Query 017739
Match_columns 366
No_of_seqs 309 out of 2657
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 1.4E-67 3E-72 539.2 31.2 341 10-353 162-515 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 5.3E-46 1.1E-50 376.5 27.4 265 12-352 155-429 (429)
3 PRK05279 N-acetylglutamate syn 100.0 1.3E-43 2.9E-48 360.1 27.5 268 13-352 164-441 (441)
4 COG1246 ArgA N-acetylglutamate 100.0 2.7E-28 5.8E-33 211.2 10.4 146 207-352 2-148 (153)
5 KOG2436 Acetylglutamate kinase 99.9 7.3E-25 1.6E-29 218.4 -1.0 276 9-291 228-518 (520)
6 PRK04531 acetylglutamate kinas 99.9 5E-21 1.1E-25 191.8 16.6 220 10-318 122-356 (398)
7 COG0548 ArgB Acetylglutamate k 99.9 7.3E-22 1.6E-26 186.3 9.9 116 11-201 137-264 (265)
8 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.7 3.6E-18 7.9E-23 164.2 10.2 115 12-200 156-280 (280)
9 cd04236 AAK_NAGS-Urea AAK_NAGS 99.7 3.8E-18 8.3E-23 162.8 7.8 114 11-200 147-271 (271)
10 PRK07757 acetyltransferase; Pr 99.7 8.5E-16 1.9E-20 133.0 17.3 134 206-341 2-135 (152)
11 PRK10146 aminoalkylphosphonic 99.7 5.5E-16 1.2E-20 132.3 12.7 124 205-328 3-138 (144)
12 CHL00202 argB acetylglutamate 99.7 3.3E-16 7.1E-21 151.0 10.5 114 13-201 157-283 (284)
13 cd04252 AAK_NAGK-fArgBP AAK_NA 99.6 5.7E-16 1.2E-20 146.6 9.5 112 11-200 124-248 (248)
14 PRK07922 N-acetylglutamate syn 99.6 9.4E-15 2E-19 130.3 15.2 124 205-330 5-129 (169)
15 PTZ00330 acetyltransferase; Pr 99.6 1.8E-14 3.9E-19 123.4 15.4 123 206-328 7-141 (147)
16 PRK00942 acetylglutamate kinas 99.6 5E-15 1.1E-19 142.6 10.2 116 12-202 157-282 (283)
17 PRK12308 bifunctional arginino 99.6 3.2E-14 7E-19 150.6 17.1 134 206-341 464-597 (614)
18 TIGR03827 GNAT_ablB putative b 99.6 1E-13 2.2E-18 132.2 16.0 123 206-329 116-246 (266)
19 PF13527 Acetyltransf_9: Acety 99.6 3.4E-14 7.5E-19 119.0 11.3 119 207-326 1-127 (127)
20 PRK03624 putative acetyltransf 99.6 1.1E-13 2.5E-18 116.2 14.3 121 206-331 3-133 (140)
21 PLN02512 acetylglutamate kinas 99.5 2.1E-14 4.6E-19 140.0 10.5 115 12-201 181-308 (309)
22 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.5 3E-14 6.6E-19 136.9 9.8 113 13-200 154-279 (279)
23 cd04238 AAK_NAGK-like AAK_NAGK 99.5 5E-14 1.1E-18 133.7 9.8 114 12-200 133-256 (256)
24 PHA00673 acetyltransferase dom 99.5 4.4E-13 9.5E-18 117.7 14.4 120 209-328 10-146 (154)
25 PF13673 Acetyltransf_10: Acet 99.5 6.1E-13 1.3E-17 109.3 14.0 103 215-323 1-117 (117)
26 PLN02706 glucosamine 6-phospha 99.5 3.7E-13 8E-18 116.2 13.1 121 205-328 6-144 (150)
27 PRK09491 rimI ribosomal-protei 99.5 7.5E-13 1.6E-17 113.9 14.3 118 206-329 2-126 (146)
28 PF00583 Acetyltransf_1: Acety 99.5 5E-13 1.1E-17 103.3 11.7 75 250-324 1-83 (83)
29 TIGR02382 wecD_rffC TDP-D-fuco 99.5 7.4E-13 1.6E-17 119.9 13.4 123 206-329 44-186 (191)
30 PRK10140 putative acetyltransf 99.5 2.2E-12 4.8E-17 111.9 15.1 123 206-329 4-142 (162)
31 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.4 2.8E-13 6E-18 128.4 9.6 111 13-200 132-252 (252)
32 KOG3216 Diamine acetyltransfer 99.4 2.8E-12 6.1E-17 110.8 14.9 124 205-328 3-146 (163)
33 TIGR02406 ectoine_EctA L-2,4-d 99.4 1.3E-12 2.8E-17 114.9 13.0 120 208-327 1-127 (157)
34 PRK10975 TDP-fucosamine acetyl 99.4 2.4E-12 5.2E-17 116.7 14.9 124 205-329 46-189 (194)
35 PF13523 Acetyltransf_8: Acety 99.4 1.4E-12 2.9E-17 113.0 12.7 127 208-334 1-147 (152)
36 PRK09831 putative acyltransfer 99.4 1.4E-12 3.1E-17 112.7 12.7 114 207-330 2-128 (147)
37 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.4 3.9E-13 8.5E-18 127.8 9.5 108 12-200 140-257 (257)
38 PRK14058 acetylglutamate/acety 99.4 8.4E-13 1.8E-17 126.3 10.1 111 12-202 144-267 (268)
39 PF13420 Acetyltransf_4: Acety 99.4 1.1E-11 2.4E-16 107.1 16.1 121 208-329 1-140 (155)
40 PF13508 Acetyltransf_7: Acety 99.4 4.8E-12 1E-16 98.1 12.2 76 245-325 3-79 (79)
41 TIGR01575 rimI ribosomal-prote 99.4 3.5E-12 7.6E-17 106.0 11.9 109 215-329 1-117 (131)
42 COG1247 Sortase and related ac 99.4 9.6E-12 2.1E-16 110.8 13.9 124 206-330 2-145 (169)
43 PRK12352 putative carbamate ki 99.4 1.8E-12 3.8E-17 126.5 9.9 112 12-202 181-315 (316)
44 PRK10514 putative acetyltransf 99.4 1.1E-11 2.4E-16 106.0 12.8 116 206-330 2-128 (145)
45 COG3153 Predicted acetyltransf 99.3 4.2E-11 9.2E-16 106.8 15.5 149 205-361 3-159 (171)
46 PRK10314 putative acyltransfer 99.3 1.1E-11 2.3E-16 108.9 11.5 120 208-329 9-135 (153)
47 KOG3139 N-acetyltransferase [G 99.3 6.2E-11 1.3E-15 103.5 15.4 99 245-350 55-161 (165)
48 TIGR03103 trio_acet_GNAT GNAT- 99.3 2E-11 4.3E-16 127.7 14.1 121 206-330 83-219 (547)
49 COG0456 RimI Acetyltransferase 99.3 2.4E-11 5.2E-16 107.0 12.5 125 203-329 9-155 (177)
50 TIGR01686 FkbH FkbH-like domai 99.3 6.7E-11 1.5E-15 115.8 15.3 121 204-326 185-319 (320)
51 cd04241 AAK_FomA-like AAK_FomA 99.3 7.5E-12 1.6E-16 118.4 7.7 118 11-200 121-252 (252)
52 PRK10151 ribosomal-protein-L7/ 99.3 2.5E-10 5.4E-15 101.6 16.8 126 203-329 8-156 (179)
53 PRK15130 spermidine N1-acetylt 99.2 1.9E-10 4E-15 103.0 14.6 124 205-329 6-146 (186)
54 PRK01346 hypothetical protein; 99.2 8.7E-11 1.9E-15 118.4 13.7 123 204-328 5-136 (411)
55 TIGR00761 argB acetylglutamate 99.2 2.1E-11 4.5E-16 114.0 8.4 64 11-74 129-203 (231)
56 TIGR03585 PseH pseudaminic aci 99.2 1.3E-10 2.7E-15 100.4 12.2 121 207-329 2-139 (156)
57 TIGR03448 mycothiol_MshD mycot 99.2 5.2E-10 1.1E-14 107.1 16.7 123 206-328 150-288 (292)
58 PRK10562 putative acetyltransf 99.2 2.3E-10 4.9E-15 98.5 12.5 113 208-330 2-127 (145)
59 cd02169 Citrate_lyase_ligase C 99.2 9.4E-11 2E-15 113.7 10.8 76 246-327 7-83 (297)
60 TIGR03448 mycothiol_MshD mycot 99.2 2.8E-10 6.2E-15 109.0 13.6 115 209-327 4-127 (292)
61 PRK10809 ribosomal-protein-S5- 99.2 1.2E-09 2.6E-14 98.6 15.3 124 205-329 17-167 (194)
62 PHA01807 hypothetical protein 99.1 6.1E-10 1.3E-14 98.1 12.7 111 210-320 8-135 (153)
63 cd02115 AAK Amino Acid Kinases 99.1 1E-10 2.2E-15 109.7 8.0 97 22-200 145-248 (248)
64 KOG3396 Glucosamine-phosphate 99.1 5.6E-10 1.2E-14 94.8 11.6 120 206-328 7-144 (150)
65 PF13302 Acetyltransf_3: Acety 99.1 1.1E-09 2.5E-14 92.6 13.6 118 206-324 2-142 (142)
66 PRK13688 hypothetical protein; 99.1 4.1E-10 8.9E-15 99.5 10.1 107 206-329 18-134 (156)
67 TIGR00124 cit_ly_ligase [citra 99.1 1.8E-09 3.8E-14 106.4 13.7 82 242-329 28-110 (332)
68 TIGR00746 arcC carbamate kinas 99.0 9.4E-10 2E-14 107.2 10.1 113 10-201 175-309 (310)
69 PF00696 AA_kinase: Amino acid 98.9 2.7E-09 5.8E-14 99.7 7.8 65 10-74 127-211 (242)
70 PRK12454 carbamate kinase-like 98.9 6.4E-09 1.4E-13 101.2 8.9 101 22-201 203-312 (313)
71 COG2153 ElaA Predicted acyltra 98.8 6.3E-08 1.4E-12 83.4 10.0 92 239-330 44-138 (155)
72 cd04242 AAK_G5K_ProB AAK_G5K_P 98.7 3E-08 6.4E-13 94.0 8.8 105 22-200 137-250 (251)
73 PRK12353 putative amino acid k 98.7 5.1E-08 1.1E-12 95.5 10.0 49 26-74 211-264 (314)
74 KOG3397 Acetyltransferases [Ge 98.7 1.7E-07 3.6E-12 82.9 11.0 116 213-328 18-141 (225)
75 KOG2488 Acetyltransferase (GNA 98.7 1.2E-07 2.7E-12 85.0 10.2 117 214-330 54-184 (202)
76 PF08445 FR47: FR47-like prote 98.7 2.8E-07 6E-12 73.3 11.2 58 271-329 22-83 (86)
77 PRK09411 carbamate kinase; Rev 98.6 1.1E-07 2.3E-12 91.8 9.1 52 22-73 195-251 (297)
78 cd04301 NAT_SF N-Acyltransfera 98.6 4E-07 8.8E-12 64.5 8.9 62 248-309 2-64 (65)
79 COG3393 Predicted acetyltransf 98.6 3.6E-07 7.8E-12 86.1 10.6 78 250-328 182-262 (268)
80 KOG3235 Subunit of the major N 98.6 1.2E-07 2.6E-12 82.8 6.6 123 207-329 3-136 (193)
81 PRK05429 gamma-glutamyl kinase 98.6 1.9E-07 4.1E-12 93.5 8.9 108 22-203 146-262 (372)
82 cd04256 AAK_P5CS_ProBA AAK_P5C 98.6 3.5E-07 7.5E-12 88.4 10.2 104 23-200 172-283 (284)
83 KOG3138 Predicted N-acetyltran 98.5 1.6E-07 3.4E-12 85.0 6.0 123 205-328 16-152 (187)
84 PRK12686 carbamate kinase; Rev 98.4 9.9E-07 2.1E-11 86.1 9.8 49 26-74 209-262 (312)
85 COG1670 RimL Acetyltransferase 98.4 4E-06 8.7E-11 73.3 12.9 124 207-331 11-161 (187)
86 TIGR01211 ELP3 histone acetylt 98.4 1.6E-06 3.5E-11 90.2 11.1 77 253-329 422-517 (522)
87 KOG3234 Acetyltransferase, (GN 98.4 1.1E-06 2.4E-11 76.6 7.4 121 207-327 3-130 (173)
88 PF14542 Acetyltransf_CG: GCN5 98.4 5.7E-06 1.2E-10 64.7 10.5 70 249-321 3-72 (78)
89 PF13718 GNAT_acetyltr_2: GNAT 98.3 5.3E-06 1.1E-10 75.8 11.5 103 245-352 27-195 (196)
90 COG3053 CitC Citrate lyase syn 98.3 7E-06 1.5E-10 78.3 12.5 108 207-327 5-114 (352)
91 cd04235 AAK_CK AAK_CK: Carbama 98.3 2.2E-06 4.7E-11 83.6 8.7 63 12-74 176-260 (308)
92 PRK12314 gamma-glutamyl kinase 98.3 2.8E-06 6E-11 81.4 9.2 103 25-202 153-264 (266)
93 cd04240 AAK_UC AAK_UC: Unchara 98.3 2E-06 4.3E-11 79.2 7.9 49 21-69 108-157 (203)
94 COG3981 Predicted acetyltransf 98.3 6.5E-06 1.4E-10 73.0 10.1 122 207-329 5-160 (174)
95 TIGR02076 pyrH_arch uridylate 98.2 4.8E-06 1E-10 77.3 9.2 60 14-73 100-168 (221)
96 PRK12354 carbamate kinase; Rev 98.2 5.9E-06 1.3E-10 80.4 8.9 99 22-203 194-301 (307)
97 PF04768 DUF619: Protein of un 98.2 8E-06 1.7E-10 73.2 9.0 132 186-325 2-143 (170)
98 TIGR01027 proB glutamate 5-kin 98.2 8.1E-06 1.8E-10 81.6 9.3 102 28-202 144-253 (363)
99 PRK13402 gamma-glutamyl kinase 98.1 6.8E-06 1.5E-10 82.2 8.2 101 28-202 148-257 (368)
100 COG3818 Predicted acetyltransf 98.1 7.5E-06 1.6E-10 69.5 7.1 130 204-335 6-155 (167)
101 PTZ00489 glutamate 5-kinase; P 98.1 1.5E-05 3.2E-10 76.3 9.8 107 22-202 142-259 (264)
102 cd04253 AAK_UMPK-PyrH-Pf AAK_U 98.1 1.8E-05 3.9E-10 73.6 9.2 63 11-73 97-168 (221)
103 cd04261 AAK_AKii-LysC-BS AAK_A 98.0 1.4E-05 3E-10 75.2 8.1 60 14-73 123-202 (239)
104 cd04255 AAK_UMPK-MosAB AAK_UMP 98.0 1.5E-05 3.2E-10 76.3 8.1 50 23-72 157-213 (262)
105 cd04246 AAK_AK-DapG-like AAK_A 98.0 1.5E-05 3.2E-10 75.0 7.9 62 12-73 121-202 (239)
106 cd04260 AAK_AKi-DapG-BS AAK_AK 98.0 1.8E-05 3.9E-10 74.8 8.3 64 12-75 126-209 (244)
107 TIGR01092 P5CS delta l-pyrroli 97.9 4E-05 8.6E-10 83.0 9.5 107 25-204 165-277 (715)
108 PLN02418 delta-1-pyrroline-5-c 97.9 6.1E-05 1.3E-09 81.6 10.3 108 25-205 173-286 (718)
109 PF12568 DUF3749: Acetyltransf 97.9 0.00031 6.7E-09 59.7 12.1 103 211-326 10-123 (128)
110 PF12746 GNAT_acetyltran: GNAT 97.9 0.00034 7.3E-09 67.0 13.7 91 236-329 157-248 (265)
111 COG2388 Predicted acetyltransf 97.8 8.9E-05 1.9E-09 60.6 7.9 67 244-311 14-80 (99)
112 cd04239 AAK_UMPK-like AAK_UMPK 97.8 8.8E-05 1.9E-09 69.3 8.0 61 12-73 113-185 (229)
113 COG1444 Predicted P-loop ATPas 97.7 0.00056 1.2E-08 73.6 13.9 78 270-353 531-611 (758)
114 cd04234 AAK_AK AAK_AK: Amino A 97.7 9.3E-05 2E-09 69.1 7.1 62 13-74 108-190 (227)
115 COG4552 Eis Predicted acetyltr 97.6 8.3E-05 1.8E-09 72.8 5.5 83 245-328 39-127 (389)
116 PF04958 AstA: Arginine N-succ 97.5 0.00048 1E-08 68.0 8.9 146 206-355 2-211 (342)
117 PF08444 Gly_acyl_tr_C: Aralky 97.5 0.00034 7.3E-09 56.0 6.3 72 249-326 3-78 (89)
118 PRK00358 pyrH uridylate kinase 97.5 0.00052 1.1E-08 64.1 8.5 58 12-69 115-183 (231)
119 COG0454 WecD Histone acetyltra 97.4 0.00024 5.1E-09 54.1 5.1 44 276-323 87-130 (156)
120 PRK08210 aspartate kinase I; R 97.3 0.00025 5.4E-09 71.8 4.9 66 12-77 128-213 (403)
121 TIGR03694 exosort_acyl putativ 97.3 0.0034 7.5E-08 59.3 11.9 121 207-327 9-197 (241)
122 PF13480 Acetyltransf_6: Acety 97.2 0.0077 1.7E-07 50.3 12.5 99 211-311 26-135 (142)
123 PRK10456 arginine succinyltran 97.2 0.0012 2.5E-08 65.2 8.1 88 206-293 2-142 (344)
124 KOG4144 Arylalkylamine N-acety 97.2 0.00031 6.8E-09 61.4 3.4 122 206-332 12-165 (190)
125 cd04244 AAK_AK-LysC-like AAK_A 97.2 0.0016 3.4E-08 63.5 8.6 53 22-74 199-261 (298)
126 PF00765 Autoind_synth: Autoin 97.1 0.0055 1.2E-07 55.5 10.8 115 214-328 8-155 (182)
127 COG1608 Predicted archaeal kin 97.1 0.0023 4.9E-08 60.0 8.2 103 27-201 147-251 (252)
128 TIGR00657 asp_kinases aspartat 97.1 0.0018 3.8E-08 66.4 8.2 53 22-74 183-245 (441)
129 TIGR03244 arg_catab_AstA argin 97.0 0.0024 5.2E-08 62.9 7.8 86 208-293 2-140 (336)
130 PRK06635 aspartate kinase; Rev 96.9 0.0011 2.4E-08 67.0 5.0 62 14-75 125-206 (404)
131 TIGR03245 arg_AOST_alph argini 96.9 0.0026 5.7E-08 62.5 7.4 86 208-293 2-141 (336)
132 TIGR03243 arg_catab_AOST argin 96.8 0.0032 6.9E-08 61.9 7.4 86 208-293 2-140 (335)
133 TIGR00656 asp_kin_monofn aspar 96.8 0.0016 3.4E-08 65.8 5.2 66 12-77 124-209 (401)
134 PRK13834 putative autoinducer 96.8 0.022 4.7E-07 52.7 12.1 114 214-327 16-164 (207)
135 cd04254 AAK_UMPK-PyrH-Ec UMP k 96.8 0.0043 9.3E-08 58.1 7.6 59 11-69 114-183 (231)
136 PRK06291 aspartate kinase; Pro 96.7 0.0052 1.1E-07 63.5 8.0 60 14-73 185-264 (465)
137 TIGR02075 pyrH_bact uridylate 96.6 0.0089 1.9E-07 56.1 8.5 57 14-70 118-186 (233)
138 PRK14558 pyrH uridylate kinase 96.5 0.0068 1.5E-07 56.7 7.1 62 11-72 112-184 (231)
139 KOG4135 Predicted phosphogluco 96.4 0.059 1.3E-06 47.1 11.5 124 206-329 14-171 (185)
140 PF06852 DUF1248: Protein of u 96.4 0.03 6.5E-07 50.7 10.1 81 248-328 49-137 (181)
141 PRK08841 aspartate kinase; Val 96.3 0.005 1.1E-07 62.3 5.0 63 13-75 124-206 (392)
142 PRK14557 pyrH uridylate kinase 96.3 0.014 3E-07 55.5 7.6 60 10-69 118-189 (247)
143 COG0549 ArcC Carbamate kinase 96.0 0.028 6.1E-07 54.1 8.2 96 27-201 211-311 (312)
144 PRK07431 aspartate kinase; Pro 95.9 0.0097 2.1E-07 63.2 5.2 49 28-76 154-209 (587)
145 COG3916 LasI N-acyl-L-homoseri 95.8 0.086 1.9E-06 48.5 10.0 115 214-328 15-163 (209)
146 PRK08373 aspartate kinase; Val 95.5 0.021 4.6E-07 56.7 5.2 61 13-73 163-242 (341)
147 COG0263 ProB Glutamate 5-kinas 95.3 0.064 1.4E-06 53.1 8.0 45 156-202 215-259 (369)
148 COG3138 AstA Arginine/ornithin 95.3 0.032 6.9E-07 53.5 5.6 85 206-291 2-140 (336)
149 cd04259 AAK_AK-DapDC AAK_AK-Da 95.3 0.076 1.6E-06 51.8 8.4 47 28-74 205-258 (295)
150 COG1243 ELP3 Histone acetyltra 95.2 0.025 5.5E-07 57.6 4.7 51 279-329 459-510 (515)
151 PRK14556 pyrH uridylate kinase 95.1 0.081 1.8E-06 50.3 7.6 61 9-69 128-199 (249)
152 COG5628 Predicted acetyltransf 95.1 0.11 2.4E-06 43.9 7.4 80 243-324 35-119 (143)
153 COG3882 FkbH Predicted enzyme 94.9 0.061 1.3E-06 55.2 6.6 123 204-328 412-550 (574)
154 TIGR02078 AspKin_pair Pyrococc 94.8 0.045 9.7E-07 54.1 5.4 45 28-72 180-231 (327)
155 PF02799 NMT_C: Myristoyl-CoA: 94.4 0.6 1.3E-05 42.6 11.1 116 207-327 30-164 (190)
156 KOG1154 Gamma-glutamyl kinase 94.3 0.063 1.4E-06 50.4 4.7 45 156-202 231-275 (285)
157 TIGR03019 pepcterm_femAB FemAB 94.3 0.53 1.1E-05 46.1 11.6 115 213-329 157-282 (330)
158 KOG2036 Predicted P-loop ATPas 93.7 0.19 4.1E-06 53.8 7.4 84 270-358 614-750 (1011)
159 cd04264 DUF619-NAGS DUF619 dom 93.6 0.27 5.8E-06 40.2 6.7 66 248-318 11-80 (99)
160 PF13880 Acetyltransf_13: ESCO 93.4 0.11 2.5E-06 39.7 3.8 30 270-299 5-34 (70)
161 PF01853 MOZ_SAS: MOZ/SAS fami 93.1 0.32 6.9E-06 44.3 6.9 48 255-303 66-113 (188)
162 PF01233 NMT: Myristoyl-CoA:pr 92.3 0.8 1.7E-05 40.6 8.2 56 252-307 86-147 (162)
163 PRK01305 arginyl-tRNA-protein 92.3 2.8 6E-05 39.8 12.4 93 217-311 106-208 (240)
164 KOG2779 N-myristoyl transferas 91.8 2 4.2E-05 42.8 10.9 117 206-327 261-396 (421)
165 cd04265 DUF619-NAGS-U DUF619 d 91.7 0.73 1.6E-05 37.7 6.7 64 250-318 14-80 (99)
166 cd04243 AAK_AK-HSDH-like AAK_A 91.2 0.37 8E-06 46.9 5.4 54 22-75 194-257 (293)
167 PF04377 ATE_C: Arginine-tRNA- 90.7 5.1 0.00011 34.3 11.4 72 236-309 24-101 (128)
168 PLN03238 probable histone acet 90.6 0.61 1.3E-05 45.1 6.2 48 255-303 141-188 (290)
169 PF13444 Acetyltransf_5: Acety 90.3 0.29 6.2E-06 39.7 3.2 48 245-292 31-100 (101)
170 KOG2535 RNA polymerase II elon 89.8 0.44 9.5E-06 47.2 4.5 49 281-329 498-548 (554)
171 PRK08961 bifunctional aspartat 89.7 1.1 2.4E-05 49.9 8.3 47 28-74 214-267 (861)
172 PTZ00064 histone acetyltransfe 89.5 0.68 1.5E-05 47.9 5.8 48 255-303 370-417 (552)
173 PLN03239 histone acetyltransfe 88.9 0.94 2E-05 45.0 6.0 48 255-303 199-246 (351)
174 PRK14852 hypothetical protein; 88.5 2.7 5.9E-05 47.2 10.0 121 208-328 31-181 (989)
175 PLN00104 MYST -like histone ac 87.7 0.67 1.5E-05 47.5 4.3 57 246-303 279-339 (450)
176 COG2401 ABC-type ATPase fused 87.0 0.45 9.9E-06 48.5 2.7 59 269-327 240-307 (593)
177 cd04245 AAK_AKiii-YclM-BS AAK_ 86.8 1 2.3E-05 43.7 5.0 53 22-74 189-251 (288)
178 COG3375 Uncharacterized conser 86.5 6.3 0.00014 37.0 9.6 101 211-311 9-115 (266)
179 cd04257 AAK_AK-HSDH AAK_AK-HSD 85.9 1.4 3E-05 42.9 5.4 45 29-73 205-256 (294)
180 PF09924 DUF2156: Uncharacteri 84.5 12 0.00026 36.0 11.2 102 207-311 134-246 (299)
181 COG5630 ARG2 Acetylglutamate s 84.3 3.1 6.7E-05 41.8 6.9 104 214-325 345-457 (495)
182 KOG2747 Histone acetyltransfer 84.0 1.3 2.8E-05 44.7 4.2 33 271-303 261-293 (396)
183 PRK09436 thrA bifunctional asp 83.5 4.7 0.0001 44.8 8.8 45 29-73 207-258 (819)
