Query 017738
Match_columns 366
No_of_seqs 319 out of 812
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.3 4.6E-07 1.6E-11 72.9 4.8 83 18-107 3-99 (101)
2 3ogl_Q JAZ1 incomplete degron 95.4 0.0078 2.7E-07 36.6 2.0 19 297-315 3-21 (21)
3 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.02 6.9E-07 45.5 2.1 43 62-105 4-49 (101)
4 3ogk_Q JAZ1 incomplete degron 93.1 0.031 1.1E-06 34.3 1.2 19 300-318 1-19 (22)
5 2d8u_A Ubiquitin ligase TRIM63 90.3 0.15 5E-06 37.3 2.4 47 56-109 3-50 (64)
6 2yvr_A Transcription intermedi 90.2 0.13 4.5E-06 35.9 2.0 44 58-108 3-46 (50)
7 2ffw_A Midline-1; B-BOX, ring 88.4 0.18 6.3E-06 39.0 1.8 44 61-105 30-76 (78)
8 2did_A Tripartite motif protei 85.7 0.5 1.7E-05 33.4 2.7 41 61-109 8-49 (53)
9 2dja_A Midline-2; tripartite m 85.3 0.63 2.1E-05 35.7 3.3 45 58-109 15-60 (84)
10 3ddt_A E3 ubiquitin-protein li 84.9 0.44 1.5E-05 33.1 2.0 41 61-108 6-47 (48)
11 2ffw_A Midline-1; B-BOX, ring 84.6 0.54 1.9E-05 36.4 2.7 45 16-60 28-75 (78)
12 1fre_A Nuclear factor XNF7; zi 82.9 0.93 3.2E-05 30.3 3.0 29 63-92 5-34 (42)
13 2yrg_A Tripartite motif-contai 76.6 1.3 4.4E-05 32.3 2.2 41 60-108 13-54 (59)
14 4hc9_A Trans-acting T-cell-spe 76.4 0.93 3.2E-05 37.9 1.5 75 16-90 3-89 (115)
15 2yrg_A Tripartite motif-contai 70.7 4.6 0.00016 29.2 4.0 42 18-66 14-56 (59)
16 2did_A Tripartite motif protei 70.1 4.4 0.00015 28.3 3.7 43 17-66 7-50 (53)
17 2csv_A Tripartite motif protei 67.7 1.9 6.7E-05 32.2 1.4 30 62-92 19-48 (72)
18 2fc7_A ZZZ3 protein; structure 63.0 11 0.00038 29.5 5.0 37 56-93 17-60 (82)
19 1fre_A Nuclear factor XNF7; zi 59.9 4.2 0.00014 27.0 1.8 32 19-51 4-36 (42)
20 2d8v_A Zinc finger FYVE domain 59.8 4.1 0.00014 31.3 1.9 49 59-110 6-55 (67)
21 2egm_A Tripartite motif-contai 59.2 2 6.8E-05 31.1 0.0 28 62-90 19-46 (57)
22 2d8u_A Ubiquitin ligase TRIM63 57.7 9.1 0.00031 27.5 3.5 47 17-69 7-54 (64)
23 2egm_A Tripartite motif-contai 57.6 6.9 0.00024 28.1 2.7 34 16-50 16-50 (57)
24 2yvr_A Transcription intermedi 55.4 7.5 0.00026 26.7 2.5 43 17-65 5-47 (50)
25 2dja_A Midline-2; tripartite m 52.6 10 0.00036 28.7 3.2 47 17-69 17-64 (84)
26 3ddt_A E3 ubiquitin-protein li 51.1 7.5 0.00026 26.6 1.9 34 18-51 6-40 (48)
27 2yqq_A Zinc finger HIT domain- 50.6 11 0.00038 27.8 2.9 25 60-85 11-35 (56)
28 4g92_A HAPB protein; transcrip 50.5 16 0.00054 27.8 3.7 27 317-343 36-63 (64)
29 2lri_C Autoimmune regulator; Z 47.3 13 0.00045 27.8 2.9 44 18-69 12-58 (66)
30 1mm2_A MI2-beta; PHD, zinc fin 46.9 37 0.0013 24.7 5.3 46 17-70 8-56 (61)
31 2csz_A Synaptotagmin-like prot 42.2 11 0.00036 29.6 1.7 47 14-69 21-72 (76)
32 2l5u_A Chromodomain-helicase-D 40.8 29 0.00098 25.2 3.8 31 12-50 5-35 (61)
33 1weo_A Cellulose synthase, cat 39.8 10 0.00035 30.8 1.3 34 56-89 11-51 (93)
34 2k0a_A PRE-mRNA-splicing facto 38.2 7.2 0.00024 32.4 0.2 31 58-88 42-79 (109)
35 1z60_A TFIIH basal transcripti 37.6 6.8 0.00023 29.2 -0.1 21 73-93 30-50 (59)
36 1f62_A Transcription factor WS 36.7 32 0.0011 23.7 3.4 45 20-69 2-49 (51)
37 2yql_A PHD finger protein 21A; 36.4 27 0.00092 24.8 3.0 27 17-51 8-34 (56)
38 1v6g_A Actin binding LIM prote 34.0 13 0.00045 27.6 1.1 61 30-91 3-73 (81)
39 2ysm_A Myeloid/lymphoid or mix 32.5 44 0.0015 26.6 4.1 66 16-92 5-80 (111)
40 2jne_A Hypothetical protein YF 32.4 25 0.00085 28.9 2.5 60 16-91 30-91 (101)
41 2csv_A Tripartite motif protei 31.3 21 0.00073 26.3 1.8 42 17-65 17-58 (72)
42 2ehe_A Four and A half LIM dom 30.9 32 0.0011 25.4 2.8 61 31-91 4-74 (82)
43 2e5r_A Dystrobrevin alpha; ZZ 30.6 42 0.0015 24.8 3.4 36 56-93 8-47 (63)
44 2lv9_A Histone-lysine N-methyl 30.5 74 0.0025 25.2 5.0 31 14-50 24-54 (98)
45 1x63_A Skeletal muscle LIM-pro 29.5 14 0.00049 27.3 0.6 60 31-90 4-73 (82)
46 1z60_A TFIIH basal transcripti 28.5 15 0.00051 27.3 0.5 33 19-51 16-51 (59)
47 2co8_A NEDD9 interacting prote 27.9 58 0.002 24.3 3.8 55 37-91 14-75 (82)
48 1x6a_A LIMK-2, LIM domain kina 25.5 47 0.0016 24.4 2.9 59 31-90 4-73 (81)
49 1zbd_B Rabphilin-3A; G protein 25.0 31 0.001 29.3 1.9 49 17-70 54-107 (134)
50 2dj7_A Actin-binding LIM prote 24.8 31 0.0011 25.8 1.8 35 56-90 37-71 (80)
51 2zet_C Melanophilin; complex, 23.6 28 0.00097 30.2 1.5 46 17-70 67-117 (153)
52 1x4s_A Protein FON, zinc finge 23.1 27 0.00093 26.1 1.0 28 62-89 12-43 (59)
53 2e6s_A E3 ubiquitin-protein li 23.0 77 0.0026 24.2 3.7 18 17-35 9-26 (77)
