Query 017736
Match_columns 367
No_of_seqs 254 out of 1391
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 3.5E-15 1.2E-19 118.9 5.3 75 15-92 6-81 (92)
2 3fl2_A E3 ubiquitin-protein li 99.5 4.8E-15 1.6E-19 124.8 6.2 76 16-95 46-121 (124)
3 1t1h_A Gspef-atpub14, armadill 99.5 5.8E-15 2E-19 114.2 4.1 70 17-91 3-72 (78)
4 2y43_A E3 ubiquitin-protein li 99.5 1.6E-14 5.4E-19 116.9 4.4 87 1-92 1-87 (99)
5 2ckl_A Polycomb group ring fin 99.5 1.6E-14 5.5E-19 118.8 4.4 83 11-95 4-87 (108)
6 1z6u_A NP95-like ring finger p 99.5 4.3E-14 1.5E-18 123.8 7.0 76 15-94 71-146 (150)
7 2kre_A Ubiquitin conjugation f 99.5 2.2E-14 7.6E-19 117.8 4.6 74 15-94 22-95 (100)
8 2kr4_A Ubiquitin conjugation f 99.5 2.3E-14 7.9E-19 114.1 4.4 73 15-93 7-79 (85)
9 1wgm_A Ubiquitin conjugation f 99.5 4.1E-14 1.4E-18 115.8 5.2 72 16-93 16-88 (98)
10 2yu4_A E3 SUMO-protein ligase 99.4 3.3E-14 1.1E-18 115.0 4.1 74 19-95 4-84 (94)
11 2ckl_B Ubiquitin ligase protei 99.4 2.7E-14 9.4E-19 125.8 2.6 84 14-100 46-129 (165)
12 1jm7_B BARD1, BRCA1-associated 99.4 9.1E-14 3.1E-18 116.1 3.9 73 13-92 13-85 (117)
13 3lrq_A E3 ubiquitin-protein li 99.4 9.6E-14 3.3E-18 113.2 3.4 75 12-90 12-86 (100)
14 1jm7_A BRCA1, breast cancer ty 99.4 2.2E-13 7.5E-18 111.8 4.0 86 1-91 1-87 (112)
15 2c2l_A CHIP, carboxy terminus 99.4 1.9E-13 6.4E-18 127.7 4.0 71 18-93 204-274 (281)
16 2egp_A Tripartite motif-contai 99.4 2.4E-14 8.3E-19 110.5 -1.7 65 16-84 6-75 (79)
17 3l11_A E3 ubiquitin-protein li 99.4 6.4E-14 2.2E-18 116.3 0.6 78 16-95 9-90 (115)
18 2yur_A Retinoblastoma-binding 99.3 5.2E-13 1.8E-17 102.8 4.3 54 15-69 8-62 (74)
19 2ecw_A Tripartite motif-contai 99.3 1.1E-13 3.6E-18 107.6 0.0 67 15-85 12-82 (85)
20 2ecv_A Tripartite motif-contai 99.3 1.4E-13 4.9E-18 106.9 0.4 67 15-85 12-82 (85)
21 2f42_A STIP1 homology and U-bo 99.3 6.4E-13 2.2E-17 120.1 4.7 71 16-91 100-170 (179)
22 4ayc_A E3 ubiquitin-protein li 99.3 1.3E-12 4.4E-17 112.2 4.6 68 16-91 47-114 (138)
23 2djb_A Polycomb group ring fin 99.3 2.1E-12 7.1E-17 98.7 4.5 54 14-69 7-60 (72)
24 2csy_A Zinc finger protein 183 99.3 1.7E-12 5.7E-17 101.3 3.8 61 17-84 10-70 (81)
25 3htk_C E3 SUMO-protein ligase 99.3 1.7E-12 5.8E-17 123.5 3.4 74 14-90 173-248 (267)
26 2ysl_A Tripartite motif-contai 99.2 3.9E-12 1.3E-16 96.7 4.4 54 15-69 13-67 (73)
27 3knv_A TNF receptor-associated 99.2 1.5E-12 5.1E-17 113.0 2.0 80 9-90 18-103 (141)
28 3hct_A TNF receptor-associated 99.2 2.4E-12 8.4E-17 107.5 3.2 72 15-91 11-82 (118)
29 2ecy_A TNF receptor-associated 99.2 5.5E-12 1.9E-16 94.6 4.7 52 16-69 9-60 (66)
30 2ct2_A Tripartite motif protei 99.2 1.9E-12 6.6E-17 101.6 2.2 56 14-70 7-67 (88)
31 2ysj_A Tripartite motif-contai 99.2 8.2E-12 2.8E-16 92.7 3.7 50 15-65 13-63 (63)
32 1rmd_A RAG1; V(D)J recombinati 99.2 1.1E-11 3.9E-16 102.8 3.9 70 16-90 17-87 (116)
33 2ecj_A Tripartite motif-contai 99.1 2.3E-11 7.7E-16 88.3 3.9 50 15-65 8-58 (58)
34 3hcs_A TNF receptor-associated 99.1 2.5E-11 8.5E-16 107.2 3.2 72 15-91 11-82 (170)
35 2d8t_A Dactylidin, ring finger 99.1 2.7E-11 9.1E-16 92.2 2.8 49 18-69 11-59 (71)
36 3ng2_A RNF4, snurf, ring finge 99.1 5.4E-11 1.9E-15 89.7 3.6 48 19-69 7-61 (71)
37 1g25_A CDK-activating kinase a 99.1 4.4E-11 1.5E-15 89.4 3.0 47 21-69 2-53 (65)
38 2ea6_A Ring finger protein 4; 99.1 5.4E-11 1.8E-15 88.9 2.8 51 16-69 9-66 (69)
39 1e4u_A Transcriptional repress 99.0 3.5E-10 1.2E-14 88.8 5.6 51 17-69 6-60 (78)
40 2xeu_A Ring finger protein 4; 99.0 1.4E-10 4.8E-15 85.4 2.4 46 21-69 2-54 (64)
41 1bor_A Transcription factor PM 99.0 1.1E-10 3.9E-15 85.3 1.1 44 20-69 4-47 (56)
42 2ect_A Ring finger protein 126 99.0 2.6E-10 9E-15 87.8 3.2 52 16-69 9-62 (78)
43 2ecn_A Ring finger protein 141 99.0 1.9E-10 6.5E-15 86.8 2.3 51 16-70 9-59 (70)
44 1chc_A Equine herpes virus-1 r 98.9 3.9E-10 1.3E-14 84.5 2.7 48 20-69 3-50 (68)
45 1iym_A EL5; ring-H2 finger, ub 98.9 5.2E-10 1.8E-14 80.4 2.9 49 19-69 2-53 (55)
46 2l0b_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 90.4 2.0 49 18-69 36-87 (91)
47 2ecm_A Ring finger and CHY zin 98.9 6E-10 2.1E-14 80.0 2.7 46 21-69 4-53 (55)
48 2kiz_A E3 ubiquitin-protein li 98.9 1E-09 3.5E-14 82.5 3.2 50 17-69 9-61 (69)
49 4ic3_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 86.3 1.5 48 15-69 17-65 (74)
50 2ep4_A Ring finger protein 24; 98.8 9.1E-10 3.1E-14 83.9 2.7 52 16-69 9-62 (74)
51 1v87_A Deltex protein 2; ring- 98.8 1.1E-09 3.8E-14 90.2 3.5 50 21-70 24-93 (114)
52 4ap4_A E3 ubiquitin ligase RNF 98.8 8.6E-10 3E-14 91.9 2.8 48 19-69 4-58 (133)
53 1x4j_A Ring finger protein 38; 98.8 1E-09 3.5E-14 84.1 2.3 48 19-69 20-70 (75)
54 2ecg_A Baculoviral IAP repeat- 98.8 2.1E-09 7.2E-14 82.9 2.2 47 16-69 19-66 (75)
55 2bay_A PRE-mRNA splicing facto 98.7 5.3E-09 1.8E-13 78.4 1.4 46 22-69 3-48 (61)
56 2yho_A E3 ubiquitin-protein li 98.6 4.2E-09 1.4E-13 82.5 0.2 48 16-70 12-60 (79)
57 2y1n_A E3 ubiquitin-protein li 98.6 1.4E-08 4.7E-13 101.6 3.8 51 17-69 327-377 (389)
58 2ecl_A Ring-box protein 2; RNF 98.6 1.5E-08 5.1E-13 79.3 3.0 47 21-69 14-74 (81)
59 1wim_A KIAA0161 protein; ring 98.6 6.6E-09 2.2E-13 83.2 -0.3 48 21-68 4-61 (94)
60 4ap4_A E3 ubiquitin ligase RNF 98.5 2.6E-08 8.9E-13 82.8 2.7 47 20-69 70-123 (133)
61 3t6p_A Baculoviral IAP repeat- 98.4 3.8E-08 1.3E-12 97.1 0.7 47 16-69 289-336 (345)
62 3dpl_R Ring-box protein 1; ubi 98.4 1.1E-07 3.7E-12 78.8 3.4 47 21-69 36-99 (106)
63 2vje_A E3 ubiquitin-protein li 98.3 1.7E-07 5.8E-12 70.3 2.2 48 20-69 6-55 (64)
64 2ea5_A Cell growth regulator w 98.3 2.6E-07 9E-12 70.3 2.3 43 20-69 13-56 (68)
65 2vje_B MDM4 protein; proto-onc 98.3 3.2E-07 1.1E-11 68.6 2.5 48 20-69 5-54 (63)
66 4a0k_B E3 ubiquitin-protein li 98.2 2.5E-07 8.6E-12 78.1 0.1 46 22-69 48-110 (117)
67 2d8s_A Cellular modulator of i 98.1 1.4E-06 4.6E-11 68.6 3.8 49 20-69 13-68 (80)
68 2ct0_A Non-SMC element 1 homol 97.8 2.8E-05 9.4E-10 60.5 5.2 49 21-69 14-62 (74)
69 3vk6_A E3 ubiquitin-protein li 97.5 5.3E-05 1.8E-09 62.2 3.1 45 24-69 3-47 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00037 1.3E-08 51.7 3.3 49 20-69 4-57 (60)
71 3m62_A Ubiquitin conjugation f 96.7 0.00076 2.6E-08 74.0 3.4 74 16-95 885-959 (968)
72 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.00045 1.5E-08 68.2 1.0 51 20-70 306-372 (381)
73 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0016 5.5E-08 52.0 2.0 33 21-54 2-37 (101)
74 3nw0_A Non-structural maintena 95.8 0.0085 2.9E-07 55.9 5.2 49 21-69 179-227 (238)
75 3i2d_A E3 SUMO-protein ligase 94.6 0.019 6.6E-07 56.9 3.6 72 16-90 243-316 (371)
76 4fo9_A E3 SUMO-protein ligase 94.0 0.029 1E-06 55.4 3.5 73 15-90 208-282 (360)
77 2cs3_A Protein C14ORF4, MY039 90.3 0.096 3.3E-06 41.3 1.4 44 20-64 13-63 (93)
78 2ko5_A Ring finger protein Z; 86.4 0.29 9.8E-06 39.7 1.9 49 17-69 23-71 (99)
79 1weo_A Cellulose synthase, cat 77.2 2.3 7.9E-05 34.0 3.9 48 21-69 15-68 (93)
80 1z60_A TFIIH basal transcripti 63.4 4.8 0.00016 29.6 2.8 41 23-65 16-58 (59)
81 3mjh_B Early endosome antigen 53.2 2.5 8.5E-05 27.8 -0.3 18 21-38 4-21 (34)
82 2lbm_A Transcriptional regulat 52.2 14 0.00048 31.7 4.2 44 22-66 63-115 (142)
83 1m3v_A FLIN4, fusion of the LI 48.8 7.7 0.00026 31.5 2.0 47 20-69 30-79 (122)
84 2zet_C Melanophilin; complex, 48.4 4.5 0.00015 35.1 0.5 46 21-67 67-116 (153)
85 1x61_A Thyroid receptor intera 46.1 14 0.00046 26.7 2.8 37 20-56 31-67 (72)
86 2o35_A Hypothetical protein DU 45.2 7.3 0.00025 31.7 1.2 14 43-56 41-54 (105)
87 2xqn_T Testin, TESS; metal-bin 44.0 11 0.00037 30.4 2.2 45 20-69 28-73 (126)
88 3fyb_A Protein of unknown func 43.7 8.3 0.00029 31.3 1.4 14 43-56 40-53 (104)
89 2jne_A Hypothetical protein YF 43.5 2.4 8.2E-05 34.4 -1.8 39 23-69 33-71 (101)
90 2pv0_B DNA (cytosine-5)-methyl 42.4 9.8 0.00034 37.8 2.0 49 40-91 112-168 (386)
91 1rut_X Flinc4, fusion protein 40.2 9.5 0.00033 33.3 1.3 47 20-69 30-79 (188)
92 2cup_A Skeletal muscle LIM-pro 39.9 8.5 0.00029 29.7 0.9 46 20-69 31-76 (101)
93 2rgt_A Fusion of LIM/homeobox 39.1 21 0.00072 30.4 3.4 45 20-69 31-75 (169)