184 cd04247 AAK_AK-Hom3 AAK_AK-Hom 83.5 2.2 4.8E-05 41.9 5.6 46 29-74 215-267 (306)
185 cd04258 AAK_AKiii-LysC-EC AAK_ 82.5 2.5 5.4E-05 41.2 5.5 47 29-75 203-256 (292)
186 TIGR03827 GNAT_ablB putative b 81.8 6.5 0.00014 37.3 8.0 65 285-357 20-85 (266)
187 PRK09084 aspartate kinase III; 80.2 3.1 6.6E-05 43.0 5.5 55 22-76 189-253 (448)
188 PF05301 Mec-17: Touch recepto 77.3 2.2 4.9E-05 36.0 2.8 48 272-320 48-97 (120)
189 PF12261 T_hemolysin: Thermost 76.9 13 0.00029 33.6 8.0 97 251-352 41-172 (179)
190 PRK05925 aspartate kinase; Pro 74.3 5.3 0.00012 41.2 5.3 47 28-74 189-242 (440)
191 KOG4601 Uncharacterized conser 73.5 21 0.00046 33.6 8.4 117 207-324 22-164 (264)
192 PHA01733 hypothetical protein 72.1 18 0.00038 32.0 7.2 117 207-328 4-132 (153)
193 COG0528 PyrH Uridylate kinase 70.9 22 0.00047 33.6 8.0 65 9-73 117-193 (238)
194 KOG2779 N-myristoyl transferas 69.2 11 0.00025 37.6 5.9 56 251-306 142-203 (421)
195 PRK09034 aspartate kinase; Rev 68.2 10 0.00022 39.2 5.7 48 28-75 198-252 (454)
196 cd04248 AAK_AK-Ectoine AAK_AK- 65.4 12 0.00026 36.7 5.3 46 29-74 214-267 (304)
197 COG0527 LysC Aspartokinases [A 64.2 13 0.00029 38.4 5.7 47 29-75 199-252 (447)
198 COG2935 Putative arginyl-tRNA: 64.1 99 0.0021 29.5 10.8 101 207-311 99-215 (253)
199 PF11124 Pho86: Inorganic phos 63.6 50 0.0011 32.4 9.1 89 245-333 169-277 (304)
200 KOG2696 Histone acetyltransfer 60.4 13 0.00028 37.3 4.5 55 256-310 200-258 (403)
201 PF02474 NodA: Nodulation prot 60.1 22 0.00047 32.2 5.4 52 270-322 85-137 (196)
202 PRK09181 aspartate kinase; Val 60.0 16 0.00034 38.1 5.4 47 29-75 220-274 (475)
203 COG2054 Uncharacterized archae 59.8 11 0.00024 34.4 3.6 47 23-69 112-161 (212)
204 PRK09466 metL bifunctional asp 59.6 16 0.00036 40.6 5.7 48 29-76 210-264 (810)
205 cd04266 DUF619-NAGS-FABP DUF61 58.6 41 0.00088 28.0 6.5 64 251-318 15-87 (108)
206 KOG3698 Hyaluronoglucosaminida 58.4 25 0.00054 37.4 6.3 127 203-329 677-879 (891)
207 PF04339 DUF482: Protein of un 57.1 1.5E+02 0.0033 29.9 11.6 115 211-330 210-331 (370)
208 PLN02551 aspartokinase 56.2 20 0.00044 37.8 5.5 46 29-74 258-310 (521)
209 COG5027 SAS2 Histone acetyltra 51.9 7.3 0.00016 38.7 1.2 54 246-300 235-292 (395)
210 PF07395 Mig-14: Mig-14; Inte 51.6 85 0.0018 30.2 8.3 103 207-309 128-243 (264)
211 PHA02769 hypothetical protein; 47.2 15 0.00032 30.9 2.2 43 287-329 93-140 (154)
212 cd03173 DUF619-like DUF619 dom 44.0 76 0.0016 25.9 5.8 60 253-318 17-79 (98)
213 KOG3014 Protein involved in es 43.9 1.4E+02 0.0031 28.5 8.3 31 269-299 182-212 (257)
214 COG5092 NMT1 N-myristoyl trans 43.7 1E+02 0.0022 30.6 7.5 122 206-327 259-413 (451)
215 PF09390 DUF1999: Protein of u 43.4 2.3E+02 0.005 24.9 12.9 120 207-327 2-140 (161)
216 COG2898 Uncharacterized conser 41.9 1E+02 0.0023 32.7 7.9 65 246-311 394-458 (538)
217 PRK15312 antimicrobial resista 40.2 1.5E+02 0.0033 29.0 8.2 102 207-308 156-272 (298)
218 COG3473 Maleate cis-trans isom 36.3 70 0.0015 29.9 5.0 35 295-329 109-150 (238)
219 PF08901 DUF1847: Protein of u 35.8 83 0.0018 27.9 5.2 37 292-328 43-87 (157)
220 PRK02983 lysS lysyl-tRNA synth 35.2 2.1E+02 0.0045 33.3 9.6 59 251-311 427-485 (1094)
221 PF02388 FemAB: FemAB family; 34.9 5E+02 0.011 26.3 12.4 56 254-311 302-357 (406)
222 cd04263 DUF619-NAGK-FABP DUF61 34.8 1.4E+02 0.003 24.4 6.0 42 258-299 21-62 (98)
223 PHA00432 internal virion prote 34.3 88 0.0019 27.2 5.0 111 207-328 2-121 (137)
224 TIGR02990 ectoine_eutA ectoine 32.9 1E+02 0.0022 29.1 5.7 40 291-330 107-153 (239)
225 cd08353 Glo_EDI_BRP_like_7 Thi 32.3 1.4E+02 0.0031 24.5 6.0 30 304-333 4-36 (142)
226 PF04339 DUF482: Protein of un 31.8 3.3E+02 0.0071 27.6 9.4 81 246-326 45-158 (370)
227 COG5092 NMT1 N-myristoyl trans 29.6 2.2E+02 0.0048 28.3 7.4 100 207-306 83-201 (451)
228 PRK00756 acyltransferase NodA; 28.7 1.3E+02 0.0027 27.2 5.1 42 269-311 84-125 (196)
229 PF11305 DUF3107: Protein of u 28.1 77 0.0017 24.6 3.3 26 26-51 19-45 (74)
230 PF02388 FemAB: FemAB family; 24.5 3.2E+02 0.0069 27.7 8.0 118 230-354 17-160 (406)
231 PF00411 Ribosomal_S11: Riboso 23.2 2.6E+02 0.0055 23.0 5.8 53 289-344 46-105 (110)
232 cd07235 MRD Mitomycin C resist 22.6 1E+02 0.0022 24.5 3.3 15 312-326 12-26 (122)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=1.4e-67 Score=539.25 Aligned_cols=341 Identities=77% Similarity=1.160 Sum_probs=308.1
Q ss_pred eeccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCcccCCCCcccccCCHHHHHHHHHHhhhhh
Q 017739 10 ISVNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQS 80 (366)
Q Consensus 10 ~~~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~~~~~~g~l~~~l~~~~a~~~l~~~~~~~ 80 (366)
|...++.|.||| ||+||||+|+||+++|++|+|||||||||.++++.+|+++++|+++|+++||.+..+|+
T Consensus 162 i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~~ 241 (515)
T PLN02825 162 IKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQS 241 (515)
T ss_pred HHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhcc
Confidence 445678999998 99999999999999999999999999999888899999999999999999998888899
Q ss_pred HHHHhHHHHhhccccccccCCCC--CCccccCCCCCccc--ccccccccCCCccCCCCCCcccccccccccchhhhhccc
Q 017739 81 EIAANYVKAVAEEDITCFGHSDS--IGSVYSSQNGKTFS--ERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 156 (366)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 156 (366)
+|||+++|||++.. +..|-+- .+..+.+.+|..+| ....+.|.++.++++++|+ ++.++|+.++.||+++...
T Consensus 242 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 318 (515)
T PLN02825 242 EIAANYVKAVGGED--YSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGL-SGEQGFAIGGEERLSRLNG 318 (515)
T ss_pred hhhhhhhhhccccc--cccccccccccccccccccccccccccccccccccccccCcccc-cccccccccchhhchhhhh
Confidence 99999999998885 3332221 12233334555544 3333456666666666664 6789999999999999999
Q ss_pred chHHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeeccccceEEeCCccCHHHHHHHHHHHHHcCcCccCC
Q 017739 157 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRT 236 (366)
Q Consensus 157 ~~~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~~~~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs 236 (366)
++++|.+|++||++||+||||+|++.+|+||+||||++|+||||++++|+.||+++.+|++.|.+|+++++..++...++
T Consensus 319 ~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~lv~rs 398 (515)
T PLN02825 319 YLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGILVRRT 398 (515)
T ss_pred HHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHH
Q 017739 237 DEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTAD 316 (366)
Q Consensus 237 ~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~ 316 (366)
++.+..++.+|+|++.||+||||+.++++.+...++|.+++|+|+|||+|+|++||++++++|+++|+++++++|+++.+
T Consensus 399 ~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt~a~~ 478 (515)
T PLN02825 399 DEELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTTRTAD 478 (515)
T ss_pred HHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCcHHH
Confidence 99999999999999999999999999988877889999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCeEeceeccchHHHhhhcCCCCceeEEEecC
Q 017739 317 WFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLL 353 (366)
Q Consensus 317 fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~s~vl~k~l~ 353 (366)
||+++||++++++.||..|++.||++||||||+|+|+
T Consensus 479 fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l~ 515 (515)
T PLN02825 479 WFVRRGFSECSIESLPEARRKRINLSRGSKYYMKKLL 515 (515)
T ss_pred HHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEEecC
Confidence 9999999999999999999999999999999999984
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=5.3e-46 Score=376.50 Aligned_cols=265 Identities=43% Similarity=0.726 Sum_probs=244.2
Q ss_pred ccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHHHHHHHHhhhhhH
Q 017739 12 VNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQSE 81 (366)
Q Consensus 12 ~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a~~~l~~~~~~~~ 81 (366)
.-++.|.+|+ |++||||+|++|.++|.+|+|+||||+||.+ +++.+|++++.|+++++++++.. .
T Consensus 155 ~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~-~---- 229 (429)
T TIGR01890 155 RQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAER-L---- 229 (429)
T ss_pred HHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHh-c----
Confidence 3467777866 8999999999999999999999999999988 67778999999999999999843 1
Q ss_pred HHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHH
Q 017739 82 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 161 (366)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (366)
.+ |+ +.++|
T Consensus 230 --------------------------------------------------~~-~~--------------------~~~kl 238 (429)
T TIGR01890 230 --------------------------------------------------GS-ET--------------------TRRLL 238 (429)
T ss_pred --------------------------------------------------cC-CC--------------------cHHHH
Confidence 11 21 47899
Q ss_pred HHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeeccccceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHH
Q 017739 162 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELL 241 (366)
Q Consensus 162 ~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~~~~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~ 241 (366)
.+|.+|++.||.++||++++.+++|+.||||.+|.||+|..++|..||+++.+|++.|.+++++....++..+++++.+.
T Consensus 239 ~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l~ 318 (429)
T TIGR01890 239 SAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSREYLE 318 (429)
T ss_pred HHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888887788889998
Q ss_pred hhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHC
Q 017739 242 KALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSR 321 (366)
Q Consensus 242 ~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~ 321 (366)
..+..+++++.+++++||+.+.++.+...++|.+++|+|+|||+|+|++||++++++|+++|++.+++.++++.+||+++
T Consensus 319 ~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~~a~~fY~k~ 398 (429)
T TIGR01890 319 REISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTTRTGHWFRER 398 (429)
T ss_pred hhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeecchHHHHHHC
Confidence 88888999999999999999998766678999999999999999999999999999999999999998888889999999
Q ss_pred CCeEeceeccchHHHhhhcCCCCceeEEEec
Q 017739 322 GFRECSIEMIPEERRKRINLSRNSKYYMKKL 352 (366)
Q Consensus 322 GF~~~~~~~Lp~~r~~~Y~~~r~s~vl~k~l 352 (366)
||+.++...+|+.++..|+++|+|++|+|+|
T Consensus 399 GF~~~g~~~l~~~~~~~~~~~r~~~~~~~~~ 429 (429)
T TIGR01890 399 GFQTASVDELPEARRKLYNYQRNSKILMKRL 429 (429)
T ss_pred CCEECChhhCCHHHHHHhcccccCceeeecC
Confidence 9999999999999999999999999999986
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=1.3e-43 Score=360.10 Aligned_cols=268 Identities=46% Similarity=0.747 Sum_probs=243.1
Q ss_pred cccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHHHHHHHHhhhhhHH
Q 017739 13 NVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQSEI 82 (366)
Q Consensus 13 ~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a~~~l~~~~~~~~~ 82 (366)
-++.|-+|+ |+++|+|+|++|.++|.+|+||||||+||.+ +++.+|++++.++..++++++....+ .
T Consensus 164 ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~~~~~-~-- 240 (441)
T PRK05279 164 QLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLEALED-G-- 240 (441)
T ss_pred HHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHhhhhc-C--
Confidence 456677755 7899999999999999999999999999998 77778999999999999999843110 0
Q ss_pred HHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHH
Q 017739 83 AANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELA 162 (366)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (366)
+ . .| | |.++|.
T Consensus 241 -----------~-----------------------------------~-~g-g---------------------M~~Kv~ 251 (441)
T PRK05279 241 -----------D-----------------------------------Y-NS-G---------------------TARFLR 251 (441)
T ss_pred -----------C-----------------------------------C-Cc-c---------------------HHHHHH
Confidence 0 0 11 2 899999
Q ss_pred HHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeeccccceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHh
Q 017739 163 AAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK 242 (366)
Q Consensus 163 ~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~~~~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~ 242 (366)
+|++++++||++|||++++.++.|+.|||+.+|.||+|..+.|..||+++.+|++.|.+++.+....++..+++.+.+..
T Consensus 252 ~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~ 331 (441)
T PRK05279 252 AAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVRRSREQLER 331 (441)
T ss_pred HHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999887777777888888888
Q ss_pred hcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCC
Q 017739 243 ALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRG 322 (366)
Q Consensus 243 ~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~G 322 (366)
.+..+++++.+++++||+.+.++.....++|.+++|+|+|||+|+|++||++++++|++.|++.+++.++++.+||+++|
T Consensus 332 ~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~~~a~~fY~k~G 411 (441)
T PRK05279 332 EIDKFTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLTTRTAHWFLERG 411 (441)
T ss_pred ccCcEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHCc
Confidence 88889999999999999998876656678999999999999999999999999999999999999988888999999999
Q ss_pred CeEeceeccchHHHhhhcCCCCceeEEEec
Q 017739 323 FRECSIEMIPEERRKRINLSRNSKYYMKKL 352 (366)
Q Consensus 323 F~~~~~~~Lp~~r~~~Y~~~r~s~vl~k~l 352 (366)
|+.++...+|..++..|+++|+|++|+|+|
T Consensus 412 F~~~g~~~~~~~~~~~y~~~r~~~~~~~~~ 441 (441)
T PRK05279 412 FVPVDVDDLPEAKRQLYNYQRRSKVLVKDL 441 (441)
T ss_pred CEECChhhCcHHHHHhhCcccCceeeeecC
Confidence 999999999999999999999999999986
No 4
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.95 E-value=2.7e-28 Score=211.25 Aligned_cols=146 Identities=38% Similarity=0.735 Sum_probs=140.6
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCc
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQG 286 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqG 286 (366)
+||.|+.+|++.|.+|+.++...+.+.+++++.++..+..|++++++|++|||++++++.+.+.++|.+++|+|+|||+|
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G 81 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSG 81 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCC
Confidence 69999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccchHHHhhhcCC-CCceeEEEec
Q 017739 287 QGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLS-RNSKYYMKKL 352 (366)
Q Consensus 287 iG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~~-r~s~vl~k~l 352 (366)
+|.+|+++++..|++.|++++|++||.+.+||+++||+.++.+.||+++++.|+++ +.+++.+..+
T Consensus 82 ~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~~F~~~GF~~vd~~~LP~~~~~~~~~~~~~~~~~~~~~ 148 (153)
T COG1246 82 RGERLLERLLADARELGIKELFVLTTRSPEFFAERGFTRVDKDELPEEVWSSYNFCERRSKCLAFDL 148 (153)
T ss_pred cHHHHHHHHHHHHHHcCCceeeeeecccHHHHHHcCCeECccccCCHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8887766544
No 5
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=99.89 E-value=7.3e-25 Score=218.42 Aligned_cols=276 Identities=41% Similarity=0.487 Sum_probs=229.4
Q ss_pred eeeccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeC-CcccCCCCcccccCCHHHHHHHHHHhhh
Q 017739 9 RISVNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIID-GPILDESGHLIRFLTLQEADSLIRQRVK 78 (366)
Q Consensus 9 ~~~~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~-~~~~~~~g~l~~~l~~~~a~~~l~~~~~ 78 (366)
+|...+|+|.+|+ ||++|||+|+||+++|.+|+|+|+|||+| +++++++|+.++.|++++++.+++++++
T Consensus 228 ~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~~S~l~l~~e~~~l~k~~q 307 (520)
T KOG2436|consen 228 RIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKENGEDISSLILQEEDAGLRKPSQ 307 (520)
T ss_pred hhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccCcccccccccchhHhhhhhhhh
Confidence 5677889999997 99999999999999999999999999999 6789999999999999999999999999
Q ss_pred hhHHHHhHHHHhhcccccccc-CCCCCCccccCCCCC--ccccc-ccccccCCCccCCCCCCcccccccccccchhhhhc
Q 017739 79 QSEIAANYVKAVAEEDITCFG-HSDSIGSVYSSQNGK--TFSER-RIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 154 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (366)
|.++|+.+++++......-+. +...+....+.++.. .++.. +..++.++.+++.++++|+..++++.++.+++.|.