54 2ro1_A Transcription intermedi 21.5 74 0.0025 28.0 3.8 44 19-70 3-49 (189)
55 1wig_A KIAA1808 protein; LIM d 21.0 54 0.0019 23.9 2.4 37 56-92 26-64 (73)
56 2fiy_A Protein FDHE homolog; F 20.7 90 0.0031 29.9 4.5 62 18-88 182-260 (309)
57 2jrp_A Putative cytoplasmic pr 20.7 48 0.0016 26.1 2.1 59 17-91 1-61 (81)
58 2l3k_A Rhombotin-2, linker, LI 20.6 82 0.0028 25.3 3.6 51 40-90 10-67 (123)
59 3f6q_B LIM and senescent cell 20.5 35 0.0012 24.1 1.2 52 37-88 10-67 (72)
60 3pfq_A PKC-B, PKC-beta, protei 20.2 39 0.0013 35.0 1.9 29 62-90 114-147 (674)
61 2pv0_B DNA (cytosine-5)-methyl 20.0 45 0.0015 33.3 2.2 73 17-90 49-124 (386)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.32 E-value=4.6e-07 Score=72.92 Aligned_cols=83 Identities=19% Similarity=0.341 Sum_probs=66.1
Q ss_pred cccCcccCC---CCeeEEeeCCCccccccccccccccccCcCCcccc-c---------ccccCCCCcceeEecccccccc
Q 017738 18 MRTCNTCKA---AVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERM-W---------VSAACENGQATFSCNTDAASLR 84 (366)
Q Consensus 18 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv-~---------LCe~C~~~PA~v~C~aD~a~LC 84 (366)
...|+.|.. .+|+.+|..+.+.||..|...+|..++...+|..+ + +|+.++..+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 357999984 68999999999999999999999988877888865 2 3555444457899999999999
Q ss_pred ccccc-CCCCCCcccCCCCCcccc
Q 017738 85 LSCDA-DKHLANFLAHHHHARVPA 107 (366)
Q Consensus 85 ~sCD~-~iHsaN~la~rH~~RvPv 107 (366)
..|.. ..|. .| .-+||
T Consensus 83 ~~C~~~~~H~------~H-~~~~l 99 (101)
T 2jun_A 83 ALCKLVGRHR------DH-QVAAL 99 (101)
T ss_dssp HHHHHHTTTS------SS-CBCCC
T ss_pred hhcCCCCCcC------CC-CeecC
Confidence 99987 5563 36 55554
No 2
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=95.37 E-value=0.0078 Score=36.55 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhhc.....
Q 017738 297 PMNRVAKVLRYREKRKARR..... 315 (366)
Q Consensus 297 ~~~R~~~~~ryreKrk~R~..... 315 (366)
|..|.+.|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 5689999999999999873
No 3
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.11 E-value=0.02 Score=45.46 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=36.7
Q ss_pred cccccCCC---CcceeEecccccccccccccCCCCCCcccCCCCCcc
Q 017738 62 WVSAACEN---GQATFSCNTDAASLRLSCDADKHLANFLAHHHHARV 105 (366)
Q Consensus 62 ~LCe~C~~---~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~Rv 105 (366)
..|++|.. .+|+.+|..|...||..|....|..+....+| .++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h-~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGH-RLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTC-CBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCC-eee
Confidence 46999974 57999999999999999999888877777788 665
No 4
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=93.09 E-value=0.031 Score=34.34 Aligned_cols=19 Identities=47% Similarity=0.545 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 017738 300 RVAKVLRYREKRKARRFEK 318 (366)
Q Consensus 300 R~~~~~ryreKrk~R~f~k 318 (366)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5788999999999987654
No 5
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=90.30 E-value=0.15 Score=37.34 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=34.9
Q ss_pred CCcccccccccCCCCcceeEecccccccccccccC-CCCCCcccCCCCCccccCC
Q 017738 56 LPHERMWVSAACENGQATFSCNTDAASLRLSCDAD-KHLANFLAHHHHARVPAPP 109 (366)
Q Consensus 56 ~rH~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iHsaN~la~rH~~RvPv~~ 109 (366)
.+..+..+|+..+..+-.+||..|..++|..|... .|. .| ..+||.-
T Consensus 3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H-~~~~l~~ 50 (64)
T 2d8u_A 3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------AC-EVAPLQS 50 (64)
T ss_dssp CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SS-CEECTTT
T ss_pred CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CC-CeeCHHH
Confidence 34556678888866778999999999999999864 453 47 5555543
No 6
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=90.19 E-value=0.13 Score=35.95 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=33.5
Q ss_pred cccccccccCCCCcceeEecccccccccccccCCCCCCcccCCCCCccccC
Q 017738 58 HERMWVSAACENGQATFSCNTDAASLRLSCDADKHLANFLAHHHHARVPAP 108 (366)
Q Consensus 58 H~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~RvPv~ 108 (366)
..|..+|+..+..+-.+||..|...+|..|....|. .| ..+||.