94 2d8x_A Protein pinch; LIM doma 37.1 14 0.00047 26.5 1.6 36 20-55 29-64 (70)
95 2dar_A PDZ and LIM domain prot 37.0 18 0.00061 27.5 2.3 34 21-54 50-83 (90)
96 3a1b_A DNA (cytosine-5)-methyl 36.3 16 0.00056 31.9 2.2 51 40-93 98-156 (159)
97 2l4z_A DNA endonuclease RBBP8, 35.5 23 0.00079 28.9 2.9 13 23-35 62-74 (123)
98 4g9i_A Hydrogenase maturation 35.1 18 0.00062 38.9 2.7 72 20-91 104-211 (772)
99 1wd2_A Ariadne-1 protein homol 34.1 7.2 0.00025 28.5 -0.4 34 23-56 7-47 (60)
100 1x62_A C-terminal LIM domain p 33.8 20 0.00067 26.5 2.0 33 21-54 40-73 (79)
101 3ttc_A HYPF, transcriptional r 33.0 20 0.00068 38.0 2.6 50 20-69 15-99 (657)
102 2jtn_A LIM domain-binding prot 32.0 21 0.00072 30.8 2.2 45 20-69 85-129 (182)
103 1x4l_A Skeletal muscle LIM-pro 31.5 18 0.00061 26.1 1.4 35 20-54 33-67 (72)
104 2d8z_A Four and A half LIM dom 30.8 27 0.00092 24.9 2.3 35 20-54 29-63 (70)
105 3vth_A Hydrogenase maturation 30.6 22 0.00076 38.2 2.5 50 20-69 109-193 (761)
106 6rxn_A Rubredoxin; electron tr 30.5 21 0.00071 24.8 1.5 13 22-34 4-16 (46)
107 2cur_A Skeletal muscle LIM-pro 30.3 27 0.00091 24.9 2.2 36 20-55 29-64 (69)
108 2xjy_A Rhombotin-2; oncoprotei 30.2 20 0.00068 28.9 1.6 47 20-69 27-76 (131)
109 1wil_A KIAA1045 protein; ring 30.0 42 0.0014 26.5 3.3 36 16-53 9-47 (89)
110 3ql9_A Transcriptional regulat 29.9 36 0.0012 28.6 3.2 44 22-66 57-109 (129)
111 1nyp_A Pinch protein; LIM doma 29.1 21 0.0007 25.3 1.4 35 20-54 29-63 (66)
112 2ct7_A Ring finger protein 31; 28.4 7.2 0.00025 30.1 -1.3 30 24-53 27-61 (86)
113 1zbd_B Rabphilin-3A; G protein 26.6 17 0.00057 30.7 0.6 48 20-67 53-106 (134)
114 1x64_A Alpha-actinin-2 associa 26.5 26 0.0009 26.4 1.6 10 24-33 27-36 (89)
115 2d8y_A Eplin protein; LIM doma 26.4 43 0.0015 25.3 2.9 36 20-55 40-75 (91)
116 2jmo_A Parkin; IBR, E3 ligase, 26.1 6.8 0.00023 30.0 -1.8 33 22-54 25-69 (80)
117 2gmg_A Hypothetical protein PF 23.6 36 0.0012 27.8 2.0 28 34-69 67-94 (105)
118 2lri_C Autoimmune regulator; Z 23.4 63 0.0022 23.7 3.2 48 20-68 10-59 (66)
119 1b8t_A Protein (CRP1); LIM dom 22.9 35 0.0012 29.6 1.9 37 20-56 32-68 (192)
120 3f6q_B LIM and senescent cell 22.8 34 0.0012 24.1 1.6 33 21-53 38-70 (72)
121 1x63_A Skeletal muscle LIM-pro 22.4 35 0.0012 25.0 1.6 36 20-55 41-76 (82)
122 3uk3_C Zinc finger protein 217 22.3 39 0.0013 22.1 1.7 39 22-69 4-42 (57)
123 1wig_A KIAA1808 protein; LIM d 22.2 27 0.00091 25.5 0.9 33 21-54 30-64 (73)
124 1wyh_A SLIM 2, skeletal muscle 22.1 34 0.0012 24.4 1.4 35 20-54 31-65 (72)
125 1bbo_A Human enhancer-binding 21.6 39 0.0013 22.1 1.6 38 23-69 2-39 (57)
126 1x4k_A Skeletal muscle LIM-pro 21.4 33 0.0011 24.4 1.3 35 20-54 31-65 (72)
127 1weu_A Inhibitor of growth fam 20.8 30 0.001 27.4 0.9 46 20-68 34-85 (91)
128 2jrp_A Putative cytoplasmic pr 20.5 10 0.00036 29.6 -1.8 39 23-69 3-41 (81)
129 1x6e_A Zinc finger protein 24; 20.4 43 0.0015 23.3 1.7 41 20-69 12-52 (72)
130 1b8t_A Protein (CRP1); LIM dom 20.2 66 0.0023 27.8 3.2 46 20-69 140-185 (192)
131 3lqh_A Histone-lysine N-methyl 20.2 19 0.00066 31.9 -0.4 46 23-68 3-63 (183)
132 1vfy_A Phosphatidylinositol-3- 20.0 43 0.0015 24.9 1.6 31 22-52 11-44 (73)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=118.95 Aligned_cols=75 Identities=19% Similarity=0.545 Sum_probs=65.1
Q ss_pred hhhcccccccccccccccccccccCC-CCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISL-CLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~-CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
..+.+.+.+.|+||+++|.+|+++ + |||+||..||..|+...+...||+||..+ .....+.+|..+.++++.|..
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~--~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND--VSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS--CCTTSCEECHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC--CCccccCcCHHHHHHHHHHHH
Confidence 345688999999999999999999 7 99999999999999765557899999876 345678999999999999854
No 2
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.54 E-value=4.8e-15 Score=124.82 Aligned_cols=76 Identities=25% Similarity=0.599 Sum_probs=66.3
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCch
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKR 95 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~~ 95 (367)
...+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||+||..+. ....+.+|..+.++++.|+|...
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRA-QVFSCPACRYDLG--RSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCCCHHHHHHHHHHSTTTT
T ss_pred HHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhH-CcCCCCCCCccCC--CCCCCCCCHHHHHHHHHHccccc
Confidence 46678899999999999999999 99999999999999974 4458999999882 33678999999999999999754
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.51 E-value=5.8e-15 Score=114.22 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=61.7
Q ss_pred hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
..+.+.+.|+||+++|.+|+++ +|||+||+.||.+|+.. +...||+|+..+ ....+.+|..|.++++.|.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~---~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA-GHKTCPKSQETL---LHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBC---SSCCCEECTTTHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHH-CcCCCCCCcCCC---ChhhCccCHHHHHHHHHHH
Confidence 3567899999999999999999 89999999999999964 356899999887 4567889999999999885
No 4
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=116.93 Aligned_cols=87 Identities=22% Similarity=0.454 Sum_probs=65.9
Q ss_pred CchHhhhhhhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCC
Q 017736 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPD 80 (367)
Q Consensus 1 m~~~~~ma~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n 80 (367)
|+.+............+.+.+.+.|+||++.|.+|+++.+|||+||..||..|+.. ...||+||..+ ....+.+|
T Consensus 1 Ma~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~---~~~~l~~n 75 (99)
T 2y43_A 1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTV---TEPDLKNN 75 (99)
T ss_dssp -------CCCGGGGGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBC---CGGGCEEC
T ss_pred CCccccccCCcchhHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcC---ChhhCCcC
Confidence 33444333333334556778899999999999999988689999999999999975 36799999887 44678899
Q ss_pred hHHHHHHHHHCC
Q 017736 81 HNLQDIRAKIFP 92 (367)
Q Consensus 81 ~~L~~li~klfp 92 (367)
..+.++++.+..
T Consensus 76 ~~l~~~i~~~~~ 87 (99)
T 2y43_A 76 RILDELVKSLNF 87 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998843
No 5
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.48 E-value=1.6e-14 Score=118.82 Aligned_cols=83 Identities=35% Similarity=0.729 Sum_probs=68.6
Q ss_pred hhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCC-CCCCCCCChHHHHHHHH
Q 017736 11 VVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCL-PVEKLRPDHNLQDIRAK 89 (367)
Q Consensus 11 ~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~-~~~~lr~n~~L~~li~k 89 (367)
..++..+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+.. ...||+|+..+... +...+.+|..+.++++.
T Consensus 4 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~ 81 (108)
T 2ckl_A 4 TTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYK 81 (108)
T ss_dssp --CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHH
T ss_pred ccccchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHH
Confidence 3456778899999999999999999997799999999999999965 36799999887321 12367899999999999
Q ss_pred HCCCch
Q 017736 90 IFPFKR 95 (367)
Q Consensus 90 lfp~~~ 95 (367)
+++...
T Consensus 82 ~~~~~~ 87 (108)
T 2ckl_A 82 LVPGLF 87 (108)
T ss_dssp HSTTHH
T ss_pred HhhhHH
Confidence 998654
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.47 E-value=4.3e-14 Score=123.81 Aligned_cols=76 Identities=28% Similarity=0.593 Sum_probs=65.5
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCc
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFK 94 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~ 94 (367)
..+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||+||..+. ....+.+|..++++++.|++..