T Consensus 308 q~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~~~~gv~~~k~~sl~~~~~~~al~~~~~~~rl 387 (520)
T KOG2436|consen 308 QKNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTLISGGVGINKGNSLISQSFKRALDLEEYIDRL 387 (520)
T ss_pred hcccccccchhhhhheeeccCcCCCCCcceeecccccceeeccCCCCccccCceeeecCcccccchhhhhcchHHHHHHh
Confidence 999999999999877643232 111344444444322 24444 55566788899999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeeccccceEEeCCccCHHHHHHHHHHHHHcCcC-c
Q 017739 155 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGAL-V 233 (366)
Q Consensus 155 ~~~~~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~~~~~~IR~at~~Di~~I~~Li~~~~~~~~~-~ 233 (366)
++++.++.+|..-|..++.++|..|++..+.++++.|-+++.+|+. .+-+..++.+-.+|+++|+-..++......+ .
T Consensus 388 n~~lse~i~a~~~~~~~i~~~~~~D~~~e~V~~ldkf~~~~~~~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~~~~~w~f 466 (520)
T KOG2436|consen 388 NGSLSELIAAGDYCGGAIKTYELSDGTNEGVLYLDKFAVSGMGTGS-SDVSDGIFNVMVEDFPEILWRSRPLNEVNKWYF 466 (520)
T ss_pred hchHHHHHHHHHHhccceEEEEccCCCcccceeeeecccCCccccc-chhhHHHHHHHHHhhhhheeecccccccceEEE
Confidence 9999999999999999999999999999999999999999999998 4555667788888999888887777665544 4
Q ss_pred cCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHH
Q 017739 234 RRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKL 291 (366)
Q Consensus 234 ~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~L 291 (366)
.++.+.+. ..+.+++++.+++++.|+.+.++. ++..+.|.++.|+++.+..+
T Consensus 467 ~rs~g~L~-~~~~~lfwyg~~~i~~~a~~~~~~-----~v~~~~~~~d~~~s~~n~k~ 518 (520)
T KOG2436|consen 467 RRSEGSLR-ALDFKLFWYGEGQIIKCAALFQFF-----EVAAMSVASDIRPSWQNDKL 518 (520)
T ss_pred eccHHHHh-ccCcEEEEecCcHHHHHHHhhhhh-----HHHHhhhccccCccccCCCC
Confidence 55666555 567778888999999999998654 67778899999988876554
No 6
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.86 E-value=5e-21 Score=191.80 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=162.7
Q ss_pred eeccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCH-HHHHHHHHHhhh
Q 017739 10 ISVNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTL-QEADSLIRQRVK 78 (366)
Q Consensus 10 ~~~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~-~~a~~~l~~~~~ 78 (366)
|...++.|.||| |++||||+|+||+++|.+|+|+||||+||.+ ++|.+|++++.+++ ++.+.++...
T Consensus 122 I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~~~l~~~~-- 199 (398)
T PRK04531 122 VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEYDHLMQQP-- 199 (398)
T ss_pred HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHHHHHHhcC--
Confidence 345677888887 8999999999999999999999999999987 67778999999998 4667766321
Q ss_pred hhHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccch
Q 017739 79 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (366)
|+ .+ | |.
T Consensus 200 ------------------~v---------------------------------tg-G---------------------M~ 206 (398)
T PRK04531 200 ------------------WI---------------------------------NG-G---------------------MK 206 (398)
T ss_pred ------------------CC---------------------------------Cc-c---------------------HH
Confidence 11 22 2 88
Q ss_pred HHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeeccccc-eEEeCCccCHHHHHHHHHHHHHcCcCccCCH
Q 017739 159 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE-GTRTAKVTDLSGIKQIIQPLVESGALVRRTD 237 (366)
Q Consensus 159 ~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~~~~~-~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~ 237 (366)
++|.+|..++ .+++++|+++.+.+++|+.||||++|.||+|.....+ ..+....=|.+.+.+++....... ..
T Consensus 207 ~KL~~a~~al-~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~i~~~~~~~~~d~~~l~~ll~~sf~r~-----~~ 280 (398)
T PRK04531 207 LKLEQIKELL-DRLPLESSVSITSPSDLAKELFTHKGSGTLVRRGERILRATDWDELDLERLNLLIESSFGRT-----LK 280 (398)
T ss_pred HHHHHHHHHH-hCCCcEEEEEecCCCHHHHHHccCCCCCeEEecCCceeeeCChhhcCHHHHHHHHhhhcccc-----hH
Confidence 9999999999 5688999999999999999999999999999987653 233334448888888874332221 12
Q ss_pred HHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHH
Q 017739 238 EELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRT 314 (366)
Q Consensus 238 e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t---t~A 314 (366)
+++.+....+. +..++..=|++.+.. +...++|..++|.++-||.|++..++..+.+.. ..+++.+ ...
T Consensus 281 ~~y~~~~~~~~-~y~~~~y~~~Aiv~~--~~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~-----~~L~Wrsr~~n~~ 352 (398)
T PRK04531 281 PDYFDTTQLLR-AYVSENYRAAAILTE--TGGGPYLDKFAVLDDARGEGLGRAVWNVMREET-----PQLFWRSRHNNTI 352 (398)
T ss_pred HHHhccCCceE-EEEeCCCcEEEEEec--CCCceEeEEEEEccchhhcChHHHHHHHHHhhC-----CceEEEcCCCCCc
Confidence 33333323333 334455555555542 357899999999999999999999999887765 3466655 233
Q ss_pred HHHH
Q 017739 315 ADWF 318 (366)
Q Consensus 315 ~~fY 318 (366)
..||
T Consensus 353 ~~Wy 356 (398)
T PRK04531 353 NKFY 356 (398)
T ss_pred ccee
Confidence 4555
No 7
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.86 E-value=7.3e-22 Score=186.34 Aligned_cols=116 Identities=39% Similarity=0.587 Sum_probs=104.8
Q ss_pred eccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCc--ccccCCHHHHHHHHHHhhh
Q 017739 11 SVNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGH--LIRFLTLQEADSLIRQRVK 78 (366)
Q Consensus 11 ~~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~--l~~~l~~~~a~~~l~~~~~ 78 (366)
...++++.||+ ||.||+|+|++|+++|.+|+|+|||+|||.+ +++..+. +++.++.+++++|+.+..
T Consensus 137 ~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~- 215 (265)
T COG0548 137 ERLLDNGAIPVIAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI- 215 (265)
T ss_pred HHHHhCCCceEEecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC-
Confidence 34678899998 9999999999999999999999999999999 7887777 999999999999996532
Q ss_pred hhHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccch
Q 017739 79 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (366)
. .+ | |.
T Consensus 216 -------------------i---------------------------------~~-G---------------------Mi 221 (265)
T COG0548 216 -------------------I---------------------------------TG-G---------------------MI 221 (265)
T ss_pred -------------------c---------------------------------cC-c---------------------cH
Confidence 1 11 3 89
Q ss_pred HHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceee
Q 017739 159 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 159 ~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~ 201 (366)
++|++|++||+.||++|||+|++.+++++.||||+.|.||++.
T Consensus 222 ~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~ 264 (265)
T COG0548 222 PKVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIV 264 (265)
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEec
Confidence 9999999999999999999999999999999999999999985
No 8
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.75 E-value=3.6e-18 Score=164.23 Aligned_cols=115 Identities=47% Similarity=0.689 Sum_probs=100.2
Q ss_pred ccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHHHHHHHHhhhhhH
Q 017739 12 VNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQSE 81 (366)
Q Consensus 12 ~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a~~~l~~~~~~~~ 81 (366)
.-++.|-+|+ |++||+|+|++|.++|.+|+||||+|+||.+ +++.+|++++.++++++++++.+...
T Consensus 156 ~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~~~--- 232 (280)
T cd04237 156 RQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETGAL--- 232 (280)
T ss_pred HHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcCCC---
Confidence 3456666655 8999999999999999999999999999998 67768999999999999999944220
Q ss_pred HHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHH
Q 017739 82 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 161 (366)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (366)
+ .+ | |.+||
T Consensus 233 ----------------~---------------------------------~g-g---------------------M~~Kv 241 (280)
T cd04237 233 ----------------L---------------------------------TN-D---------------------TARLL 241 (280)
T ss_pred ----------------C---------------------------------CC-C---------------------HHHHH
Confidence 0 11 2 89999
Q ss_pred HHHHHHHhcCCCeEEecccccCchhhhhhhcccCcccee
Q 017739 162 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 162 ~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
++|.++++.||+++||++++.+++++.|+||++|.||+|
T Consensus 242 ~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 242 QAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 999999999999999999999999999999999999985
No 9
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.73 E-value=3.8e-18 Score=162.82 Aligned_cols=114 Identities=19% Similarity=0.195 Sum_probs=98.0
Q ss_pred eccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCH-HHHHHHHHHhhhh
Q 017739 11 SVNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTL-QEADSLIRQRVKQ 79 (366)
Q Consensus 11 ~~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~-~~a~~~l~~~~~~ 79 (366)
...++.|.||+ |++||+|+|+||.++|.+|+|+||||+||.+ ++|.+|++++.|++ .|+++|+.+..
T Consensus 147 ~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~g~lI~~l~~~~e~~~li~~g~-- 224 (271)
T cd04236 147 QWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVHLPADLPSLSDAEW-- 224 (271)
T ss_pred HHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCCCCCccccCcHHHHHHHHhCCE--
Confidence 34578899998 8999999999999999999999999999988 67778999999996 99999995532
Q ss_pred hHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchH
Q 017739 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
+ .+ ||.. -.+
T Consensus 225 ------------------i---------------------------------~g-Gm~~------------------ki~ 234 (271)
T cd04236 225 ------------------L---------------------------------SE-TEQN------------------RIQ 234 (271)
T ss_pred ------------------E---------------------------------cC-Ceee------------------chH
Confidence 2 22 4211 178
Q ss_pred HHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCcccee
Q 017739 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 160 ~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
++.+|+.++..||. |||++ ++.++.||||+.|.||++
T Consensus 235 ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 235 DIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred HHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 99999999999999 99998 788999999999999974
No 10
>PRK07757 acetyltransferase; Provisional
Probab=99.70 E-value=8.5e-16 Score=133.03 Aligned_cols=134 Identities=31% Similarity=0.574 Sum_probs=114.7
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCC
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGq 285 (366)
+.||+++.+|++.+.+++..........+.+.+.+...+..++++..++++||++.+.... .+.+++..++|+|+|||+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~~~-~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHILW-EDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEecc-CCceEEEEEEECHHHcCC
Confidence 4699999999999999998776666656677788888888888999999999999998543 356789999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccchHHHhhhcC
Q 017739 286 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINL 341 (366)
Q Consensus 286 GiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~ 341 (366)
|+|++|++.+++.+++.|+..+.+.+ .+.+||+|+||+..+...+|+..+..-+.
T Consensus 81 Glg~~Ll~~l~~~a~~~g~~~i~~~~-~~~~~Y~k~GF~~~~~~~~~~~~~~~~~~ 135 (152)
T PRK07757 81 GIGRMLVEACLEEARELGVKRVFALT-YQPEFFEKLGFREVDKEALPQKVWADCIK 135 (152)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEEe-CcHHHHHHCCCEEcccccCChhHHhcCcc
Confidence 99999999999999999999987665 45789999999999999999876665443
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.67 E-value=5.5e-16 Score=132.35 Aligned_cols=124 Identities=21% Similarity=0.294 Sum_probs=97.5
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecC----CCeEEEEEE
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAAI 276 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i----~~~~V~e~dg~IVG~a~l~~~~d----~~~~eL~~l 276 (366)
...||+++.+|++.+.+++.......+......+.+.+.+ ..++|++.++++||++.+..... ...++|..+
T Consensus 3 ~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l 82 (144)
T PRK10146 3 ACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQEL 82 (144)
T ss_pred ccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheehee
Confidence 3579999999999999998866543332222233343333 35678889999999999875321 124678899
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 017739 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 277 aV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~ 328 (366)
+|+|+|||+|+|+.||+++++.|++.|++.+.+.+ +.|.+||+++||+..+.
T Consensus 83 ~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 83 VVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 99999999999999999999999999999999987 48999999999998653
No 12
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.66 E-value=3.3e-16 Score=151.00 Aligned_cols=114 Identities=28% Similarity=0.465 Sum_probs=97.8
Q ss_pred cccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC---CCCcccccCCHHHHHHHHHHhhhh
Q 017739 13 NVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILD---ESGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 13 ~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~---~~g~l~~~l~~~~a~~~l~~~~~~ 79 (366)
-++.|.+|+ |++||||+|++|+++|.+|+||||||+||.+ +.+ ..+++++.++.+|+++++....
T Consensus 157 ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~~l~~~g~-- 234 (284)
T CHL00202 157 LLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEARNLASTGI-- 234 (284)
T ss_pred HHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHHHHHhcCC--
Confidence 456667776 8899999999999999999999999999988 543 3478999999999999873210
Q ss_pred hHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchH
Q 017739 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
. .| | |.+
T Consensus 235 ------------------~---------------------------------tG-G---------------------M~~ 241 (284)
T CHL00202 235 ------------------I---------------------------------SG-G---------------------MIP 241 (284)
T ss_pred ------------------C---------------------------------CC-C---------------------HHH
Confidence 0 12 2 899
Q ss_pred HHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceee
Q 017739 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 160 ~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~ 201 (366)
+|.+|..|++.||.++||++++.+++++.|+|+.+|.||++.
T Consensus 242 Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 242 KVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 999999999999999999999999999999999999999974
No 13
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.64 E-value=5.7e-16 Score=146.56 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=89.6
Q ss_pred eccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHH-HHHHHHHHhhhh
Q 017739 11 SVNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQ-EADSLIRQRVKQ 79 (366)
Q Consensus 11 ~~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~-~a~~~l~~~~~~ 79 (366)
...++.|.||+ |++||||+|++|.++|.+|+|+||||+||.+ +++.+|++++.+++. ++++++...
T Consensus 124 ~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~--- 200 (248)
T cd04252 124 EAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQP--- 200 (248)
T ss_pred HHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcC---
Confidence 34567788888 8999999999999999999999999999987 777789999999984 777887321
Q ss_pred hHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchH
Q 017739 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
|+ .+ | |.+
T Consensus 201 -----------------~v---------------------------------tg-G---------------------M~~ 208 (248)
T cd04252 201 -----------------WV---------------------------------KY-G---------------------TKL 208 (248)
T ss_pred -----------------Cc---------------------------------CC-c---------------------hHH
Confidence 01 22 3 788
Q ss_pred HHHHHHHHHhc--CCCeEEecccccCchhhhhhhcccCcccee
Q 017739 160 ELAAAAFVCRR--GVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 160 ~l~~a~~a~~~--GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
+|.+|..+.+. ++..+|+.+ +++|+.|||+++|.||+|
T Consensus 209 Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 209 KIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred HHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCCccC
Confidence 99966655554 455666665 789999999999999985
No 14
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.62 E-value=9.4e-15 Score=130.30 Aligned_cols=124 Identities=28% Similarity=0.567 Sum_probs=101.9
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEE-ECCeEEEEEEEeeecCCCeEEEEEEEECcccc
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECR 283 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e-~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yR 283 (366)
.+.||+++++|.+.|.+++................+..+...+++++ .++++||++.+.... .+.++|..++|+|+||
T Consensus 5 ~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~~-~~~~~i~~l~V~p~~r 83 (169)
T PRK07922 5 AITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVMW-EDLAEIRTVAVDPAAR 83 (169)
T ss_pred CceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeecC-CCceEEEEEEECHHHh
Confidence 35899999999999999998766544433444444445566788888 899999999887543 3568899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceec
Q 017739 284 GQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 284 GqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~~~ 330 (366)
|+|+|++||++++++|++.|++++++.+. +.+||+|+||+..+...
T Consensus 84 gkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-~~~fY~k~GF~~~~~~~ 129 (169)
T PRK07922 84 GRGVGHAIVERLLDVARELGLSRVFVLTF-EVEFFARHGFVEIDGTP 129 (169)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEec-cHHHHHHCCCEECcccc
Confidence 99999999999999999999999988764 57899999999987544
No 15
>PTZ00330 acetyltransferase; Provisional
Probab=99.61 E-value=1.8e-14 Score=123.36 Aligned_cols=123 Identities=24% Similarity=0.354 Sum_probs=93.1
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc------CcEEEEEECCeEEEEEEEeeec-----CCCeEEEE
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------DSFYVVEREGQIIACAALFPFF-----KEKCGEVA 274 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i------~~~~V~e~dg~IVG~a~l~~~~-----d~~~~eL~ 274 (366)
..||+++++|++.+.+++...........-..+.+.... ..+++.+.+|++||++.+...+ ....++|.
T Consensus 7 ~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~ 86 (147)
T PTZ00330 7 LELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIE 86 (147)
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEE
Confidence 579999999999999998765332221111122222211 1345556789999999986432 11357899
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 017739 275 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 275 ~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~~ 328 (366)
.++|+|+|||+|+|++|++++++++++.|+..+.+.+ ..+.+||+++||+.++.
T Consensus 87 ~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 87 DVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACER 141 (147)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEece
Confidence 9999999999999999999999999999999888777 48899999999998874
No 16
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.59 E-value=5e-15 Score=142.58 Aligned_cols=116 Identities=38% Similarity=0.573 Sum_probs=101.1
Q ss_pred ccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHHHHHHHHhhhhhH
Q 017739 12 VNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQSE 81 (366)
Q Consensus 12 ~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a~~~l~~~~~~~~ 81 (366)
..++.|.+|+ |+++|+++|++|+.+|.+|+||||+|+||.+ +.+.+|+++++++.+|+++++....
T Consensus 157 ~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~---- 232 (283)
T PRK00942 157 ALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELIEDGV---- 232 (283)
T ss_pred HHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHHHcCC----
Confidence 3467777777 7899999999999999999999999999988 6777899999999999999873210
Q ss_pred HHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHH
Q 017739 82 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 161 (366)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (366)
+ .| | |.++|
T Consensus 233 ----------------~---------------------------------tg-g---------------------m~~Kl 241 (283)
T PRK00942 233 ----------------I---------------------------------TG-G---------------------MIPKV 241 (283)
T ss_pred ----------------C---------------------------------CC-c---------------------hHHHH
Confidence 0 11 2 88999
Q ss_pred HHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeec
Q 017739 162 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 162 ~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
++|..+++.|+.+|||++++.++.++.++|+.++.||+|.+
T Consensus 242 ~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 242 EAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 99999999999999999999999999999999999999865
No 17
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.58 E-value=3.2e-14 Score=150.58 Aligned_cols=134 Identities=29% Similarity=0.554 Sum_probs=114.2
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCC
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGq 285 (366)
..||+++.+|++.|.+++..+.......+++.+.+......++|++.+|++|||+.+.... ....+|..++|+|+|||+
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~~~g~IVG~~~l~~~~-~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAEHHGEVTGCASLYIYD-SGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEEECCEEEEEEEEEEcC-CCeEEEEEEEECHHHcCC
Confidence 4799999999999999998766555555677777777778889999999999999987543 356899999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccchHHHhhhcC
Q 017739 286 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINL 341 (366)
Q Consensus 286 GiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~ 341 (366)
|+|+.||+++++++++.|++.+++.+ .+..||+|+||+.++...+|......-..
