BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017739
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 3/194 (1%)
Query: 161 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIK 220
+++A GV RV +L+G G LL ELF R+G+GT +A + + R A D+ I
Sbjct: 262 ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIA 321
Query: 221 QIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 280
+I+PL E G L+ R+ E L + F ++E +G + CAAL F + CGE+A + VSP
Sbjct: 322 ALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSP 381
Query: 281 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRK--R 338
+ + G G++LL +I KA +G+ LF L+T T +WF RGF+ S + +PE RRK R
Sbjct: 382 QAQDGGYGERLLAHIIDKARGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYR 441
Query: 339 INLSRNSKYYMKKL 352
N RNS +++L
Sbjct: 442 SN-GRNSHILVRRL 454
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 3/194 (1%)
Query: 161 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIK 220
+++A GV RV +L+G G LL ELF R+G+GT +A + + R A D+ I
Sbjct: 262 ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIA 321
Query: 221 QIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 280
+I+PL E G L+ R+ E L + F ++E +G + CAAL F + CGE+A + VSP
Sbjct: 322 ALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSP 381
Query: 281 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRK--R 338
+ + G G++LL +I KA +G+ LF L+T T +WF RGF+ S + +PE RRK R
Sbjct: 382 QAQDGGYGERLLAHIIDKARGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYR 441
Query: 339 INLSRNSKYYMKKL 352
N RNS +++L
Sbjct: 442 SN-GRNSHILVRRL 454
>pdb|3E0K|A Chain A, Crystal Structure Of C-Termianl Domain Of
N-Acetylglutamate Synthase From Vibrio Parahaemolyticus
Length = 150
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF 265
E R A + D+ GI ++I PL E G LVRR+ E+L + + F ++E++G II CAAL+P+
Sbjct: 4 EQVRQAGIDDIGGILELIHPLEEQGILVRRSREQLEQEIGKFTIIEKDGLIIGCAALYPY 63
Query: 266 FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRE 325
+E+ E A + + P+ R +G LL+Y + ++ S ++ +F+LTT + WF+ +GF E
Sbjct: 64 SEERKAEXACVAIHPDYRDGNRGLLLLNYXKHRSKSENINQIFVLTTHSLHWFREQGFYE 123
Query: 326 CSIEMIPEERRKRINLSRNSK 346
++ +P ++ N R SK
Sbjct: 124 VGVDYLPGAKQGLYNFQRKSK 144
>pdb|2GAN|A Chain A, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32.
pdb|2GAN|B Chain B, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32
Length = 190
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 209 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF----- 263
R D +G +++ +P ++ L + D Y +++ +II AL
Sbjct: 40 RKPNPNDFNGFREVYEPFLKF---------RLSQEFDELYTYQKDNRIIGTIALVYKRIK 90
Query: 264 ---------PFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD---MLFLLT 311
EK G + V PE +G+G G LL++ K+ SLG D + F
Sbjct: 91 EKGIWWVPEELXNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKDPYVVTFPNL 150
Query: 312 TRTADWFKSRGFREC 326
+ ++ +GFRE
Sbjct: 151 EAYSYYYXKKGFREI 165
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 156 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200
G + ++ A R GV VH+++G + +LLE+F R G+GTM+
Sbjct: 233 GMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277
>pdb|2JJ4|A Chain A, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|B Chain B, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|C Chain C, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2V5H|A Chain A, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|B Chain B, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|C Chain C, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|D Chain D, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|E Chain E, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|F Chain F, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
Length = 321
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 170 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 206
+GV+ H++DG I LLLE+F G+GTM+ Y
Sbjct: 278 QGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYH 314
>pdb|2BUF|A Chain A, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|B Chain B, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|C Chain C, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|D Chain D, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|E Chain E, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|F Chain F, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|G Chain G, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|H Chain H, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|I Chain I, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|J Chain J, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|K Chain K, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|L Chain L, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
Length = 300
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 156 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202
G L ++ A + GV H++DG + +LLE+F G+GT++++
Sbjct: 250 GMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296
>pdb|2OZG|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_325469.1) From Anabaena Variabilis Atcc 29413 At
2.00 A Resolution
Length = 396
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 243 ALDSFYVVEREGQIIACAALFPFFKEKCGE------VAAIGVSPECRGQGQGDKLLDYI- 295
L++F V+ RE ++ A+ P + G+ +AA+G++PE RG G L+ +
Sbjct: 46 GLENFRVIYREQKVAGGLAILPXGQWWGGQRVPXAGIAAVGIAPEYRGDGAAIALIQHTL 105
Query: 296 -EKKAASLGLDMLFLLTTRTADWFKSRGFREC 326
E + + +L+ T R ++ G+ +
Sbjct: 106 QEISEQDIPISVLYPATQRL---YRKAGYEQA 134
>pdb|3LOD|A Chain A, The Crystal Structure Of The Putative Acyl-Coa
N-Acyltransferase From Klebsiella Pneumoniae
Subsp.Pneumoniae Mgh 78578
Length = 162
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 253 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299
+G+ + C A+ +E GE+ + + P+ RGQ G+KLL +E KA
Sbjct: 58 QGEAVGCGAIV-LSEEGFGEMKRVYIDPQHRGQQLGEKLLAALEAKA 103