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKA-QVFSCPACRHDLG--QNYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCBCHHHHHHHHHHSTTT
T ss_pred HHHhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHh-CCCcCCCCCccCC--CCCCCCCCHHHHHHHHHHhhHh
Confidence 445677889999999999999998 99999999999999975 4457999999883 2237899999999999999864
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.47 E-value=2.2e-14 Score=117.84 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=64.6
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCc
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFK 94 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~ 94 (367)
....+.++|.||||+++|.+||++ +|||+||+.||..|+.. ...||+|+..+ ....+.+|..|.+++..|...+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLN--SPTDPFNRQTL---TESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTS--CSBCSSSCCBC---CTTSSEECHHHHHHHHHHHHTT
T ss_pred hhccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHc--CCCCCCCCCCC---ChhhceECHHHHHHHHHHHHHh
Confidence 344577899999999999999999 89999999999999974 46799999888 5678999999999999996543
No 8
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.47 E-value=2.3e-14 Score=114.10 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=63.9
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF 93 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~ 93 (367)
....+.++|.||||+++|.+||++ +|||+||+.||..|+.. ...||+|+..+ ....+.+|..|.+++..|...
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLN--SPTDPFNRQML---TESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC---CGGGCEECHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhc--CCCCCCCcCCC---ChHhcchHHHHHHHHHHHHHH
Confidence 345578899999999999999999 89999999999999975 46799999887 556899999999999998543
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.46 E-value=4.1e-14 Score=115.83 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=63.4
Q ss_pred hhcccccccccccccccccccccCCCC-CcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCL-HTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF 93 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~Cg-HtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~ 93 (367)
...+.++|.||||+++|.+||++ +|| |+||+.||.+|+.. ...||+|+..+ ....+.+|..|.++|..|...
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLS--DQTDPFNRSPL---TMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTT--SCBCTTTCSBC---CTTTSEECHHHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHh--CCCCCCCCCCC---ChhhceEcHHHHHHHHHHHHH
Confidence 34577899999999999999999 899 99999999999975 45799999888 567899999999999998543
No 10
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=115.04 Aligned_cols=74 Identities=18% Similarity=0.368 Sum_probs=62.6
Q ss_pred ccccccccccccccccccccCCCCCcccHHHHHHHhhcC----CCCcccc--cccc-cCCCCCCCCCCChHHHHHHHHHC
Q 017736 19 LEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE----EADCCPV--CNID-LGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 19 Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~----~~~~CPv--CR~~-l~~~~~~~lr~n~~L~~li~klf 91 (367)
..+.|.||||+++|.+||++..|||+||+.||..||... +...||+ |+.. + ....+.+|..|..+|..|.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l---~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDI---RKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCB---CGGGEEECHHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccccc---CHhhCcCCHHHHHHHHHHH
Confidence 467899999999999999993499999999999999864 2468999 8865 5 5678999999999999996
Q ss_pred CCch
Q 017736 92 PFKR 95 (367)
Q Consensus 92 p~~~ 95 (367)
....
T Consensus 81 ~~~~ 84 (94)
T 2yu4_A 81 KKRH 84 (94)
T ss_dssp TTCC
T ss_pred HHhc
Confidence 5544
No 11
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.43 E-value=2.7e-14 Score=125.79 Aligned_cols=84 Identities=32% Similarity=0.700 Sum_probs=62.8
Q ss_pred hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736 14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF 93 (367)
Q Consensus 14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~ 93 (367)
+....+.+.+.|+||+++|.+|+++.+|||+||..||..|+.. +...||+||..+. ....+.+|..+.+++..+++.
T Consensus 46 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 46 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLV--SKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp ----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCC--SGGGEEECHHHHHHHHHHC--
T ss_pred cchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCC--CcccCCcCHHHHHHHHHHHcc
Confidence 4455677889999999999999988799999999999999975 3567999998872 445688999999999999987
Q ss_pred chhcccC
Q 017736 94 KRRKVQA 100 (367)
Q Consensus 94 ~~~k~~~ 100 (367)
....+..
T Consensus 123 ~~~~~~~ 129 (165)
T 2ckl_B 123 RDEYEAH 129 (165)
T ss_dssp -------
T ss_pred hhHHHHH
Confidence 6544333
No 12
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=9.1e-14 Score=116.11 Aligned_cols=73 Identities=25% Similarity=0.599 Sum_probs=63.4
Q ss_pred hhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCC
Q 017736 13 KVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFP 92 (367)
Q Consensus 13 ~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp 92 (367)
....+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+. ..||+|+..+ ....+.+|..+.+++..+..
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~---~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPA---WIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBC---SCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcC---ccccccccHHHHHHHHHHHH
Confidence 3455678899999999999999999878999999999999985 5799999887 56778999999999998743
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.40 E-value=9.6e-14 Score=113.17 Aligned_cols=75 Identities=21% Similarity=0.472 Sum_probs=61.6
Q ss_pred hhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736 12 VKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 12 v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
.......+.+.+.|+||+++|.+|+++..|||+||..||..|+.... ..||+||..+ ....+..+..+.++++.+
T Consensus 12 ~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~---~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 12 DEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPL---QLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBC---CGGGCEECTTHHHHHHHH
T ss_pred cccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcC---CHHHhHhhHHHHHHHHHH
Confidence 34566778999999999999999999339999999999999998743 5799999887 456677777777776665
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=2.2e-13 Score=111.78 Aligned_cols=86 Identities=22% Similarity=0.583 Sum_probs=64.3
Q ss_pred CchHhhhhhhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC-CCCcccccccccCCCCCCCCCC
Q 017736 1 MDTVRTTARHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE-EADCCPVCNIDLGCLPVEKLRP 79 (367)
Q Consensus 1 m~~~~~ma~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~-~~~~CPvCR~~l~~~~~~~lr~ 79 (367)
||+...- ...+....+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+... +...||+||..+ ....+..
T Consensus 1 Mdls~~~-~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~---~~~~~~~ 75 (112)
T 1jm7_A 1 MDLSALR-VEEVQNVINAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI---TKRSLQE 75 (112)
T ss_dssp CCGGGSS-HHHHHHHHHHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC---CTTTCBC
T ss_pred CCccHHH-HHHHHHHHHhccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC---CHhhcCc
Confidence 5544432 223344556788899999999999999998 999999999999999763 235799999887 4456666
Q ss_pred ChHHHHHHHHHC
Q 017736 80 DHNLQDIRAKIF 91 (367)
Q Consensus 80 n~~L~~li~klf 91 (367)
+..+.++++.+.
T Consensus 76 ~~~l~~~~~~~~ 87 (112)
T 1jm7_A 76 STRFSQLVEELL 87 (112)
T ss_dssp CCSSSHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 666666666654
No 15
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=1.9e-13 Score=127.72 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=62.3
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736 18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF 93 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~ 93 (367)
.+.+.|.||||+++|.+||++ +|||+||+.||.+|+...+ ..||+|+.++ ....+.+|..|.++|+.|...
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~---~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-HFNPVTRSPL---TQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTC-SSCTTTCCCC---CGGGCEECHHHHHHHHHHHTT
T ss_pred CCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCC-CCCcCCCCCC---chhcCcccHHHHHHHHHHHHH
Confidence 456799999999999999999 8999999999999997643 3499999887 556799999999999999654
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-14 Score=110.48 Aligned_cols=65 Identities=32% Similarity=0.752 Sum_probs=53.0
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC-----CCCcccccccccCCCCCCCCCCChHHH
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE-----EADCCPVCNIDLGCLPVEKLRPDHNLQ 84 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~-----~~~~CPvCR~~l~~~~~~~lr~n~~L~ 84 (367)
.+.+.+.+.|+||++.|.+|+++ +|||+||..||.+|+... ....||+||..+ ....+.+|..+.
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~---~~~~l~~n~~l~ 75 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY---SFEHLQANQHLA 75 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC---CSSGGGTCSSSC
T ss_pred HhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC---CHhhCCcCHHHH
Confidence 45678899999999999999998 999999999999998762 256899999887 345566665443
No 17
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=6.4e-14 Score=116.30 Aligned_cols=78 Identities=23% Similarity=0.484 Sum_probs=65.0
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCC----CCCCCCCCChHHHHHHHHHC
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGC----LPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~----~~~~~lr~n~~L~~li~klf 91 (367)
...+.+++.|+||+++|.+|+++ +|||+||..||..|+.. +...||+||..+.. .....+..|..+.+++.+++
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred ccCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34567889999999999999999 99999999999999865 34689999987731 12366778999999999999
Q ss_pred CCch
Q 017736 92 PFKR 95 (367)
Q Consensus 92 p~~~ 95 (367)
|...