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H-~~~~l~ 46 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DH-QYQFLE 46 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TC-CEEETT
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CC-ceecHH
Confidence 345667888766778899999999999999886553 46 666654
No 7
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=88.38 E-value=0.18 Score=39.05 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=35.6
Q ss_pred ccccccCCC---CcceeEecccccccccccccCCCCCCcccCCCCCcc
Q 017738 61 MWVSAACEN---GQATFSCNTDAASLRLSCDADKHLANFLAHHHHARV 105 (366)
Q Consensus 61 v~LCe~C~~---~PA~v~C~aD~a~LC~sCD~~iHsaN~la~rH~~Rv 105 (366)
..+|+.|.. .+|.-.|..|.+.+|..|-...|...+...+| ..+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H-~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGH-RLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSC-CCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCC-ccc
Confidence 357999975 56899999999999999988768776667788 554
No 8
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=85.65 E-value=0.5 Score=33.36 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=30.5
Q ss_pred ccccccCCCCcceeEeccccccccccccc-CCCCCCcccCCCCCccccCC
Q 017738 61 MWVSAACENGQATFSCNTDAASLRLSCDA-DKHLANFLAHHHHARVPAPP 109 (366)
Q Consensus 61 v~LCe~C~~~PA~v~C~aD~a~LC~sCD~-~iHsaN~la~rH~~RvPv~~ 109 (366)
..+|+... .+-.+||..|...+|..|.. .-| +.| ..+||.-
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H-~~~~l~e 49 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAH-TVVPLSG 49 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTS-CEEECCC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCC-cEeeHHH
Confidence 34677776 56789999999999999987 345 356 6666553
No 9
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=85.25 E-value=0.63 Score=35.69 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=31.6
Q ss_pred cccccccccCCCCcceeEeccccccccccccc-CCCCCCcccCCCCCccccCC
Q 017738 58 HERMWVSAACENGQATFSCNTDAASLRLSCDA-DKHLANFLAHHHHARVPAPP 109 (366)
Q Consensus 58 H~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~-~iHsaN~la~rH~~RvPv~~ 109 (366)
..+..+|+..+..+-.+||..|...+|..|.. .-| ..| .-+||.-
T Consensus 15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H-~~~~l~e 60 (84)
T 2dja_A 15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDH-QVASLND 60 (84)
T ss_dssp CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTC-CBCCCCS
T ss_pred CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCC-CccCHHH
Confidence 34445677765556789999999999999987 344 346 5555443
No 10
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=84.86 E-value=0.44 Score=33.06 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=29.4
Q ss_pred ccccccCCCCcceeEeccccccccccccc-CCCCCCcccCCCCCccccC
Q 017738 61 MWVSAACENGQATFSCNTDAASLRLSCDA-DKHLANFLAHHHHARVPAP 108 (366)
Q Consensus 61 v~LCe~C~~~PA~v~C~aD~a~LC~sCD~-~iHsaN~la~rH~~RvPv~ 108 (366)
..+|+..+..+..+||..|..++|..|.. ..|. .| .-+||.
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H-~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------AC-EVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TS-CEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CC-cEEeCC
Confidence 34677666556789999999999999974 3453 46 555553
No 11
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=84.56 E-value=0.54 Score=36.36 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=37.1
Q ss_pred CCcccCcccCC---CCeeEEeeCCCccccccccccccccccCcCCccc
Q 017738 16 DWMRTCNTCKA---AVSTLYCHTHLAYFCDSCDERVHAYNSMALPHER 60 (366)
Q Consensus 16 ~~~~~Cd~C~~---~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~R 60 (366)
.....||+|.. .+|+-.|....+.||..|=...|...+...+|.=
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 34689999975 6899999999999999998767887666777763
No 12
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=82.92 E-value=0.93 Score=30.32 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=22.8
Q ss_pred ccccCCCCcceeEecccccccccccccC-CC
Q 017738 63 VSAACENGQATFSCNTDAASLRLSCDAD-KH 92 (366)
Q Consensus 63 LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iH 92 (366)
+|+... .+-.+||..|...+|..|... -|
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 566655 457899999999999999873 44
No 13
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.56 E-value=1.3 Score=32.27 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=29.7
Q ss_pred cccccccCCCCcceeEecccccccccccccC-CCCCCcccCCCCCccccC
Q 017738 60 RMWVSAACENGQATFSCNTDAASLRLSCDAD-KHLANFLAHHHHARVPAP 108 (366)
Q Consensus 60 Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~-iHsaN~la~rH~~RvPv~ 108 (366)
+..+|+... .+-.+||..|...+|..|... -| +.| ..+||.
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H-~~~~l~ 54 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGH-HTFPTS 54 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTC-CEEECC
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCC-cEeeHH
Confidence 344677765 467899999999999999873 44 346 666654
No 14
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=76.40 E-value=0.93 Score=37.95 Aligned_cols=75 Identities=20% Similarity=0.419 Sum_probs=51.1
Q ss_pred CCcccCcccCCCCeeEEeeCCC-cccccccc--ccccccccCcCCccc--------ccccccCCCCcceeEe-ccccccc
Q 017738 16 DWMRTCNTCKAAVSTLYCHTHL-AYFCDSCD--ERVHAYNSMALPHER--------MWVSAACENGQATFSC-NTDAASL 83 (366)
Q Consensus 16 ~~~~~Cd~C~~~~A~vyC~aD~-A~LC~~CD--a~vH~aN~La~rH~R--------v~LCe~C~~~PA~v~C-~aD~a~L 83 (366)
...+.|..|+.....+|=+.+. -+||..|. .+.|..|.-..+..+ ...|..|.......|- -.+...|
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~l 82 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPV 82 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEE
T ss_pred CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCc
Confidence 4678999999988888888765 48999999 566777764332211 2359999877655544 3455689
Q ss_pred ccccccC
Q 017738 84 RLSCDAD 90 (366)
Q Consensus 84 C~sCD~~ 90 (366)
|..|-.-
T Consensus 83 CNaCgl~ 89 (115)
T 4hc9_A 83 CNACGLY 89 (115)
T ss_dssp CHHHHHH
T ss_pred chHHHHH
Confidence 9999654
No 15
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.68 E-value=4.6 Score=29.21 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=31.6
Q ss_pred cccCcccCCCCeeEEeeCCCccccccccc-cccccccCcCCccccccccc
Q 017738 18 MRTCNTCKAAVSTLYCHTHLAYFCDSCDE-RVHAYNSMALPHERMWVSAA 66 (366)
Q Consensus 18 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~aN~La~rH~Rv~LCe~ 66 (366)
.+.|..-+. +-.+||..|...+|..|-. .-|. .|..++|-+.
T Consensus 14 ~~~C~~H~e-~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea 56 (59)
T 2yrg_A 14 VDHCARHGE-KLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGP 56 (59)
T ss_dssp SSBCTTTCC-BCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSS
T ss_pred CccChhhCc-eeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHH
Confidence 467888874 7889999999999999976 4554 3666665543
No 16
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=70.05 E-value=4.4 Score=28.32 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=33.0
Q ss_pred CcccCcccCCCCeeEEeeCCCccccccccc-cccccccCcCCccccccccc
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDE-RVHAYNSMALPHERMWVSAA 66 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~aN~La~rH~Rv~LCe~ 66 (366)
....|..-+ .+-.+||..|...+|..|-. .-|. .|..++|-+.