T Consensus 543 GIGk~Ll~~l~~~ak~~g~~~i~l~~-~a~~FYek~GF~~~~~~~~~~~~~~~~~~ 597 (614)
T PRK12308 543 GQGSALVQYLVEKARQMAIKKVFVLT-RVPEFFMKQGFSPTSKSLLPEKVLKDCDQ 597 (614)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEee-CcHHHHHHCCCEECCcccCChHHHHhhcc
Confidence 99999999999999999999998876 46799999999999999988765544443
No 18
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.55 E-value=1e-13 Score=132.22 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=98.9
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccC-CHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECcc
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 281 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~r-s~e~l~~~i---~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~ 281 (366)
..||+++++|++.+.+|+...... +..+. ..+.+...+ ..+++++.+|++||++.+........++|..++|+|+
T Consensus 116 ~~IR~a~~~D~~~l~~L~~~v~~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~ 194 (266)
T TIGR03827 116 FTLRIATEDDADAMAALYRKVFPT-YPFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPE 194 (266)
T ss_pred eEEEECCHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHH
Confidence 479999999999999999875432 22222 233333332 3567888999999999875444456789999999999
Q ss_pred ccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 282 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 282 yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
|||+|+|+.||+++++++++.|++.+++.+ ..+..+|+|+||+.++.-
T Consensus 195 yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l 246 (266)
T TIGR03827 195 YRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTL 246 (266)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEE
Confidence 999999999999999999999999998877 367889999999999864
No 19
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.55 E-value=3.4e-14 Score=118.98 Aligned_cols=119 Identities=21% Similarity=0.361 Sum_probs=89.1
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhh--cCcEEEEEECCeEEEEEEEeeec----C--CCeEEEEEEEE
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA--LDSFYVVEREGQIIACAALFPFF----K--EKCGEVAAIGV 278 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~--i~~~~V~e~dg~IVG~a~l~~~~----d--~~~~eL~~laV 278 (366)
.||+++++|.+++.+|++..........+........ -..+++++++++|||++.+.+.. . -..+.+.+++|
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 4899999999999999887654443322111111111 25788899999999999998751 1 14688999999
Q ss_pred CccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEe
Q 017739 279 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFREC 326 (366)
Q Consensus 279 ~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~ 326 (366)
+|+|||+|+|++||+.+++.+++.|+..+++.. ....||+++||+.+
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFP-SSPPFYRRFGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE--SSHHHHHHTTEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-CChhhhhcCCCEEC
Confidence 999999999999999999999999998887765 56899999999864
No 20
>PRK03624 putative acetyltransferase; Provisional
Probab=99.55 E-value=1.1e-13 Score=116.19 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=94.2
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCC--HHHHHhh----cCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEC
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRT--DEELLKA----LDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 279 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs--~e~l~~~----i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~ 279 (366)
..||+++.+|++.+.+++... +...++. ...+... ...++++..++++||++.+... .....+..++|+
T Consensus 3 ~~ir~~~~~d~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~--~~~~~i~~i~v~ 77 (140)
T PRK03624 3 MEIRVFRQADFEAVIALWERC---DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYD--GHRGWAYYLAVH 77 (140)
T ss_pred eEEEEcccccHHHHHHHHHhc---CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeecc--CCCceEEEEEEC
Confidence 579999999999999998765 2222221 1122222 2356788889999999987632 244677889999
Q ss_pred ccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceecc
Q 017739 280 PECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMI 331 (366)
Q Consensus 280 P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~~L 331 (366)
|+|||+|+|+.||+.+++.+++.|++.+.+.+ ..+.+||+|+||+..+...+
T Consensus 78 p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~~~ 133 (140)
T PRK03624 78 PDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRISL 133 (140)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEEeh
Confidence 99999999999999999999999999998876 47899999999998765443
No 21
>PLN02512 acetylglutamate kinase
Probab=99.54 E-value=2.1e-14 Score=140.00 Aligned_cols=115 Identities=29% Similarity=0.455 Sum_probs=98.9
Q ss_pred ccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-cc---CCCCcccccCCHHHHHHHHHHhhh
Q 017739 12 VNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-IL---DESGHLIRFLTLQEADSLIRQRVK 78 (366)
Q Consensus 12 ~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~---~~~g~l~~~l~~~~a~~~l~~~~~ 78 (366)
..++.+.||+ |+++|||+|++|.++|.+|+||||+|+||.+ +. ++++++++.++.+|+++++....
T Consensus 181 ~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~~l~~~~~- 259 (309)
T PLN02512 181 PLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADGK- 259 (309)
T ss_pred HHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHHHHHhCCC-
Confidence 3456777777 8999999999999999999999999999998 55 45689999999999999873210
Q ss_pred hhHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccch
Q 017739 79 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (366)
+ .| | |.
T Consensus 260 -------------------v---------------------------------tG-G---------------------M~ 265 (309)
T PLN02512 260 -------------------I---------------------------------AG-G---------------------MI 265 (309)
T ss_pred -------------------C---------------------------------CC-c---------------------HH
Confidence 0 11 2 89
Q ss_pred HHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceee
Q 017739 159 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 159 ~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~ 201 (366)
++|++|..+++.|+++|||++++.++.++.++|+.++.||+|.
T Consensus 266 ~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~ 308 (309)
T PLN02512 266 PKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308 (309)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence 9999999999999999999999999999999999999999874
No 22
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.53 E-value=3e-14 Score=136.92 Aligned_cols=113 Identities=33% Similarity=0.539 Sum_probs=97.2
Q ss_pred cccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCC---CCcccccCCHHHHHHHHHHhhhh
Q 017739 13 NVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDE---SGHLIRFLTLQEADSLIRQRVKQ 79 (366)
Q Consensus 13 ~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~---~g~l~~~l~~~~a~~~l~~~~~~ 79 (366)
.++.|.||+ |+++|+++|++|+.+|.+|+||||+++||.+ +.+. +++++++++.+|+++++....
T Consensus 154 ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~~~-- 231 (279)
T cd04250 154 LLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIADGI-- 231 (279)
T ss_pred HHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHHcCC--
Confidence 356677776 7899999999999999999999999999998 5554 589999999999988873210
Q ss_pred hHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchH
Q 017739 80 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (366)
. .| | |.+
T Consensus 232 ------------------~---------------------------------tG-g---------------------m~~ 238 (279)
T cd04250 232 ------------------I---------------------------------SG-G---------------------MIP 238 (279)
T ss_pred ------------------C---------------------------------CC-c---------------------hHH
Confidence 0 11 2 889
Q ss_pred HHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCcccee
Q 017739 160 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 160 ~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
+|.+|..+++.|+.+|||++++.++.++.++|+.+|.||++
T Consensus 239 Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 239 KVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999985
No 23
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.51 E-value=5e-14 Score=133.69 Aligned_cols=114 Identities=38% Similarity=0.572 Sum_probs=98.2
Q ss_pred ccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHHHHHHHHhhhhhH
Q 017739 12 VNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQSE 81 (366)
Q Consensus 12 ~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a~~~l~~~~~~~~ 81 (366)
..++.|.||+ |+++|+++|++|+.+|.+|+|||||++||.+ +.+.++++++.++.+|+++++....
T Consensus 133 ~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~---- 208 (256)
T cd04238 133 TLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDGV---- 208 (256)
T ss_pred HHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcCC----
Confidence 3456777777 7899999999999999999999999999998 6666799999999999988873210
Q ss_pred HHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHH
Q 017739 82 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 161 (366)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (366)
+ .+ +|.++|
T Consensus 209 ----------------~---------------------------------~g----------------------gm~~Kl 217 (256)
T cd04238 209 ----------------I---------------------------------SG----------------------GMIPKV 217 (256)
T ss_pred ----------------C---------------------------------CC----------------------ChHHHH
Confidence 0 11 288999
Q ss_pred HHHHHHHhcCCCeEEecccccCchhhhhhhcccCcccee
Q 017739 162 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 162 ~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
.+|..+++.|+.+++|++++.++.|+.+||+.++.||+|
T Consensus 218 ~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 218 EAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999989999975
No 24
>PHA00673 acetyltransferase domain containing protein
Probab=99.50 E-value=4.4e-13 Score=117.67 Aligned_cols=120 Identities=23% Similarity=0.264 Sum_probs=92.9
Q ss_pred EeCCccCHHHHHHHHHHHHHcCc---C-ccCC----HHHHHhh-cCcEEEEEECCeEEEEEEEeeecC-----CCeEEEE
Q 017739 209 RTAKVTDLSGIKQIIQPLVESGA---L-VRRT----DEELLKA-LDSFYVVEREGQIIACAALFPFFK-----EKCGEVA 274 (366)
Q Consensus 209 R~at~~Di~~I~~Li~~~~~~~~---~-~~rs----~e~l~~~-i~~~~V~e~dg~IVG~a~l~~~~d-----~~~~eL~ 274 (366)
--++.+|+++|.+|+........ . .+.+ .+.+... -..++|++.+|++|||+.+...+. ...+.|.
T Consensus 10 ~~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 10 AFAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred hhccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 35899999999999977211111 1 1111 1222222 247788889999999999876543 2556899
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH---HHHHHHHHCCCeEece
Q 017739 275 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT---RTADWFKSRGFRECSI 328 (366)
Q Consensus 275 ~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt---~A~~fY~k~GF~~~~~ 328 (366)
.++|+|++||+|+|++|+++++++|++.|+..+++..| ++.+||.++|++++..
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETNR 146 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhch
Confidence 99999999999999999999999999999999999985 7899999999998653
No 25
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.50 E-value=6.1e-13 Score=109.32 Aligned_cols=103 Identities=31% Similarity=0.495 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHcCcCc---------cCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECcc
Q 017739 215 DLSGIKQIIQPLVESGALV---------RRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 281 (366)
Q Consensus 215 Di~~I~~Li~~~~~~~~~~---------~rs~e~l~~~i----~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~ 281 (366)
|+++|.+|+.......... ..+.+.+...+ ..++|++.++++||++.+. ...+|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-----~~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-----PDGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-----TCEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-----CCCeEEEEEEChh
Confidence 7889999998865543221 13455555554 2689999999999999986 2345999999999
Q ss_pred ccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCC
Q 017739 282 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGF 323 (366)
Q Consensus 282 yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF 323 (366)
|||+|+|++|++.++++++. |++.+.+.. ..+.+||+++||
T Consensus 76 ~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 99999999999999999977 999888887 588999999998
No 26
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.49 E-value=3.7e-13 Score=116.22 Aligned_cols=121 Identities=26% Similarity=0.397 Sum_probs=91.3
Q ss_pred cceEEeCCccCHH-HHHHHHHHHHHcCcCccCCHHHHHhhc--------C-cEEEEEE--CCeEEEEEEEeeec-----C
Q 017739 205 YEGTRTAKVTDLS-GIKQIIQPLVESGALVRRTDEELLKAL--------D-SFYVVER--EGQIIACAALFPFF-----K 267 (366)
Q Consensus 205 ~~~IR~at~~Di~-~I~~Li~~~~~~~~~~~rs~e~l~~~i--------~-~~~V~e~--dg~IVG~a~l~~~~-----d 267 (366)
...||+++.+|.+ .+..++..... ..+++.+.+.+.+ . .+++++. ++++||++.+.... .
T Consensus 6 ~~~ir~~~~~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~ 82 (150)
T PLN02706 6 KFKVRRLEISDKSKGFLELLQQLTV---VGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNC 82 (150)
T ss_pred ceEEeEhhhcccchHHHHHHHhccC---CCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCC
Confidence 3579999999998 58888765422 2245545444432 1 2445555 68999999885221 1
Q ss_pred CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 017739 268 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 268 ~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~~ 328 (366)
...++|..++|+|+|||+|+|+.|++.++++|++.|++++.+.+ .....||+|+||+..+.
T Consensus 83 ~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g~ 144 (150)
T PLN02706 83 GKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKEI 144 (150)
T ss_pred CcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEehh
Confidence 24567888999999999999999999999999999999999988 34457999999998764
No 27
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.49 E-value=7.5e-13 Score=113.90 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=93.7
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc-Cc--EEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccc
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DS--FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC 282 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i-~~--~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~y 282 (366)
++||+++.+|++.+..+.... ...++..+.+.... .. .+++..++++||++.+.... +..++..++|+|+|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~ 75 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRA----HAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDY 75 (146)
T ss_pred cchhcCChhhhHHHHHHHHhc----CCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHH
Confidence 479999999999999986432 23456555554432 22 23456889999999987544 34667789999999
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 283 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 283 RGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
||+|+|+.+++.+++.+++.|++.+.+.+ +.+.+||+|+||+..+..
T Consensus 76 rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~ 126 (146)
T PRK09491 76 QRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIR 126 (146)
T ss_pred ccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeee
Confidence 99999999999999999999999998876 489999999999987754
No 28
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.48 E-value=5e-13 Score=103.30 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=69.6
Q ss_pred EEECCeEEEEEEEeeecCC----CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHC
Q 017739 250 VEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 321 (366)
Q Consensus 250 ~e~dg~IVG~a~l~~~~d~----~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~ 321 (366)
++.+|++||++.+.+.... ...+|..++|+|+|||+|+|+.|++++++.+++.|++.+++.+ +.+.+||+++
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4789999999999987664 7999999999999999999999999999999999999999988 4789999999
Q ss_pred CCe
Q 017739 322 GFR 324 (366)
Q Consensus 322 GF~ 324 (366)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 29
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.47 E-value=7.4e-13 Score=119.90 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=94.3
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHc-CcCccCC-HH---H-HH----hhc----Cc--EEEEEECCeEEEEEEEeeecCCC
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVES-GALVRRT-DE---E-LL----KAL----DS--FYVVEREGQIIACAALFPFFKEK 269 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~-~~~~~rs-~e---~-l~----~~i----~~--~~V~e~dg~IVG~a~l~~~~d~~ 269 (366)
..||+++.+|.+.+.+++...... .+..++. ++ . +. ... .. +++.+.++++||++.+.... ..
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~-~~ 122 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN-DT 122 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC-CC
Confidence 479999999999999999876432 2222221 11 1 11 111 12 23446688999999998654 34
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 270 ~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
.++++.++|+|+|||+|+|++|++.++++|++.|+.+|.+.+ ..+.+||+|+||+..+..
T Consensus 123 ~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 123 DARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 678999999999999999999999999999999999999987 479999999999987754
No 30
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.45 E-value=2.2e-12 Score=111.87 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=93.1
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcC---cCccCCHHHHHhhc-----CcEEEEEECCeEEEEEEEeeecC---CCeEEEE
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFK---EKCGEVA 274 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~---~~~~rs~e~l~~~i-----~~~~V~e~dg~IVG~a~l~~~~d---~~~~eL~ 274 (366)
..||+++.+|++.+.++........ .....+.+.+...+ ..+++++.++++||++.+..... ....++
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~- 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF- 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE-
Confidence 5799999999999999986532111 11123444454433 24577788999999999975322 234555
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 275 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 275 ~laV~P~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
.++|+|+|||+|+|+.|++.+++++++ .|++.+.+.+ +.+.+||+++||+..+..
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~ 142 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTG 142 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeec
Confidence 499999999999999999999999988 6888887766 588999999999998763
No 31
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.45 E-value=2.8e-13 Score=128.37 Aligned_cols=111 Identities=24% Similarity=0.272 Sum_probs=94.8
Q ss_pred cccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHHHHHHHHhhhhhHH
Q 017739 13 NVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQSEI 82 (366)
Q Consensus 13 ~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a~~~l~~~~~~~~~ 82 (366)
.++.|.||+ |+++|||+|++|+++|.+|+|| +|++||.+ +.+.+++++++++..|+++++....
T Consensus 132 ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g~----- 205 (252)
T cd04249 132 LLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQGV----- 205 (252)
T ss_pred HHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcCC-----
Confidence 457777777 8999999999999999999999 78999987 7777899999999999999873210
Q ss_pred HHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHH
Q 017739 83 AANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELA 162 (366)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (366)
+ .+ | |.++|.
T Consensus 206 ---------------~---------------------------------~g-G---------------------m~~kl~ 215 (252)
T cd04249 206 ---------------I---------------------------------TD-G---------------------MIVKVN 215 (252)
T ss_pred ---------------C---------------------------------cC-C---------------------cHHHHH
Confidence 0 22 2 889999
Q ss_pred HHHHHHhcCCCeEEecccccCchhhhhhhcccCcccee
Q 017739 163 AAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 163 ~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
+|..+++.|+.++|+++++.++. +.++|+.++.||+|
T Consensus 216 ~a~~~~~~~~~~v~I~~g~~~~~-l~~~l~g~~~GT~I 252 (252)
T cd04249 216 AALDAAQSLRRGIDIASWQYPEQ-LTALLAGEPVGTKI 252 (252)
T ss_pred HHHHHHHhCCCeEEEEeCCCccH-HHHHHcCCCCCcCC
Confidence 99999999999999999998885 67899999999975
No 32
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.45 E-value=2.8e-12 Score=110.76 Aligned_cols=124 Identities=22% Similarity=0.299 Sum_probs=101.6
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHcC---cCccCCHHHHHhh--c----CcEEEEEE---CCeEEEEEEEeeecC----C
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKA--L----DSFYVVER---EGQIIACAALFPFFK----E 268 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~~---~~~~rs~e~l~~~--i----~~~~V~e~---dg~IVG~a~l~~~~d----~ 268 (366)
...||.++++|.+.|..|++++.... ..+..+.+.+... + .+++++.. ++.++|++.+++..+ .
T Consensus 3 ~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k 82 (163)
T KOG3216|consen 3 NIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGK 82 (163)
T ss_pred ceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccccc
Confidence 45799999999999999999875543 3344566666664 2 35556554 789999999886433 3
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~ 328 (366)
...+|..++|.|+|||+|+|+.|++.+-+.|.+.|+.++...+ .+|+.||++.|++..+.
T Consensus 83 ~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 83 QGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred ceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 6789999999999999999999999999999999999999888 59999999999997554
No 33
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.44 E-value=1.3e-12 Score=114.92 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=89.5
Q ss_pred EEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc-CcEEEEE-ECCeEEEEEEEeeec-CCCeEEEEEEEECccccC
Q 017739 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DSFYVVE-REGQIIACAALFPFF-KEKCGEVAAIGVSPECRG 284 (366)
Q Consensus 208 IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i-~~~~V~e-~dg~IVG~a~l~~~~-d~~~~eL~~laV~P~yRG 284 (366)
||+++.+|+++|.+|+................+.+.. ..+++++ .++++||++.+.... .....++..++|+|+|||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 6899999999999999764221111111111222222 3466666 467999998765433 335678889999999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEec
Q 017739 285 QGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 327 (366)
Q Consensus 285 qGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~ 327 (366)
+|+|++|+++++++++..++..+.+.+ +.+.+||+|+||+...
T Consensus 81 ~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~ 127 (157)
T TIGR02406 81 KGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGV 127 (157)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCC
Confidence 999999999999999999999998877 4889999999998744
No 34
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.44 E-value=2.4e-12 Score=116.67 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=94.4
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHc-CcCccC-CHH----HHHhh----c-----CcEEEEE-ECCeEEEEEEEeeecCC
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVES-GALVRR-TDE----ELLKA----L-----DSFYVVE-REGQIIACAALFPFFKE 268 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~-~~~~~r-s~e----~l~~~----i-----~~~~V~e-~dg~IVG~a~l~~~~d~ 268 (366)
...||+++++|++.+.+++...... .+..++ +.+ .+..+ + ..++++. .++++||++.+.... .
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~-~ 124 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELN-D 124 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecC-C
Confidence 4579999999999999999875332 222222 111 11111 1 1344444 568999999998543 3
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
...+|..++|+|+|||+|+|++|++.+++++++.|++++.+.+ +.+.+||+|+||+..+..
T Consensus 125 ~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~ 189 (194)
T PRK10975 125 TDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTA 189 (194)
T ss_pred CceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEE
Confidence 4688999999999999999999999999999999999998876 478999999999998764
No 35
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.44 E-value=1.4e-12 Score=113.04 Aligned_cols=127 Identities=25% Similarity=0.293 Sum_probs=96.7
Q ss_pred EEeCC-ccCHHHHHHHHHHHHHcCcC-ccCC---HHHHHhhc-----CcEEEEEECCeEEEEEEEeee-----cCCCeEE
Q 017739 208 TRTAK-VTDLSGIKQIIQPLVESGAL-VRRT---DEELLKAL-----DSFYVVEREGQIIACAALFPF-----FKEKCGE 272 (366)
Q Consensus 208 IR~at-~~Di~~I~~Li~~~~~~~~~-~~rs---~e~l~~~i-----~~~~V~e~dg~IVG~a~l~~~-----~d~~~~e 272 (366)
+|+++ .+|++.|.++++......+. ..++ .+.+...+ ...+|++.||+++|++.++.. .++....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 69999 99999999999876444332 2233 22333333 257899999999999988741 1346777
Q ss_pred EEEEEECccccCCcHHHHHHHHHHHHHHHC-CCCEEEEEc----HHHHHHHHHCCCeEeceeccchH
Q 017739 273 VAAIGVSPECRGQGQGDKLLDYIEKKAASL-GLDMLFLLT----TRTADWFKSRGFRECSIEMIPEE 334 (366)
Q Consensus 273 L~~laV~P~yRGqGiG~~LL~~l~~~Ar~~-Gi~~l~l~t----t~A~~fY~k~GF~~~~~~~Lp~~ 334 (366)
+..++|+|+|||+|+|+.+++.+++.+.+. +++++.+.+ +.+.++|+|.||+.++..++|..