T Consensus 87 p~~~ 90 (115)
T 3l11_A 87 PREC 90 (115)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 8654
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=5.2e-13 Score=102.84 Aligned_cols=54 Identities=22% Similarity=0.723 Sum_probs=47.7
Q ss_pred hhhcccccccccccccccccccccCC-CCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 15 KRETLEACMTCPLCNSLLREATTISL-CLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~-CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+.+.+.+.|+||+++|.+|+++ + |||+||..||.+|+...+...||+||..+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred ccccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 346678899999999999999998 7 99999999999999875556899999865
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.1e-13 Score=107.60 Aligned_cols=67 Identities=33% Similarity=0.792 Sum_probs=54.4
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC----CCCcccccccccCCCCCCCCCCChHHHH
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE----EADCCPVCNIDLGCLPVEKLRPDHNLQD 85 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~----~~~~CPvCR~~l~~~~~~~lr~n~~L~~ 85 (367)
..+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+... +...||+||..+ ....+.+|..+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY---PFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC---CTTCCEECSCCCS
T ss_pred HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC---CHHhCCcCHHHHH
Confidence 446678899999999999999988 899999999999999873 257899999887 4455666655443
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-13 Score=106.86 Aligned_cols=67 Identities=28% Similarity=0.741 Sum_probs=54.6
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc----CCCCcccccccccCCCCCCCCCCChHHHH
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD----EEADCCPVCNIDLGCLPVEKLRPDHNLQD 85 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~----~~~~~CPvCR~~l~~~~~~~lr~n~~L~~ 85 (367)
..+.+.+.+.|+||++.+.+|+.+ +|||+||..||..|+.. .+...||+||..+ ....+.+|..+.+
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY---QPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS---CSSSCCCSCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc---CHHhcCccHHHHH
Confidence 346678899999999999999998 99999999999999876 2357899999887 4456666655443
No 21
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.33 E-value=6.4e-13 Score=120.13 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=63.1
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
...+.+.|.||||+++|.+||++ +|||+||+.||..|+...+. .||+|+.++ ....+.+|..|.+++..|.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l---~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGH-FDPVTRSPL---TQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCS-BCTTTCCBC---CGGGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCC-CCCCCcCCC---ChhhCcchHHHHHHHHHHH
Confidence 45678899999999999999999 99999999999999986443 699999888 5568999999999999885
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=1.3e-12 Score=112.21 Aligned_cols=68 Identities=29% Similarity=0.610 Sum_probs=53.1
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
.+.++++++|+||+++|.+|+++ +|||+||..||..|+.. ...||+||..+. ....+..+..++..++
T Consensus 47 ~~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-----~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 47 NDVLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR--KIECPICRKDIK-----SKTYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT--CSBCTTTCCBCC-----CEEECHHHHHHHHHHH
T ss_pred HHhccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHc--CCcCCCCCCcCC-----CCCCccchhHHHHHHH
Confidence 34567789999999999999999 99999999999999965 457999998772 1223555556665554
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=98.67 Aligned_cols=54 Identities=39% Similarity=0.844 Sum_probs=47.8
Q ss_pred hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
...+.+++.+.|+||++.|.+|+++..|||+||..||.+|+.. ...||+||..+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 60 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVV 60 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCccc
Confidence 3456788999999999999999997799999999999999976 45799999887
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=101.28 Aligned_cols=61 Identities=25% Similarity=0.605 Sum_probs=50.5
Q ss_pred hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHH
Q 017736 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQ 84 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~ 84 (367)
+...+.+.|+||++.|.+|+++ +|||+||..||.+|+.. ...||+||..+. ..+.++..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~----~~~~~~~~l~ 70 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRA--TPRCYICDQPTG----GIFNPAKELM 70 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHH--CSBCSSSCCBCC----SCCEECHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHC--CCcCCCcCcccc----ccCCcHHHHH
Confidence 4567789999999999999988 99999999999999965 457999998872 4566664443
No 25
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.7e-12 Score=123.45 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=64.6
Q ss_pred hhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccc--cccccCCCCCCCCCCChHHHHHHHHH
Q 017736 14 VKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPV--CNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 14 v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPv--CR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
+........++||||+++|.+||++..|||+||+.||.+|+...+...||+ |+..+ ....+.+|..|.++++.+
T Consensus 173 I~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l---~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 173 LQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV---SMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE---CGGGEEECHHHHHHHHHH
T ss_pred ceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC---chhhCCcCHHHHHHHHHH
Confidence 344557889999999999999998658999999999999998755678999 99877 677899999999999886
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.9e-12 Score=96.74 Aligned_cols=54 Identities=31% Similarity=0.656 Sum_probs=47.0
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc-CCCCccccccccc
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD-EEADCCPVCNIDL 69 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~-~~~~~CPvCR~~l 69 (367)
..+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. .....||+||..+
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 346678899999999999999999 99999999999999963 2346899999877
No 27
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.24 E-value=1.5e-12 Score=113.00 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=60.2
Q ss_pred hhhhhhhhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCC------CCCCCCCChH
Q 017736 9 RHVVKVKRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCL------PVEKLRPDHN 82 (367)
Q Consensus 9 ~~~v~v~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~------~~~~lr~n~~ 82 (367)
+....+..+.+++.+.|+||+++|.+|+++ .|||+||..||.+|+.. +...||+||..+... ....+.++..
T Consensus 18 g~~~~~~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~ 95 (141)
T 3knv_A 18 GFSKTLLGTKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSS-GPQNCAACVHEGIYEEGISILESSSAFPDNA 95 (141)
T ss_dssp SBCGGGTGGGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGG-SCEECHHHHHTTCCCTTTTEECGGGCEECHH
T ss_pred CcchhhhhccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhc-CCCCCCCCCCcccccccccccchhhhcccHH
Confidence 334455668899999999999999999998 99999999999999975 445799999865211 1223446666
Q ss_pred HHHHHHHH
Q 017736 83 LQDIRAKI 90 (367)
Q Consensus 83 L~~li~kl 90 (367)
+..++..+
T Consensus 96 ~~~~i~~L 103 (141)
T 3knv_A 96 ARREVESL 103 (141)
T ss_dssp HHHHHHTS
T ss_pred HHHHHccc
Confidence 66666554
No 28
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.24 E-value=2.4e-12 Score=107.55 Aligned_cols=72 Identities=33% Similarity=0.571 Sum_probs=60.6
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
..+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.... ..||+||..+ ....+.++..+..++..+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~---~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG-HKCPVDNEIL---LENQLFPDNFAKREILSLM 82 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC-SBCTTTCCBC---CGGGCEECHHHHHHHHTSE
T ss_pred hccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC-CCCCCCCCCc---CHHhcccCHHHHHHHccce
Confidence 456788999999999999999998 8999999999999997643 3799999887 4456778888888777653
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.5e-12 Score=94.60 Aligned_cols=52 Identities=27% Similarity=0.608 Sum_probs=45.8
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.+.+.+.|+||++.+.+|+.+ .|||+||..||.+|+.. ....||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSS-SSPKCTACQESI 60 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTT-SSCCCTTTCCCC
T ss_pred hhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHh-CcCCCCCCCcCC
Confidence 45678899999999999999998 99999999999999963 346799999877
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.9e-12 Score=101.56 Aligned_cols=56 Identities=27% Similarity=0.660 Sum_probs=48.3
Q ss_pred hhhhccccccccccccccccc----ccccCCCCCcccHHHHHHHhhcC-CCCcccccccccC
Q 017736 14 VKRETLEACMTCPLCNSLLRE----ATTISLCLHTFCRKCIYEKLSDE-EADCCPVCNIDLG 70 (367)
Q Consensus 14 v~~e~Led~LtCpIC~~ll~d----Pvtl~~CgHtFC~~CI~~~l~~~-~~~~CPvCR~~l~ 70 (367)
...+.+.+.+.|+||++.|.+ |+.+ +|||+||..||.+|+... ....||+||..+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cChhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 445678889999999999999 9988 999999999999999764 2468999998773
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.2e-12 Score=92.70 Aligned_cols=50 Identities=34% Similarity=0.713 Sum_probs=43.8
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcC-CCCccccc
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDE-EADCCPVC 65 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~-~~~~CPvC 65 (367)
..+.+.+.+.|+||++.|.+|+++ +|||+||..||.+|+... ....||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 446688999999999999999999 999999999999999742 34679998
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=1.1e-11 Score=102.77 Aligned_cols=70 Identities=24% Similarity=0.575 Sum_probs=55.6
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCC-CCChHHHHHHHHH
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKL-RPDHNLQDIRAKI 90 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~l-r~n~~L~~li~kl 90 (367)
.+.+.+.+.|+||+++|.+|+++ +|||+||..||.+|+... ...||+||..+. ...+ ..+..+.+++..+
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~---~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKVM-GSYCPSCRYPCF---PTDLESPVKSFLNILNSL 87 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHT-CSBCTTTCCBCC---GGGCBCCCHHHHHHHHHC
T ss_pred HHhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHC-cCcCCCCCCCCC---HhhccccHHHHHHHHHHh
Confidence 35577889999999999999998 999999999999999763 457999998873 2333 3466666666655
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.3e-11 Score=88.30 Aligned_cols=50 Identities=38% Similarity=0.786 Sum_probs=43.0
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhc-CCCCccccc
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD-EEADCCPVC 65 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~-~~~~~CPvC 65 (367)
..+.+.+.+.|+||++.+.+|+.+ +|||+||..||.+|+.. .....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678899999999999999998 99999999999999764 345689998
No 34
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.10 E-value=2.5e-11 Score=107.18 Aligned_cols=72 Identities=33% Similarity=0.577 Sum_probs=60.0
Q ss_pred hhhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
..+.+.+.|.|+||+++|.+|+++ +|||+||..||.+|+... ...||+||..+ ....+.++..+..++..+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~---~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDA-GHKCPVDNEIL---LENQLFPDNFAKREILSLM 82 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH-CSBCTTTCCBC---CGGGCEECHHHHHHHHTSE
T ss_pred hccCCCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHhC-CCCCCCCccCc---chhhhhhhHHHHHHHhhcc
Confidence 456789999999999999999998 999999999999999763 34799999887 4455677888877777653
No 35
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=92.23 Aligned_cols=49 Identities=18% Similarity=0.497 Sum_probs=43.6
Q ss_pred cccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 18 TLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
...+.+.|+||++.+.+|+.+ +|||.||..||..|+... ..||+||..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLG--KRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCS--SBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCC--CcCcCcCchh
Confidence 456788999999999999999 899999999999999653 6799999876
No 36
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.07 E-value=5.4e-11 Score=89.70 Aligned_cols=48 Identities=27% Similarity=0.814 Sum_probs=42.2
Q ss_pred ccccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+.+.|+||++.|.+| +.+ +|||+||..||.+|+... ..||+||..+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC--CCCCCCCCcc
Confidence 46789999999999998 566 999999999999999764 5799999887
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=4.4e-11 Score=89.38 Aligned_cols=47 Identities=30% Similarity=0.697 Sum_probs=40.4
Q ss_pred cccccccccc-cccccc----ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNS-LLREAT----TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~-ll~dPv----tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+++.|+||++ +|.+|+ .+ .|||+||..||.+|+.. +...||+||..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHT-TSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHc-CCCcCCCCCCcc
Confidence 4688999999 999995 45 89999999999999765 346799999887
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=5.4e-11 Score=88.94 Aligned_cols=51 Identities=27% Similarity=0.756 Sum_probs=44.0
Q ss_pred hhcccccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.+.+.+.|+||++.|.+| +.+ .|||.||..||..|+.. ...||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 66 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 66 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH--CSSCTTTCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc--CCCCCCCCCcc
Confidence 34567889999999999998 666 99999999999999976 45799999876
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=3.5e-10 Score=88.79 Aligned_cols=51 Identities=29% Similarity=0.623 Sum_probs=41.7
Q ss_pred hcccccccccccccccc--cccccCC--CCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 17 ETLEACMTCPLCNSLLR--EATTISL--CLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~--dPvtl~~--CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..++++++||||++.+. +++.+ + |||+||+.|+.+++.. +...||.||..+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~ 60 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTD-ENGLCPACRKPY 60 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBC
T ss_pred cccccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 45788999999999874 34443 4 9999999999998865 457899999887
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=85.40 Aligned_cols=46 Identities=33% Similarity=0.893 Sum_probs=40.5
Q ss_pred ccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+.+.|+||++.+.+| +.+ .|||.||..||.+|+.. ...||+||..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc--CCCCCCCCccC
Confidence 468899999999988 566 99999999999999976 45799999877
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.1e-10 Score=85.34 Aligned_cols=44 Identities=25% Similarity=0.692 Sum_probs=38.8
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.++|+||++.|.+|+++ +|||+||..||.. ....||+||..+
T Consensus 4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~-----~~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEA-----SGMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSS-----SSSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCeEEc-CCCCcccHHHHcc-----CCCCCCcCCcEe
Confidence 5678999999999999998 8999999999876 235799999876
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.95 E-value=2.6e-10 Score=87.82 Aligned_cols=52 Identities=31% Similarity=0.657 Sum_probs=42.6
Q ss_pred hhccccccccccccccccccc--ccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREAT--TISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPv--tl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.+.+.+.|+||++.|.++. .+++|+|.||..||.+|+... ..||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~ 62 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--DSCPVCRKSL 62 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--CSCTTTCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--CcCcCcCCcc