T Consensus 7 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea 50 (53)
T 2did_A 7 GESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGP 50 (53)
T ss_dssp SCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCT
T ss_pred CCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHH
Confidence 356788887 58899999999999999976 5563 3666666554
No 17
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=67.66 E-value=1.9 Score=32.15 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=24.4
Q ss_pred cccccCCCCcceeEecccccccccccccCCC
Q 017738 62 WVSAACENGQATFSCNTDAASLRLSCDADKH 92 (366)
Q Consensus 62 ~LCe~C~~~PA~v~C~aD~a~LC~sCD~~iH 92 (366)
.+|+... .+-.+||..|...+|..|....|
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H 48 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH 48 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTT
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCC
Confidence 4677764 57789999999999999987545
No 18
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=63.04 E-value=11 Score=29.50 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=27.4
Q ss_pred CCcccccccccCCCCc---ceeEeccccc----ccccccccCCCC
Q 017738 56 LPHERMWVSAACENGQ---ATFSCNTDAA----SLRLSCDADKHL 93 (366)
Q Consensus 56 ~rH~Rv~LCe~C~~~P---A~v~C~aD~a----~LC~sCD~~iHs 93 (366)
..|..+ .|+.|...| ..+.|..|.- -||..|-...+.
T Consensus 17 ~~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~ 60 (82)
T 2fc7_A 17 VQHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60 (82)
T ss_dssp CEESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC
T ss_pred CeeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc
Confidence 345543 799999877 3588998875 699999887553
No 19
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=59.95 E-value=4.2 Score=27.01 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=25.0
Q ss_pred ccCcccCCCCeeEEeeCCCccccccccc-ccccc
Q 017738 19 RTCNTCKAAVSTLYCHTHLAYFCDSCDE-RVHAY 51 (366)
Q Consensus 19 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~a 51 (366)
..|..-+ .+-.+||..|...+|..|-. .-|..
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 3577776 47889999999999999976 45543
No 20
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.75 E-value=4.1 Score=31.30 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=39.0
Q ss_pred ccccccccCCCCcceeEeccc-ccccccccccCCCCCCcccCCCCCccccCCC
Q 017738 59 ERMWVSAACENGQATFSCNTD-AASLRLSCDADKHLANFLAHHHHARVPAPPF 110 (366)
Q Consensus 59 ~Rv~LCe~C~~~PA~v~C~aD-~a~LC~sCD~~iHsaN~la~rH~~RvPv~~~ 110 (366)
+-.+.|-+|+.. |.+.|..| .-..|..|-...|- ..--+.| +.++..+-
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~H-k~v~y~~~ 55 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEH-QTSPYHPR 55 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTC-CEECCCCS
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhcc-ceeeccCC
Confidence 456789999976 89999988 77999999999995 3445678 88887543
No 21
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.16 E-value=2 Score=31.06 Aligned_cols=28 Identities=11% Similarity=0.334 Sum_probs=22.8
Q ss_pred cccccCCCCcceeEecccccccccccccC
Q 017738 62 WVSAACENGQATFSCNTDAASLRLSCDAD 90 (366)
Q Consensus 62 ~LCe~C~~~PA~v~C~aD~a~LC~sCD~~ 90 (366)
.+|+... .+-.+||..|...+|..|...
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~ 46 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRES 46 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence 3577764 567899999999999999873
No 22
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=57.70 E-value=9.1 Score=27.46 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=35.9
Q ss_pred CcccCcccCCCCeeEEeeCCCccccccccc-cccccccCcCCcccccccccCCC
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDE-RVHAYNSMALPHERMWVSAACEN 69 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~aN~La~rH~Rv~LCe~C~~ 69 (366)
....|..-...+-.+||..|...+|..|-. .-|. .|.-++|-+....
T Consensus 7 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 7 GHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 355788885668899999999999999975 4664 3777777776554
No 23
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.65 E-value=6.9 Score=28.12 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=27.4
Q ss_pred CCcccCcccCCCCeeEEeeCCCccccccccc-cccc
Q 017738 16 DWMRTCNTCKAAVSTLYCHTHLAYFCDSCDE-RVHA 50 (366)
Q Consensus 16 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~ 50 (366)
.....|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 16 ~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 16 TDQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp CTTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 3456798886 58899999999999999975 4554
No 24
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=55.43 E-value=7.5 Score=26.70 Aligned_cols=43 Identities=21% Similarity=0.457 Sum_probs=32.2
Q ss_pred CcccCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccccc
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSA 65 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe 65 (366)
....|..-...+-.+||..|...+|..|-..-|. .|.-++|-+
T Consensus 5 ~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~e 47 (50)
T 2yvr_A 5 RTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLED 47 (50)
T ss_dssp CSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC
T ss_pred CCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHH
Confidence 3567888855688999999999999999765553 366555544
No 25
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=52.64 E-value=10 Score=28.67 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=35.6
Q ss_pred CcccCcccCCCCeeEEeeCCCccccccccc-cccccccCcCCcccccccccCCC
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDE-RVHAYNSMALPHERMWVSAACEN 69 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~aN~La~rH~Rv~LCe~C~~ 69 (366)
....|..-...+-.+||..|...+|..|-. .-|. .|.-++|-+....
T Consensus 17 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~ 64 (84)
T 2dja_A 17 RGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEK 64 (84)
T ss_dssp SCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCC
T ss_pred CCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHH
Confidence 345788886668899999999999999976 5564 3777777666543
No 26
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=51.08 E-value=7.5 Score=26.58 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=25.8
Q ss_pred cccCcccCCCCeeEEeeCCCcccccccc-cccccc
Q 017738 18 MRTCNTCKAAVSTLYCHTHLAYFCDSCD-ERVHAY 51 (366)
Q Consensus 18 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD-a~vH~a 51 (366)
...|..-...+-.+||..|...+|..|- ..-|..
