cccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+..-.|=||+.-.++-+.+ +|.|. .|..|.....- ....||+||.++
T Consensus 288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi 335 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRY--QTNNCPICRQPI 335 (349)
T ss_pred cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHH--hhcCCCccccch
Confidence 4467899999999998888 99997 69999876552 345699999877
No 57
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.07 E-value=0.0078 Score=57.44 Aligned_cols=61 Identities=21% Similarity=0.605 Sum_probs=38.8
Q ss_pred cccccccccc-ccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 23 MTCPLCNSLL-REATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 23 LtCpIC~~ll-~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
..|-.|...- .+|..++.|+|.||..|...... ..||+|+..+. ....+..|-.-+..||.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir-----~i~l~~slp~~ik~~F~ 65 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR-----IIQLNRSLPTDIKSYFA 65 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc----cccccccceee-----eeecccccchhHHHHcc
Confidence 3466666532 57777889999999999865432 26999998752 23333334444445543
No 58
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.01 Score=60.47 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=37.2
Q ss_pred cccccccccccccccc----ccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 21 ACMTCPLCNSLLREAT----TISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 21 d~LtCpIC~~ll~dPv----tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
...+||||++-+.-|. ....|||.|=..||..|+.+.....||.|..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 4578999999776542 3338999999999999996544578999974
No 59
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.97 E-value=0.018 Score=50.55 Aligned_cols=65 Identities=18% Similarity=0.444 Sum_probs=49.9
Q ss_pred hHhhhh--hhhhhhhhhcccccccccccccccccccccCC---CCCcccHHHHHHHhhcCCC-Cccccccccc
Q 017736 3 TVRTTA--RHVVKVKRETLEACMTCPLCNSLLREATTISL---CLHTFCRKCIYEKLSDEEA-DCCPVCNIDL 69 (367)
Q Consensus 3 ~~~~ma--~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~---CgHtFC~~CI~~~l~~~~~-~~CPvCR~~l 69 (367)
++..|. .+++.|..+. .-++|.||.+...|...+.+ ||-..|..|....|+.-.. ..||+|++.+
T Consensus 61 ~I~~~n~r~qvmnvF~d~--~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 61 KIKAINRRLQVMNVFLDP--KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred HHHHHHHHHHHheeecCC--CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 444443 3456666675 67999999999888777643 9999999999999876432 6799999877
No 60
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.95 E-value=0.0075 Score=47.14 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=22.5
Q ss_pred cccccccccccc----cccccC---CCCCcccHHHHHHHhhcCCC---------Cccccccccc
Q 017736 22 CMTCPLCNSLLR----EATTIS---LCLHTFCRKCIYEKLSDEEA---------DCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~----dPvtl~---~CgHtFC~~CI~~~l~~~~~---------~~CPvCR~~l 69 (367)
++.|+||...+. .|...- .|++.|-..||.+||..... ..||.|+.++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 578999998754 233332 48889999999999875211 2599999876
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.014 Score=58.66 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=39.5
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.++-.||||.---..+|.. +|+|.-|+.||.+++-+ ...|-.|...+
T Consensus 420 sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN--~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMN--CKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhcc-CCCCchHHHHHHHHHhc--CCeeeEeccee
Confidence 4567799999888888888 99999999999999965 45699998654
No 62
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.012 Score=61.35 Aligned_cols=49 Identities=24% Similarity=0.599 Sum_probs=35.3
Q ss_pred ccccccccccccccc----------------ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLRE----------------ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~d----------------Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+..--|+||+..+.- -..+++|.|.|-+.|+.+|+..- ...||+||.++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y-kl~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY-KLICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh-cccCCccCCCC
Confidence 445569999874320 02233999999999999999642 24799999876
No 63
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.019 Score=56.19 Aligned_cols=45 Identities=29% Similarity=0.683 Sum_probs=34.4
Q ss_pred ccccccc-ccccc---cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 24 TCPLCNS-LLREA---TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 24 tCpIC~~-ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.||+|.. .+.+| +.+-+|+|+.|..|+...+.. +...||.|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchh
Confidence 4999986 33444 123389999999999998876 557899998776
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.67 E-value=0.023 Score=41.43 Aligned_cols=42 Identities=14% Similarity=0.522 Sum_probs=33.1
Q ss_pred ccccccc--ccccccccCCCC-----CcccHHHHHHHhhcCCCCcccccc
Q 017736 24 TCPLCNS--LLREATTISLCL-----HTFCRKCIYEKLSDEEADCCPVCN 66 (367)
Q Consensus 24 tCpIC~~--ll~dPvtl~~Cg-----HtFC~~CI~~~l~~~~~~~CPvCR 66 (367)
.|.||++ .-.++... +|. |.|-..|+.+|+...+...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 33456655 885 778999999999887777899994
No 65
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.46 E-value=0.037 Score=40.50 Aligned_cols=44 Identities=34% Similarity=0.716 Sum_probs=21.5
Q ss_pred cccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 25 CPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 25 CpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
||+|.+.+.. -+.--+||+.+|+.|..+.+.+ +...||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 7888887621 1122368999999999998864 446799999765
No 66
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.022 Score=60.98 Aligned_cols=40 Identities=28% Similarity=0.711 Sum_probs=32.1
Q ss_pred ccccccccccccccc----cccccCCCCCcccHHHHHHHhhcCCCCccc
Q 017736 19 LEACMTCPLCNSLLR----EATTISLCLHTFCRKCIYEKLSDEEADCCP 63 (367)
Q Consensus 19 Led~LtCpIC~~ll~----dPvtl~~CgHtFC~~CI~~~l~~~~~~~CP 63 (367)
+.+.+.|+||+..|. .||.+ -|||+.|+.|++..+.. .||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~----scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNA----SCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhc----cCC
Confidence 455688999988764 69999 89999999999876633 477
No 67
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.12 E-value=0.042 Score=59.58 Aligned_cols=53 Identities=21% Similarity=0.678 Sum_probs=43.8
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCC-CCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~~l 69 (367)
...+.-.+.|+||...+.+|+.+ .|.|.||..|+...+.... ...||+|+..+
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred HHHHhhhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 34556689999999999999888 9999999999987776543 47899999655
No 68
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.026 Score=56.19 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=39.1
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.-.||||+.--.+|..+..-|-.||+.||..++.+. ..||+-..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~--~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY--GHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc--CCCCccCCcc
Confidence 34567999999999998885669999999999999864 4699876543
No 69
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.017 Score=56.25 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=39.4
Q ss_pred ccccccccccccccccc----------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLREA----------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~dP----------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.++-.|.||.+-+... .++ .|+|.|-..||..|-.-+....||.|...+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 34567799999866433 356 899999999999997776667899998665
No 70
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.011 Score=58.10 Aligned_cols=41 Identities=27% Similarity=0.662 Sum_probs=34.7
Q ss_pred cccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
...|.||++.-++-+.+ +|||. -|..|-.++ ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm------~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRM------NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEe-ecCcEEeehhhcccc------ccCchHHHHH
Confidence 67899999999999999 99994 699996542 3699999765
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.041 Score=53.02 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=41.2
Q ss_pred hhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc
Q 017736 9 RHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD 56 (367)
Q Consensus 9 ~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~ 56 (367)
.+..++..+.+.+.-.|.+|++.+++||.+ +=||.||+.||.+++-.