Confidence 345677899999999998653 334899999999999999653 5799999887
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.9e-10 Score=86.84 Aligned_cols=51 Identities=25% Similarity=0.646 Sum_probs=44.0
Q ss_pred hhcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCcccccccccC
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
.+.+.+.+.|+||++.+.+ +.+ +|||.||..||.+|+.. ...||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDR--HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCC--CSSCHHHHHCTT
T ss_pred hhcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHC--cCcCCCcCCccc
Confidence 4567788999999999999 777 99999999999999863 567999998773
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.91 E-value=3.9e-10 Score=84.53 Aligned_cols=48 Identities=27% Similarity=0.729 Sum_probs=40.9
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.....|+||++.+.+|+.+.+|||.||..||.+|+... ..||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~ 50 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLCKVPV 50 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTTCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc--CcCcCCChhh
Confidence 45678999999999985545999999999999999753 5799999876
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.90 E-value=5.2e-10 Score=80.40 Aligned_cols=49 Identities=24% Similarity=0.675 Sum_probs=41.0
Q ss_pred cccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+++...|+||++.|.+ ++.+..|||.||..||.+|+.. ...||+||..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 4678899999999987 6666349999999999999965 45799999765
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.89 E-value=3.5e-10 Score=90.40 Aligned_cols=49 Identities=33% Similarity=0.703 Sum_probs=41.6
Q ss_pred ccccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 18 TLEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 18 ~Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
...+...|+||++.|.+ ++.+ +|||.||..||..|+.. ...||+||..+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~ 87 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK--SGTCPVCRCMF 87 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT--TCBCTTTCCBS
T ss_pred ccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc--CCcCcCcCccC
Confidence 35677899999998876 6677 89999999999999965 35799999876
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.88 E-value=6e-10 Score=79.95 Aligned_cols=46 Identities=28% Similarity=0.618 Sum_probs=39.1
Q ss_pred cccccccccccccc----ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLRE----ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~d----Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+...|+||++.|.+ ++.+ +|||.||..||.+|+... ..||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEG--YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcC--CcCCCCCCcC
Confidence 46789999999866 5555 999999999999999874 6799999765
No 48
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.85 E-value=1e-09 Score=82.53 Aligned_cols=50 Identities=26% Similarity=0.737 Sum_probs=40.7
Q ss_pred hcccccccccccccccc---cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 17 ETLEACMTCPLCNSLLR---EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~---dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+.......|+||++.|. .++.+ +|||.||..||..|+... ..||+||..+
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~ 61 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITN--KKCPICRVDI 61 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCSBS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcC--CCCcCcCccc
Confidence 34567789999999885 34555 899999999999999764 4699999877
No 49
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=5.2e-10 Score=86.27 Aligned_cols=48 Identities=23% Similarity=0.534 Sum_probs=42.4
Q ss_pred hhhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+..| ..||+||..+
T Consensus 17 ~~~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i 65 (74)
T 4ic3_A 17 QLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI 65 (74)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC------SBCTTTCCBC
T ss_pred HHhcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC------ccCCCcCcCc
Confidence 345677889999999999999999 99999 999999876 4699999876
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=9.1e-10 Score=83.94 Aligned_cols=52 Identities=27% Similarity=0.664 Sum_probs=42.7
Q ss_pred hhccccccccccccccccccccc--CCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTI--SLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl--~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
...+.+...|+||++.|.++..+ ++|+|.||..||.+|+... ..||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~ 62 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPV 62 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCccc
Confidence 34567789999999999866432 3799999999999999764 4799999877
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.85 E-value=1.1e-09 Score=90.17 Aligned_cols=50 Identities=24% Similarity=0.559 Sum_probs=40.1
Q ss_pred cccccccccccccccc--------------c---cCCCCCcccHHHHHHHhhc---CCCCcccccccccC
Q 017736 21 ACMTCPLCNSLLREAT--------------T---ISLCLHTFCRKCIYEKLSD---EEADCCPVCNIDLG 70 (367)
Q Consensus 21 d~LtCpIC~~ll~dPv--------------t---l~~CgHtFC~~CI~~~l~~---~~~~~CPvCR~~l~ 70 (367)
.+..|+||++.|.+|. . +.+|+|.||..||..|+.. .....||+||..++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3568999999997764 1 4489999999999999964 23468999998773
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=8.6e-10 Score=91.91 Aligned_cols=48 Identities=27% Similarity=0.800 Sum_probs=42.0
Q ss_pred ccccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+.+.|+||++.|.+| +.+ .|||+||..||.+|+... ..||+|+..+
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 58 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKI 58 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC--SBCTTTCCBC
T ss_pred CCCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC--CCCCCCCCcC
Confidence 35689999999999999 777 999999999999999653 5799999887
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=84.09 Aligned_cols=48 Identities=25% Similarity=0.594 Sum_probs=41.2
Q ss_pred ccccccccccccccccc---cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 19 LEACMTCPLCNSLLREA---TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 19 Led~LtCpIC~~ll~dP---vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+...|+||++.|.++ +.+ +|+|.||..||..|+... ..||+||..+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKAN--RTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHC--SSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcC--CcCcCcCCcC
Confidence 45678999999999877 556 899999999999999763 5799999876
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.1e-09 Score=82.87 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=40.6
Q ss_pred hhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+... ..||+||..+
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i 66 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI 66 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC------SBCTTTCCBC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC------CCCccCCcee
Confidence 34567788999999999999998 99999 999999642 5699999877
No 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=5.3e-09 Score=78.40 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=40.8
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.|.||||++++.+||.+..|||+||+.||.+|+...+ .||+++..+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L 48 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPL 48 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCC
Confidence 4889999999999999867999999999999998644 499999887
No 56
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=4.2e-09 Score=82.54 Aligned_cols=48 Identities=29% Similarity=0.610 Sum_probs=41.5
Q ss_pred hhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCcccccccccC
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDLG 70 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l~ 70 (367)
.+.+.+...|+||++.+.+++.+ +|||. ||..|+..+ ..||+||..+.
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 60 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL------QSCPVCRSRVE 60 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC------SBCTTTCCBCC
T ss_pred HHcCCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc------CcCCCCCchhh
Confidence 45567788999999999999999 99999 999999865 26999998774
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.62 E-value=1.4e-08 Score=101.60 Aligned_cols=51 Identities=22% Similarity=0.561 Sum_probs=43.6
Q ss_pred hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+.......|+||++.+.+|+.+ +|||.||..||..|+.. ....||+||..+
T Consensus 327 e~~~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i 377 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES-EGQGCPFCRCEI 377 (389)
T ss_dssp HTTTSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHH-TCSBCTTTCCBC
T ss_pred hhcCCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhc-CCCCCCCCCCcc
Confidence 3445558999999999999999 99999999999999873 346799999877
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.5e-08 Score=79.35 Aligned_cols=47 Identities=26% Similarity=0.691 Sum_probs=38.9
Q ss_pred cccccccccccccc--------------ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLRE--------------ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~d--------------Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
++..|+||++.|.+ ++.+..|+|.||..||.+|+... ..||+||..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCc
Confidence 46779999999976 44553699999999999999764 5799999876
No 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=6.6e-09 Score=83.24 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=39.4
Q ss_pred cccccccccccccccccc--CCCCCcccHHHHHHHhhcC---C---CCcccc--cccc
Q 017736 21 ACMTCPLCNSLLREATTI--SLCLHTFCRKCIYEKLSDE---E---ADCCPV--CNID 68 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl--~~CgHtFC~~CI~~~l~~~---~---~~~CPv--CR~~ 68 (367)
+.++|+||++.+..|.++ ..|||.||..||.+++... + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468899999999988764 3699999999999998742 2 358999 9876
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.53 E-value=2.6e-08 Score=82.83 Aligned_cols=47 Identities=30% Similarity=0.865 Sum_probs=41.4
Q ss_pred cccccccccccccccc-------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREA-------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dP-------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.+.|+||++.|.++ +.+ .|||.||..||.+|+.. ...||+||..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc--CCCCCCCCCcC
Confidence 5678899999999987 666 99999999999999976 35799999877
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.41 E-value=3.8e-08 Score=97.08 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=41.8
Q ss_pred hhcccccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
...+.+++.|+||++.+.+|+.+ +|||. ||..|+..+ ..||+||..+
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~------~~CP~CR~~i 336 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL------RKCPICRGII 336 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC------SBCTTTCCBC
T ss_pred HHhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC------CcCCCCCCCc
Confidence 45577889999999999999999 99999 999999876 4699999876
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.41 E-value=1.1e-07 Score=78.80 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=38.9
Q ss_pred ccccccccccccccc-----------------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLREA-----------------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~dP-----------------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+...|.||++.|.++ +.+..|+|.|+..||..|+.. ...||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence 456899999998866 344489999999999999965 46799999875
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.32 E-value=1.7e-07 Score=70.30 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=40.0
Q ss_pred ccccccccccccccccccc-CCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTI-SLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl-~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.++..|.||++.+.+++.+ .+|||. ||..|+..++.. ...||+||..+
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcch
Confidence 4567899999999999853 389999 899999998864 35699999876
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=2.6e-07 Score=70.29 Aligned_cols=43 Identities=26% Similarity=0.614 Sum_probs=37.7
Q ss_pred cccccccccccccccccccCCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+...|.||++.+.+++.+ +|||. ||..|+.. ...||+||..+
T Consensus 13 ~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~------~~~CP~CR~~i 56 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY------FQQCPMCRQFV 56 (68)
T ss_dssp CCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH------CSSCTTTCCCC
T ss_pred CCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc------CCCCCCCCcch
Confidence 4578899999999999998 99999 99999984 24699999877
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.26 E-value=3.2e-07 Score=68.57 Aligned_cols=48 Identities=23% Similarity=0.559 Sum_probs=39.4
Q ss_pred ccccccccccccccccccc-CCCCCc-ccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTI-SLCLHT-FCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl-~~CgHt-FC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.....|+||++.+.+++.+ .+|||. ||..|+..++.. ...||+||..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchh
Confidence 3456899999999988643 489998 999999998855 35799999876
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.17 E-value=2.5e-07 Score=78.08 Aligned_cols=46 Identities=24% Similarity=0.585 Sum_probs=0.4
Q ss_pred cccccccccccccc-----------------cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 22 CMTCPLCNSLLREA-----------------TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~dP-----------------vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.-.|.||++.|.++ +.+.+|+|.||..||.+|+.. ...||+||..+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 110 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence 35899999998763 333489999999999999976 45799999775
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.4e-06 Score=68.63 Aligned_cols=49 Identities=16% Similarity=0.556 Sum_probs=40.6
Q ss_pred ccccccccccccc--ccccccCCCC-----CcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLL--REATTISLCL-----HTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll--~dPvtl~~Cg-----HtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+...|.||++.+ .+++.+ +|. |.|...||.+|+...+...||+|+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 4567899999877 357765 896 999999999999876556899999887
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=2.8e-05 Score=60.49 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=39.9
Q ss_pred ccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
....|.||.++|..-..-..|+|.|-..||.+||+......||+|+..+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 4467999999987544444799999999999999875457899999876
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.48 E-value=5.3e-05 Score=62.15 Aligned_cols=45 Identities=22% Similarity=0.554 Sum_probs=37.0
Q ss_pred cccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 24 TCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 24 tCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.|++|.-.+..-..+.+|.|.||..|+..|... +...||.|+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCee
Confidence 689999888766665599999999999998755 446799999776
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.04 E-value=0.00037 Score=51.69 Aligned_cols=49 Identities=22% Similarity=0.466 Sum_probs=39.5
Q ss_pred cccccccccccccccccccCCCC--C---cccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCL--H---TFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~Cg--H---tFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
++.-.|.||+....++... +|. | .|-..||.+|+...+...||+|+..+
T Consensus 4 ~~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 3556899999887777755 865 3 79999999999876667899999776
No 71
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.67 E-value=0.00076 Score=74.02 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=64.3
Q ss_pred hhcccccccccccccccccccccCCCC-CcccHHHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCCc
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCL-HTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFK 94 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~Cg-HtFC~~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~~ 94 (367)
...+.++|.|||-++++.|||++ +.| +||-+.+|.+|+.. ...||.-|.++ ....+.||+.|+..|+.|....