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 3457766646788999999999999996 445654
No 27
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.60 E-value=11 Score=27.80 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.9
Q ss_pred cccccccCCCCcceeEeccccccccc
Q 017738 60 RMWVSAACENGQATFSCNTDAASLRL 85 (366)
Q Consensus 60 Rv~LCe~C~~~PA~v~C~aD~a~LC~ 85 (366)
+..+|.+|.. ++.+.|+.|.+..|-
T Consensus 11 ~~~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 11 STVVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCCTTTCS-CCSEECTTTCCEESS
T ss_pred CCCccCcCcC-CCeeeCCCCCCCeeC
Confidence 3447999999 999999999999986
No 28
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=50.51 E-value=16 Score=27.81 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=23.3
Q ss_pred cccccchhhhhhhhhCCC-CCcccccCC
Q 017738 317 EKKIRYASRKAYAEARPR-VKGRFARKT 343 (366)
Q Consensus 317 ~k~irY~~Rk~~A~~RpR-vkGrF~k~~ 343 (366)
.|+.-++||-..|-.|+| -.|||.+..
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 456779999999999999 789998765
No 29
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=47.29 E-value=13 Score=27.80 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=29.9
Q ss_pred cccCcccCCCCeeEEeeCCCcccccccccccccc--c-cCcCCcccccccccCCC
Q 017738 18 MRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAY--N-SMALPHERMWVSAACEN 69 (366)
Q Consensus 18 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~a--N-~La~rH~Rv~LCe~C~~ 69 (366)
...|..|+. .+...+|..|+...|.. + +|...-...|.|..|..
T Consensus 12 ~~~C~vC~~--------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGD--------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSC--------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcCCCCC--------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 356999986 34577888999988872 2 34444455677777754
No 30
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=46.89 E-value=37 Score=24.66 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=28.4
Q ss_pred CcccCcccCCCCeeEEeeCCCcccccccccccccc--cc-CcCCcccccccccCCCC
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAY--NS-MALPHERMWVSAACENG 70 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~a--N~-La~rH~Rv~LCe~C~~~ 70 (366)
....|..|+.. +...+|..|+...|.. ++ |...-.-.|.|..|...
T Consensus 8 ~~~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 46679999863 5678888999988863 11 22222234556655443
No 31
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.16 E-value=11 Score=29.64 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=32.3
Q ss_pred CCCCcccCcccCCCCeeE-----EeeCCCccccccccccccccccCcCCcccccccccCCC
Q 017738 14 PGDWMRTCNTCKAAVSTL-----YCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACEN 69 (366)
Q Consensus 14 ~~~~~~~Cd~C~~~~A~v-----yC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~ 69 (366)
.+...+.|.-|+..-..| .|....-..|..|... ..+ ..|+|-+|..
T Consensus 21 ~~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~--------~~~-~~W~C~VC~k 72 (76)
T 2csz_A 21 QHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ--------ESN-GTWRCKVCSG 72 (76)
T ss_dssp TTCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE--------CST-TCEEEHHHHS
T ss_pred cCCCccchhhhCccccccccCCCcCcccChhhccccccc--------CCC-CCEEEeeCch
Confidence 356789999999866554 4666666667766553 222 6899988854
No 32
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=40.75 E-value=29 Score=25.24 Aligned_cols=31 Identities=26% Similarity=0.665 Sum_probs=22.1
Q ss_pred CCCCCCcccCcccCCCCeeEEeeCCCccccccccccccc
Q 017738 12 GYPGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHA 50 (366)
Q Consensus 12 ~~~~~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~ 50 (366)
+.+......|..|+.. +...+|..|+...|.
T Consensus 5 ~~~~~~~~~C~vC~~~--------g~ll~CD~C~~~fH~ 35 (61)
T 2l5u_A 5 SYETDHQDYCEVCQQG--------GEIILCDTCPRAYHM 35 (61)
T ss_dssp CCSSCCCSSCTTTSCC--------SSEEECSSSSCEEEH
T ss_pred cccCCCCCCCccCCCC--------CcEEECCCCChhhhh
Confidence 3344567789999974 456677789887776
No 33
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.82 E-value=10 Score=30.76 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=27.1
Q ss_pred CCcccccccccCCCCc-------ceeEeccccccccccccc
Q 017738 56 LPHERMWVSAACENGQ-------ATFSCNTDAASLRLSCDA 89 (366)
Q Consensus 56 ~rH~Rv~LCe~C~~~P-------A~v~C~aD~a~LC~sCD~ 89 (366)
.+|.-.++|.+|...- .++.|..|+-++|..|-.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 4555678999998652 578899999999999954
No 34
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.19 E-value=7.2 Score=32.45 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=15.9
Q ss_pred cccccccccCCCCcceeEecccc-------cccccccc
Q 017738 58 HERMWVSAACENGQATFSCNTDA-------ASLRLSCD 88 (366)
Q Consensus 58 H~Rv~LCe~C~~~PA~v~C~aD~-------a~LC~sCD 88 (366)
-..|.+|+.|....-.-.|-.|. |.-|..|-
T Consensus 42 ~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 42 KRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred cceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 35566777665443333333333 45566664
No 35
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.57 E-value=6.8 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.0
Q ss_pred eeEecccccccccccccCCCC
Q 017738 73 TFSCNTDAASLRLSCDADKHL 93 (366)
Q Consensus 73 ~v~C~aD~a~LC~sCD~~iHs 93 (366)
.+.|..|...+|..||+-||.
T Consensus 30 ~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 30 VYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EECCTTTTCCBCHHHHHTTTT
T ss_pred cEECCccCcCcccchhHHHHh
Confidence 467999999999999999995
No 36
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.69 E-value=32 Score=23.73 Aligned_cols=45 Identities=20% Similarity=0.634 Sum_probs=27.4
Q ss_pred cCcccCCCCeeEEeeCCCcccccccccccccc--c-cCcCCcccccccccCCC
Q 017738 20 TCNTCKAAVSTLYCHTHLAYFCDSCDERVHAY--N-SMALPHERMWVSAACEN 69 (366)
Q Consensus 20 ~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~a--N-~La~rH~Rv~LCe~C~~ 69 (366)
.|..|+... ..+...+|..|+.-.|.. + +|...-...|.|..|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478887642 234577888999877763 2 23333344566666653
No 37
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.37 E-value=27 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.598 Sum_probs=20.7
Q ss_pred CcccCcccCCCCeeEEeeCCCcccccccccccccc
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAY 51 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~a 51 (366)
....|..|+.. +...+|..|+...|..