T Consensus 30 Tq~~RLgrDsiK~FdcCsLtLqPc~dPvit-~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 30 TQRERLGRDSIKPFDCCSLTLQPCRDPVIT-PDGYLFDREAILEYILA 76 (303)
T ss_pred hhhhhhcccccCCcceeeeecccccCCccC-CCCeeeeHHHHHHHHHH
Confidence 445567778888888999999999999999 99999999999998754
No 72
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.035 Score=55.87 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=35.2
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.....|-||.+-..+.+.+ +|||.-| |..-+.. ...||+||..+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~~---l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSKH---LPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccceeee-cCCcEEE--chHHHhh---CCCCchhHHHH
Confidence 345567799999999999998 9999977 7654432 23499999765
No 73
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.09 E-value=0.078 Score=38.86 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=24.9
Q ss_pred cccccccccccccccccCCCCCcccHHH--HHHHhhcCCCCccccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKC--IYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~C--I~~~l~~~~~~~CPvCR~ 67 (367)
.|.|||....+..|+....|.|.-|.+= +...........||+|.+
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence 3789999999999999889999876532 233333345588999975
No 74
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.06 E-value=0.044 Score=55.79 Aligned_cols=55 Identities=25% Similarity=0.551 Sum_probs=42.6
Q ss_pred hhhhhcccccccccccccccc---cccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 13 KVKRETLEACMTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 13 ~v~~e~Led~LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
.+..-.-+-.+.|..|.+.+- +-....+|.|.|-.+|+++++.+.+...||.||+
T Consensus 356 ra~~~~~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 356 RAHECVEETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHHHHHHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 333333455688999999763 3445559999999999999998888889999984
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.99 E-value=0.042 Score=41.29 Aligned_cols=46 Identities=22% Similarity=0.609 Sum_probs=35.2
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+..+..|-.|...-...+.+ +|||..|..|..-. .-..||.|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~----rYngCPfC~~~~ 49 (55)
T PF14447_consen 4 QQPEQPCVFCGFVGTKGTVL-PCGHLICDNCFPGE----RYNGCPFCGTPF 49 (55)
T ss_pred cccceeEEEccccccccccc-cccceeeccccChh----hccCCCCCCCcc
Confidence 34566788888877777777 99999999997542 234599999877
No 76
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.88 E-value=0.073 Score=52.75 Aligned_cols=63 Identities=17% Similarity=0.406 Sum_probs=45.9
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
.+.+.+.||||.+.+..|+.--.=||.-|..|-.+.. ..||.|+.+++ + .....++.+++..+
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g-----~-~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS-----NKCPTCRLPIG-----N-IRCRAMEKVAEAVL 106 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhc-----ccCCccccccc-----c-HHHHHHHHHHHhce
Confidence 3566788999999999998863338999999976432 46999998773 1 24456666666553
No 77
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.62 E-value=0.073 Score=43.00 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=26.1
Q ss_pred cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 36 TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 36 vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+..-.|.|.|-..||.+|+...+ .||+|++.+
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~--~CPld~q~w 80 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKG--VCPLDRQTW 80 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCC--CCCCCCcee
Confidence 44335999999999999998754 499999876
No 78
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.035 Score=44.44 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=35.1
Q ss_pred cccccccccc------------cccccCCCCCcccHHHHHHHhhcCCC-Cccccccccc
Q 017736 24 TCPLCNSLLR------------EATTISLCLHTFCRKCIYEKLSDEEA-DCCPVCNIDL 69 (367)
Q Consensus 24 tCpIC~~ll~------------dPvtl~~CgHtFC~~CI~~~l~~~~~-~~CPvCR~~l 69 (367)
+|-||.-.|. -|+.+--|.|.|-..||.+|+....+ ..||+||+.+
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 7777776664 24554469999999999999976543 6799999765
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.01 E-value=0.088 Score=52.84 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=35.3
Q ss_pred hccccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 17 ETLEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
++-++++ ||+|.+.+.. -..-.+||-..|+.|+...-++ -...||.||..+
T Consensus 10 sedeed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y 63 (480)
T COG5175 10 SEDEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKY 63 (480)
T ss_pred ccccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhc
Confidence 4445566 9999986542 2233368888899998775444 345799999876
No 80
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.82 E-value=0.071 Score=51.21 Aligned_cols=47 Identities=30% Similarity=0.660 Sum_probs=33.8
Q ss_pred cccccccccc-cccc-c--ccC-CCCCcccHHHHHHHhhcCCCCccc--cccccc
Q 017736 22 CMTCPLCNSL-LREA-T--TIS-LCLHTFCRKCIYEKLSDEEADCCP--VCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~l-l~dP-v--tl~-~CgHtFC~~CI~~~l~~~~~~~CP--vCR~~l 69 (367)
+-.||||... +-+| + .+. .|.|..|..|+.+.+.. +...|| -|...+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHH
Confidence 4579999862 2233 1 111 59999999999999987 556899 687655
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.37 E-value=0.16 Score=51.25 Aligned_cols=53 Identities=23% Similarity=0.511 Sum_probs=39.0
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.-++...|-||-.-+.--..+ +|+|..|.-|..+.-.-.....||+|+...
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34467889999999876655555 899999999986643323346699999653
No 82
>PHA03096 p28-like protein; Provisional
Probab=89.95 E-value=0.16 Score=49.96 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=30.5
Q ss_pred cccccccccccc-c------cccCCCCCcccHHHHHHHhhcCC-CCcccccc
Q 017736 23 MTCPLCNSLLRE-A------TTISLCLHTFCRKCIYEKLSDEE-ADCCPVCN 66 (367)
Q Consensus 23 LtCpIC~~ll~d-P------vtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR 66 (367)
-.|.||++.... + -++..|.|.||..||..|..... ...||.|+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 679999985432 1 13447999999999999976532 23455555
No 83
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=0.21 Score=51.04 Aligned_cols=48 Identities=15% Similarity=0.499 Sum_probs=38.0
Q ss_pred cccccccccccccc---ccccccCCCCCcccHHHHHHHhhcCCC--Ccccccccc
Q 017736 19 LEACMTCPLCNSLL---REATTISLCLHTFCRKCIYEKLSDEEA--DCCPVCNID 68 (367)
Q Consensus 19 Led~LtCpIC~~ll---~dPvtl~~CgHtFC~~CI~~~l~~~~~--~~CPvCR~~ 68 (367)
++..|.|||=.+.- +-|+.+ .|||..|+.-|.+..++ +. +.||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~n-g~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKN-GSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeee-eccceecHHHHHHHhhC-CCeeeeCCCCCcc
Confidence 67788999876643 457888 89999999999986655 55 899999643
No 84
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=0.27 Score=48.36 Aligned_cols=69 Identities=29% Similarity=0.501 Sum_probs=45.2
Q ss_pred ccccccccccccccccccCCC----CCcccHHHHHHHhhcCCC---CcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736 21 ACMTCPLCNSLLREATTISLC----LHTFCRKCIYEKLSDEEA---DCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF 93 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~C----gHtFC~~CI~~~l~~~~~---~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~ 93 (367)
.-|.|.+|++-|.|...+ .| .|.||.-|-.+.|+.++. ..||.--+ |.......+=..++..|..++..
T Consensus 267 apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdk---CPLvgS~vPWAFMQGEIatILag 342 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDK---CPLVGSNVPWAFMQGEIATILAG 342 (352)
T ss_pred CceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhhcCCCceeCCCCCc---CcccCCcccHHHhhhhHHHHhcc
Confidence 348999999999998887 77 699999999999987542 45664321 11122222334455566665543
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=0.21 Score=49.59 Aligned_cols=42 Identities=26% Similarity=0.700 Sum_probs=27.6
Q ss_pred ccccccccccccc-cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREA-TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dP-vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|--|...+..- ..| +|.|.||.+|..- ...+.||.|.-.+
T Consensus 91 HfCd~Cd~PI~IYGRmI-PCkHvFCl~CAr~----~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMI-PCKHVFCLECARS----DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeeccc-ccchhhhhhhhhc----CccccCcCcccHH
Confidence 3566676644332 345 9999999999753 2346799996443
No 86
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=0.22 Score=51.12 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=34.6
Q ss_pred ccccccccccccccc--cccccCCCCCcccHHHHHHHhhc---CCC---Ccccccc
Q 017736 19 LEACMTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSD---EEA---DCCPVCN 66 (367)
Q Consensus 19 Led~LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~---~~~---~~CPvCR 66 (367)
+...+.|.||.+... .-+...+|+|.||+.|+..++.. ++. ..||.|.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 345678999998654 44555599999999999988654 222 5687764
No 87
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.05 E-value=0.15 Score=41.58 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=26.9
Q ss_pred ccccccccccccccc-cccccCCCCCcccHHHHH
Q 017736 19 LEACMTCPLCNSLLR-EATTISLCLHTFCRKCIY 51 (367)
Q Consensus 19 Led~LtCpIC~~ll~-dPvtl~~CgHtFC~~CI~ 51 (367)
+.+.-.|++|...|. .++.+.+|||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 566788999999776 556677999999999975
No 88
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.83 E-value=0.47 Score=48.56 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=28.7
Q ss_pred cccccccccccccc---cccCCCCCcccHHHHHHHhhcC----CCCcccc
Q 017736 22 CMTCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDE----EADCCPV 64 (367)
Q Consensus 22 ~LtCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~----~~~~CPv 64 (367)
..+|.||..-...+ .....|+|.||..|+.+++... ....||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 67899999322222 1123699999999999998742 2356765
No 89
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=0.91 Score=43.46 Aligned_cols=49 Identities=31% Similarity=0.761 Sum_probs=37.9
Q ss_pred cccccccccccccc--cccccCCCCCcccHHHHHHHhhcC------CCCccccccccc
Q 017736 20 EACMTCPLCNSLLR--EATTISLCLHTFCRKCIYEKLSDE------EADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~--dPvtl~~CgHtFC~~CI~~~l~~~------~~~~CPvCR~~l 69 (367)
...-.|.+|...+. +.+.+ .|.|.|-..|+.++..+- ....||.|...+
T Consensus 48 DY~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 33456999998775 66777 899999999999986542 236899998766
No 90
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.59 E-value=0.26 Score=56.64 Aligned_cols=51 Identities=27% Similarity=0.556 Sum_probs=40.4
Q ss_pred hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+...+.|+||++++++--.+..|||-||..|+.-|+.. ...||+|....