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~--~~tdP~Tr~~L---~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLS--DSTDPFNRMPL---KLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTT--CCBCTTTCCBC---CGGGCEECHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhc--CCCCCCCCCCC---CcccccccHHHHHHHHHHHHHH
Confidence 45678899999999999999999 887 69999999999976 35799999888 5667899999999999997655
Q ss_pred h
Q 017736 95 R 95 (367)
Q Consensus 95 ~ 95 (367)
+
T Consensus 959 ~ 959 (968)
T 3m62_A 959 K 959 (968)
T ss_dssp H
T ss_pred H
Confidence 4
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.61 E-value=0.00045 Score=68.18 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=38.5
Q ss_pred ccccccccccccccc----ccc---cCCCCCcccHHHHHHHhhcCCC---------CcccccccccC
Q 017736 20 EACMTCPLCNSLLRE----ATT---ISLCLHTFCRKCIYEKLSDEEA---------DCCPVCNIDLG 70 (367)
Q Consensus 20 ed~LtCpIC~~ll~d----Pvt---l~~CgHtFC~~CI~~~l~~~~~---------~~CPvCR~~l~ 70 (367)
+....|+||+.++.+ |.. -..|+|.|...||.+|++.... ..||.|+.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 356689999998876 322 1269999999999999975321 46999998874
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.23 E-value=0.0016 Score=52.03 Aligned_cols=33 Identities=18% Similarity=0.665 Sum_probs=28.1
Q ss_pred cccccccccc-ccccccc--cCCCCCcccHHHHHHHh
Q 017736 21 ACMTCPLCNS-LLREATT--ISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 21 d~LtCpIC~~-ll~dPvt--l~~CgHtFC~~CI~~~l 54 (367)
+++.|+||.+ ++.+|+. + .|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHh
Confidence 4689999996 5788888 6 899999999999843
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.82 E-value=0.0085 Score=55.93 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=40.1
Q ss_pred ccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
....|.||.+++..-+.-..|+|.|-..|+..|++..+...||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3667999999887655543599999999999999876667899999765
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.019 Score=56.91 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=55.7
Q ss_pred hhcccccccccccccccccccccCCCCCcccHH--HHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736 16 RETLEACMTCPLCNSLLREATTISLCLHTFCRK--CIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~--CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
...+.-.|.|||-...+..|+.-..|.|.-|.. -+..+........||+|...+ ...+|..|..+.+++...
T Consensus 243 ~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~---~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 243 TTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI---ALENLAISEFVDDILQNC 316 (371)
T ss_dssp -CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC---CGGGEEEBHHHHHHHTTS
T ss_pred eeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc---CHHHeeEcHHHHHHHHhc
Confidence 344456699999999999999988999995554 355555555678999999876 778899999888887543
No 76
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.04 E-value=0.029 Score=55.42 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=56.3
Q ss_pred hhhcccccccccccccccccccccCCCCCcccH--HHHHHHhhcCCCCcccccccccCCCCCCCCCCChHHHHHHHHH
Q 017736 15 KRETLEACMTCPLCNSLLREATTISLCLHTFCR--KCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKI 90 (367)
Q Consensus 15 ~~e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~--~CI~~~l~~~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~kl 90 (367)
....+.-.|.|||-...+..|+....|.|.-|. .-+..+........||+|...+ ..++|..|..+.+++...
T Consensus 208 ~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~---~~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 208 ATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA---AYESLILDGLFMEILNDC 282 (360)
T ss_dssp --CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC---CGGGEEEBHHHHHHHTTC
T ss_pred eeeeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc---CHHHeEEcHHHHHHHHhC
Confidence 334455578999999999999998899999554 4445555455678999999876 678899999999988754
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.26 E-value=0.096 Score=41.35 Aligned_cols=44 Identities=25% Similarity=0.695 Sum_probs=34.7
Q ss_pred cccccccccccccccccccCCC----CCcccHHHHHHHhhcCC---CCcccc
Q 017736 20 EACMTCPLCNSLLREATTISLC----LHTFCRKCIYEKLSDEE---ADCCPV 64 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~C----gHtFC~~CI~~~l~~~~---~~~CPv 64 (367)
...|.|.+|.+-|.+...+ .| +|.||.-|-+.+++.++ ...||.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 4568999999999998777 66 69999999999887642 245665
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.39 E-value=0.29 Score=39.66 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=35.8
Q ss_pred hcccccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 17 ETLEACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 17 e~Led~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..+-.-+.|..|...... .+....|-+|..|+.-.+.. +..||+|..++
T Consensus 23 ~s~~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~--SdrCpIC~~pL 71 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSV--SNRCPICKMPL 71 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSS--SSEETTTTEEC
T ss_pred ccccCcccChhhccccCC--eeeecchhhHHHHHHHHHhh--ccCCcccCCcC
Confidence 345556789999876553 23134699999999998855 46799999877
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.18 E-value=2.3 Score=34.02 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=33.3
Q ss_pred ccccccccccccc-----cccc-cCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 21 ACMTCPLCNSLLR-----EATT-ISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 21 d~LtCpIC~~ll~-----dPvt-l~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..-.|.||.+-+- ++.. -..|+-..|+.|+.- -+.++...||.|...+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY-ErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY-ERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH-HHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH-HHhccCccccccCCcc
Confidence 3468999998632 1211 124777889999864 4455778999999876
No 80
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.43 E-value=4.8 Score=29.61 Aligned_cols=41 Identities=24% Similarity=0.701 Sum_probs=28.2
Q ss_pred cccccccccccccc--ccCCCCCcccHHHHHHHhhcCCCCccccc
Q 017736 23 MTCPLCNSLLREAT--TISLCLHTFCRKCIYEKLSDEEADCCPVC 65 (367)
Q Consensus 23 LtCpIC~~ll~dPv--tl~~CgHtFC~~CI~~~l~~~~~~~CPvC 65 (367)
..|--|+..|.+.. .-..|++.||..|=. +..+....||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~--fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV--FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH--TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH--HHHhhccCCcCC
Confidence 45888888885432 233699999999943 434445679988
No 81
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.25 E-value=2.5 Score=27.84 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=13.6
Q ss_pred cccccccccccccccccc
Q 017736 21 ACMTCPLCNSLLREATTI 38 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl 38 (367)
+-|+||+|+..|..+-.+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 458899998888777554
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=52.16 E-value=14 Score=31.68 Aligned_cols=44 Identities=25% Similarity=0.613 Sum_probs=28.1
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhh---------cCCCCcccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLS---------DEEADCCPVCN 66 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~---------~~~~~~CPvCR 66 (367)
+..|.+|.+--.--.-- .|-..||..||..-+. ..+...||.|.
T Consensus 63 ~d~C~vC~~GG~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp BCSCSSSCCCSSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCeecccCCCCcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 45566666522111111 5888999999986552 34668899997
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.79 E-value=7.7 Score=31.47 Aligned_cols=47 Identities=13% Similarity=0.252 Sum_probs=35.1
Q ss_pred ccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.++|.|..|...|.+ .... .=+..||..|..+.+... ..|-.|...+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~--~~C~~C~~~I 79 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNS--GAGGSGGHMG 79 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCC--CSSSCSSCCS
T ss_pred hhCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCC--CccccCCCCc
Confidence 367999999999863 3333 567889999998877432 2599998776
No 84
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=48.39 E-value=4.5 Score=35.12 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=33.1
Q ss_pred ccccccccccccc----cccccCCCCCcccHHHHHHHhhcCCCCccccccc
Q 017736 21 ACMTCPLCNSLLR----EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNI 67 (367)
Q Consensus 21 d~LtCpIC~~ll~----dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~ 67 (367)
.+-.|.+|+..|. ....-..|.|.+|..|-. +........|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 5788999999653 233444799999999973 444455688999974
No 85
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.07 E-value=14 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.608 Sum_probs=26.0
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD 56 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~ 56 (367)
.+.|.|..|...|..-.....=+..||..|..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 4578899999888543222255778999998887743
No 86
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.16 E-value=7.3 Score=31.71 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=12.2
Q ss_pred CcccHHHHHHHhhc
Q 017736 43 HTFCRKCIYEKLSD 56 (367)
Q Consensus 43 HtFC~~CI~~~l~~ 56 (367)
-.||+.|+..|+..
T Consensus 41 AGFCRNCLskWy~~ 54 (105)
T 2o35_A 41 AGFCRNCLSNWYRE 54 (105)
T ss_dssp HSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36999999999976
No 87
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=44.01 E-value=11 Score=30.38 Aligned_cols=45 Identities=18% Similarity=0.453 Sum_probs=34.3
Q ss_pred cccccccccccccccc-cccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREA-TTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dP-vtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.|.|..|...|..- ... .=|..||..|..+.+. ..|..|...+
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~----~~C~~C~~~I 73 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVM-VNDKPVCKPCYVKNHA----VVCQGCHNAI 73 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEE-ETTEEEEHHHHHHHSC----CBCTTTCSBC
T ss_pred CCCCCcCCCCCCCCcCEEEe-ECCEEechHHhCcCcC----ccCcccCCcC
Confidence 4679999999988753 333 5678899999887652 4699999877
No 88
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=43.67 E-value=8.3 Score=31.32 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=12.2
Q ss_pred CcccHHHHHHHhhc
Q 017736 43 HTFCRKCIYEKLSD 56 (367)
Q Consensus 43 HtFC~~CI~~~l~~ 56 (367)
-.||+.|+..|+..