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein
28
Length = 111
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MFLYMFWIRISVNVDFESLILCAFANFSTYEVATAC--ALAIEADKLICIIDG 51
F + ++R+ ++ D E CAFA F T E A C A ++EA+ +DG
Sbjct: 38 QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 275 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTAD----WFKSRGF 323
+IGVSP+ + QG G LL YI+ A G+ L L T +++ GF
Sbjct: 86 SIGVSPDFQDQGIGGSLLSYIKDXAEISGIHKLSLRVXATNQEAIRFYEKHGF 138
>pdb|1Y9K|A Chain A, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|B Chain B, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|C Chain C, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|D Chain D, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
Length = 157
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 248 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 307
YV ++ G +I L + K E+ I V+ +G+G G KLL + + A G L
Sbjct: 40 YVAKQGGSVIGVYVLLET-RPKTXEIXNIAVAEHLQGKGIGKKLLRHAVETAKGYGXSKL 98
Query: 308 FLLTTRTA----DWFKSRGFRECSIEM 330
+ T ++ ++ GFR SI+
Sbjct: 99 EVGTGNSSVSQLALYQKCGFRIFSIDF 125
>pdb|2PDO|A Chain A, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|B Chain B, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|C Chain C, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|D Chain D, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|E Chain E, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|F Chain F, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|G Chain G, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|H Chain H, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
Length = 144
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 271 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303
G +GV PE RG+G + LL+ +EKK + G
Sbjct: 70 GSAYYLGVHPEFRGRGIANALLNRLEKKLIARG 102
>pdb|3RIO|A Chain A, Crystal Structure Of Glct Cat-Prdi
Length = 180
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 283 RGQGQGDKLLDYIEKKAASLGLDMLFLLTTRT 314
+ Q Q KLLDY+++K + D+++ ++ RT
Sbjct: 68 KEQKQFKKLLDYVDEKLVDISNDVIYHISNRT 99
>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 293
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 137 WSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR-GVQRVHLLDGTIGG----VLLLELF 191
+ +QG + G+ RL LSE + F RR G ++ + G I G VL L++
Sbjct: 61 FPMKQGVMVRGRVRL-----LLSE-GHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIV 114
Query: 192 KR-----DGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRT 236
K+ DG+ T+ R + L G+K+ P++ +++RRT
Sbjct: 115 KKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRT 164
>pdb|1JSN|A Chain A, Structure Of Avian H5 Haemagglutinin Complexed With Lsta
Receptro Analog
pdb|1JSO|A Chain A, Structure Of Avian H5 Haemagglutinin Bound To Lstc
Receptor Analog
pdb|1JSM|A Chain A, Structure Of H5 Avian Haemagglutinin
Length = 325
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 201 ASDLYEGTRTAKVTDLSGIKQII--QPLVESGALVRRTDEELLKALDSFYVVEREGQI 256
A D+ E T K+ DL+G+K +I V L +E L + Y+VE++ +
Sbjct: 29 AQDILEKTHNGKLCDLNGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKDNPV 86
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD-----MLFLLTTRTADWFKSRGFR 324
CG + I V+ + +GQG G L+D + ++G D ++ + +++ GF
Sbjct: 95 CGHIEDIAVNSKYQGQGLGKLLID----QLVTIGFDYGCYKIILDCDEKNVKFYEKCGFS 150
Query: 325 ECSIEM 330
+EM
Sbjct: 151 NAGVEM 156
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 216 LSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-------EGQIIACAALFPFFKE 268
L+G+K I+QP + + + D L KA+ + E E I+ A F E
Sbjct: 1413 LNGLK-IVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETA-----FLE 1466
Query: 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTA--DWF 318
+ + A P+ + DKLL+ + K SLGL LL T DWF
Sbjct: 1467 RMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGL----LLDTEQELYDWF 1514
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD-----MLFLLTTRTADWFKSRGFR 324
CG + I V+ + +GQG G L+D + ++G D ++ + +++ GF
Sbjct: 96 CGHIEDIAVNSKYQGQGLGKLLID----QLVTIGFDYGCYKIILDCDEKNVKFYEKCGFS 151
Query: 325 ECSIEM 330
+EM
Sbjct: 152 NAGVEM 157
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 216 LSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-------EGQIIACAALFPFFKE 268
L+G+K I+QP + + + D L KA+ + E E I+ A F E
Sbjct: 1632 LNGLK-IVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETA-----FLE 1685
Query: 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTA--DWF 318
+ + A P+ + DKLL+ + K SLGL LL T DWF
Sbjct: 1686 RMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGL----LLDTEQELYDWF 1733
>pdb|2AP9|A Chain A, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|B Chain B, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|C Chain C, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|D Chain D, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|E Chain E, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|F Chain F, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
Length = 299
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 171 GVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200
GV H++DG + +L+ELF G GT V
Sbjct: 259 GVPSAHIIDGRVTHCVLVELFTDAGTGTKV 288
>pdb|2REE|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REE|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REF|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
pdb|2REF|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
Length = 224
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 264 PFFKEKCGEVA---AIGVSPECRGQGQGDKLLDYIEKKAASLG 303
P + G V A+ + PE + QG GD+LL+++ + A +
Sbjct: 89 PLLHTESGVVVQLLAVNILPELQNQGLGDRLLEFMLQYCAQIS 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,820,358
Number of Sequences: 62578
Number of extensions: 374237
Number of successful extensions: 880
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 30
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)