T Consensus 8 ~~~~C~vC~~~--------g~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 8 HEDFCSVCRKS--------GQLLMCDTCSRVYHLD 34 (56)
T ss_dssp SCCSCSSSCCS--------SCCEECSSSSCEECSS
T ss_pred CCCCCccCCCC--------CeEEEcCCCCcceECc
Confidence 46789999984 4667788999887863
No 38
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.00 E-value=13 Score=27.61 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=37.7
Q ss_pred eEEeeCCC----ccccccccccccccccC----cCCcccccccccCCCCc--ceeEecccccccccccccCC
Q 017738 30 TLYCHTHL----AYFCDSCDERVHAYNSM----ALPHERMWVSAACENGQ--ATFSCNTDAASLRLSCDADK 91 (366)
Q Consensus 30 ~vyC~aD~----A~LC~~CDa~vH~aN~L----a~rH~Rv~LCe~C~~~P--A~v~C~aD~a~LC~sCD~~i 91 (366)
.+||+.|= +..|..|+..|-. ..| ...|..-..|..|...- ...+-......+|..|...+
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 46777762 4579999888763 222 23466666788887653 23333444456888886554
No 39
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=32.54 E-value=44 Score=26.65 Aligned_cols=66 Identities=20% Similarity=0.522 Sum_probs=36.6
Q ss_pred CCcccCcccCCCCeeEEeeCCCcccccccccccccccc-CcCC--cccccccccCCCCcceeEec-------cccccccc
Q 017738 16 DWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNS-MALP--HERMWVSAACENGQATFSCN-------TDAASLRL 85 (366)
Q Consensus 16 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~-La~r--H~Rv~LCe~C~~~PA~v~C~-------aD~a~LC~ 85 (366)
.....|..|+..--. +.-.+|..|....|..=- +... ..-.|.|..|. +|. ...+.+|.
T Consensus 5 ~~~~~C~~C~~~g~~-----~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~------~C~~C~~~~~~~~ll~Cd 73 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-----LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK------VCQNCKQSGEDSKMLVCD 73 (111)
T ss_dssp CCCSCBTTTCCCCCT-----TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC------CCTTTCCCSCCTTEEECS
T ss_pred CCCCCCcCCCCCCCC-----cCCeECCCCCCCcChHHhCCccccccccCccCCcCC------cccccCccCCCCCeeECC
Confidence 456789999874211 223678888888876300 0111 12345555543 121 12477888
Q ss_pred ccccCCC
Q 017738 86 SCDADKH 92 (366)
Q Consensus 86 sCD~~iH 92 (366)
.|+..-|
T Consensus 74 ~C~~~yH 80 (111)
T 2ysm_A 74 TCDKGYH 80 (111)
T ss_dssp SSCCEEE
T ss_pred CCCcHHh
Confidence 8887766
No 40
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.38 E-value=25 Score=28.92 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCcccCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccccccCCCCcceeEeccccc--ccccccccCC
Q 017738 16 DWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAA--SLRLSCDADK 91 (366)
Q Consensus 16 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~~PA~v~C~aD~a--~LC~sCD~~i 91 (366)
.|...|..|+..-- + .+..+.|..|+.. =.++.+|+-|+..-- ...+|.| .+|..|.--|
T Consensus 30 ~M~~~CP~Cq~eL~--~--~g~~~hC~~C~~~----------f~~~a~CPdC~q~Le--vLkACGAvdYFC~~chgLi 91 (101)
T 2jne_A 30 HMELHCPQCQHVLD--Q--DNGHARCRSCGEF----------IEMKALCPDCHQPLQ--VLKACGAVDYFCQHGHGLI 91 (101)
T ss_dssp -CCCBCSSSCSBEE--E--ETTEEEETTTCCE----------EEEEEECTTTCSBCE--EEEETTEEEEEETTTTEEE
T ss_pred cccccCccCCCcce--e--cCCEEECccccch----------hhccccCcchhhHHH--HHHHhcCcchhhccCCcee
Confidence 48899999998422 2 3445669999873 256778999986432 2355643 6787775443
No 41
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=31.33 E-value=21 Score=26.29 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=31.6
Q ss_pred CcccCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccccc
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSA 65 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe 65 (366)
....|..-+ .+-.+||..|...+|..|-..-|. .|.-++|-+
T Consensus 17 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~e 58 (72)
T 2csv_A 17 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEE 58 (72)
T ss_dssp SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHH
T ss_pred ccCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHH
Confidence 356788885 688999999999999999765554 365555544
No 42
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.91 E-value=32 Score=25.42 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=38.6
Q ss_pred EEeeCCC----ccccccccccccccccC-----cCCcccccccccCCCCcc-eeEecccccccccccccCC
Q 017738 31 LYCHTHL----AYFCDSCDERVHAYNSM-----ALPHERMWVSAACENGQA-TFSCNTDAASLRLSCDADK 91 (366)
Q Consensus 31 vyC~aD~----A~LC~~CDa~vH~aN~L-----a~rH~Rv~LCe~C~~~PA-~v~C~aD~a~LC~sCD~~i 91 (366)
+||..|- +..|..|...|.....+ ...|..-..|..|...-. .-+-..+..++|..|-...
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 4 GSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred eechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 4666652 45799999888732222 245777778888876532 2344567778888876543
No 43
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.63 E-value=42 Score=24.76 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCcccccccccCCCCc---ceeEeccccc-ccccccccCCCC
Q 017738 56 LPHERMWVSAACENGQ---ATFSCNTDAA-SLRLSCDADKHL 93 (366)
Q Consensus 56 ~rH~Rv~LCe~C~~~P---A~v~C~aD~a-~LC~sCD~~iHs 93 (366)
..|. ..|+.|...| ..+.|..|.- -||..|-.....
T Consensus 8 v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~ 47 (63)
T 2e5r_A 8 VFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA 47 (63)
T ss_dssp CCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC
T ss_pred ceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc
Confidence 3465 5799999876 4578988855 599999887643
No 44
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.52 E-value=74 Score=25.18 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=19.2
Q ss_pred CCCCcccCcccCCCCeeEEeeCCCccccccccccccc
Q 017738 14 PGDWMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHA 50 (366)
Q Consensus 14 ~~~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~ 50 (366)
.+.....| .|+... ..+...+|..|+.-.|.