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSIK 1198 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhhh
Confidence 3455667999999999955555589999999999999866 35699998544
No 91
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=0.53 Score=39.86 Aligned_cols=28 Identities=32% Similarity=0.698 Sum_probs=23.6
Q ss_pred CCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 40 LCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 40 ~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.|.|.|-.-||.+|+... ..||+|....
T Consensus 80 ~CNHaFH~hCisrWlktr--~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR--NVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhc--CcCCCcCcce
Confidence 499999999999999774 4599998653
No 92
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=0.42 Score=52.97 Aligned_cols=44 Identities=25% Similarity=0.597 Sum_probs=36.7
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
+-..-.|..|...|.-|+.-..|||.|-..|+. .+...||.|+.
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 334468999999999999888999999999987 24467999984
No 93
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=1.1 Score=46.67 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=36.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcC----CC--Ccccc--cccccC
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE----EA--DCCPV--CNIDLG 70 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~----~~--~~CPv--CR~~l~ 70 (367)
....+|.||...+...+....|||.||..|+..++... .. ..||. |...++
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 44588999999887533444999999999999988652 11 34654 666554
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=0.56 Score=52.24 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=32.9
Q ss_pred hhccccccccccccc-ccccccccCCCCCcccHHHHHHHhh
Q 017736 16 RETLEACMTCPLCNS-LLREATTISLCLHTFCRKCIYEKLS 55 (367)
Q Consensus 16 ~e~Led~LtCpIC~~-ll~dPvtl~~CgHtFC~~CI~~~l~ 55 (367)
.-.++..-.|-+|.. ++..|..+.+|||.|-+.||.+.+.
T Consensus 811 y~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 811 YRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred eEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 344667778999998 5568998889999999999988754
No 95
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=81.95 E-value=0.93 Score=41.11 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=17.8
Q ss_pred ccccccccccccccccccCCCC
Q 017736 21 ACMTCPLCNSLLREATTISLCL 42 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~Cg 42 (367)
++.+||||++.-.++|.+ -|.
T Consensus 1 ed~~CpICme~PHNAVLL-lCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLL-LCS 21 (162)
T ss_pred CCccCceeccCCCceEEE-Eec
Confidence 467899999999999998 553
No 96
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=81.42 E-value=1.3 Score=31.38 Aligned_cols=41 Identities=20% Similarity=0.569 Sum_probs=23.5
Q ss_pred ccccccccccccccC--CCCCcccHHHHHHHhhcCCCCccccc
Q 017736 25 CPLCNSLLREATTIS--LCLHTFCRKCIYEKLSDEEADCCPVC 65 (367)
Q Consensus 25 CpIC~~ll~dPvtl~--~CgHtFC~~CI~~~l~~~~~~~CPvC 65 (367)
|.+|.++...-+.=. .|+-.+-..|+..+++......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677888776655442 48878889999999988665579987
No 97
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=80.39 E-value=1.8 Score=39.39 Aligned_cols=49 Identities=18% Similarity=0.385 Sum_probs=35.9
Q ss_pred cccccccccccccccccccCCCCC--cc---cHHHHHHHhhcCCCCcccccccccC
Q 017736 20 EACMTCPLCNSLLREATTISLCLH--TF---CRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgH--tF---C~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
...-.|-||.+-..+ ..- +|.. +. -..|+.+|+...+...|+.|+..+.
T Consensus 6 ~~~~~CRIC~~~~~~-~~~-PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTN-YCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCC-ccC-CcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 445689999987542 222 5543 22 7899999999888889999997763
No 98
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=79.27 E-value=0.85 Score=45.31 Aligned_cols=51 Identities=22% Similarity=0.461 Sum_probs=37.2
Q ss_pred ccccccccccccccc-c-cccCCCCCcccHHHHHHHhhcC---------------------CCCcccccccccC
Q 017736 20 EACMTCPLCNSLLRE-A-TTISLCLHTFCRKCIYEKLSDE---------------------EADCCPVCNIDLG 70 (367)
Q Consensus 20 ed~LtCpIC~~ll~d-P-vtl~~CgHtFC~~CI~~~l~~~---------------------~~~~CPvCR~~l~ 70 (367)
.....|-||+-=|.+ | ++.+.|.|-|-..|+.+++..- ....||+||..++
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 446789999986653 3 6666999999999998886530 0135999997764
No 99
>PHA02862 5L protein; Provisional
Probab=78.10 E-value=2 Score=38.59 Aligned_cols=45 Identities=20% Similarity=0.467 Sum_probs=34.2
Q ss_pred ccccccccccccccccCCCCC-----cccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLH-----TFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgH-----tFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|-||++--.+.+. +|.. -.-..|+.+|+...+...|+.|+..+
T Consensus 3 diCWIC~~~~~e~~~--PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDERNN--FCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCCcc--cccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 368999987655543 5543 23679999999887778999999877
No 100
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=77.27 E-value=1.4 Score=32.26 Aligned_cols=39 Identities=28% Similarity=0.734 Sum_probs=25.7
Q ss_pred ccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
+.|.||.|...|.. .. ++.-|......+.....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-~~-------L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-SS-------LVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-HH-------HHHHHHhHCcCCCCCccCCCchh
Confidence 46899999995443 22 33446666555545578999974
No 101
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=74.97 E-value=2.3 Score=46.41 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=55.3
Q ss_pred hhhhcccccccccccccccccccccCCCCCcccHHHHHHH--hhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEK--LSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~--l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
+....+.--|.|||+..-+.-|..-..|.|.-|..-..-. -.+.....||+|.+.. ..+.+..|..+.+++..+-
T Consensus 298 i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~---~~e~l~iD~~~~~iL~~~~ 374 (636)
T KOG2169|consen 298 IATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAA---PFEGLIIDGYFLNILQSCQ 374 (636)
T ss_pred ceeccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccc---cccchhhhHHHHHHHhhcc
Confidence 3444566678999999988887776688887776554221 1122358899999765 7888999999999988875
Q ss_pred C
Q 017736 92 P 92 (367)
Q Consensus 92 p 92 (367)
.