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~~~~~ 147 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFEFPDK 147 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEEESSE
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEECCCC
Confidence 888999999999999999999999999876 899999988 58999999999999999888754
No 36
>PRK09831 putative acyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=112.73 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=86.8
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHH-----------Hhhc--CcEEEEEECCeEEEEEEEeeecCCCeEEE
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEL-----------LKAL--DSFYVVEREGQIIACAALFPFFKEKCGEV 273 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l-----------~~~i--~~~~V~e~dg~IVG~a~l~~~~d~~~~eL 273 (366)
.||+++.+|.+.+.+++............+.+.+ ...+ ..++|+..+|++||++.+.. .++
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~------~~i 75 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE------HYI 75 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh------cee
Confidence 5899999999999999987644332222222222 2222 36788889999999998852 467
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceec
Q 017739 274 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 274 ~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~~~ 330 (366)
..++|+|+|||+|+|++||+++++.+++. .+.. +..+.+||+++||+.++...
T Consensus 76 ~~~~v~p~~~g~GiG~~Ll~~~~~~~~~l---~v~~-~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 76 DMLFVDPEYTRRGVASALLKPLIKSESEL---TVDA-SITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eeEEECHHHcCCCHHHHHHHHHHHHhhhe---Eeec-chhhHHHHHHCCCEEeeccc
Confidence 88999999999999999999999998762 2322 25789999999999998754
No 37
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.43 E-value=3.9e-13 Score=127.83 Aligned_cols=108 Identities=29% Similarity=0.356 Sum_probs=90.7
Q ss_pred ccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHHHHHHHHhhhhhH
Q 017739 12 VNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEADSLIRQRVKQSE 81 (366)
Q Consensus 12 ~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a~~~l~~~~~~~~ 81 (366)
..++.+.+|+ |+++|||+|++|+++|.+|+||||+|+||.+ +.+ +|++++.++.+|+++++.. .
T Consensus 140 ~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~-~~~~i~~i~~~e~~~l~~~-~---- 213 (257)
T cd04251 140 ALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYL-DGRVIERITVSDAESLLEK-A---- 213 (257)
T ss_pred HHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhee-CCcccCccCHHHHHHHHhh-C----
Confidence 3567777777 8999999999999999999999999999998 454 6999999999999998721 1
Q ss_pred HHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHH
Q 017739 82 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 161 (366)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (366)
.+ | |.++|
T Consensus 214 --------------------------------------------------~g-g---------------------m~~Kl 221 (257)
T cd04251 214 --------------------------------------------------GG-G---------------------MKRKL 221 (257)
T ss_pred --------------------------------------------------CC-c---------------------hHHHH
Confidence 12 2 88999
Q ss_pred HHHHHHHhcCCCeEEecccccCchhhhhhhcccCcccee
Q 017739 162 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 162 ~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
++|..+++.|+.++||++++.++.+..-| .|.||.|
T Consensus 222 ~aa~~a~~~gv~~v~i~~g~~~~~l~~~l---~g~gT~i 257 (257)
T cd04251 222 LAAAEAVEGGVREVVIGDARADSPISSAL---NGGGTVI 257 (257)
T ss_pred HHHHHHHHcCCCEEEEecCCCccHHHHHH---cCCCcCC
Confidence 99999999999999999999998876544 3667754
No 38
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.41 E-value=8.4e-13 Score=126.28 Aligned_cols=111 Identities=28% Similarity=0.364 Sum_probs=93.6
Q ss_pred ccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC---CCCcccccCCHHHHHHHHHHhhh
Q 017739 12 VNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILD---ESGHLIRFLTLQEADSLIRQRVK 78 (366)
Q Consensus 12 ~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~---~~g~l~~~l~~~~a~~~l~~~~~ 78 (366)
..++.+.+|+ |+.+|+|+|.+|..+|.+|+||||||+||.+ +.+ .++++++.++.+|+++++.. .
T Consensus 144 ~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~-~- 221 (268)
T PRK14058 144 LLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKA-A- 221 (268)
T ss_pred HHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhhc-c-
Confidence 3456677776 7899999999999999999999999999988 443 35889999999998887621 0
Q ss_pred hhHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccch
Q 017739 79 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 158 (366)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (366)
.| | |.
T Consensus 222 -----------------------------------------------------tG-g---------------------M~ 226 (268)
T PRK14058 222 -----------------------------------------------------GG-G---------------------MK 226 (268)
T ss_pred -----------------------------------------------------CC-c---------------------cH
Confidence 12 2 89
Q ss_pred HHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeec
Q 017739 159 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 159 ~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
++|++|..+++.|+.++||++++.++.++.+| +|.||.|..
T Consensus 227 ~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 227 KKVLMAAEAVEGGVGRVIIADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCcchHHHHh---CCCceEEec
Confidence 99999999999999999999999999999888 678998854
No 39
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.41 E-value=1.1e-11 Score=107.07 Aligned_cols=121 Identities=26% Similarity=0.418 Sum_probs=91.3
Q ss_pred EEeCCccCHHHHHHHHHHHHHcCcCcc----CCHHHHHhhc--------CcEEEEEE-CCeEEEEEEEeeec-CCCeEEE
Q 017739 208 TRTAKVTDLSGIKQIIQPLVESGALVR----RTDEELLKAL--------DSFYVVER-EGQIIACAALFPFF-KEKCGEV 273 (366)
Q Consensus 208 IR~at~~Di~~I~~Li~~~~~~~~~~~----rs~e~l~~~i--------~~~~V~e~-dg~IVG~a~l~~~~-d~~~~eL 273 (366)
||+++++|++.|..+++.......... .+.+.+...+ ..++++.. +|++||++.+.... ....+++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 799999999999999987543333321 2222222221 34555555 99999999998643 3466777
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHH-HHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 274 AAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 274 ~~laV~P~yRGqGiG~~LL~~l~~~A-r~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
+ +.|.|+||++|+|+.|+..+++.| ++.|++++++.+ +++.+||+++||+..+..
T Consensus 81 ~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~ 140 (155)
T PF13420_consen 81 S-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGEL 140 (155)
T ss_dssp E-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEE
T ss_pred e-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEE
Confidence 5 888899999999999999999999 999999999877 589999999999999864
No 40
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.40 E-value=4.8e-12 Score=98.06 Aligned_cols=76 Identities=36% Similarity=0.701 Sum_probs=65.1
Q ss_pred CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCC
Q 017739 245 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGF 323 (366)
Q Consensus 245 ~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF 323 (366)
+.++++++++++|||+.+.+.. +..+|..++|+|+|||+|+|+.||+++.+.++. +.+++.+ ..+.+||+++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~--~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNE--DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEKLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETT--TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHHTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcC--CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHHCcC
Confidence 3578899999999999997544 589999999999999999999999999998843 4666666 688999999999
Q ss_pred eE
Q 017739 324 RE 325 (366)
Q Consensus 324 ~~ 325 (366)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 41
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.40 E-value=3.5e-12 Score=106.03 Aligned_cols=109 Identities=24% Similarity=0.394 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHH
Q 017739 215 DLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 290 (366)
Q Consensus 215 Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i----~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~ 290 (366)
|++.+.++.... +..+++.+.+...+ ..+++...++++||++.+.... ...++..++|+|+|||+|+|++
T Consensus 1 d~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~i~~~~v~~~~rg~G~g~~ 74 (131)
T TIGR01575 1 DLKAVLEIEAAA----FAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVL--DEAHILNIAVKPEYQGQGIGRA 74 (131)
T ss_pred CHHHHHHHHHhh----CCCCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEecC--CCeEEEEEEECHHHcCCCHHHH
Confidence 567777775543 33466666666654 2456677789999999987433 4568889999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 291 LLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 291 LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
|++++++++++.+++.+.+.+ ..+..||+++||+..+..
T Consensus 75 ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 117 (131)
T TIGR01575 75 LLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIR 117 (131)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccc
Confidence 999999999999999998875 468899999999988753
No 42
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=9.6e-12 Score=110.76 Aligned_cols=124 Identities=28% Similarity=0.333 Sum_probs=102.2
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcC----ccCCHHHHHhhc----C---cEEEEEEC-CeEEEEEEEeeecCC----C
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGAL----VRRTDEELLKAL----D---SFYVVERE-GQIIACAALFPFFKE----K 269 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~----~~rs~e~l~~~i----~---~~~V~e~d-g~IVG~a~l~~~~d~----~ 269 (366)
..||+++.+|++.|.++++.....+.. .+.+.+.+..+. . .++|++.+ |+++|++.+.++... .
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 369999999999999999998776542 456777766553 1 56677666 999999999987543 3
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 017739 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 270 ~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~~ 330 (366)
..+. .++|+|++||+|+|++||+.+++.++++|++.+.... ..+.++++++||+.++...
T Consensus 82 tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~ 145 (169)
T COG1247 82 TVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFP 145 (169)
T ss_pred EEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEecccc
Confidence 4455 7999999999999999999999999999998887766 4889999999999999764
No 43
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.37 E-value=1.8e-12 Score=126.50 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=86.6
Q ss_pred ccccCCCc---------cc-----ccccc----CCHHHHHHHHHHHcCCceEEEEeCCc-cc----CCCCcccccCCHHH
Q 017739 12 VNVDFESL---------IL-----CAFAN----FSTYEVATACALAIEADKLICIIDGP-IL----DESGHLIRFLTLQE 68 (366)
Q Consensus 12 ~~~~~~~~---------~~-----ge~~N----~~~~~vA~~~A~~l~AdKli~l~~~~-~~----~~~g~l~~~l~~~~ 68 (366)
..++.+.| |+ |+.+| +|.|.+|.++|.+|+|||||||||.+ ++ ++++++++.|+.+|
T Consensus 181 ~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~~~~~li~~lt~~e 260 (316)
T PRK12352 181 ALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALDRVDIAT 260 (316)
T ss_pred HHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCCCCCcccccccCHHH
Confidence 34566777 66 46666 99999999999999999999999988 54 34678999999999
Q ss_pred HHHHHHHhhhhhHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccc
Q 017739 69 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 148 (366)
Q Consensus 69 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (366)
+++++.+.. + .+.|
T Consensus 261 ~~~li~~g~----i-------------------------------------------------~~Gg------------- 274 (316)
T PRK12352 261 MTRYMQEGH----F-------------------------------------------------PPGS------------- 274 (316)
T ss_pred HHHHHhcCC----c-------------------------------------------------CCCC-------------
Confidence 999984321 0 1112
Q ss_pred hhhhhcccchHHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeec
Q 017739 149 ERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 149 ~~~~~~~~~~~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
|.++|.+|+.||+.||.++||++ +.. +.++++.. .||.|.+
T Consensus 275 --------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 275 --------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHIIK 315 (316)
T ss_pred --------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEEe
Confidence 89999999999999999999997 333 44666555 7788753
No 44
>PRK10514 putative acetyltransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=106.04 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=83.0
Q ss_pred ceEEeCCccCHHHHHHHHHHHHH--cCcCccCCHHHHHhhc------CcEEEE-EECCeEEEEEEEeeecCCCeEEEEEE
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRRTDEELLKAL------DSFYVV-EREGQIIACAALFPFFKEKCGEVAAI 276 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~--~~~~~~rs~e~l~~~i------~~~~V~-e~dg~IVG~a~l~~~~d~~~~eL~~l 276 (366)
..||+++++|.+.+.+++..... ..+..+.+.+.+...+ ..++++ ..++++||++.+.+ .++..+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~------~~~~~~ 75 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG------GHMEAL 75 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec------CcEeEE
Confidence 46999999999999999987432 2222333444443322 123444 46899999998852 346689
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEE--cHHHHHHHHHCCCeEeceec
Q 017739 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL--TTRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 277 aV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~--tt~A~~fY~k~GF~~~~~~~ 330 (366)
+|+|+|||+|+|++|++++++.+++. .+.+. .+++.+||+|+||+..+...
T Consensus 76 ~v~p~~rgkGig~~Ll~~~~~~~~~i---~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 76 FVDPDVRGCGVGRMLVEHALSLHPEL---TTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred EECHHhccCCHHHHHHHHHHHhcccc---EEEeecCCHHHHHHHHHCCCEEecccc
Confidence 99999999999999999999876432 12222 25899999999999988754
No 45
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.34 E-value=4.2e-11 Score=106.84 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=112.0
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhh----cCcEEEEEECCeEEEEEEEeeecCC----CeEEEEEE
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA----LDSFYVVEREGQIIACAALFPFFKE----KCGEVAAI 276 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~----i~~~~V~e~dg~IVG~a~l~~~~d~----~~~eL~~l 276 (366)
++.||..++.|++.|.++.+.....+. ....-+.+... ....+|+.+||++||++.+.+..-. ...-|+.+
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~~~~-e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPL 81 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFGPGR-EAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPL 81 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhhcch-HHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeE
Confidence 457999999999999999887766221 11112222222 1356888999999999999985432 45568999
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceeccchHHHhhhcCCCCceeEEEecCCCC
Q 017739 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDT 356 (366)
Q Consensus 277 aV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~s~vl~k~l~~~~ 356 (366)
+|+|+|||||||++|++..++.++..|...+.++- ...+|.++||+......++..- +..+..++.+.|..+.
T Consensus 82 aV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlG--dp~YY~rfGF~~~~~~~l~~p~-----~~~~~~fl~~~L~~~~ 154 (171)
T COG3153 82 AVDPEYQGQGIGSALVREGLEALRLAGASAVVVLG--DPTYYSRFGFEPAAGAKLYAPG-----PVPDERFLALELGDGA 154 (171)
T ss_pred EEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEec--CcccccccCcEEccccccccCC-----CCCCceEEEEEccCCc
Confidence 99999999999999999999999999999998876 4569999999999988776431 1235557778887654
Q ss_pred CCCCc
Q 017739 357 SGIIV 361 (366)
Q Consensus 357 ~~~~~ 361 (366)
...+.
T Consensus 155 l~~~~ 159 (171)
T COG3153 155 LEGPS 159 (171)
T ss_pred ccCCc
Confidence 43333
No 46
>PRK10314 putative acyltransferase; Provisional
Probab=99.33 E-value=1.1e-11 Score=108.92 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=86.4
Q ss_pred EEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHh-h---cCcEEEEEECCeEEEEEEEeeecCC-CeEEEEEEEECccc
Q 017739 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK-A---LDSFYVVEREGQIIACAALFPFFKE-KCGEVAAIGVSPEC 282 (366)
Q Consensus 208 IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~-~---i~~~~V~e~dg~IVG~a~l~~~~d~-~~~eL~~laV~P~y 282 (366)
+..++.+++.++..+-....-.....+.. ++.. + ....+++..++++||++.+.+..+. ...+|+.++|+|+|
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~--e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~ 86 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQ--DIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEAL 86 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCcc--ccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHH
Confidence 34566667777777766653322222221 2211 1 1234456678999999999864332 35799999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHC-CCCEEEEEc-HHHHHHHHHCCCeEecee
Q 017739 283 RGQGQGDKLLDYIEKKAASL-GLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 283 RGqGiG~~LL~~l~~~Ar~~-Gi~~l~l~t-t~A~~fY~k~GF~~~~~~ 329 (366)
||+|+|++||+.+++.+++. +...+++.+ ..+..||+++||+..+..
T Consensus 87 rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~~g~~ 135 (153)
T PRK10314 87 RGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIPVTEV 135 (153)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEECCCc
Confidence 99999999999999999775 677888877 467899999999998754
No 47
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.32 E-value=6.2e-11 Score=103.47 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=76.9
Q ss_pred CcEEEEEECCe--EEEEEEEeeecCC--CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHH
Q 017739 245 DSFYVVEREGQ--IIACAALFPFFKE--KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTAD 316 (366)
Q Consensus 245 ~~~~V~e~dg~--IVG~a~l~~~~d~--~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~ 316 (366)
.+++++..|++ .||++........ ..++|.+++|+++|||+|||++|++.+++.++.+|+..+.+.| ..|.+
T Consensus 55 p~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~ 134 (165)
T KOG3139|consen 55 PCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALR 134 (165)
T ss_pred ceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHH
Confidence 34555555544 4888877643222 4799999999999999999999999999999999999999999 48999
Q ss_pred HHHHCCCeEeceeccchHHHhhhcCCCCceeEEE
Q 017739 317 WFKSRGFRECSIEMIPEERRKRINLSRNSKYYMK 350 (366)
Q Consensus 317 fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~s~vl~k 350 (366)
+|+++||+..+.. ..|.+++-..+.++
T Consensus 135 LY~sLGF~r~~r~-------~~YYlng~dA~rl~ 161 (165)
T KOG3139|consen 135 LYESLGFKRDKRL-------FRYYLNGMDALRLK 161 (165)
T ss_pred HHHhcCceEecce-------eEEEECCcceEEEE
Confidence 9999999986643 34455554555544
No 48
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.31 E-value=2e-11 Score=127.70 Aligned_cols=121 Identities=18% Similarity=0.249 Sum_probs=95.4
Q ss_pred ceEEeC-CccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEE--CCeEEEEEEEeee----cC-CCeEEE
Q 017739 206 EGTRTA-KVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER--EGQIIACAALFPF----FK-EKCGEV 273 (366)
Q Consensus 206 ~~IR~a-t~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i----~~~~V~e~--dg~IVG~a~l~~~----~d-~~~~eL 273 (366)
..||++ +.+|+++|.+|++.. ...+++.+.+...+ ..+++++. +|++|||+..... .+ ....+|
T Consensus 83 ~~IR~~~~~~D~~~I~~L~~~~----~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i 158 (547)
T TIGR03103 83 FTVRRLRGPADVDAINRLYAAR----GMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSL 158 (547)
T ss_pred cEEEeCCChhHHHHHHHHHHhc----CCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEE
Confidence 579997 789999999998763 23445555554333 35677765 6899999975422 11 234689
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 017739 274 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 274 ~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~~ 330 (366)
.+++|+|+|||+|+|++||+.+++++++.|+..+.+.+ +.+.+||+|+||+.+....
T Consensus 159 ~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 159 WCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEE
Confidence 99999999999999999999999999999999999877 4889999999999887554
No 49
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=107.00 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=95.6
Q ss_pred cccceEEeCCccCHH--HHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEE---CC----eEEEEEEEeeecCC-
Q 017739 203 DLYEGTRTAKVTDLS--GIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER---EG----QIIACAALFPFFKE- 268 (366)
Q Consensus 203 ~~~~~IR~at~~Di~--~I~~Li~~~~~~~~~~~rs~e~l~~~i----~~~~V~e~---dg----~IVG~a~l~~~~d~- 268 (366)
.....+|+++..|+. .+..+........ .+|+...+...+ ..+++... ++ +++|++........
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~ 86 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIR--LPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRP 86 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCC--CcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCc
Confidence 344579999999999 6666633222211 677777776655 35566665 33 59999999643332
Q ss_pred ---CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC-CEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 269 ---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL-DMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 269 ---~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi-~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
..++|..++|+|+|||+|+|++|++.+++.+++.+. ..+.+.+ +.|.+||+++||+..+..
T Consensus 87 ~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~ 155 (177)
T COG0456 87 SADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIR 155 (177)
T ss_pred cccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeee
Confidence 278999999999999999999999999999999987 7888887 489999999999998754
No 50
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.29 E-value=6.7e-11 Score=115.84 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=96.7
Q ss_pred ccceEEeCCccCHHHHHHHHHHHHHcCc-CccCCHHHHHhhcC--cEEEEEE-----CCeEEEEEEEeeecCCCeEEEEE
Q 017739 204 LYEGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKALD--SFYVVER-----EGQIIACAALFPFFKEKCGEVAA 275 (366)
Q Consensus 204 ~~~~IR~at~~Di~~I~~Li~~~~~~~~-~~~rs~e~l~~~i~--~~~V~e~-----dg~IVG~a~l~~~~d~~~~eL~~ 275 (366)
+..+||+++++|++.+.+|++...+... ..+++.+++.+.+. ..+++.. ++.+||++.+.. ..+..+|..
T Consensus 185 m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~~~~~~~~~d~~gd~givG~~~~~~--~~~~~~I~~ 262 (320)
T TIGR01686 185 LSLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKEEIVTVSMSDRFGDSGIIGIFVFEK--KEGNLFIDD 262 (320)
T ss_pred CEEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCCCEEEEEEEecCCCCceEEEEEEEe--cCCcEEEEE
Confidence 3457999999999999999977643332 24567777777653 3443332 567999998764 346789999
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHHCCCeEe
Q 017739 276 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFREC 326 (366)
Q Consensus 276 laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t------t~A~~fY~k~GF~~~ 326 (366)
++|+|++||+|+|+.||+++++.|++.|++.+++.+ .++.+||+++||+..