T Consensus 24 ~~~d~vrC-iC~~~~-----~~~~mi~Cd~C~~w~H~ 54 (98)
T 2lv9_A 24 YGTDVTRC-ICGFTH-----DDGYMICCDKCSVWQHI 54 (98)
T ss_dssp CCCCBCCC-TTSCCS-----CSSCEEEBTTTCBEEET
T ss_pred CCCCCEEe-ECCCcc-----CCCcEEEcCCCCCcCcC
Confidence 34455667 676532 12345678889888886
No 45
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.49 E-value=14 Score=27.33 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=37.2
Q ss_pred EEeeCCC----ccccccccccccccccCc-----CCcccccccccCCCCcc-eeEecccccccccccccC
Q 017738 31 LYCHTHL----AYFCDSCDERVHAYNSMA-----LPHERMWVSAACENGQA-TFSCNTDAASLRLSCDAD 90 (366)
Q Consensus 31 vyC~aD~----A~LC~~CDa~vH~aN~La-----~rH~Rv~LCe~C~~~PA-~v~C~aD~a~LC~sCD~~ 90 (366)
+||..|- +..|..|...|.....+. ..|..-..|..|...-. .-+-..+..++|..|-..
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 4 GSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHET 73 (82)
T ss_dssp CCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHH
T ss_pred cCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHH
Confidence 4555552 467999999887544321 24666667888875432 223345677778777543
No 46
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.50 E-value=15 Score=27.31 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=25.4
Q ss_pred ccCcccCCCCe---eEEeeCCCcccccccccccccc
Q 017738 19 RTCNTCKAAVS---TLYCHTHLAYFCDSCDERVHAY 51 (366)
Q Consensus 19 ~~Cd~C~~~~A---~vyC~aD~A~LC~~CDa~vH~a 51 (366)
+.|-.|...-. +.-|......+|..||.-||..
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 45888876432 3459999999999999999853
No 47
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.90 E-value=58 Score=24.30 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=33.2
Q ss_pred CccccccccccccccccC----cCCcccccccccCCCCc-ceeEe--cccccccccccccCC
Q 017738 37 LAYFCDSCDERVHAYNSM----ALPHERMWVSAACENGQ-ATFSC--NTDAASLRLSCDADK 91 (366)
Q Consensus 37 ~A~LC~~CDa~vH~aN~L----a~rH~Rv~LCe~C~~~P-A~v~C--~aD~a~LC~sCD~~i 91 (366)
.+..|..|...|.....| ...|..-..|..|...- ...|+ ..+...+|..|-...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 345566666666543333 24677777899997643 22334 467888888876543
No 48
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.51 E-value=47 Score=24.40 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=36.6
Q ss_pred EEeeCCC----ccccccccccccccccC----cCCcccccccccCCCCcc--eeEe-cccccccccccccC
Q 017738 31 LYCHTHL----AYFCDSCDERVHAYNSM----ALPHERMWVSAACENGQA--TFSC-NTDAASLRLSCDAD 90 (366)
Q Consensus 31 vyC~aD~----A~LC~~CDa~vH~aN~L----a~rH~Rv~LCe~C~~~PA--~v~C-~aD~a~LC~sCD~~ 90 (366)
.||..|= +..|..|+..|-. ..| ...|..-..|..|...-. ..+. ..+..++|..|-..
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~ 73 (81)
T 1x6a_A 4 GSSGKDYWGKFGEFCHGCSLLMTG-PFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73 (81)
T ss_dssp CCCCCCSSCCSSCBCTTTCCBCCS-CCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHH
T ss_pred ccchhHHhhhcCCcCccCCCCcCc-eEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHH
Confidence 3555542 3468888887762 222 235777778888876542 3445 46778888887543
No 49
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.04 E-value=31 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.464 Sum_probs=37.8
Q ss_pred CcccCcccCCCC-----eeEEeeCCCccccccccccccccccCcCCcccccccccCCCC
Q 017738 17 WMRTCNTCKAAV-----STLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENG 70 (366)
Q Consensus 17 ~~~~Cd~C~~~~-----A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~~ 70 (366)
....|..|...- ....|....-..|..|...+.. ++....|+|.+|...
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~-----~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN-----NRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC-----SSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCC-----CCCccceechhhHHH
Confidence 468899998755 3568999999999999887643 245788999998653
No 50
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.85 E-value=31 Score=25.83 Aligned_cols=35 Identities=11% Similarity=-0.077 Sum_probs=21.5
Q ss_pred CCcccccccccCCCCcceeEecccccccccccccC
Q 017738 56 LPHERMWVSAACENGQATFSCNTDAASLRLSCDAD 90 (366)
Q Consensus 56 ~rH~Rv~LCe~C~~~PA~v~C~aD~a~LC~sCD~~ 90 (366)
..|..-..|..|...-..-|-..+..++|..|-..
T Consensus 37 ~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 37 QWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHA 71 (80)
T ss_dssp EECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHH
T ss_pred ccccccCCcCcCCCCcCCCeEEECCEEECHHHHHH
Confidence 35666677877865433234456677777777544
No 51
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.65 E-value=28 Score=30.20 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=36.0
Q ss_pred CcccCcccCCC-----CeeEEeeCCCccccccccccccccccCcCCcccccccccCCCC
Q 017738 17 WMRTCNTCKAA-----VSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENG 70 (366)
Q Consensus 17 ~~~~Cd~C~~~-----~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~~ 70 (366)
..+.|..|... .....|.......|..|... .+....|+|.+|...
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~--------~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA--------HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC--------CSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc--------cCCCCcEeeHHHHHH
Confidence 47899999985 56788999999999999842 234678999998653
No 52
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=23.10 E-value=27 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=23.3
Q ss_pred cccccCCC---CcceeEeccccccccc-cccc
Q 017738 62 WVSAACEN---GQATFSCNTDAASLRL-SCDA 89 (366)
Q Consensus 62 ~LCe~C~~---~PA~v~C~aD~a~LC~-sCD~ 89 (366)
.+|.+|.. .++.+.|+.|.+..|- .|-.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k 43 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYR 43 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHHH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHHH
Confidence 58999985 7899999999999986 5543
No 53
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.98 E-value=77 Score=24.22 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=10.7
Q ss_pred CcccCcccCCCCeeEEeeC
Q 017738 17 WMRTCNTCKAAVSTLYCHT 35 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~a 35 (366)
....|..|...+ .++|..
T Consensus 9 ~~~~c~~C~~~~-~w~C~~ 26 (77)
T 2e6s_A 9 NDTECDLCGGDP-EKKCHS 26 (77)
T ss_dssp CCCCCTTTCSCS-SSCCSS
T ss_pred CCccChhhcCCC-CeECCC
Confidence 356677776643 566643
No 54
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=21.51 E-value=74 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=26.5
Q ss_pred ccCcccCCCCeeEEeeCCCcccccccccccccc--c-cCcCCcccccccccCCCC
Q 017738 19 RTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAY--N-SMALPHERMWVSAACENG 70 (366)
Q Consensus 19 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~a--N-~La~rH~Rv~LCe~C~~~ 70 (366)
..|..|+.. +.-.+|..|+.--|.. + +|...-.-.|.|..|...