T Consensus 375 ~ 375 (636)
T KOG2169|consen 375 A 375 (636)
T ss_pred C
Confidence 4
No 102
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=74.80 E-value=0.63 Score=36.71 Aligned_cols=40 Identities=30% Similarity=0.565 Sum_probs=22.5
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
++.||.|...|..- . +|.+|..|-..+... ..||.|..++
T Consensus 1 e~~CP~C~~~L~~~----~-~~~~C~~C~~~~~~~---a~CPdC~~~L 40 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----G-GHYHCEACQKDYKKE---AFCPDCGQPL 40 (70)
T ss_dssp --B-SSS-SBEEEE----T-TEEEETTT--EEEEE---EE-TTT-SB-
T ss_pred CCcCCCCCCccEEe----C-CEEECccccccceec---ccCCCcccHH
Confidence 46899999976532 2 788899998765533 5699999776
No 103
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=70.43 E-value=2.7 Score=42.16 Aligned_cols=49 Identities=16% Similarity=0.395 Sum_probs=36.9
Q ss_pred ccccccccccccccc---ccccccCCCCCcccHHHHHHHhhcCC-CCccccccc
Q 017736 18 TLEACMTCPLCNSLL---REATTISLCLHTFCRKCIYEKLSDEE-ADCCPVCNI 67 (367)
Q Consensus 18 ~Led~LtCpIC~~ll---~dPvtl~~CgHtFC~~CI~~~l~~~~-~~~CPvCR~ 67 (367)
.++..|+||+=.+.- +.|+.+ .|||..-..-+.+.-+++. .+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml-~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVML-ECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeee-eccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 467789999876654 457888 9999999999887655422 388999964
No 104
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=69.06 E-value=2.1 Score=37.89 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=30.0
Q ss_pred hhhhhcccc-ccccccccccccc--ccccCCCC------CcccHHHHHHHhh
Q 017736 13 KVKRETLEA-CMTCPLCNSLLRE--ATTISLCL------HTFCRKCIYEKLS 55 (367)
Q Consensus 13 ~v~~e~Led-~LtCpIC~~ll~d--Pvtl~~Cg------HtFC~~CI~~~l~ 55 (367)
++-.+.+.. .+.|.||++-+.+ -|....|| |-||..|+.+|-+
T Consensus 16 ~lf~~~w~~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 16 RLFNDQWPRCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred HHHHHHccccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 344444443 6789999998776 55444666 5699999999943
No 105
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.72 E-value=3.9 Score=42.83 Aligned_cols=75 Identities=28% Similarity=0.624 Sum_probs=51.6
Q ss_pred hhhccccccccccc-cccccccccc-CCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 15 KRETLEACMTCPLC-NSLLREATTI-SLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 15 ~~e~Led~LtCpIC-~~ll~dPvtl-~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
..-.+.++++|++| ...|.+...+ -.|+-+||..||...+.......|..|.. .-..+.+...+...+...+.
T Consensus 212 ~v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~-----~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 212 TVGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV-----LADDLLPPKTLRDTINRILA 286 (448)
T ss_pred HhccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc-----cccccCCchhhHHHHHHHHh
Confidence 44557889999999 7788887766 45788999999999887654444555542 23445566666666666655
Q ss_pred Cc
Q 017736 93 FK 94 (367)
Q Consensus 93 ~~ 94 (367)
..
T Consensus 287 ~~ 288 (448)
T KOG0314|consen 287 SG 288 (448)
T ss_pred hh
Confidence 43
No 106
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=2.5 Score=39.80 Aligned_cols=38 Identities=24% Similarity=0.607 Sum_probs=27.7
Q ss_pred ccccccccccccccCCCCC-cccHHHHHHHhhcCCCCccccccccc
Q 017736 25 CPLCNSLLREATTISLCLH-TFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 25 CpIC~~ll~dPvtl~~CgH-tFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
|-+|..--.. |.+.+|.| .+|..|-.. ...||+|+...
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES------LRICPICRSPK 199 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc------CccCCCCcChh
Confidence 8889886555 55559998 689999532 34599998643
No 107
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.82 E-value=5.9 Score=38.64 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=35.4
Q ss_pred cccccccccccccccc---cccCCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736 20 EACMTCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 20 ed~LtCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
...|+|||-.-.|..- +.+..|||.|-..-+.+.- ...|++|...+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~ 158 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQ 158 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCccc
Confidence 5679999988766543 2344899999998887643 456999998874
No 108
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=66.43 E-value=4.4 Score=34.17 Aligned_cols=48 Identities=27% Similarity=0.544 Sum_probs=31.4
Q ss_pred ccccccccccccccccc-------CCC---CCcccHHHHHHHhhc-------CCCCccccccccc
Q 017736 22 CMTCPLCNSLLREATTI-------SLC---LHTFCRKCIYEKLSD-------EEADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl-------~~C---gHtFC~~CI~~~l~~-------~~~~~CPvCR~~l 69 (367)
..+|..|..--.+..+. ..| .-.||..||...+.+ .....||.|+-..
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 45677777744444433 135 667999999877654 2347899998543
No 109
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=65.41 E-value=3.5 Score=26.32 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=5.4
Q ss_pred cccccccccc
Q 017736 24 TCPLCNSLLR 33 (367)
Q Consensus 24 tCpIC~~ll~ 33 (367)
+||-|...+.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 3666665443
No 110
>PLN02189 cellulose synthase
Probab=64.44 E-value=3.8 Score=46.85 Aligned_cols=46 Identities=24% Similarity=0.610 Sum_probs=34.2
Q ss_pred ccccccccccc-----ccccc-CCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLR-----EATTI-SLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~-----dPvtl-~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|.||.+.+- ++... -.|+--.|+.|. ++-+.+++..||.|++.+
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRY 86 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCch
Confidence 38999999743 23222 147777899998 666777888999999877
No 111
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=62.04 E-value=4.3 Score=29.19 Aligned_cols=40 Identities=20% Similarity=0.503 Sum_probs=24.6
Q ss_pred cccccccccc--ccccCCCCCc-----ccHHHHHHHhhcCCCCccccc
Q 017736 25 CPLCNSLLRE--ATTISLCLHT-----FCRKCIYEKLSDEEADCCPVC 65 (367)
Q Consensus 25 CpIC~~ll~d--Pvtl~~CgHt-----FC~~CI~~~l~~~~~~~CPvC 65 (367)
|-||++.-.+ |+.. +|.-. .-..|+.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~-pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLIS-PCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE--SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceec-ccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6678775442 3444 67532 367899999998777789887
No 112
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=61.91 E-value=7.7 Score=28.77 Aligned_cols=25 Identities=32% Similarity=0.806 Sum_probs=14.1
Q ss_pred CCCCcccHHHHHHHhhcCCCCcccccc
Q 017736 40 LCLHTFCRKCIYEKLSDEEADCCPVCN 66 (367)
Q Consensus 40 ~CgHtFC~~CI~~~l~~~~~~~CPvCR 66 (367)
.|++.||..|= .+..+..-.||-|.
T Consensus 26 ~C~~~FC~dCD--~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCD--VFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHH--HTTTTTS-SSSTT-
T ss_pred CCCCccccCcC--hhhhccccCCcCCC
Confidence 68999999994 34344456799884
No 113
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=61.32 E-value=4.8 Score=46.29 Aligned_cols=46 Identities=24% Similarity=0.689 Sum_probs=34.4
Q ss_pred ccccccccccc-----ccc-ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLR-----EAT-TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~-----dPv-tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|.||.+..- +|. ---+|+--.|+.|. ++-+.+++..||.|++.+
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCch
Confidence 48999998642 222 22258888899998 677777889999999876
No 114
>PLN02436 cellulose synthase A
Probab=61.19 E-value=4.7 Score=46.28 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=34.1
Q ss_pred ccccccccccc-----ccccc-CCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLR-----EATTI-SLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~-----dPvtl-~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|.||.+.+- ++... -.|+--.|+.|. ++-+.++...||.|++.+
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRY 88 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCch
Confidence 38999998642 23221 148878899998 666677888999999877
No 115
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.86 E-value=6.8 Score=31.28 Aligned_cols=41 Identities=32% Similarity=0.688 Sum_probs=26.2
Q ss_pred cccccccccc----cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 24 TCPLCNSLLR----EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 24 tCpIC~~ll~----dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.|.-|...|- ++.+- .-.||||..|....+. + .||.|.-.+
T Consensus 7 nCECCDrDLpp~s~dA~IC-tfEcTFCadCae~~l~--g--~CPnCGGel 51 (84)
T COG3813 7 NCECCDRDLPPDSTDARIC-TFECTFCADCAENRLH--G--LCPNCGGEL 51 (84)
T ss_pred CCcccCCCCCCCCCceeEE-EEeeehhHhHHHHhhc--C--cCCCCCchh
Confidence 3555665442 22221 2358999999988773 2 499998655
No 116
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=59.82 E-value=5.7 Score=39.13 Aligned_cols=43 Identities=28% Similarity=0.767 Sum_probs=33.6
Q ss_pred cccccccccccc----cccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 22 CMTCPLCNSLLR----EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 22 ~LtCpIC~~ll~----dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
.+.||||.+.+. .|..+ .|||+--..|+...... + ..||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~-~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVL-KCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCcc-CcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 355999999654 34455 89999889999988765 3 89999975
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=59.53 E-value=3.9 Score=45.48 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=30.9
Q ss_pred cccccccccccccccc---ccC---CCCCcccHHHHHHHhhcCC----CCccccccccc
Q 017736 21 ACMTCPLCNSLLREAT---TIS---LCLHTFCRKCIYEKLSDEE----ADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~dPv---tl~---~CgHtFC~~CI~~~l~~~~----~~~CPvCR~~l 69 (367)
+.-+|++|..-|.+|+ -+. .|+|.||..||..|..... ...|++|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3456777776665532 111 3999999999999876531 23467776444
No 118
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=59.43 E-value=5.4 Score=38.86 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=38.2
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVC 65 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvC 65 (367)
.++|||-...+.+|+.-..|||.|=+.=|..++.......||+-
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 47899999999999988899999999999999877556789984
No 119
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=58.64 E-value=9.2 Score=42.91 Aligned_cols=55 Identities=18% Similarity=0.445 Sum_probs=39.9
Q ss_pred hhhcccccccccccccccccccccC---CCCCcccHHHHHHHhhcC-----CCCccccccccc
Q 017736 15 KRETLEACMTCPLCNSLLREATTIS---LCLHTFCRKCIYEKLSDE-----EADCCPVCNIDL 69 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~---~CgHtFC~~CI~~~l~~~-----~~~~CPvCR~~l 69 (367)
....-...+.|-||.+.+..-..++ .|.|.|-..||..|-+.. ....||.|+...