T Consensus 263 l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 263 LCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 999999999999999999999999999999888754 479999999999864
No 51
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.28 E-value=7.5e-12 Score=118.42 Aligned_cols=118 Identities=16% Similarity=0.221 Sum_probs=92.2
Q ss_pred eccccCCCccc----------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCC---CCcccccCCHHHHHHHHHHh
Q 017739 11 SVNVDFESLIL----------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDE---SGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 11 ~~~~~~~~~~~----------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~---~g~l~~~l~~~~a~~~l~~~ 76 (366)
...++.+.+|+ |+++|+|+|++|..+|.+|+|||||++||.+ +.+. ++++++.++.+++++++...
T Consensus 121 ~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~ 200 (252)
T cd04241 121 KELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAAL 200 (252)
T ss_pred HHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhc
Confidence 34566777775 6789999999999999999999999999988 5665 68999999999999887421
Q ss_pred hhhhHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhccc
Q 017739 77 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 156 (366)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 156 (366)
.. . . ....| +
T Consensus 201 ~~---------------~---------~------------------------~~~tG----------------------G 210 (252)
T cd04241 201 GS---------------A---------G------------------------TDVTG----------------------G 210 (252)
T ss_pred Cc---------------C---------C------------------------ccccC----------------------C
Confidence 00 0 0 00011 3
Q ss_pred chHHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCcccee
Q 017739 157 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 157 ~~~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
|.++|.+|..+++.|++ +||++++.++.+ .+++.....||.|
T Consensus 211 m~~Kl~aa~~a~~~Gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i 252 (252)
T cd04241 211 MAGKIEELLELARRGIE-VYIFNGDKPENL-YRALLGNFIGTRI 252 (252)
T ss_pred HHHHHHHHHHHHhcCCe-EEEEeCCCHHHH-HHHHcCCCCceEC
Confidence 89999999999999997 999999988665 5667777788874
No 52
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.27 E-value=2.5e-10 Score=101.59 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=95.5
Q ss_pred cccceEEeCCccCHHHHHHHHHHHHH---c--CcC-ccCCHHHHHhhcC-----------cEEEEEECCeEEEEEEEeee
Q 017739 203 DLYEGTRTAKVTDLSGIKQIIQPLVE---S--GAL-VRRTDEELLKALD-----------SFYVVEREGQIIACAALFPF 265 (366)
Q Consensus 203 ~~~~~IR~at~~Di~~I~~Li~~~~~---~--~~~-~~rs~e~l~~~i~-----------~~~V~e~dg~IVG~a~l~~~ 265 (366)
.+...+|+++.+|.+.+.+++..... . .+. .+.+.++..+.+. .++++..++++||++.+...
T Consensus 8 t~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~ 87 (179)
T PRK10151 8 SESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRI 87 (179)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEee
Confidence 34568999999999999999843221 1 111 1234444433321 25777789999999998764
Q ss_pred c-CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 266 F-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 266 ~-d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
. ....++++ +.++|+|||+|+|+.+++.+++++.+ .|++++.+.+ .++.++|+|+||+.++..
T Consensus 88 ~~~~~~~~ig-~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~ 156 (179)
T PRK10151 88 EPLNKTAYIG-YWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCL 156 (179)
T ss_pred ccCCCceEEE-EEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEe
Confidence 3 33568885 78999999999999999999999975 5799998876 589999999999998865
No 53
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.24 E-value=1.9e-10 Score=103.04 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=92.8
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHcCcCccCC---HHH----HHhh----cCcEEEEEECCeEEEEEEEeeecC-CCeEE
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRT---DEE----LLKA----LDSFYVVEREGQIIACAALFPFFK-EKCGE 272 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs---~e~----l~~~----i~~~~V~e~dg~IVG~a~l~~~~d-~~~~e 272 (366)
...+|+++.+|++.+.++........+....+ ..+ +... -...+++..+|++||++.+..... ...++
T Consensus 6 ~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~ 85 (186)
T PRK15130 6 SVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAE 85 (186)
T ss_pred eeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEE
Confidence 45799999999999999976543222221111 111 1111 124677788999999999876432 34567
Q ss_pred EEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 273 VAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 273 L~~laV~P~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
+ .++|+|+|||+|+|+.+++.+++++.+ .|+++|.+.+ .++.++|+|+||+..+..
T Consensus 86 ~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~ 146 (186)
T PRK15130 86 F-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGEL 146 (186)
T ss_pred E-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEE
Confidence 7 599999999999999999999999965 6999998876 489999999999998763
No 54
>PRK01346 hypothetical protein; Provisional
Probab=99.24 E-value=8.7e-11 Score=118.40 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=92.9
Q ss_pred ccceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc--CcEEEEEECCeEEEEEEEeeec-----C--CCeEEEE
Q 017739 204 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--DSFYVVEREGQIIACAALFPFF-----K--EKCGEVA 274 (366)
Q Consensus 204 ~~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i--~~~~V~e~dg~IVG~a~l~~~~-----d--~~~~eL~ 274 (366)
+.+.||+++.+|++++.+|+........ .....+.+.... ...++++.++++||++.+.++. . ....+|.
T Consensus 5 ~~~~iR~~~~~D~~~i~~L~~~~f~~~~-~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~ 83 (411)
T PRK01346 5 MAITIRTATEEDWPAWFRAAATGFGDSP-SDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVT 83 (411)
T ss_pred CCceeecCCHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEEE
Confidence 3457999999999999999875433211 111122222222 3567888899999999987642 1 1468899
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEece
Q 017739 275 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 328 (366)
Q Consensus 275 ~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~ 328 (366)
.++|+|+|||+|+|++||+++++.+++.|+..+.+.+. ..+||+++||..+..
T Consensus 84 ~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~-~~~~Y~r~Gf~~~~~ 136 (411)
T PRK01346 84 AVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTAS-EGGIYGRFGYGPATY 136 (411)
T ss_pred EEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECC-chhhHhhCCCeeccc
Confidence 99999999999999999999999999999977776653 358999999998863
No 55
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.24 E-value=2.1e-11 Score=114.02 Aligned_cols=64 Identities=30% Similarity=0.369 Sum_probs=55.5
Q ss_pred eccccCCCccc---------cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCc-ccccCCHHHHHHHHH
Q 017739 11 SVNVDFESLIL---------CAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGH-LIRFLTLQEADSLIR 74 (366)
Q Consensus 11 ~~~~~~~~~~~---------ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~-l~~~l~~~~a~~~l~ 74 (366)
...++.+.||+ |+++|+|+|++|+++|.+|+||||+|+||.+ +.+.+++ +++.++.+|+++++.
T Consensus 129 ~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~ 203 (231)
T TIGR00761 129 EALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIE 203 (231)
T ss_pred HHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHH
Confidence 34467777777 7999999999999999999999999999987 6666665 999999999999873
No 56
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.23 E-value=1.3e-10 Score=100.43 Aligned_cols=121 Identities=18% Similarity=0.187 Sum_probs=92.6
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcC--cc-CCHHHHHhhc--------CcEEEEEECCeEEEEEEEeeecC-CCeEEEE
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGAL--VR-RTDEELLKAL--------DSFYVVEREGQIIACAALFPFFK-EKCGEVA 274 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~--~~-rs~e~l~~~i--------~~~~V~e~dg~IVG~a~l~~~~d-~~~~eL~ 274 (366)
.+|+++++|.+.+.++........+. .+ .+.+.....+ ..++++..+|++||++.+..... ....+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~g 81 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFWG 81 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEEE
Confidence 48999999999999998665433332 12 3433322221 25678888999999999986542 3456775
Q ss_pred EEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 275 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 275 ~laV~P~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
+++.|.+| +|+|+.++..+++++.+ .+++.+.+.+ ..+.+||+|+||+..+..
T Consensus 82 -~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~ 139 (156)
T TIGR03585 82 -IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVF 139 (156)
T ss_pred -EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeee
Confidence 55999999 99999999999999975 6999998877 589999999999998865
No 57
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.21 E-value=5.2e-10 Score=107.15 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=91.2
Q ss_pred ceEEeCCc-cCHHHHHHHHHHHHHcCc-CccCCHHHHHhhc-------CcEEEEEE--CCeEEEEEEEeeecC-CCeEEE
Q 017739 206 EGTRTAKV-TDLSGIKQIIQPLVESGA-LVRRTDEELLKAL-------DSFYVVER--EGQIIACAALFPFFK-EKCGEV 273 (366)
Q Consensus 206 ~~IR~at~-~Di~~I~~Li~~~~~~~~-~~~rs~e~l~~~i-------~~~~V~e~--dg~IVG~a~l~~~~d-~~~~eL 273 (366)
..+|+++. .|.+.+.++......... ...|+.+.+.... ..++++.. ++++||++.+....+ ...+++
T Consensus 150 ~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i 229 (292)
T TIGR03448 150 VTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALGEV 229 (292)
T ss_pred eEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCceeEE
Confidence 47888764 588888888665443322 1345555554321 23556666 689999976654332 245778
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEece
Q 017739 274 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 274 ~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~ 328 (366)
..++|+|+|||+|+|+.|++.+++++++.|+..+.+.+ +.+.+||+|+||+..+.
T Consensus 230 ~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 230 YVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 88999999999999999999999999999999988877 47899999999998654
No 58
>PRK10562 putative acetyltransferase; Provisional
Probab=99.20 E-value=2.3e-10 Score=98.51 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=79.8
Q ss_pred EEeCCccCHHHHHHHHHHHHHcCcC-cc---C--CHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEE
Q 017739 208 TRTAKVTDLSGIKQIIQPLVESGAL-VR---R--TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGV 278 (366)
Q Consensus 208 IR~at~~Di~~I~~Li~~~~~~~~~-~~---r--s~e~l~~~i---~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV 278 (366)
||+++.+|++.+.+++......... .. + ..+.+.+.. ..++++..++++||++.+.. ..++..++|
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~-----~~~i~~~~v 76 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLE-----GRFVGALFV 76 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEee-----ccEEEEEEE
Confidence 7999999999999998654211111 00 0 011111111 24567788899999999863 236788999
Q ss_pred CccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 017739 279 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 279 ~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~~ 330 (366)
+|+|||+|+|+.|++++++.+. .+.+.+ +.+.+||+|+||+.++...
T Consensus 77 ~~~~rg~G~g~~ll~~~~~~~~-----~~~~~v~~~N~~s~~~y~k~Gf~~~~~~~ 127 (145)
T PRK10562 77 APKAVRRGIGKALMQHVQQRYP-----HLSLEVYQKNQRAVNFYHAQGFRIVDSAW 127 (145)
T ss_pred CHHHcCCCHHHHHHHHHHhhCC-----eEEEEEEcCChHHHHHHHHCCCEEccccc
Confidence 9999999999999999988643 333333 5899999999999988643
No 59
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.19 E-value=9.4e-11 Score=113.70 Aligned_cols=76 Identities=26% Similarity=0.507 Sum_probs=68.5
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCe
Q 017739 246 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFR 324 (366)
Q Consensus 246 ~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k~GF~ 324 (366)
.+++.+.++++|||+.+.. .+|.+++|+|+|||+|+|++||+++++++++.|++.+++.++ .+..||+++||+
T Consensus 7 ~~~v~~~~~~iVG~~~l~~------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~ 80 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFK 80 (297)
T ss_pred EEEEEEECCEEEEEEEecc------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCE
Confidence 4667778899999998862 268999999999999999999999999999999999999984 678999999999
Q ss_pred Eec
Q 017739 325 ECS 327 (366)
Q Consensus 325 ~~~ 327 (366)
..+
T Consensus 81 ~~~ 83 (297)
T cd02169 81 ELA 83 (297)
T ss_pred Eec
Confidence 888
No 60
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.18 E-value=2.8e-10 Score=108.97 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=86.4
Q ss_pred EeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc-------CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECcc
Q 017739 209 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 281 (366)
Q Consensus 209 R~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i-------~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~ 281 (366)
.+++++|+++|.+|+..........+++.+.. ..+ ...+++..++++||++.+.+... ...++..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVL-RGLREPGAGHTRHLVAVDSDPIVGYANLVPARG-TDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHH-hhccccCCCCceEEEEEECCEEEEEEEEEcCCC-CcceEEEEEECHh
Confidence 36788999999999987655544445665543 332 14677788999999999886432 3467889999999
Q ss_pred ccCCcHHHHHHHHHHHHHHHCCCCEEEEEc--HHHHHHHHHCCCeEec
Q 017739 282 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFKSRGFRECS 327 (366)
Q Consensus 282 yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t--t~A~~fY~k~GF~~~~ 327 (366)
|||+|+|++||+++++.+.. ...+++.. ..+.+||+++||+...
T Consensus 82 ~rg~GiG~~Ll~~~~~~~~~--~~~~~~~~~n~~a~~fy~~~Gf~~~~ 127 (292)
T TIGR03448 82 HRRRGIGRALIRALLAKGGG--RLRVWAHGDLPAARALASRLGLVPTR 127 (292)
T ss_pred hcCCCHHHHHHHHHHHhccC--ceEEEEcCCCHHHHHHHHHCCCEEcc
Confidence 99999999999999998752 22333332 4789999999999876
No 61
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.15 E-value=1.2e-09 Score=98.59 Aligned_cols=124 Identities=12% Similarity=0.049 Sum_probs=89.9
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHc--CcCccC-----CHHH-------HHhhc----CcEEEEEE--CCeEEEEEEEee
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVES--GALVRR-----TDEE-------LLKAL----DSFYVVER--EGQIIACAALFP 264 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~--~~~~~r-----s~e~-------l~~~i----~~~~V~e~--dg~IVG~a~l~~ 264 (366)
.+.||+++.+|.+.+.+++...... .+.... ..+. +.... ...+++.. ++++||++.+..
T Consensus 17 rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~ 96 (194)
T PRK10809 17 RLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSN 96 (194)
T ss_pred cEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEe
Confidence 4579999999999999998753221 111100 0111 11111 12344432 679999999986
Q ss_pred ecC--CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 265 FFK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 265 ~~d--~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
... ...++++ ++|+|+|||+|+|+.+++.+++++.+ .|+++|.+.+ ++|.++|+|+||+..+..
T Consensus 97 ~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~ 167 (194)
T PRK10809 97 VVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYA 167 (194)
T ss_pred ecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeee
Confidence 542 2346774 88999999999999999999999977 5999999888 589999999999987754
No 62
>PHA01807 hypothetical protein
Probab=99.15 E-value=6.1e-10 Score=98.10 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=81.0
Q ss_pred eCCccCHHHHHHHHHHHHHcC-cCccCC--H---HHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEE---EEEE
Q 017739 210 TAKVTDLSGIKQIIQPLVESG-ALVRRT--D---EELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGE---VAAI 276 (366)
Q Consensus 210 ~at~~Di~~I~~Li~~~~~~~-~~~~rs--~---e~l~~~i----~~~~V~e~dg~IVG~a~l~~~~d~~~~e---L~~l 276 (366)
.++.+|+..+..|........ ...+|. . +.+...+ ...++++.|+++||++.+.+..+....+ +..+
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeE
Confidence 367789998888876653332 111121 2 2222221 2357778899999999997654443344 4457
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHH
Q 017739 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKS 320 (366)
Q Consensus 277 aV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k 320 (366)
+|+|+|||+|+|++||+.++++|++.|+..+.+.+ .++.+||++
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~ 135 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRR 135 (153)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHh
Confidence 99999999999999999999999999999998887 388999997
No 63
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.14 E-value=1e-10 Score=109.70 Aligned_cols=97 Identities=28% Similarity=0.362 Sum_probs=82.5
Q ss_pred cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCC------CCcccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhccc
Q 017739 22 CAFANFSTYEVATACALAIEADKLICIIDGP-ILDE------SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 94 (366)
Q Consensus 22 ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~------~g~l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (366)
++++|+++|.+|+.+|.+|+|||||++||.+ +.+. +++++++|+.+|+++++..
T Consensus 145 ~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~------------------- 205 (248)
T cd02115 145 GTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA------------------- 205 (248)
T ss_pred eeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHc-------------------
Confidence 4679999999999999999999999999988 5543 3899999999999988621
Q ss_pred cccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCe
Q 017739 95 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 174 (366)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~r 174 (366)
+ + +..++.++..+.+.| -+
T Consensus 206 --------------------------------------g-~---------------------~~~k~~a~~~~~~~~-~~ 224 (248)
T cd02115 206 --------------------------------------G-A---------------------MVLKPKAADPAARAG-IP 224 (248)
T ss_pred --------------------------------------C-C---------------------CccCHHHHHHHHHcC-Cc
Confidence 0 1 445578888899999 59
Q ss_pred EEecccccCchhhhhhhcccCcccee
Q 017739 175 VHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 175 vhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
++++++..++.+ ++|+.++.||+|
T Consensus 225 v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 225 VRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred EEEEeCCCcccc--cccCCCCCCCCC
Confidence 999999999888 999999999975
No 64
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.14 E-value=5.6e-10 Score=94.79 Aligned_cols=120 Identities=23% Similarity=0.355 Sum_probs=97.7
Q ss_pred ceEEeCCccCHHH-HHHHHHHHHHcCcCccCCHHHHHhhc-------C-cE-EEEEE--CCeEEEEEEEeee-----cCC
Q 017739 206 EGTRTAKVTDLSG-IKQIIQPLVESGALVRRTDEELLKAL-------D-SF-YVVER--EGQIIACAALFPF-----FKE 268 (366)
Q Consensus 206 ~~IR~at~~Di~~-I~~Li~~~~~~~~~~~rs~e~l~~~i-------~-~~-~V~e~--dg~IVG~a~l~~~-----~d~ 268 (366)
..+|++..+|+.. ..+++..+...+...+ +++...+ + ++ .|+++ .++|||.+.+... .-.
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~vt~---e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g 83 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVVTR---EQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCG 83 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhccccCH---HHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccc
Confidence 4799999999996 9999998888887644 4444432 3 23 34444 3789999998742 224
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~~ 328 (366)
..++|..+.|+++|||+++|+.|++.+...++..|+..+.+.+ +....||+|+||...+.
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~~ 144 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAGN 144 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHcCccccch
Confidence 6789999999999999999999999999999999999999999 68899999999997663
No 65
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.14 E-value=1.1e-09 Score=92.55 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=86.8
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCc---Ccc-CCHHHHHhhcC-----------cEEEEE-EC-CeEEEEEEEee-ecC
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGA---LVR-RTDEELLKALD-----------SFYVVE-RE-GQIIACAALFP-FFK 267 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~---~~~-rs~e~l~~~i~-----------~~~V~e-~d-g~IVG~a~l~~-~~d 267 (366)
++||+++++|++.+.++.+......+ ..+ .+.+...+.+. .++++. .+ +++||++.+.. ...
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~ 81 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN 81 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC
Confidence 47999999999999999853322222 111 25444333321 124444 33 47999999943 345
Q ss_pred CCeEEEEEEEECccccCCcHHHHHHHHHHHHH-HHCCCCEEEEEc----HHHHHHHHHCCCe
Q 017739 268 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFR 324 (366)
Q Consensus 268 ~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~A-r~~Gi~~l~l~t----t~A~~fY~k~GF~ 324 (366)
...++++ +.|.|+|||+|+|+.++..+++++ ++.|+.++.+.+ ..+.++++|+||+
T Consensus 82 ~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 82 NNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 6889996 899999999999999999999999 678999998888 4899999999996
No 66
>PRK13688 hypothetical protein; Provisional
Probab=99.11 E-value=4.1e-10 Score=99.49 Aligned_cols=107 Identities=19% Similarity=0.345 Sum_probs=77.2
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeec---------CCCeEEEEEE
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFF---------KEKCGEVAAI 276 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~---------d~~~~eL~~l 276 (366)
..+|++..+|++++.++....... ..-..++++..++++||++.+.... +.+..+|..+
T Consensus 18 ~~~~~~~~~dl~~l~~l~~~~f~~------------~~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l 85 (156)
T PRK13688 18 KKFREFGNQELSMLEELQANIIEN------------DSESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKL 85 (156)
T ss_pred HHHHHhcHHHHHHHHhhhhhEeec------------CCCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEE
Confidence 457888888888888885432211 0113567788899999998875321 2356789999
Q ss_pred EECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEecee
Q 017739 277 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 277 aV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~~~ 329 (366)
+|+|+|||+|+|++||+++. +.++. +.+.. ..+.+||+|+||+..+..