T Consensus 3 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP--------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC--------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC--------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 358888863 4577788999888863 1 122223334566666544
No 55
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.02 E-value=54 Score=23.90 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=26.3
Q ss_pred CCcccccccccCCCCcc--eeEecccccccccccccCCC
Q 017738 56 LPHERMWVSAACENGQA--TFSCNTDAASLRLSCDADKH 92 (366)
Q Consensus 56 ~rH~Rv~LCe~C~~~PA--~v~C~aD~a~LC~sCD~~iH 92 (366)
..|..-..|..|...-. ..+-..+..++|..|.....
T Consensus 26 ~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 26 HYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp CBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred CCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 56777778999976543 34556677889999976654
No 56
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.70 E-value=90 Score=29.94 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=39.1
Q ss_pred cccCcccCCCCeeEEeeC----CC--ccccccccccccccccCcCCcccccccccCCCCcceeEeccc-----------c
Q 017738 18 MRTCNTCKAAVSTLYCHT----HL--AYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTD-----------A 80 (366)
Q Consensus 18 ~~~Cd~C~~~~A~vyC~a----D~--A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~~PA~v~C~aD-----------~ 80 (366)
...|-+||+.|..-.-+. +. -..|.-|...-| .....|..|+..-...|-..+ .
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~---------~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r 252 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH---------YVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLR 252 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE---------CCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe---------ecCcCCcCCCCCCCeeEEEecCccccCCCcceE
Confidence 469999999885544442 22 346888977444 444578889876544444222 3
Q ss_pred cccccccc
Q 017738 81 ASLRLSCD 88 (366)
Q Consensus 81 a~LC~sCD 88 (366)
+-.|..|.
T Consensus 253 ~e~C~~C~ 260 (309)
T 2fiy_A 253 AETCPSCQ 260 (309)
T ss_dssp EEEETTTT
T ss_pred EEEccccc
Confidence 56788884
No 57
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.68 E-value=48 Score=26.14 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=32.9
Q ss_pred CcccCcccCCCCeeEEeeCCCccccccccccccccccCcCCcccccccccCCCCcceeEeccccc--ccccccccCC
Q 017738 17 WMRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCNTDAA--SLRLSCDADK 91 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~~PA~v~C~aD~a--~LC~sCD~~i 91 (366)
|...|-.|+..... ...-+-|..|+..+ ....+|+-|+..- .+ |.+|.+ .+|..|.--|
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~----------~~~afCPeCgq~L-e~-lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDF----------SLQALCPDCRQPL-QV-LKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEE----------EEEEECSSSCSCC-CE-EEETTEEEECCTTTTCCC
T ss_pred CCCCCCCCCCcccc----CCCceECccccccC----------CCcccCcchhhHH-HH-HHhcCCcCeeeccCCCEe
Confidence 44567777764432 23344577776632 2334677777533 22 666643 6777775544
No 58
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.62 E-value=82 Score=25.26 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=31.8
Q ss_pred ccccccccccccccC-----cCCcccccccccCCCCc--ceeEecccccccccccccC
Q 017738 40 FCDSCDERVHAYNSM-----ALPHERMWVSAACENGQ--ATFSCNTDAASLRLSCDAD 90 (366)
Q Consensus 40 LC~~CDa~vH~aN~L-----a~rH~Rv~LCe~C~~~P--A~v~C~aD~a~LC~sCD~~ 90 (366)
.|..|...|.....+ ...|..-..|..|...- ..-|...+..++|..|-..
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~ 67 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYE 67 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHH
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHH
Confidence 677777777643222 23577777788887653 2334556777788777543
No 59
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.53 E-value=35 Score=24.12 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=29.2
Q ss_pred CccccccccccccccccC-----cCCcccccccccCCCCcce-eEecccccccccccc
Q 017738 37 LAYFCDSCDERVHAYNSM-----ALPHERMWVSAACENGQAT-FSCNTDAASLRLSCD 88 (366)
Q Consensus 37 ~A~LC~~CDa~vH~aN~L-----a~rH~Rv~LCe~C~~~PA~-v~C~aD~a~LC~sCD 88 (366)
....|..|...|.....+ ...|..-..|..|...-.. -+...+..++|..|-
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y 67 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 67 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHH
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHH
Confidence 345666676666644322 1246666678888765322 233556667776653
No 60
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=20.25 E-value=39 Score=34.98 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=16.2
Q ss_pred cccccCCCCc-----ceeEecccccccccccccC
Q 017738 62 WVSAACENGQ-----ATFSCNTDAASLRLSCDAD 90 (366)
Q Consensus 62 ~LCe~C~~~P-----A~v~C~aD~a~LC~sCD~~ 90 (366)
..|+.|+..- -.+.|..|...+-..|...
T Consensus 114 ~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 147 (674)
T 3pfq_A 114 TFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMN 147 (674)
T ss_dssp CCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSS
T ss_pred CCCCccccccchhhcCccccccCCcchhhhhhhc
Confidence 3688886542 2455666666555555443
No 61
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.02 E-value=45 Score=33.27 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=51.1
Q ss_pred CcccCcccCCCCeeEEeeCC-CccccccccccccccccCcCCcccccccccCCCCcceeEec--ccccccccccccC
Q 017738 17 WMRTCNTCKAAVSTLYCHTH-LAYFCDSCDERVHAYNSMALPHERMWVSAACENGQATFSCN--TDAASLRLSCDAD 90 (366)
Q Consensus 17 ~~~~Cd~C~~~~A~vyC~aD-~A~LC~~CDa~vH~aN~La~rH~Rv~LCe~C~~~PA~v~C~--aD~a~LC~sCD~~ 90 (366)
+...|-.|+.. ..++.+.- ...||..|-...+..+..--.------|..|......+-|. .|...+|..|-..
T Consensus 49 ~e~~C~~CG~~-~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~ 124 (386)
T 2pv0_B 49 IEDICICCGSL-QVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDS 124 (386)
T ss_dssp GGGSBTTTCCS-CCCSBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHH
T ss_pred ccceeCCCCCc-CccccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHH
Confidence 45689999985 44555543 57899999887776654332111223588888777788898 8999999999654
Done!