T Consensus 184 i~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 184 IEQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred HHHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 3444466788999999876443333 378999999999997652 347899998543
No 120
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=57.95 E-value=5.9 Score=29.16 Aligned_cols=28 Identities=39% Similarity=0.910 Sum_probs=19.9
Q ss_pred CCC-CcccHHHHHHHhhcCCCCccccccccc
Q 017736 40 LCL-HTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 40 ~Cg-HtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.|. |-.|..|+...+.. +..||+|..++
T Consensus 17 ~C~dHYLCl~CLt~ml~~--s~~C~iC~~~L 45 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSR--SDRCPICGKPL 45 (50)
T ss_dssp E-SS-EEEHHHHHHT-SS--SSEETTTTEE-
T ss_pred eecchhHHHHHHHHHhcc--ccCCCcccCcC
Confidence 675 78899999988854 56799999876
No 121
>PLN02195 cellulose synthase A
Probab=57.33 E-value=6.4 Score=44.85 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=34.5
Q ss_pred ccccccccccc-----cccc-cCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLR-----EATT-ISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~-----dPvt-l~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|.||.+.+- +|.. --+|+--.|+.|. ++-+.+++..||.|++.+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Y 58 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPY 58 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcc
Confidence 47999998442 2322 2258888999998 677777889999999877
No 122
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=55.91 E-value=10 Score=45.22 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=33.0
Q ss_pred cccccccccccc--cccc-cccCCCCCcccHHHHHHHhhcC--------CCCccccccccc
Q 017736 20 EACMTCPLCNSL--LREA-TTISLCLHTFCRKCIYEKLSDE--------EADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~l--l~dP-vtl~~CgHtFC~~CI~~~l~~~--------~~~~CPvCR~~l 69 (367)
..+-.|-||... -.-| +.+ .|+|.|-..|..+.+... +-..||+|...+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL-~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQL-DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred ccCceEEEEehhhhCCCcceec-CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 344567777753 2234 455 999999999988776542 125799998665
No 123
>PLN02400 cellulose synthase
Probab=55.54 E-value=5.8 Score=45.63 Aligned_cols=47 Identities=23% Similarity=0.695 Sum_probs=34.4
Q ss_pred ccccccccccc-----cccc-cCCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736 23 MTCPLCNSLLR-----EATT-ISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 23 LtCpIC~~ll~-----dPvt-l~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
-.|.||.+..- +|.. --.|+--.|+.|. ++-+.+++..||.|++.+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 38999998642 2222 2257878899998 6666778889999998773
No 124
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.73 E-value=7 Score=38.90 Aligned_cols=29 Identities=24% Similarity=0.802 Sum_probs=22.1
Q ss_pred CCCcccHHHHHHHhhcC-----------CCCccccccccc
Q 017736 41 CLHTFCRKCIYEKLSDE-----------EADCCPVCNIDL 69 (367)
Q Consensus 41 CgHtFC~~CI~~~l~~~-----------~~~~CPvCR~~l 69 (367)
|....|+.|+-+|+... +...||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 55567899999997642 346799999876
No 125
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=51.73 E-value=7.7 Score=30.35 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=9.7
Q ss_pred cccHHHHHHHhhc
Q 017736 44 TFCRKCIYEKLSD 56 (367)
Q Consensus 44 tFC~~CI~~~l~~ 56 (367)
.||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999876
No 126
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=50.78 E-value=17 Score=29.39 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=19.3
Q ss_pred cccccccccccc-----cccc-cCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 22 CMTCPLCNSLLR-----EATT-ISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~-----dPvt-l~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.-.|.||.+-.- ++.. -..|+--.|+.|+.- -+..+...||.|++.+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRY 61 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCc
Confidence 457999998543 2221 124777789999864 3445778899999776
No 127
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.76 E-value=8.9 Score=44.04 Aligned_cols=48 Identities=27% Similarity=0.708 Sum_probs=35.0
Q ss_pred ccccccccccccc-----cccc-cCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLR-----EATT-ISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~-----dPvt-l~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..-.|.||.+..- +|.. --+|+--.|+.|. ++-+.+++..||.|++.+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCch
Confidence 3567999998642 2222 2258888999998 666667888999999876
No 128
>PRK04023 DNA polymerase II large subunit; Validated
Probab=50.29 E-value=12 Score=42.92 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=38.1
Q ss_pred ccccccccccccccccccCCCCC-----cccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736 21 ACMTCPLCNSLLREATTISLCLH-----TFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~CgH-----tFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
....|+-|......-..- .||. .||..|-.. .....||.|...+.......+.....+...++++
T Consensus 625 g~RfCpsCG~~t~~frCP-~CG~~Te~i~fCP~CG~~----~~~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~l 694 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCP-FCGTHTEPVYRCPRCGIE----VEEDECEKCGREPTPYSKRKIDLKELYDRALENL 694 (1121)
T ss_pred cCccCCCCCCcCCcccCC-CCCCCCCcceeCccccCc----CCCCcCCCCCCCCCccceEEecHHHHHHHHHHHh
Confidence 356799999886443333 5984 599999432 2235699999776433333333333344444433
No 129
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=48.77 E-value=8.9 Score=31.72 Aligned_cols=35 Identities=20% Similarity=0.797 Sum_probs=25.4
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|.||..-+.. =||.||..|... .+ .|.+|...+
T Consensus 45 ~~C~~CK~~v~q------~g~~YCq~CAYk----kG--iCamCGKki 79 (90)
T PF10235_consen 45 SKCKICKTKVHQ------PGAKYCQTCAYK----KG--ICAMCGKKI 79 (90)
T ss_pred cccccccccccc------CCCccChhhhcc----cC--cccccCCee
Confidence 368888875543 278899999653 23 499998766
No 130
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=48.07 E-value=15 Score=35.50 Aligned_cols=59 Identities=27% Similarity=0.293 Sum_probs=42.6
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccc--cccccCCCCCCCCCCChHH
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPV--CNIDLGCLPVEKLRPDHNL 83 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPv--CR~~l~~~~~~~lr~n~~L 83 (367)
+.+|||-++...-|+.-..|.|.|=+.-|..+++......||. |...+ ..+.+..|+.|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~---~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKE---VVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchhe---eccchhhhHHH
Confidence 3789998888888888779999999999999987555567886 54333 23334444444
No 131
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=47.35 E-value=12 Score=38.20 Aligned_cols=29 Identities=21% Similarity=0.701 Sum_probs=21.8
Q ss_pred CCCcccHHHHHHHhhcCC-----------CCccccccccc
Q 017736 41 CLHTFCRKCIYEKLSDEE-----------ADCCPVCNIDL 69 (367)
Q Consensus 41 CgHtFC~~CI~~~l~~~~-----------~~~CPvCR~~l 69 (367)
|.-..|..|+-+|+...+ ...||+||+.+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 445668899999986532 35799999887
No 132
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=46.84 E-value=11 Score=35.93 Aligned_cols=43 Identities=30% Similarity=0.666 Sum_probs=33.8
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
..|.+|..+...-+.--.|+-.+-..|+..+++. ...||.|.-
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhc
Confidence 4799999988766654467777889999999966 457999963
No 133
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.77 E-value=5.8 Score=39.55 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=39.5
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccc
Q 017736 18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNID 68 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~ 68 (367)
-..++-+|.||...+.-|...-.|+|-||.-|...+..-. ..||.|+..