T Consensus 86 ~V~p~~rgkGiG~~Ll~~a~----~~~~~-~~~~~~~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 86 EVLPKYQNRGYGEMLVDFAK----SFQLP-IKTIARNKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred EECHHHcCCCHHHHHHHHHH----HhCCe-EEEEeccchHHHHHhCCCEEeEEe
Confidence 99999999999999998643 44544 33332 468899999999998866
No 67
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.07 E-value=1.8e-09 Score=106.41 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=72.1
Q ss_pred hhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHH
Q 017739 242 KALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKS 320 (366)
Q Consensus 242 ~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k 320 (366)
..++.+++++.++++|||+.+.. + .|.+++|+|+|||+|+|++||.++++.+++.|+..+++.|. ...+||++
T Consensus 28 ~~~d~~vv~~~~~~lVg~g~l~g----~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k 101 (332)
T TIGR00124 28 APLEIFIAVYEDEEIIGCGGIAG----N--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY 101 (332)
T ss_pred CCCCEEEEEEECCEEEEEEEEec----C--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH
Confidence 34567888889999999999852 2 48899999999999999999999999999999999999994 56789999
Q ss_pred CCCeEecee
Q 017739 321 RGFRECSIE 329 (366)
Q Consensus 321 ~GF~~~~~~ 329 (366)
+||.+....
T Consensus 102 lGF~~i~~~ 110 (332)
T TIGR00124 102 CGFKTLAEA 110 (332)
T ss_pred cCCEEeeee
Confidence 999998743
No 68
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.04 E-value=9.4e-10 Score=107.24 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=85.6
Q ss_pred eeccccCCC---------ccc----cccc----cCCHHHHHHHHHHHcCCceEEEEeCCc-cc----CCCCcccccCCHH
Q 017739 10 ISVNVDFES---------LIL----CAFA----NFSTYEVATACALAIEADKLICIIDGP-IL----DESGHLIRFLTLQ 67 (366)
Q Consensus 10 ~~~~~~~~~---------~~~----ge~~----N~~~~~vA~~~A~~l~AdKli~l~~~~-~~----~~~g~l~~~l~~~ 67 (366)
|...++.|. +|+ |+++ |+|.|++|+.+|.+|+|||||++||.+ +. +.++++++.++.+
T Consensus 175 I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~~~p~a~~i~~it~~ 254 (310)
T TIGR00746 175 IKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINYGKPDEKALREVTVE 254 (310)
T ss_pred HHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCCCCCCCcCCcCcCHH
Confidence 344667777 566 4444 899999999999999999999999987 44 3567899999999
Q ss_pred HHHHHHHHhhhhhHHHHhHHHHhhccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCccccccccccc
Q 017739 68 EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGG 147 (366)
Q Consensus 68 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (366)
|+++++.... +..| |
T Consensus 255 e~~~~~~~g~----------------------------------------------------~~tG-g------------ 269 (310)
T TIGR00746 255 ELEDYYKAGH----------------------------------------------------FAAG-S------------ 269 (310)
T ss_pred HHHHHHhcCC----------------------------------------------------cCCC-C------------
Confidence 9988873210 0011 2
Q ss_pred chhhhhcccchHHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceee
Q 017739 148 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 148 ~~~~~~~~~~~~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~ 201 (366)
|.++|.+|+.+|+.|+.++||.+ .. .+.+++... .||.|.
T Consensus 270 ---------M~~Kl~AA~~~~~~g~~~v~I~~---~~-~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 270 ---------MGPKVEAAIEFVESGGKRAIITS---LE-NAVEALEGK-AGTRVT 309 (310)
T ss_pred ---------cHHHHHHHHHHHHhCCCeEEEec---hH-HHHHHHCCC-CCcEEe
Confidence 88999999999999999999987 23 444555555 789874
No 69
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=98.92 E-value=2.7e-09 Score=99.68 Aligned_cols=65 Identities=28% Similarity=0.289 Sum_probs=56.7
Q ss_pred eeccccCCCccc----------ccc---ccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHH
Q 017739 10 ISVNVDFESLIL----------CAF---ANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEA 69 (366)
Q Consensus 10 ~~~~~~~~~~~~----------ge~---~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a 69 (366)
|...++.+.+|+ |++ +|+++|++|+.+|.+|+|+||+|+||.+ +.+ ++++++++|+.+|+
T Consensus 127 i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~ 206 (242)
T PF00696_consen 127 IRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEA 206 (242)
T ss_dssp HHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHH
T ss_pred HHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHH
Confidence 445566788887 677 9999999999999999999999999988 555 57899999999999
Q ss_pred HHHHH
Q 017739 70 DSLIR 74 (366)
Q Consensus 70 ~~~l~ 74 (366)
++|+.
T Consensus 207 ~~l~~ 211 (242)
T PF00696_consen 207 EELAS 211 (242)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99985
No 70
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=98.87 E-value=6.4e-09 Score=101.17 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=76.6
Q ss_pred cccccCC----HHHHHHHHHHHcCCceEEEEeCCc-cc----CCCCcccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhc
Q 017739 22 CAFANFS----TYEVATACALAIEADKLICIIDGP-IL----DESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAE 92 (366)
Q Consensus 22 ge~~N~~----~~~vA~~~A~~l~AdKli~l~~~~-~~----~~~g~l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 92 (366)
|+++|++ .|.+|+.+|.+|+|||||++||.+ +. +.++++++.++..|+++++....
T Consensus 203 g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~~~~p~~~~i~~It~~e~~~~i~~g~--------------- 267 (313)
T PRK12454 203 GELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGH--------------- 267 (313)
T ss_pred CcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCCCCCCCCeEccccCHHHHHHHHhcCC---------------
Confidence 5788875 499999999999999999999987 44 35678999999999999984311
Q ss_pred cccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCC
Q 017739 93 EDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV 172 (366)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV 172 (366)
+..| | |.++|.+|+.+++.|+
T Consensus 268 -------------------------------------~~~G-g---------------------M~pKv~AA~~~v~~gg 288 (313)
T PRK12454 268 -------------------------------------FKAG-S---------------------MGPKILAAIRFVENGG 288 (313)
T ss_pred -------------------------------------cCCC-C---------------------hHHHHHHHHHHHHcCC
Confidence 0011 2 8899999999999999
Q ss_pred CeEEecccccCchhhhhhhcccCccceee
Q 017739 173 QRVHLLDGTIGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 173 ~rvhlvd~~~~g~ll~Elft~~G~GTmI~ 201 (366)
.++||.+.. . +.+++... .||.|.
T Consensus 289 ~~a~I~~~~---~-i~~aL~G~-~GT~I~ 312 (313)
T PRK12454 289 KRAIIASLE---K-AVEALEGK-TGTRII 312 (313)
T ss_pred CeEEECchH---H-HHHHHCCC-CCeEeC
Confidence 999998532 2 33433222 688763
No 71
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.75 E-value=6.3e-08 Score=83.38 Aligned_cols=92 Identities=26% Similarity=0.351 Sum_probs=73.4
Q ss_pred HHHhhcCcEEEEEECCeEEEEEEEeeecCC-CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC-CCEEEEEc-HHHH
Q 017739 239 ELLKALDSFYVVEREGQIIACAALFPFFKE-KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT-TRTA 315 (366)
Q Consensus 239 ~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~-~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G-i~~l~l~t-t~A~ 315 (366)
++.....++++.+.+|++++|+.+.+.... ...-|+.++|+|++||+|+|.+||+.+++.+.+.. -+.+.+.. ....
T Consensus 44 Dl~~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq 123 (155)
T COG2153 44 DLLGDTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQ 123 (155)
T ss_pred ccccccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHH
Confidence 333455688888889999999999974322 33569999999999999999999999999998875 34455555 3678
Q ss_pred HHHHHCCCeEeceec
Q 017739 316 DWFKSRGFRECSIEM 330 (366)
Q Consensus 316 ~fY~k~GF~~~~~~~ 330 (366)
.||.++||+.++...
T Consensus 124 ~fYa~~GFv~~~e~y 138 (155)
T COG2153 124 DFYASFGFVRVGEEY 138 (155)
T ss_pred HHHHHhCcEEcCchh
Confidence 999999999998554
No 72
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=98.75 E-value=3e-08 Score=94.03 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=80.8
Q ss_pred cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCC--HHHHHHHHHHhhhhhHHHHhHHHHhhc
Q 017739 22 CAFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLT--LQEADSLIRQRVKQSEIAANYVKAVAE 92 (366)
Q Consensus 22 ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~--~~~a~~~l~~~~~~~~~~~~~~~~~~~ 92 (366)
+|..+.++|.+|..+|.+|+||+||++||.+ +.+ .++++++.++ .++++++......
T Consensus 137 ~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~-------------- 202 (251)
T cd04242 137 EEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGS-------------- 202 (251)
T ss_pred eccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCc--------------
Confidence 4567889999999999999999999999998 443 2578999999 7777776411100
Q ss_pred cccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCC
Q 017739 93 EDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV 172 (366)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV 172 (366)
.+..+ +|.++|.+|..|.+.|+
T Consensus 203 ------------------------------------~~~tg----------------------gm~~Kl~a~~~a~~~gi 224 (251)
T cd04242 203 ------------------------------------SVGTG----------------------GMRTKLKAARIATEAGI 224 (251)
T ss_pred ------------------------------------CcccC----------------------CcHHHHHHHHHHHHCCC
Confidence 00011 28899999999999999
Q ss_pred CeEEecccccCchhhhhhhcccCcccee
Q 017739 173 QRVHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 173 ~rvhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
+ ++++++..++.+ .+++...+.||++
T Consensus 225 ~-v~I~~g~~~~~i-~~~l~g~~~GT~i 250 (251)
T cd04242 225 P-VVIANGRKPDVL-LDILAGEAVGTLF 250 (251)
T ss_pred c-EEEEcCCCCCHH-HHHHcCCCCCeEe
Confidence 7 999999988754 4666777789986
No 73
>PRK12353 putative amino acid kinase; Reviewed
Probab=98.73 E-value=5.1e-08 Score=95.47 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHcCCceEEEEeCCc-cc----CCCCcccccCCHHHHHHHHH
Q 017739 26 NFSTYEVATACALAIEADKLICIIDGP-IL----DESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 26 N~~~~~vA~~~A~~l~AdKli~l~~~~-~~----~~~g~l~~~l~~~~a~~~l~ 74 (366)
|+|.|++|..+|.+|+|||||++||.+ +. +.++++++.++.+++++++.
T Consensus 211 ~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~~~a~~i~~i~~~e~~~~~~ 264 (314)
T PRK12353 211 VIDKDFASAKLAELVDADLLIILTAVDKVYINFGKPNQKKLDEVTVSEAEKYIE 264 (314)
T ss_pred ecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCCCCCeECcCcCHHHHHHHHh
Confidence 399999999999999999999999987 44 23578999999988888873
No 74
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.69 E-value=1.7e-07 Score=82.95 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=87.6
Q ss_pred ccCHHHHHHHHHHHHHcCcCccCC-HH-HHHhhc---CcEEEE--EECCeEEEEEEEeeecC-CCeEEEEEEEECccccC
Q 017739 213 VTDLSGIKQIIQPLVESGALVRRT-DE-ELLKAL---DSFYVV--EREGQIIACAALFPFFK-EKCGEVAAIGVSPECRG 284 (366)
Q Consensus 213 ~~Di~~I~~Li~~~~~~~~~~~rs-~e-~l~~~i---~~~~V~--e~dg~IVG~a~l~~~~d-~~~~eL~~laV~P~yRG 284 (366)
..|.+++++--..+.+..|.-.++ +. .+.+.- -...++ |....+||...+.+... .....+..+.|+.+.||
T Consensus 18 iH~rPELlk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG 97 (225)
T KOG3397|consen 18 LHDRPELLKESMTLINSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRG 97 (225)
T ss_pred ccccHHHHHHHHHHHhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhcc
Confidence 356677766666666666543322 11 122221 233333 55578999999998654 36778999999999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEece
Q 017739 285 QGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 328 (366)
Q Consensus 285 qGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~ 328 (366)
+|.|+.||+.+++++|..|++.+++.|..-.+||+++||+.+..
T Consensus 98 ~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ~~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 98 LGFGKFLMKSTEKWMREKGFNEAYLSTDDQCRFYESLGYEKCDP 141 (225)
T ss_pred ccHHHHHHHHHHHHHHHhhhhheeeecccchhhhhhhcccccCc
Confidence 99999999999999999999999999988899999999998873
No 75
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.69 E-value=1.2e-07 Score=84.98 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=88.8
Q ss_pred cCHHHHHHHHHHHHHc-----C--cCccCCHHHHHhhcCcEEEEEECC-eEEEEEEEeeecCCC--eEEEEEEEECcccc
Q 017739 214 TDLSGIKQIIQPLVES-----G--ALVRRTDEELLKALDSFYVVEREG-QIIACAALFPFFKEK--CGEVAAIGVSPECR 283 (366)
Q Consensus 214 ~Di~~I~~Li~~~~~~-----~--~~~~rs~e~l~~~i~~~~V~e~dg-~IVG~a~l~~~~d~~--~~eL~~laV~P~yR 283 (366)
+|++....|+...... . +....-.+++...-..|+++..++ ++||+..+....+.+ +.++.-+-|.+.||
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR 133 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYR 133 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhh
Confidence 7888888888763222 2 222223555666666777777766 899999999776665 56666778888899
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEeceec
Q 017739 284 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 284 GqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~~ 330 (366)
|+|||+.||+.++..+.....+.|.+.+ .++..||+++||.......
T Consensus 134 ~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 134 GKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEESP 184 (202)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCCC
Confidence 9999999999999999888888776665 6999999999999876543
No 76
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.68 E-value=2.8e-07 Score=73.29 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=48.2
Q ss_pred EEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 271 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 271 ~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
++|..++|+|+|||+|+|+.++..+.+.+.+.|... ++.+ ..|.++|+|+||+.....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~-~l~v~~~N~~s~~ly~klGf~~~~~~ 83 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTP-FLYVDADNEASIRLYEKLGFREIEEE 83 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEE-EEEEETT-HHHHHHHHHCT-EEEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcE-EEEEECCCHHHHHHHHHcCCEEEEEE
Confidence 789999999999999999999999999999988754 3333 488999999999988543
No 77
>PRK09411 carbamate kinase; Reviewed
Probab=98.64 E-value=1.1e-07 Score=91.82 Aligned_cols=52 Identities=23% Similarity=0.200 Sum_probs=45.5
Q ss_pred cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC----CCCcccccCCHHHHHHHH
Q 017739 22 CAFANFSTYEVATACALAIEADKLICIIDGP-ILD----ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 22 ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~----~~g~l~~~l~~~~a~~~l 73 (366)
|..+|+|.|.+|..+|.+|+|||||+|||.+ +.+ +++++++.++.+++++++
T Consensus 195 G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~~p~~~~I~~it~~e~~~~~ 251 (297)
T PRK09411 195 GSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFA 251 (297)
T ss_pred CeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCCCCCCcCCCCcCHHHHHHhc
Confidence 5678999999999999999999999999998 443 346899999999998776
No 78
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.59 E-value=4e-07 Score=64.48 Aligned_cols=62 Identities=34% Similarity=0.483 Sum_probs=54.1
Q ss_pred EEEEECCeEEEEEEEeeecC-CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEE
Q 017739 248 YVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 309 (366)
Q Consensus 248 ~V~e~dg~IVG~a~l~~~~d-~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l 309 (366)
+++..+++++|++.+.+... ....++..++|+|+|||+|+|++++..+++++++.|++.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 45667899999999986542 467899899999999999999999999999999999988875
No 79
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.58 E-value=3.6e-07 Score=86.09 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=65.1
Q ss_pred EEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCE-EEEEc--HHHHHHHHHCCCeEe
Q 017739 250 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM-LFLLT--TRTADWFKSRGFREC 326 (366)
Q Consensus 250 ~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~-l~l~t--t~A~~fY~k~GF~~~ 326 (366)
.+.||+||+.+..... .+.++.|..++++|+|||+|++++|+..+-...-..|.+. +++.+ ..|.+.|++.||+..
T Consensus 182 ~~~d~~iVa~A~t~a~-~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~riGF~~~ 260 (268)
T COG3393 182 LEGDGKIVAKAETAAE-NPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQRIGFREI 260 (268)
T ss_pred EccCCcEEEeeecccc-CCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHHhCCeec
Confidence 3455699999998843 3578999999999999999999999999999998888664 44433 688999999999998
Q ss_pred ce
Q 017739 327 SI 328 (366)
Q Consensus 327 ~~ 328 (366)
+.
T Consensus 261 g~ 262 (268)
T COG3393 261 GE 262 (268)
T ss_pred ce
Confidence 74
No 80
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=82.76 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=85.3
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEE-ECCeEEEEEEEeeec----CCCeEEEEEEEECcc
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFF----KEKCGEVAAIGVSPE 281 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e-~dg~IVG~a~l~~~~----d~~~~eL~~laV~P~ 281 (366)
.||.++.+|+-.+...--....+.+......-....|-...||++ .+|+|||++...... +...++|..++|...
T Consensus 3 ~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs 82 (193)
T KOG3235|consen 3 NIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRS 82 (193)
T ss_pred ccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhh
Confidence 588999988776655421111111111111122223334567776 689999999888655 345789999999999
Q ss_pred ccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHH-HCCCeEecee
Q 017739 282 CRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFK-SRGFRECSIE 329 (366)
Q Consensus 282 yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~-k~GF~~~~~~ 329 (366)
||+.|+|++||.....-..+ .+.+.+.+.+ ..|.++|+ .+||++++++
T Consensus 83 ~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 83 YRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVE 136 (193)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecc
Confidence 99999999999986654433 4667777777 36899999 6999999876
No 81
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=98.57 E-value=1.9e-07 Score=93.53 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=81.9
Q ss_pred cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCH--HHHHHHHHHhhhhhHHHHhHHHHhhc
Q 017739 22 CAFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTL--QEADSLIRQRVKQSEIAANYVKAVAE 92 (366)
Q Consensus 22 ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~--~~a~~~l~~~~~~~~~~~~~~~~~~~ 92 (366)
.|..+.++|.+|..+|.+|+||+||++||.+ +.+ +++++++.++. +++++++.....
T Consensus 146 ~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~-------------- 211 (372)
T PRK05429 146 DEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGS-------------- 211 (372)
T ss_pred ecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCC--------------
Confidence 3566789999999999999999999999998 433 35789999987 566666521000
Q ss_pred cccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCC
Q 017739 93 EDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV 172 (366)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV 172 (366)
.+..+ +|.++|.+|..|.+.|+
T Consensus 212 ------------------------------------~~gtG----------------------GM~~Kl~aa~~a~~~Gi 233 (372)
T PRK05429 212 ------------------------------------GLGTG----------------------GMATKLEAARIATRAGI 233 (372)
T ss_pred ------------------------------------CcCcC----------------------CcHHHHHHHHHHHHCCC
Confidence 00011 28999999999999999
Q ss_pred CeEEecccccCchhhhhhhcccCccceeecc
Q 017739 173 QRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 173 ~rvhlvd~~~~g~ll~Elft~~G~GTmI~~~ 203 (366)
+ ++|++++.++. +.+++...+.||.|...
T Consensus 234 ~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 234 P-VVIASGREPDV-LLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred e-EEEEcCCCccH-HHHHhcCCCCCEEEeeC
Confidence 7 99999998874 55677777899998643
No 82
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=98.56 E-value=3.5e-07 Score=88.45 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=77.4
Q ss_pred cccc--CCHHHHHHHHHHHcCCceEEEEeCCc-ccC-----CCCcccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhccc
Q 017739 23 AFAN--FSTYEVATACALAIEADKLICIIDGP-ILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 94 (366)
Q Consensus 23 e~~N--~~~~~vA~~~A~~l~AdKli~l~~~~-~~~-----~~g~l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (366)
+.+| +|+|.+|..+|.+|+||+||++||.+ +.+ .++++++.++..+.+.+.....
T Consensus 172 ~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~~~----------------- 234 (284)
T cd04256 172 QGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTK----------------- 234 (284)
T ss_pred cccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcccc-----------------
Confidence 3456 89999999999999999999999988 443 3478999998755443321000
Q ss_pred cccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCe
Q 017739 95 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 174 (366)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~r 174 (366)
.+...| +|.++|.+|..|.+.|++
T Consensus 235 ---------------------------------s~~gtG----------------------GM~~Kl~Aa~~a~~~Gi~- 258 (284)
T cd04256 235 ---------------------------------SRVGTG----------------------GMEAKVKAALWALQGGTS- 258 (284)
T ss_pred ---------------------------------cCcccC----------------------CcHHHHHHHHHHHHCCCe-
Confidence 000011 388999999999999996
Q ss_pred EEecccccCchhhhhhhcccCcccee
Q 017739 175 VHLLDGTIGGVLLLELFKRDGMGTMV 200 (366)
Q Consensus 175 vhlvd~~~~g~ll~Elft~~G~GTmI 200 (366)
++|++++.++.+ .+++.....||.+
T Consensus 259 v~I~~G~~~~~i-~~~l~G~~~GT~~ 283 (284)
T cd04256 259 VVITNGMAGDVI-TKILEGKKVGTFF 283 (284)
T ss_pred EEEEcCCCccHH-HHHHcCCCCCEEe
Confidence 899999988775 4666667789876
No 83
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.51 E-value=1.6e-07 Score=85.03 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=84.9
Q ss_pred cceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCC---------eEEEEE
Q 017739 205 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEK---------CGEVAA 275 (366)
Q Consensus 205 ~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~---------~~eL~~ 275 (366)
...++..++.|+..+..|.+......+...+.++.+.. .+..-++..++..+|-.++....... ..+|..