T Consensus 40 AGFCRNCLskWy~~ 53 (104)
T 3fyb_A 40 ADFCRNCLAKWLME 53 (104)
T ss_dssp HSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36999999999975
No 89
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.53 E-value=2.4 Score=34.41 Aligned_cols=39 Identities=31% Similarity=0.606 Sum_probs=26.9
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..||+|...+.. .=++.+|..|-..+.. ...||.|..++
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~---~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEM---KALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEE---EEECTTTCSBC
T ss_pred ccCccCCCccee-----cCCEEECccccchhhc---cccCcchhhHH
Confidence 899999987653 1134458888665432 25699999876
No 90
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=42.43 E-value=9.8 Score=37.80 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=29.3
Q ss_pred CCCCcccHHHHHHHhhc--------CCCCcccccccccCCCCCCCCCCChHHHHHHHHHC
Q 017736 40 LCLHTFCRKCIYEKLSD--------EEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 40 ~CgHtFC~~CI~~~l~~--------~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klf 91 (367)
.|...||..||.+.+.. .....|=+|.-.- ...-++.-+.....+..||
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p---~~~ll~~r~~w~~~~~~f~ 168 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS---RSGLLQRRRKWRSQLKAFY 168 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC---EETTEEBCSSHHHHHHHHH
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc---hHhhhhhhhhHHHHHHHHH
Confidence 57788999999888733 2347799997321 1222333333444566665
No 91
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=40.22 E-value=9.5 Score=33.26 Aligned_cols=47 Identities=17% Similarity=0.542 Sum_probs=35.1
Q ss_pred ccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.++|.|..|...|.. .... .=+..||..|..+.+... ..|..|...+
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~--~~C~~C~~~I 79 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNS--GACSACGQSI 79 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCC--EECTTTCCEE
T ss_pred ccCcccCCCCcccccCCceEEE-eCCccccccccccccccC--CccccCCCcc
Confidence 468999999998875 4444 567889999998876321 1599998776
No 92
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.92 E-value=8.5 Score=29.70 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=33.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.|.|..|...|........=+..||..|..+.+ ...|..|...+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~----~~~C~~C~~~I 76 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED----SPKCKGCFKAI 76 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC----CCBCSSSCCBC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc----CCccccCCCcc
Confidence 46799999999886543222467889999986543 34699998776
No 93
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.05 E-value=21 Score=30.37 Aligned_cols=45 Identities=18% Similarity=0.609 Sum_probs=33.9
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.++|.|..|...|..-... .=|..||..|..+.+. ..|..|...+
T Consensus 31 ~~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~----~~C~~C~~~I 75 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG----TKCAACQLGI 75 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHHS----CBCTTTCCBC
T ss_pred cccCccCCCCCcCCCCCcc-cCCeeeeccccccccc----cccccccccc
Confidence 4689999999988765433 5678899999987663 3588887665
No 94
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.06 E-value=14 Score=26.54 Aligned_cols=36 Identities=22% Similarity=0.612 Sum_probs=24.4
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLS 55 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~ 55 (367)
.+.|.|..|...|..-.....=+..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 456888888887765433224567788888877654
No 95
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.01 E-value=18 Score=27.47 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=18.5
Q ss_pred ccccccccccccccccccCCCCCcccHHHHHHHh
Q 017736 21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l 54 (367)
++|.|..|...|..-.....=+..||..|..+.+
T Consensus 50 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred cCCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 4566666666655322221345566777766544
No 96
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=36.30 E-value=16 Score=31.93 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCCCcccHHHHHHHhhc--------CCCCcccccccccCCCCCCCCCCChHHHHHHHHHCCC
Q 017736 40 LCLHTFCRKCIYEKLSD--------EEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPF 93 (367)
Q Consensus 40 ~CgHtFC~~CI~~~l~~--------~~~~~CPvCR~~l~~~~~~~lr~n~~L~~li~klfp~ 93 (367)
.|...||..||...+.. .....|-+|.-.- ...-++.-.....-+..||..
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~---l~~ll~~R~dw~~~l~~~f~~ 156 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG---TYGLLRRREDWPSRLQMFFAN 156 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC---EETTEEBCTTHHHHHHHHHC-
T ss_pred CCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc---HHHHhhhhhhHHHHHHHHhhc
Confidence 47789999999887654 2346798986321 122333333444455566543
No 97
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.55 E-value=23 Score=28.90 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=7.1
Q ss_pred ccccccccccccc
Q 017736 23 MTCPLCNSLLREA 35 (367)
Q Consensus 23 LtCpIC~~ll~dP 35 (367)
-.|.-|...+.+.
T Consensus 62 ~~C~~C~~~I~~~ 74 (123)
T 2l4z_A 62 KRCAGCGGKIADR 74 (123)
T ss_dssp SBBSSSSSBCCSS
T ss_pred CcCcCCCCCcCCc
Confidence 3566666655443
No 98
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=35.07 E-value=18 Score=38.92 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=44.6
Q ss_pred ccccccccccccccccc---------ccCCCCCcc--------------------cHHHHHHHhhcC------CCCcccc
Q 017736 20 EACMTCPLCNSLLREAT---------TISLCLHTF--------------------CRKCIYEKLSDE------EADCCPV 64 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPv---------tl~~CgHtF--------------------C~~CI~~~l~~~------~~~~CPv 64 (367)
.+.-+|+-|+..+.||- .-+.||-.| |..|-.+|-... +...||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 55678999999888872 223688777 999999986432 2357999
Q ss_pred cccccCCC-CCCCCCCChHHHHHHHHHC
Q 017736 65 CNIDLGCL-PVEKLRPDHNLQDIRAKIF 91 (367)
Q Consensus 65 CR~~l~~~-~~~~lr~n~~L~~li~klf 91 (367)
|.-.+... ..........+......+.
T Consensus 184 CGP~l~l~~~~~~~~~~~~i~~a~~~l~ 211 (772)
T 4g9i_A 184 CGPSYRLYTSDGQEIYGDPLRKAAELID 211 (772)
T ss_dssp TSCCEEEESSSCBCCTTHHHHHHHHHHT
T ss_pred CCceEEEEcCCCCeechHHHHHHHHHHH
Confidence 98654211 1111222345555555553
No 99
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.12 E-value=7.2 Score=28.47 Aligned_cols=34 Identities=21% Similarity=0.517 Sum_probs=22.4
Q ss_pred cccccccccccc-----ccccCC--CCCcccHHHHHHHhhc
Q 017736 23 MTCPLCNSLLRE-----ATTISL--CLHTFCRKCIYEKLSD 56 (367)
Q Consensus 23 LtCpIC~~ll~d-----Pvtl~~--CgHtFC~~CI~~~l~~ 56 (367)
-.||-|..++.. -|+-.. |++.||..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 468888877653 233322 8888888887766543
No 100
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.78 E-value=20 Score=26.52 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=17.0
Q ss_pred ccccccccccccccc-cccCCCCCcccHHHHHHHh
Q 017736 21 ACMTCPLCNSLLREA-TTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 21 d~LtCpIC~~ll~dP-vtl~~CgHtFC~~CI~~~l 54 (367)
++|.|..|...|..- ... .=+..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 40 ECYVCTDCGTNLKQKGHFF-VEDQIYCEKHARERV 73 (79)
T ss_dssp TTTSCSSSCCCHHHHCCEE-SSSCEECHHHHHHHH
T ss_pred CcCeeCCCCCCCCCCCeEe-ECCEEECHHHHHHHh
Confidence 355666666655432 222 344556666665544
No 101
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=33.01 E-value=20 Score=37.98 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=35.9
Q ss_pred ccccccccccccccccc---------ccCCCCCcc--------------------cHHHHHHHhhcC------CCCcccc
Q 017736 20 EACMTCPLCNSLLREAT---------TISLCLHTF--------------------CRKCIYEKLSDE------EADCCPV 64 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPv---------tl~~CgHtF--------------------C~~CI~~~l~~~------~~~~CPv 64 (367)
.|.-+|+-|+..+.||- .-+.||-.| |..|..+|-... +...||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 45678999999888772 223677777 999999986432 2367999
Q ss_pred ccccc
Q 017736 65 CNIDL 69 (367)
Q Consensus 65 CR~~l 69 (367)
|.-.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 97443
No 102
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=32.02 E-value=21 Score=30.79 Aligned_cols=45 Identities=18% Similarity=0.609 Sum_probs=32.3
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.++|.|..|...|..-... .=|..||..|..+.+. ..|..|...+
T Consensus 85 ~~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~----~kC~~C~~~I 129 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG----TKCAACQLGI 129 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEE-ETTEEECHHHHHHTTS----CCCTTTCCCC
T ss_pred cccCccCCCCCccCCCcee-ECCEeeecCccccccc----cccccCCCcc
Confidence 3678899998877654333 4567899999877653 3588898766
No 103
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.47 E-value=18 Score=26.08 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=22.4
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l 54 (367)
.+.|.|..|...|..-.....=+..||..|..+.+
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCC
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcCccc
Confidence 35688888888776433322456678888876543
No 104
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.78 E-value=27 Score=24.86 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=23.8
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l 54 (367)
.+.|.|..|...|........=+..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 35788899988775432222456788999987665
No 105
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=30.60 E-value=22 Score=38.20 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=35.4
Q ss_pred ccccccccccccccccc---------ccCCCCCcc--------------------cHHHHHHHhhcC------CCCcccc
Q 017736 20 EACMTCPLCNSLLREAT---------TISLCLHTF--------------------CRKCIYEKLSDE------EADCCPV 64 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPv---------tl~~CgHtF--------------------C~~CI~~~l~~~------~~~~CPv 64 (367)
.|.-+|+-|+..+.||- .-+.||-.| |..|..+|-... +...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 45678999999888773 222677555 999999975432 2357999
Q ss_pred ccccc
Q 017736 65 CNIDL 69 (367)
Q Consensus 65 CR~~l 69 (367)
|.-.+
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 97544
No 106
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.45 E-value=21 Score=24.84 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=9.6
Q ss_pred ccccccccccccc
Q 017736 22 CMTCPLCNSLLRE 34 (367)
Q Consensus 22 ~LtCpIC~~ll~d 34 (367)
.+.|.+|.-++..
T Consensus 4 ~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 4 KYVCNVCGYEYDP 16 (46)
T ss_dssp CEEETTTCCEECG
T ss_pred EEECCCCCeEEeC
Confidence 4689999877653
No 107
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.28 E-value=27 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.479 Sum_probs=24.9
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLS 55 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~ 55 (367)
.+.|.|..|...|........=+..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 357889999888764332224577899999877663
No 108
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.15 E-value=20 Score=28.91 Aligned_cols=47 Identities=23% Similarity=0.570 Sum_probs=34.3
Q ss_pred ccccccccccccccc---ccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.|.|..|...|.+ +... .=|..||..|..+.+.. ...|..|...+
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~--~~~C~~C~~~I 76 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQ--DGLCASCDKRI 76 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCC--CEECTTTCCEE
T ss_pred HHHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCC--ccChhhcCCcc
Confidence 468999999998853 3333 55778999999887632 12699998776
No 109
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.03 E-value=42 Score=26.52 Aligned_cols=36 Identities=22% Similarity=0.524 Sum_probs=26.2
Q ss_pred hhccccccccccccccccc---ccccCCCCCcccHHHHHHH
Q 017736 16 RETLEACMTCPLCNSLLRE---ATTISLCLHTFCRKCIYEK 53 (367)
Q Consensus 16 ~e~Led~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~~ 53 (367)
.+.+..+-.|.||...-.+ |-.+ |+-.|-..|+.+.
T Consensus 9 ~e~~~~D~~C~VC~~~t~~~l~pCRv--C~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAESLFPCRV--CTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSSCCSSCSS--SSSCCCHHHHHHH
T ss_pred ccCCCCCcccCccccccccceecccc--ccccccHhhcccc
Confidence 4556678889999864432 3333 8899999999986
No 110
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.89 E-value=36 Score=28.61 Aligned_cols=44 Identities=25% Similarity=0.614 Sum_probs=27.2
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHh---------hcCCCCcccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKL---------SDEEADCCPVCN 66 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l---------~~~~~~~CPvCR 66 (367)
+..|.+|.+--.-..-- .|-..||..||..-+ ...+...|+.|.