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~--~~~~d~~~~ 149 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMG--NDCPDCRGK 149 (324)
T ss_pred ccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhh--hccchhhcC
Confidence 3456678999999999999987799999999998887653 348888743
No 134
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=4.4 Score=39.35 Aligned_cols=45 Identities=29% Similarity=0.654 Sum_probs=34.5
Q ss_pred ccccccccccc------cccccCC-------CCCcccHHHHHHHhhcCCCCcccccccc
Q 017736 23 MTCPLCNSLLR------EATTISL-------CLHTFCRKCIYEKLSDEEADCCPVCNID 68 (367)
Q Consensus 23 LtCpIC~~ll~------dPvtl~~-------CgHtFC~~CI~~~l~~~~~~~CPvCR~~ 68 (367)
-.|.||...+. .|..+.. |||+.|..|+...+...+ ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 45888887665 3555523 999999999999887755 789999853
No 135
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.14 E-value=10 Score=38.99 Aligned_cols=35 Identities=26% Similarity=0.570 Sum_probs=24.9
Q ss_pred cccccccccccc-----cccccCCCCCcccHHHHHHHhhcC
Q 017736 22 CMTCPLCNSLLR-----EATTISLCLHTFCRKCIYEKLSDE 57 (367)
Q Consensus 22 ~LtCpIC~~ll~-----dPvtl~~CgHtFC~~CI~~~l~~~ 57 (367)
-..||.|...+. .-++- .|||-||+.|...|...+
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHN 345 (384)
T ss_pred cCcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCC
Confidence 345777776553 34555 599999999998877553
No 136
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.96 E-value=17 Score=33.85 Aligned_cols=30 Identities=23% Similarity=0.586 Sum_probs=23.7
Q ss_pred CCCCcccHHHHHHHhhcC----CC-----Cccccccccc
Q 017736 40 LCLHTFCRKCIYEKLSDE----EA-----DCCPVCNIDL 69 (367)
Q Consensus 40 ~CgHtFC~~CI~~~l~~~----~~-----~~CPvCR~~l 69 (367)
.||..|-.-|+..|++.- ++ -.||.|..++
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 699999999999998752 11 3599998776
No 137
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=41.70 E-value=19 Score=27.30 Aligned_cols=43 Identities=30% Similarity=0.719 Sum_probs=27.8
Q ss_pred cccccccccccccc-ccCCCC--CcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREAT-TISLCL--HTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPv-tl~~Cg--HtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.|..|...|..-. ...-|. .|||..|....+. ..||-|.-.|
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~----~~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN----GVCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc----CcCcCCCCcc
Confidence 35777777554221 111254 4899999998873 2599998655
No 138
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=40.33 E-value=9.9 Score=40.21 Aligned_cols=52 Identities=25% Similarity=0.503 Sum_probs=28.0
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHHHHhhcC----C-----C-CcccccccccC
Q 017736 19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE----E-----A-DCCPVCNIDLG 70 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~----~-----~-~~CPvCR~~l~ 70 (367)
|...+.|..|+.+-..--+..+=.-.||-.|+...=..+ + + +.||.|...|.
T Consensus 2 l~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred cccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 456677888877643211111223357888875542211 1 1 56888876653
No 139
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.10 E-value=27 Score=34.27 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=59.8
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736 18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF 93 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~ 93 (367)
.+.+.+.|.|-++++.+|+.+ +-|-+|=+.=|.++++..+.+ =|+-|.++ ....+.+|..|...|..|...
T Consensus 207 Evpd~lcgkIt~el~~~pvi~-psgIty~ra~I~Ehl~rvghf-dpvtr~~L---te~q~ipN~alkevIa~fl~~ 277 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVIT-PSGITYDRADIEEHLQRVGHF-DPVTRWPL---TEYQLIPNLALKEVIAAFLKE 277 (284)
T ss_pred cccchhhhhhhHHhhcCCccC-ccccchhHHHHHHHHHHhccC-CchhcccC---CHHhhccchHHHHHHHHHHHh
Confidence 466778889999999999999 999999999999999876653 57778777 567789999999999998653
No 140
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.01 E-value=19 Score=30.91 Aligned_cols=42 Identities=26% Similarity=0.705 Sum_probs=27.3
Q ss_pred ccccccccccccccc-------------cCCCCCcccHHHHHHHhhcCCCCcccccc
Q 017736 23 MTCPLCNSLLREATT-------------ISLCLHTFCRKCIYEKLSDEEADCCPVCN 66 (367)
Q Consensus 23 LtCpIC~~ll~dPvt-------------l~~CgHtFC~~CI~~~l~~~~~~~CPvCR 66 (367)
..|--|+..|.++.. -..|.+.||..|=. +..+....||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~--fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDV--FVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccch--hhhhhccCCcCCC
Confidence 459999988875421 22689999999843 2222345699885
No 141
>PF14353 CpXC: CpXC protein
Probab=37.23 E-value=25 Score=29.93 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=24.0
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcCC--CCccccccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEE--ADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~--~~~CPvCR~~l 69 (367)
+++||-|...|.-.+-+ .-.-..=..=... +..+. ...||.|+..+
T Consensus 1 ~itCP~C~~~~~~~v~~-~I~~~~~p~l~e~-il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWT-SINADEDPELKEK-ILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEe-EEcCcCCHHHHHH-HHcCCcCEEECCCCCCce
Confidence 47899999877654433 1111111112222 22222 36899998765
No 142
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=36.39 E-value=15 Score=40.89 Aligned_cols=66 Identities=18% Similarity=0.477 Sum_probs=40.2
Q ss_pred ccccccccccccccccccccCCCC----------CcccHHHHHHHhhcCCCCcccccccccCCCCCCCC-CCChHHHHHH
Q 017736 19 LEACMTCPLCNSLLREATTISLCL----------HTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKL-RPDHNLQDIR 87 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPvtl~~Cg----------HtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~l-r~n~~L~~li 87 (367)
....+.|..|..++.-| .|. ..+|..|-.+. .-...||.|.... ...+ .--..+.+.+
T Consensus 432 ys~~l~C~~Cg~v~~Cp----~Cd~~lt~H~~~~~L~CH~Cg~~~---~~p~~Cp~Cgs~~----L~~~G~GterieeeL 500 (730)
T COG1198 432 YAPLLLCRDCGYIAECP----NCDSPLTLHKATGQLRCHYCGYQE---PIPQSCPECGSEH----LRAVGPGTERIEEEL 500 (730)
T ss_pred ccceeecccCCCcccCC----CCCcceEEecCCCeeEeCCCCCCC---CCCCCCCCCCCCe----eEEecccHHHHHHHH
Confidence 34456777777777655 332 23588886541 1236799998542 1111 2235678889
Q ss_pred HHHCCCch
Q 017736 88 AKIFPFKR 95 (367)
Q Consensus 88 ~klfp~~~ 95 (367)
..+||..+
T Consensus 501 ~~~FP~~r 508 (730)
T COG1198 501 KRLFPGAR 508 (730)
T ss_pred HHHCCCCc
Confidence 99999764
No 143
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.10 E-value=22 Score=39.46 Aligned_cols=51 Identities=24% Similarity=0.426 Sum_probs=36.6
Q ss_pred cccccccccccccccccc---------ccCCCCCcc--------------------cHHHHHHHhhcC------CCCccc
Q 017736 19 LEACMTCPLCNSLLREAT---------TISLCLHTF--------------------CRKCIYEKLSDE------EADCCP 63 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPv---------tl~~CgHtF--------------------C~~CI~~~l~~~------~~~~CP 63 (367)
+.|.-+|+-|+..+.||- .-+.||-.| |..|..++-... +...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 455678999999888772 222688888 999998875432 346899
Q ss_pred cccccc
Q 017736 64 VCNIDL 69 (367)
Q Consensus 64 vCR~~l 69 (367)
.|.-.+
T Consensus 178 ~CGP~~ 183 (750)
T COG0068 178 KCGPHL 183 (750)
T ss_pred ccCCCe
Confidence 998544
No 144
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=33.86 E-value=52 Score=37.25 Aligned_cols=50 Identities=18% Similarity=0.512 Sum_probs=37.4
Q ss_pred ccccccccccc--ccccccccCCCCCc-----ccHHHHHHHhhcCCCCcccccccccC
Q 017736 20 EACMTCPLCNS--LLREATTISLCLHT-----FCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 20 ed~LtCpIC~~--ll~dPvtl~~CgHt-----FC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
++.-+|.||.. .-.+|..- +|..+ ..+.|+.+|+...+..+|-+|+.++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFH-PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcc-cccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 45678999986 33466665 66543 36799999998877789999987653
No 145
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.54 E-value=27 Score=38.53 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=34.0
Q ss_pred cccccccccccccccCCCCC-cccHHHHHHHhhcCC----CCccccccccc
Q 017736 24 TCPLCNSLLREATTISLCLH-TFCRKCIYEKLSDEE----ADCCPVCNIDL 69 (367)
Q Consensus 24 tCpIC~~ll~dPvtl~~CgH-tFC~~CI~~~l~~~~----~~~CPvCR~~l 69 (367)
.|+||-.-+.-+..- .||| ..|..|..+...... ...||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccc-cccccccchhhhhhhhhhcccccccccCcccccce
Confidence 488988876666666 8999 899999988755443 35689999754
No 146
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=32.41 E-value=20 Score=37.49 Aligned_cols=37 Identities=22% Similarity=0.554 Sum_probs=25.7
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD 56 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~ 56 (367)
.++|+|..|..-|.-.-.-..=+..||..|.+..+..
T Consensus 300 v~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlek 336 (468)
T KOG1701|consen 300 VQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEK 336 (468)
T ss_pred ccceehHhhhhhhccccccccCCcccchHHHHHHHHH
Confidence 4689999999877644333245667888887776643
No 147
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=32.08 E-value=22 Score=34.07 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=14.7
Q ss_pred cccccccccccc--cccccCCCCCcc
Q 017736 22 CMTCPLCNSLLR--EATTISLCLHTF 45 (367)
Q Consensus 22 ~LtCpIC~~ll~--dPvtl~~CgHtF 45 (367)
.|.||+|...|. +......++|+|
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCC
Confidence 378999999774 222222346665
No 148
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=32.08 E-value=5.6 Score=33.88 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=29.6
Q ss_pred cccccccccccc----ccccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 21 ACMTCPLCNSLL----REATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 21 d~LtCpIC~~ll----~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
..-.|.+|...| .....-..|.|.+|..|-.. ........|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 567899998743 23444447999999999654 22234577999964
No 149
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=31.16 E-value=15 Score=36.12 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.8
Q ss_pred CCccccccccc
Q 017736 59 ADCCPVCNIDL 69 (367)
Q Consensus 59 ~~~CPvCR~~l 69 (367)
-+.||.|+..|
T Consensus 215 PF~C~hC~kAF 225 (279)
T KOG2462|consen 215 PFSCPHCGKAF 225 (279)
T ss_pred CccCCcccchh
Confidence 37899998776
No 150
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.92 E-value=23 Score=29.52 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=12.3
Q ss_pred CcccHHHHHHHhhc
Q 017736 43 HTFCRKCIYEKLSD 56 (367)
Q Consensus 43 HtFC~~CI~~~l~~ 56 (367)
-.||+.|+..|+..
T Consensus 41 AgFCRNCLs~Wy~e 54 (104)
T COG3492 41 AGFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 46999999999976
No 151
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.12 E-value=12 Score=36.69 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=20.5
Q ss_pred cccccccccccccccccCC----CCCcccHHHHHHHhhcCCCCccccccc
Q 017736 22 CMTCPLCNSLLREATTISL----CLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~----CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
.-.||||...-.-.+.... -.|-+|..|-.+|-.. -..||.|..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~--R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV--RIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec--CCCCcCCCC
Confidence 4689999986554444422 2356799999888643 346999964
No 152
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.96 E-value=35 Score=22.60 Aligned_cols=9 Identities=44% Similarity=1.062 Sum_probs=6.7
Q ss_pred CCccccccc
Q 017736 59 ADCCPVCNI 67 (367)
Q Consensus 59 ~~~CPvCR~ 67 (367)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 357999974
No 153
>PRK00420 hypothetical protein; Validated
Probab=28.38 E-value=29 Score=29.80 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=16.1
Q ss_pred chHhhhhhhhhhhhhhcccccccccccccccc
Q 017736 2 DTVRTTARHVVKVKRETLEACMTCPLCNSLLR 33 (367)
Q Consensus 2 ~~~~~ma~~~v~v~~e~Led~LtCpIC~~ll~ 33 (367)
+....|+..+.+ -..++ .-.||+|...|.
T Consensus 6 ~~~k~~a~~Ll~-Ga~ml--~~~CP~Cg~pLf 34 (112)
T PRK00420 6 DIVKKAAELLLK-GAKML--SKHCPVCGLPLF 34 (112)
T ss_pred HHHHHHHHHHHh-HHHHc--cCCCCCCCCcce
Confidence 455666654443 22322 278998886554
No 154
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=27.97 E-value=41 Score=34.01 Aligned_cols=45 Identities=22% Similarity=0.463 Sum_probs=32.2
Q ss_pred ccccccccccc---cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
-.||||...+. ....-.+|++..|..|+..... +...||.||.++
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~--~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD--GDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc--cCCCCCccCCcc
Confidence 46999999662 2233336888889999887664 346799999765
No 155
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.86 E-value=30 Score=40.77 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=39.9
Q ss_pred cccccccccccccccccCCCCCc-----ccHHHHHHHhhc-CCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736 22 CMTCPLCNSLLREATTISLCLHT-----FCRKCIYEKLSD-EEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHt-----FC~~CI~~~l~~-~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
.+.||-|.........- .||+. +|..|=...-.. .+...||.|..++.......+.....+...++.+
T Consensus 667 ~rkCPkCG~~t~~~fCP-~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 667 RRRCPSCGTETYENRCP-DCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEECCCCCCccccccCc-ccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 58899999865554333 68854 488886543211 1134799999877443434444444444444444
No 156
>PLN02248 cellulose synthase-like protein
Probab=27.69 E-value=47 Score=38.70 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=25.4
Q ss_pred cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 36 TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 36 vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+.-.+|++..|+.|....+...+ .||-|..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 176 (1135)
T PLN02248 145 LLPCECGFKICRDCYIDAVKSGG--ICPGCKEPY 176 (1135)
T ss_pred CCcccccchhHHhHhhhhhhcCC--CCCCCcccc
Confidence 33347888999999999987744 599998776
No 157
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=24.74 E-value=44 Score=23.85 Aligned_cols=34 Identities=18% Similarity=0.596 Sum_probs=23.7
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHH
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEK 53 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~ 53 (367)
.+.|.|..|...|........=+..||..|..+.
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 4678899999888765322245677888887653
No 158
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=24.32 E-value=43 Score=37.23 Aligned_cols=50 Identities=24% Similarity=0.518 Sum_probs=35.7
Q ss_pred ccccccccccccccccc---------ccCCCCCcc--------------------cHHHHHHHhhcC------CCCcccc
Q 017736 20 EACMTCPLCNSLLREAT---------TISLCLHTF--------------------CRKCIYEKLSDE------EADCCPV 64 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPv---------tl~~CgHtF--------------------C~~CI~~~l~~~------~~~~CPv 64 (367)
.+.-+|+-|+..+.+|- .-+.||-.| |..|..++.... ....||.
T Consensus 66 pD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~ 145 (711)
T TIGR00143 66 ADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPR 145 (711)
T ss_pred CchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCC
Confidence 35667999999888873 222688777 999999975432 2257999
Q ss_pred ccccc
Q 017736 65 CNIDL 69 (367)
Q Consensus 65 CR~~l 69 (367)
|.-.+
T Consensus 146 Cgp~l 150 (711)
T TIGR00143 146 CGPQL 150 (711)
T ss_pred CCcEE
Confidence 98655
No 159
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF15616 TerY-C: TerY-C metal binding domain
Probab=23.95 E-value=38 Score=29.90 Aligned_cols=49 Identities=29% Similarity=0.493 Sum_probs=37.1
Q ss_pred hhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 12 v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+|.-+.|...=.||-|...+.=.+- .||+.||.. ..+...||-|....