T Consensus 57 ~~~C~vC~dGG~LlcCd-~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCD-FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp BSSCTTTCCCSEEEECS-SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCcCeecCCCCeeEecC-CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 34477776521111111 578899999998642 134568999996
No 111
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.09 E-value=21 Score=25.26 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=20.6
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l 54 (367)
.+.|.|..|...|........=+..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHC
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHHHh
Confidence 34677777777665422222455667777776544
No 112
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.41 E-value=7.2 Score=30.11 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=20.2
Q ss_pred cccccccccc-c----ccccCCCCCcccHHHHHHH
Q 017736 24 TCPLCNSLLR-E----ATTISLCLHTFCRKCIYEK 53 (367)
Q Consensus 24 tCpIC~~ll~-d----Pvtl~~CgHtFC~~CI~~~ 53 (367)
-||-|..++. + +++-..|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3998887553 1 2333249999999997765
No 113
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.57 E-value=17 Score=30.73 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=30.5
Q ss_pred cccccccccccccc----cccccCCCCCcccHHHHHHHh--hcCCCCccccccc
Q 017736 20 EACMTCPLCNSLLR----EATTISLCLHTFCRKCIYEKL--SDEEADCCPVCNI 67 (367)
Q Consensus 20 ed~LtCpIC~~ll~----dPvtl~~CgHtFC~~CI~~~l--~~~~~~~CPvCR~ 67 (367)
...-.|.+|...|. ....-..|.|.+|..|-.... .......|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 45678999999772 222333799999999954321 1123467888864
No 114
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.51 E-value=26 Score=26.43 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=4.6
Q ss_pred cccccccccc
Q 017736 24 TCPLCNSLLR 33 (367)
Q Consensus 24 tCpIC~~ll~ 33 (367)
.|..|.+.+.
T Consensus 27 ~C~~C~~~I~ 36 (89)
T 1x64_A 27 LCDKCGSGIV 36 (89)
T ss_dssp BCTTTCCBCC
T ss_pred CcccCCCEec
Confidence 3445544443
No 115
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.39 E-value=43 Score=25.30 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=24.0
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLS 55 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~ 55 (367)
.++|.|..|...|..-.....=+..||..|..+.+.
T Consensus 40 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 40 ISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 357888888887765322224567788888877653
No 116
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.07 E-value=6.8 Score=29.98 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=22.1
Q ss_pred cccccc--cccccc-----cccccC-----CCCCcccHHHHHHHh
Q 017736 22 CMTCPL--CNSLLR-----EATTIS-----LCLHTFCRKCIYEKL 54 (367)
Q Consensus 22 ~LtCpI--C~~ll~-----dPvtl~-----~CgHtFC~~CI~~~l 54 (367)
..-||- |...+. ..++=. .|++.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 556887 877553 123332 589999999987764
No 117
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.62 E-value=36 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=16.9
Q ss_pred cccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 34 EATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 34 dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.-. .||+.|+ ..+ .....||.|+..-
T Consensus 67 p~~C~-~CG~~F~-----~~~--~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCR-KCGFVFK-----AEI--NIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBT-TTCCBCC-----CCS--SCCSSCSSSCCCC
T ss_pred CcChh-hCcCeec-----ccC--CCCCCCcCCCCCc
Confidence 34444 8999992 111 2336799998643
No 118
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=23.35 E-value=63 Score=23.71 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=31.4
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhc--CCCCcccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD--EEADCCPVCNID 68 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~--~~~~~CPvCR~~ 68 (367)
...-.|.||.+-- +-+.--.|...|...|+...+.. .+...||.|...
T Consensus 10 ~~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456799998632 22222247889999999765544 245789999753
No 119
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.93 E-value=35 Score=29.62 Aligned_cols=37 Identities=22% Similarity=0.557 Sum_probs=27.1
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSD 56 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~ 56 (367)
.++|.|..|...|..-.....=+..||..|..+.+..
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 4689999999988764322244678999999887743
No 120
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.79 E-value=34 Score=24.13 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=17.2
Q ss_pred ccccccccccccccccccCCCCCcccHHHHHHH
Q 017736 21 ACMTCPLCNSLLREATTISLCLHTFCRKCIYEK 53 (367)
Q Consensus 21 d~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~ 53 (367)
++|.|..|...|..-.....=|..||..|..+.
T Consensus 38 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 38 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (72)
T ss_dssp TTSSCTTTCCCCGGGCCEEETTEEECHHHHHHH
T ss_pred CCCcccCCCCCCCCCCeEeECCeEeCHHHHHHh
Confidence 456666666665543111133556666665543
No 121
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.44 E-value=35 Score=25.03 Aligned_cols=36 Identities=19% Similarity=0.569 Sum_probs=20.8
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLS 55 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~ 55 (367)
.+.|.|..|...|..-.....=+..||..|..+.+.
T Consensus 41 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 76 (82)
T 1x63_A 41 KDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 76 (82)
T ss_dssp TTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS
T ss_pred cccCchhhCCCccCCCccEeeCCEEECHHHHHHHhC
Confidence 346777777776654322213456677777766553
No 122
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=22.27 E-value=39 Score=22.06 Aligned_cols=39 Identities=18% Similarity=0.498 Sum_probs=22.8
Q ss_pred cccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 22 CMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 22 ~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.|++|...|.....+ -.| +.. -.....+.|+.|...+
T Consensus 4 ~~~C~~C~~~f~~~~~l--~~H------~~~-h~~~~~~~C~~C~~~f 42 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL--NIH------LRT-HTGEKPYKCEFCEYAA 42 (57)
T ss_dssp -CBCTTTCCBCSCHHHH--HHH------HHH-HHCCCCEECSSSSCEE
T ss_pred CccCCCCcchhCChHHH--HHH------HHH-cCCCCCcCCCCCcchh
Confidence 46789888887766544 111 111 1123447899998765
No 123
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.18 E-value=27 Score=25.51 Aligned_cols=33 Identities=12% Similarity=0.337 Sum_probs=19.8
Q ss_pred ccccccccccccc-c-ccccCCCCCcccHHHHHHHh
Q 017736 21 ACMTCPLCNSLLR-E-ATTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 21 d~LtCpIC~~ll~-d-Pvtl~~CgHtFC~~CI~~~l 54 (367)
+.|.|..|...|. . .... .=+..||..|.....
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQAAR 64 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHHTS
T ss_pred CcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChHhh
Confidence 5677888877765 2 2222 345567777765544
No 124
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.14 E-value=34 Score=24.39 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=22.8
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l 54 (367)
.+.|.|..|...|..-.....=+..||..|..+.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 31 EHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp TTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred cccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 35688888888776532221456678888887655
No 125
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.58 E-value=39 Score=22.09 Aligned_cols=38 Identities=21% Similarity=0.524 Sum_probs=21.4
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+.|++|...|.....+. .| + ..-.....+.|+.|...+
T Consensus 2 ~~C~~C~~~f~~~~~l~--~H------~-~~h~~~~~~~C~~C~~~f 39 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK--KH------I-RTHTDVRPYHCTYCNFSF 39 (57)
T ss_dssp CBCTTTCCBCSSHHHHH--HH------H-HHTSSCCCEECSSSSCEE
T ss_pred CcCCCCcCcCCCHHHHH--HH------H-HhcCCCCCccCCCCCchh
Confidence 56888888776654440 11 0 111112347899998766
No 126
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.43 E-value=33 Score=24.45 Aligned_cols=35 Identities=23% Similarity=0.555 Sum_probs=23.4
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHh
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKL 54 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l 54 (367)
.+.|.|..|...|..-.....=+..||..|..+.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 31 ETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp TTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred ccCCcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 45788888888776542221346678888887655
No 127
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.80 E-value=30 Score=27.36 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=27.8
Q ss_pred cccccccccccccccccccCC-----CC-CcccHHHHHHHhhcCCCCcccccccc
Q 017736 20 EACMTCPLCNSLLREATTISL-----CL-HTFCRKCIYEKLSDEEADCCPVCNID 68 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~-----Cg-HtFC~~CI~~~l~~~~~~~CPvCR~~ 68 (367)
.+...| ||....... ++ . |. .-|-..|+.-.....+.+.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~g~-MI-~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MI-GCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CC-CCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCC-Ee-EecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 456778 999965543 33 3 43 35777787521112355889999753
No 128
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.54 E-value=10 Score=29.60 Aligned_cols=39 Identities=28% Similarity=0.686 Sum_probs=24.1
Q ss_pred ccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 23 MTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 23 LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
..||.|...+..- =++.+|..|-..+... ..||.|..++
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~---afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQ---ALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEE---EECSSSCSCC
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCc---ccCcchhhHH
Confidence 6799999866531 1234577775543322 3688888766
No 129
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.39 E-value=43 Score=23.32 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=24.6
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
+..+.|++|...|.....+ -.| +. .-.....+.|+.|...+
T Consensus 12 ~k~~~C~~C~k~f~~~~~L--~~H------~~-~h~~~~~~~C~~C~~~f 52 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSIL--VQH------QR-VHTGEKPYKCLECGKAF 52 (72)
T ss_dssp CCCEECSSSCCEESSHHHH--HHH------HH-GGGCSCCEECSSSCCEE
T ss_pred CCCccCCCCCCccCCHHHH--HHH------HH-hcCCCCCeECCCCCccc
Confidence 3458899998888765544 112 11 11122457899998766
No 130
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.22 E-value=66 Score=27.79 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=32.2
Q ss_pred cccccccccccccccccccCCCCCcccHHHHHHHhhcCCCCccccccccc
Q 017736 20 EACMTCPLCNSLLREATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDL 69 (367)
Q Consensus 20 ed~LtCpIC~~ll~dPvtl~~CgHtFC~~CI~~~l~~~~~~~CPvCR~~l 69 (367)
.+.|.|..|...|..-.....=+..||..|..+.+.. .|..|....
T Consensus 140 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~----kc~~C~~~~ 185 (192)
T 1b8t_A 140 KSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGP----KGFGFGQGA 185 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCC----CCCCCCCCC
T ss_pred hhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCC----cCCCCCCcc
Confidence 4578899998887542222256788999999887633 488887654
No 131
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.17 E-value=19 Score=31.94 Aligned_cols=46 Identities=26% Similarity=0.472 Sum_probs=27.5
Q ss_pred cccccccccccccc----cc--CCCCCcccHHHHHH------Hhh---cCCCCcccccccc
Q 017736 23 MTCPLCNSLLREAT----TI--SLCLHTFCRKCIYE------KLS---DEEADCCPVCNID 68 (367)
Q Consensus 23 LtCpIC~~ll~dPv----tl--~~CgHtFC~~CI~~------~l~---~~~~~~CPvCR~~ 68 (367)
..||||...+.+.- .+ -.|..-|-..|+.- .+. ....+.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 46999999876542 23 13666666677521 111 1125789999854
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.04 E-value=43 Score=24.86 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=21.4
Q ss_pred ccccccccccccc---ccccCCCCCcccHHHHHH
Q 017736 22 CMTCPLCNSLLRE---ATTISLCLHTFCRKCIYE 52 (367)
Q Consensus 22 ~LtCpIC~~ll~d---Pvtl~~CgHtFC~~CI~~ 52 (367)
.-.|.+|...|.- -.---.||+.||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4589999986642 111125999999999754
Done!