T Consensus 67 ~~vntseL~g~PgCP~CGn~~~fa~C--~CGkl~Ci~-------g~~~~~CPwCg~~g 115 (131)
T PF15616_consen 67 QKVNTSELIGAPGCPHCGNQYAFAVC--GCGKLFCID-------GEGEVTCPWCGNEG 115 (131)
T ss_pred cEEehHHhcCCCCCCCCcChhcEEEe--cCCCEEEeC-------CCCCEECCCCCCee
Confidence 36777888888899999998765554 699999852 23457899998654
No 161
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.17 E-value=38 Score=27.54 Aligned_cols=29 Identities=31% Similarity=0.659 Sum_probs=17.5
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNID 68 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~ 68 (367)
+.||||.--+.--+.. ..+...||.||-.
T Consensus 2 llCP~C~v~l~~~~rs-----------------~vEiD~CPrCrGV 30 (88)
T COG3809 2 LLCPICGVELVMSVRS-----------------GVEIDYCPRCRGV 30 (88)
T ss_pred cccCcCCceeeeeeec-----------------CceeeeCCccccE
Confidence 5689998766532221 1234569999843
No 162
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=22.93 E-value=40 Score=26.74 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=6.4
Q ss_pred cccccccccc
Q 017736 23 MTCPLCNSLL 32 (367)
Q Consensus 23 LtCpIC~~ll 32 (367)
+.||.|....
T Consensus 2 m~CP~Cg~~a 11 (72)
T PRK09678 2 FHCPLCQHAA 11 (72)
T ss_pred ccCCCCCCcc
Confidence 4677777644
No 163
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.90 E-value=45 Score=24.28 Aligned_cols=9 Identities=56% Similarity=1.671 Sum_probs=5.3
Q ss_pred ccccccccc
Q 017736 61 CCPVCNIDL 69 (367)
Q Consensus 61 ~CPvCR~~l 69 (367)
.||+|..+|
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 799999887
No 164
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.49 E-value=51 Score=23.71 Aligned_cols=33 Identities=21% Similarity=0.550 Sum_probs=21.4
Q ss_pred ccccccccccc---cccccCCCCCcccHHHHHHHhh
Q 017736 23 MTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLS 55 (367)
Q Consensus 23 LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~ 55 (367)
..|.+|..-|. ....-..||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 35778876443 2222236999999999876543
No 165
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.20 E-value=31 Score=25.06 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=20.5
Q ss_pred ccccc--ccccccccc------cccC-CCCCcccHHHHHHHh
Q 017736 22 CMTCP--LCNSLLREA------TTIS-LCLHTFCRKCIYEKL 54 (367)
Q Consensus 22 ~LtCp--IC~~ll~dP------vtl~-~CgHtFC~~CI~~~l 54 (367)
..-|| -|..++... ...- .|+|.||..|...|-
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 34588 776654332 2332 578999999976653
No 166
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.17 E-value=56 Score=36.70 Aligned_cols=41 Identities=22% Similarity=0.573 Sum_probs=28.1
Q ss_pred cccccccccccccc-cccCCCCCcccHHHHHHHhhcCCCCcccc
Q 017736 22 CMTCPLCNSLLREA-TTISLCLHTFCRKCIYEKLSDEEADCCPV 64 (367)
Q Consensus 22 ~LtCpIC~~ll~dP-vtl~~CgHtFC~~CI~~~l~~~~~~~CPv 64 (367)
-|.|.+|.--.+-- ..--.|+|.--..|+.+|++.+. .||.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd--~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD--VCPS 1069 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC--cCCC
Confidence 35577776544322 22225999999999999998865 4876
No 167
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=22.08 E-value=63 Score=28.46 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=22.2
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.-...+.||-|...|.- .=........+.+.||.|+..+
T Consensus 93 ~e~~~~~Y~Cp~C~~~y~~-------------~ea~~~~d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 93 DETNNAYYKCPNCQSKYTF-------------LEANQLLDMDGTFTCPRCGEEL 133 (147)
T ss_pred cccCCcEEECcCCCCEeeH-------------HHHHHhcCCCCcEECCCCCCEE
Confidence 3334567788877654431 1111111122448999999776
No 168
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.08 E-value=44 Score=30.37 Aligned_cols=24 Identities=29% Similarity=0.840 Sum_probs=18.6
Q ss_pred CCcccHHHHHHHhhcCCCCcccccccccC
Q 017736 42 LHTFCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 42 gHtFC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
.+.||..|=.+-+.. ||.|..++.
T Consensus 27 ~~~fC~kCG~~tI~~-----Cp~C~~~Ir 50 (158)
T PF10083_consen 27 REKFCSKCGAKTITS-----CPNCSTPIR 50 (158)
T ss_pred HHHHHHHhhHHHHHH-----CcCCCCCCC
Confidence 367999998877754 999987764
No 169
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.98 E-value=1.1e+02 Score=35.07 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=60.5
Q ss_pred hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCchh
Q 017736 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRR 96 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~~~ 96 (367)
.++.+++.=|+=..++.+||.+..=+++-|+.=|.+++... ..=|.||.++ ....+.+|..+..-+..|...++.
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~--~tdPFNR~pL---t~d~v~pn~eLK~kI~~~~~ek~~ 939 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD--CTDPFNREPL---TEDMVSPNEELKAKIRCWIKEKRN 939 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC--CCCccccccC---chhhcCCCHHHHHHHHHHHHHhhh
Confidence 34666777788888999999995599999999999998653 2359999888 577788999999999888766543
No 170
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=21.57 E-value=38 Score=34.90 Aligned_cols=32 Identities=19% Similarity=0.507 Sum_probs=22.9
Q ss_pred cccccccccccccc-cccccCCCCCcccHHHHHH
Q 017736 20 EACMTCPLCNSLLR-EATTISLCLHTFCRKCIYE 52 (367)
Q Consensus 20 ed~LtCpIC~~ll~-dPvtl~~CgHtFC~~CI~~ 52 (367)
...+.|.-|.+.-. .-..+ +||..||+.||.-
T Consensus 37 ~gk~~C~RC~~~~~~~~~~l-p~~~~YCr~Cl~m 69 (441)
T COG4098 37 NGKYRCNRCGNTHIELFAKL-PCGCLYCRNCLMM 69 (441)
T ss_pred cCcEEehhcCCcchhhhccc-ccceEeehhhhhc
Confidence 34578999995433 33344 8999999999863
No 171
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=21.29 E-value=32 Score=38.96 Aligned_cols=44 Identities=27% Similarity=0.495 Sum_probs=0.0
Q ss_pred cccccccccccccccccCCCC-C----cccHHHHHHHhhcCCCCcccccccccC
Q 017736 22 CMTCPLCNSLLREATTISLCL-H----TFCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~Cg-H----tFC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
...||-|...-.....- .|| | .+|..|-...- ...||.|.....
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp-~CG~~T~~~~~Cp~C~~~~~----~~~C~~C~~~~~ 703 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCP-ECGSHTEPVYVCPDCGIEVE----EDECPKCGRETT 703 (900)
T ss_dssp ------------------------------------------------------
T ss_pred cccCcccCCcchhhcCc-ccCCccccceeccccccccC----ccccccccccCc
Confidence 46799999876555444 587 3 37999987643 237999987653
No 172
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.68 E-value=61 Score=30.83 Aligned_cols=23 Identities=26% Similarity=0.857 Sum_probs=17.7
Q ss_pred cccccccccccccccCCCCCcccHHHHHHHhh
Q 017736 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLS 55 (367)
Q Consensus 24 tCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~ 55 (367)
.|+||. . ...+-||..|+...+.
T Consensus 1 ~C~iC~--------~-~~~~~~C~~C~~~~L~ 23 (302)
T PF10186_consen 1 QCPICH--------N-SRRRFYCANCVNNRLL 23 (302)
T ss_pred CCCCCC--------C-CCCCeECHHHHHHHHH
Confidence 499999 2 5667799999987654
No 173
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.28 E-value=40 Score=29.94 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=13.6
Q ss_pred ccccccccccccCCCCCcccHH
Q 017736 27 LCNSLLREATTISLCLHTFCRK 48 (367)
Q Consensus 27 IC~~ll~dPvtl~~CgHtFC~~ 48 (367)
||+.--.. |+-.+|||.||..
T Consensus 62 i~qs~~~r-v~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKR-VIRCECGHSFGDY 82 (165)
T ss_pred EEeccccc-EEEEeccccccCh
Confidence 45554334 5555899999974
Done!