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~-~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~ 94 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSN-GDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILS 94 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhc-CCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEe
Confidence 35799999999999999976655444433222221111 12222223334444444443221111 378999
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCC-CCEEEEEc----HHHHHHHHHCCCeEece
Q 017739 276 IGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT----TRTADWFKSRGFRECSI 328 (366)
Q Consensus 276 laV~P~yRGqGiG~~LL~~l~~~Ar~~G-i~~l~l~t----t~A~~fY~k~GF~~~~~ 328 (366)
+.|.|.||++|||+.||+++.+.+.+.. ++.+++.+ ..+..||+++||+....
T Consensus 95 Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~ 152 (187)
T KOG3138|consen 95 LGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVER 152 (187)
T ss_pred ecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeec
Confidence 9999999999999999999999998887 88888877 37899999999999874
No 84
>PRK12686 carbamate kinase; Reviewed
Probab=98.44 E-value=9.9e-07 Score=86.05 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHcCCceEEEEeCCc-ccC----CCCcccccCCHHHHHHHHH
Q 017739 26 NFSTYEVATACALAIEADKLICIIDGP-ILD----ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 26 N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~----~~g~l~~~l~~~~a~~~l~ 74 (366)
++|.|.+|..+|.+|+||+||+|||.+ +.+ .++++++.++.+++++++.
T Consensus 209 vid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~ 262 (312)
T PRK12686 209 VIDKDFASEKLAEQIDADLLIILTGVENVFINFNKPNQQKLDDITVAEAKQYIA 262 (312)
T ss_pred ccCccHHHHHHHHHcCCCEEEEEeCchhhccCCCCCCCeECCccCHHHHHHHhh
Confidence 458899999999999999999999998 432 4578999999999999884
No 85
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4e-06 Score=73.25 Aligned_cols=124 Identities=21% Similarity=0.218 Sum_probs=87.0
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcC--c-----cCCHHHHHhhc---------CcEEEEEE---CCeEEEEEEEeeec-
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGAL--V-----RRTDEELLKAL---------DSFYVVER---EGQIIACAALFPFF- 266 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~--~-----~rs~e~l~~~i---------~~~~V~e~---dg~IVG~a~l~~~~- 266 (366)
.+|+....|+..+..+........+. . ....+.+...+ ..+.+... ++++||++.+....
T Consensus 11 ~lr~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~ 90 (187)
T COG1670 11 LLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIGLSDIDR 90 (187)
T ss_pred EeecCcHhHHHHHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEEEEEecc
Confidence 45778888888888554333222111 1 12222222221 12333322 25899999999765
Q ss_pred --CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEeceecc
Q 017739 267 --KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIEMI 331 (366)
Q Consensus 267 --d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~~L 331 (366)
+...++++ +.+.|+|+|+|+|+..+..+++++.. .+++++.+.+ .++.+.++|+||+..+....
T Consensus 91 ~~~~~~~~ig-~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~ 161 (187)
T COG1670 91 AANGDLAEIG-YWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELRQ 161 (187)
T ss_pred ccccceEEEE-EEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhhhhhh
Confidence 35678885 77799999999999999999999966 7999999888 58999999999999886543
No 86
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.41 E-value=1.6e-06 Score=90.18 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=62.2
Q ss_pred CCeEEEEEEEeeecC-------CCeEEEEEEE-----------ECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HH
Q 017739 253 EGQIIACAALFPFFK-------EKCGEVAAIG-----------VSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TR 313 (366)
Q Consensus 253 dg~IVG~a~l~~~~d-------~~~~eL~~la-----------V~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~ 313 (366)
++.+||++.+....+ .+.+.|..+. ++|+|||+|+|++||+++++.|++.|++.+.+.+ ..
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 468999999985432 1234444444 4599999999999999999999999999999866 58
Q ss_pred HHHHHHHCCCeEecee
Q 017739 314 TADWFKSRGFRECSIE 329 (366)
Q Consensus 314 A~~fY~k~GF~~~~~~ 329 (366)
+.+||+++||+..+..
T Consensus 502 A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 502 VREYYRKLGYELDGPY 517 (522)
T ss_pred HHHHHHHCCCEEEcce
Confidence 9999999999987643
No 87
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=76.65 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=87.0
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEE-CCeEEEEEEEeee--cCCCeEEEEEEEECcccc
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPF--FKEKCGEVAAIGVSPECR 283 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~-dg~IVG~a~l~~~--~d~~~~eL~~laV~P~yR 283 (366)
++|+.+.+|+-..-.+.-......+..+.....+..+-+.+.+++. +++|.|++.-... .....+++..+.|.|+||
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~R 82 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYR 82 (173)
T ss_pred ccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHH
Confidence 5778888777665555433344444445555666666667777765 4678888877432 123468899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEec
Q 017739 284 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 327 (366)
Q Consensus 284 GqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~ 327 (366)
+.|+|+.||+.+++...+.+.-.+.+.+ +-|+.+|+++||..-.
T Consensus 83 rl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR 130 (173)
T KOG3234|consen 83 RLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYR 130 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEE
Confidence 9999999999999998776554444433 6899999999998754
No 88
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.36 E-value=5.7e-06 Score=64.69 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=58.0
Q ss_pred EEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHC
Q 017739 249 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSR 321 (366)
Q Consensus 249 V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~ 321 (366)
.+..||+.+|.+.... +++...|....|.|++||||+|+.|++.++++|+++|. +|...|.=+.+|++++
T Consensus 3 ~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~-kv~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGL-KVVPTCSYVAKYFRRH 72 (78)
T ss_dssp EEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT--EEEETSHHHHHHHHH-
T ss_pred EEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCC-EEEEECHHHHHHHHhC
Confidence 3456688999999864 66889999999999999999999999999999999986 5667777788888874
No 89
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.34 E-value=5.3e-06 Score=75.82 Aligned_cols=103 Identities=21% Similarity=0.312 Sum_probs=66.4
Q ss_pred CcEEEEEECC--eEEEEEEEeeecC------------------------------------CCeEEEEEEEECccccCCc
Q 017739 245 DSFYVVEREG--QIIACAALFPFFK------------------------------------EKCGEVAAIGVSPECRGQG 286 (366)
Q Consensus 245 ~~~~V~e~dg--~IVG~a~l~~~~d------------------------------------~~~~eL~~laV~P~yRGqG 286 (366)
...++...++ +|+|++.+..... -....|-.|||||++|++|
T Consensus 27 h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~G 106 (196)
T PF13718_consen 27 HRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRMG 106 (196)
T ss_dssp EEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SSS
T ss_pred ceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcCC
Confidence 3678888888 9999998863110 1456788999999999999
Q ss_pred HHHHHHHHHHHHH-------------------------HHCCCCEEE---EEcHHHHHHHHHCCCeEeceeccchHHHhh
Q 017739 287 QGDKLLDYIEKKA-------------------------ASLGLDMLF---LLTTRTADWFKSRGFRECSIEMIPEERRKR 338 (366)
Q Consensus 287 iG~~LL~~l~~~A-------------------------r~~Gi~~l~---l~tt~A~~fY~k~GF~~~~~~~Lp~~r~~~ 338 (366)
+|+++|+.+++++ +..++..+- -.|..-.+|+.|+||.++-+..-+.+
T Consensus 107 ~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~~~n~---- 182 (196)
T PF13718_consen 107 YGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLGQTRNE---- 182 (196)
T ss_dssp HHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-SS--T----
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEecCccc----
Confidence 9999999999999 466777653 33357789999999999987654432
Q ss_pred hcCCCCceeEEEec
Q 017739 339 INLSRNSKYYMKKL 352 (366)
Q Consensus 339 Y~~~r~s~vl~k~l 352 (366)
--..+|.+++|.|
T Consensus 183 -~SGe~S~imlr~l 195 (196)
T PF13718_consen 183 -ASGEHSAIMLRPL 195 (196)
T ss_dssp -TT---EEEEEEE-
T ss_pred -ccCceeeeEEeec
Confidence 1225777888765
No 90
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.34 E-value=7e-06 Score=78.32 Aligned_cols=108 Identities=24% Similarity=0.345 Sum_probs=86.6
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEEC-CeEEEEEEEeeecCCCeEEEEEEEECccccCC
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVERE-GQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~d-g~IVG~a~l~~~~d~~~~eL~~laV~P~yRGq 285 (366)
.++.+...|...+..+-+-+.+.+.. ++..++.+.++..+ ++||+|..+.- --|-|+||+|.+||.
T Consensus 5 ~~~~v~~~e~~k~~~i~~fL~~~~l~-------~d~~ve~~v~~~~~~~~iiacGsiaG------nvikcvAvs~s~qGe 71 (352)
T COG3053 5 TFSRVKRSEKKKMAEIAEFLHQNDLR-------VDTTVEYFVAIYRDNEEIIACGSIAG------NVIKCVAVSESLQGE 71 (352)
T ss_pred EEEEEccchhhHHHHHHHHHhhcCce-------ecccceEEEEEEcCCCcEEEeccccc------ceeEEEEechhcccc
Confidence 46666667766666665444554432 44556777777665 99999998872 258899999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 017739 286 GQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 327 (366)
Q Consensus 286 GiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~ 327 (366)
|+.-+|+.++++.+-+.|...+|+.| +....+|+.+||.+..
T Consensus 72 Gl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i~ 114 (352)
T COG3053 72 GLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQCGFSEIA 114 (352)
T ss_pred cHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHhCCceEee
Confidence 99999999999999999999999999 6789999999999875
No 91
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=98.31 E-value=2.2e-06 Score=83.61 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=49.6
Q ss_pred ccccCCCccc-------------cccccC----CHHHHHHHHHHHcCCceEEEEeCCc-ccC----CCCcccccCCHHHH
Q 017739 12 VNVDFESLIL-------------CAFANF----STYEVATACALAIEADKLICIIDGP-ILD----ESGHLIRFLTLQEA 69 (366)
Q Consensus 12 ~~~~~~~~~~-------------ge~~N~----~~~~vA~~~A~~l~AdKli~l~~~~-~~~----~~g~l~~~l~~~~a 69 (366)
.-++.|-||+ |+++|+ |.|.+|..+|.+|+||+||++||.+ +.+ .++++++.++.+++
T Consensus 176 ~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~~pda~~i~~Is~~e~ 255 (308)
T cd04235 176 TLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFGKPNQKALEQVTVEEL 255 (308)
T ss_pred HHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCCCCCCeEcCCcCHHHH
Confidence 3466777654 345554 5699999999999999999999998 443 35789999999999
Q ss_pred HHHHH
Q 017739 70 DSLIR 74 (366)
Q Consensus 70 ~~~l~ 74 (366)
++++.
T Consensus 256 ~~l~~ 260 (308)
T cd04235 256 EKYIE 260 (308)
T ss_pred HHHHh
Confidence 88874
No 92
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=98.30 E-value=2.8e-06 Score=81.42 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=72.9
Q ss_pred ccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCH--HHHHHHHHHhhhhhHHHHhHHHHhhcccc
Q 017739 25 ANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTL--QEADSLIRQRVKQSEIAANYVKAVAEEDI 95 (366)
Q Consensus 25 ~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~--~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (366)
+| +.|.+|..+|.+|+||+|+++||.+ +.+ .++++++.++- .+..++... . .
T Consensus 153 ~~-~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~-~----------------~- 213 (266)
T PRK12314 153 FG-DNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGG-A----------------G- 213 (266)
T ss_pred ec-chHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhcc-C----------------C-
Confidence 55 6899999999999999999999997 443 24667777763 222111100 0 0
Q ss_pred ccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCeE
Q 017739 96 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 175 (366)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~rv 175 (366)
.. .+.| +|.+++.+|..|.+.|++ +
T Consensus 214 --------------------------------~~--~~tG--------------------GM~~Kl~aa~~a~~~gv~-v 238 (266)
T PRK12314 214 --------------------------------SK--FGTG--------------------GMVTKLKAAKFLMEAGIK-M 238 (266)
T ss_pred --------------------------------CC--cccC--------------------chHHHHHHHHHHHHCCCe-E
Confidence 00 1101 289999999999999997 9
Q ss_pred EecccccCchhhhhhhcccCccceeec
Q 017739 176 HLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 176 hlvd~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
+|++++.++.+ .+++...+.||.+..
T Consensus 239 ~I~~g~~~~~i-~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 239 VLANGFNPSDI-LDFLEGESIGTLFAP 264 (266)
T ss_pred EEEcCCCchHH-HHHHcCCCCceEEcc
Confidence 99999988875 466666778998853
No 93
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=98.30 E-value=2e-06 Score=79.20 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=43.2
Q ss_pred ccccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCcccccCCHHHH
Q 017739 21 LCAFANFSTYEVATACALAIEADKLICIIDGP-ILDESGHLIRFLTLQEA 69 (366)
Q Consensus 21 ~ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~l~~~l~~~~a 69 (366)
+++.+|+|+|.+|..+|.+|+||+||++||.+ +.+.++++++.++..++
T Consensus 108 ~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~ 157 (203)
T cd04240 108 LPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL 157 (203)
T ss_pred CCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHh
Confidence 37789999999999999999999999999998 56777899999987654
No 94
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.27 E-value=6.5e-06 Score=73.03 Aligned_cols=122 Identities=18% Similarity=0.296 Sum_probs=88.1
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCc-------cCCHHHHHhhc-------------------CcEEEEEECCeEEEEE
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALV-------RRTDEELLKAL-------------------DSFYVVEREGQIIACA 260 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~-------~rs~e~l~~~i-------------------~~~~V~e~dg~IVG~a 260 (366)
.++..+..|-.+++++...+...+... ....+.++.++ ..||.+..|+++||++
T Consensus 5 ~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG~i 84 (174)
T COG3981 5 KLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVGFI 84 (174)
T ss_pred cccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEEEE
Confidence 466667777777777777664443221 11112222221 1456666689999999
Q ss_pred EEeeecC----CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 261 ALFPFFK----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 261 ~l~~~~d----~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
.+...-+ ..-++|+ +.|.|+.||+|+|+++|+.++++|++.|++.|.+.+ ..+.+.-+++|=...+..
T Consensus 85 ~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~ 160 (174)
T COG3981 85 NLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGILENEF 160 (174)
T ss_pred EeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEEeEEE
Confidence 9986432 2367885 899999999999999999999999999999998888 378889999886665544
No 95
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=98.24 E-value=4.8e-06 Score=77.34 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=48.2
Q ss_pred ccCCCccc--cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHH
Q 017739 14 VDFESLIL--CAFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 14 ~~~~~~~~--ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l 73 (366)
+..+.+|+ |-+-++++|.+|..+|.+|+||+|+++||.+ +.+ .++++++.++.++++++.
T Consensus 100 l~~g~ipv~~G~~~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~ 168 (221)
T TIGR02076 100 MSLGKIVVMGGTHPGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIV 168 (221)
T ss_pred HHcCCEEEEcCCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHh
Confidence 34455555 5445689999999999999999999999987 432 367899999988888776
No 96
>PRK12354 carbamate kinase; Reviewed
Probab=98.19 E-value=5.9e-06 Score=80.41 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=74.1
Q ss_pred cccccC----CHHHHHHHHHHHcCCceEEEEeCCc-ccCC----CCcccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhc
Q 017739 22 CAFANF----STYEVATACALAIEADKLICIIDGP-ILDE----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAE 92 (366)
Q Consensus 22 ge~~N~----~~~~vA~~~A~~l~AdKli~l~~~~-~~~~----~g~l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 92 (366)
|+.+|+ +.|.+|..+|.+|+||+||+|||.+ +.+. +.++++.++.++++++ .-.
T Consensus 194 ~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~~p~~k~i~~it~~e~~~~--~f~--------------- 256 (307)
T PRK12354 194 GKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWGKPTQRAIAQATPDELREL--GFA--------------- 256 (307)
T ss_pred CceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCCCCCCeECCCCCHHHHHhh--CCC---------------
Confidence 457785 5799999999999999999999998 4432 3468999999888876 100
Q ss_pred cccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCC
Q 017739 93 EDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV 172 (366)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV 172 (366)
.| | |.+|+++|+.+.+.|+
T Consensus 257 ---------------------------------------~G-g---------------------M~pKV~AA~~~~~~gg 275 (307)
T PRK12354 257 ---------------------------------------AG-S---------------------MGPKVEAACEFVRATG 275 (307)
T ss_pred ---------------------------------------cC-C---------------------hHHHHHHHHHHHHhCC
Confidence 22 2 8999999999999888
Q ss_pred CeEEecccccCchhhhhhhcccCccceeecc
Q 017739 173 QRVHLLDGTIGGVLLLELFKRDGMGTMVASD 203 (366)
Q Consensus 173 ~rvhlvd~~~~g~ll~Elft~~G~GTmI~~~ 203 (366)
.+++|.+. ..+.+++.. ..||.|..+
T Consensus 276 ~~viI~~~----~~l~~al~G-~~GT~I~~~ 301 (307)
T PRK12354 276 KIAGIGSL----EDIQAILAG-EAGTRISPE 301 (307)
T ss_pred CEEEECCH----HHHHHHHCC-CCceEEecC
Confidence 88988532 234555543 389988653
No 97
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=98.19 E-value=8e-06 Score=73.20 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=82.7
Q ss_pred hhhhhhcccCccceeeccccceEEe-CCcc-CHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEe
Q 017739 186 LLLELFKRDGMGTMVASDLYEGTRT-AKVT-DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF 263 (366)
Q Consensus 186 ll~Elft~~G~GTmI~~~~~~~IR~-at~~-Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~ 263 (366)
|..||||+.|.||+|++...+.... ...- |.+.+.+++..........+...+.+...+...++ ++..-|++.+.
T Consensus 2 L~kELFt~sgagTlirrG~~i~~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~---d~~y~~~AIVt 78 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGYKILKHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYV---DEDYEGAAIVT 78 (170)
T ss_dssp HHHHHHSSSTSSEEEE----EEEESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEE---ETTSSEEEEEE
T ss_pred ccchhcCCCCCceEEecCeeeEEecCccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEE---eCCceEEEEEE
Confidence 6789999999999999987754333 4444 89999999876653333333333444333333333 34444555554
Q ss_pred e---ecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHHHH--CCCeE
Q 017739 264 P---FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWFKS--RGFRE 325 (366)
Q Consensus 264 ~---~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t---t~A~~fY~k--~GF~~ 325 (366)
+ ......++|..++|.|..+|.|++..++..+.+.. ..++..+ .+..+||-+ .|+-.
T Consensus 79 ~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~-----p~L~Wrsr~~n~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 79 PEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDF-----PKLFWRSREDNPNNKWYFERSDGSFK 143 (170)
T ss_dssp EE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH------SSEEEEEETT-TTHHHHHHH-SEEEE
T ss_pred ecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhc-----cceEEEecCCCCcccEEEEeeEEEEE
Confidence 3 33456999999999999999999999999986655 2355555 466788844 56655
No 98
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=98.16 E-value=8.1e-06 Score=81.58 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-ccCCC------CcccccCCHHHHHH-HHHHhhhhhHHHHhHHHHhhcccccccc
Q 017739 28 STYEVATACALAIEADKLICIIDGP-ILDES------GHLIRFLTLQEADS-LIRQRVKQSEIAANYVKAVAEEDITCFG 99 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~------g~l~~~l~~~~a~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
++|.+|+.+|.+|+||+||++||.+ +.+.+ .++++.++..+.+. .+.... .
T Consensus 144 d~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~----------------~----- 202 (363)
T TIGR01027 144 DNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDS----------------G----- 202 (363)
T ss_pred ChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCC----------------C-----
Confidence 8999999999999999999999998 44433 47889887542221 121000 0
Q ss_pred CCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCeEEecc
Q 017739 100 HSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLD 179 (366)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~rvhlvd 179 (366)
.+ .+ ..+|.++|.+|..|.+.|++ ++|++
T Consensus 203 ----------------------------~~--~g--------------------tGGM~~Kl~Aa~~a~~~gi~-v~I~~ 231 (363)
T TIGR01027 203 ----------------------------SS--VG--------------------TGGMRTKLQAADLATRAGVP-VIIAS 231 (363)
T ss_pred ----------------------------cC--cC--------------------cCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 00 11 11389999999999999997 99999
Q ss_pred cccCchhhhhhhcccCccceeec
Q 017739 180 GTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 180 ~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
+..++.+. .++.....||.|..
T Consensus 232 g~~~~~l~-~~l~g~~~GT~i~~ 253 (363)
T TIGR01027 232 GSKPEKIA-DALEGAPVGTLFHA 253 (363)
T ss_pred CCCccHHH-HHhcCCCCcEEEee
Confidence 99886655 55666678999854
No 99
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=98.13 E-value=6.8e-06 Score=82.20 Aligned_cols=101 Identities=21% Similarity=0.319 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCH--HHHHHHHHHhhhhhHHHHhHHHHhhccccccc
Q 017739 28 STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTL--QEADSLIRQRVKQSEIAANYVKAVAEEDITCF 98 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~--~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (366)
+.|.+|..+|.+|+||.||++||.+ +.+ ++++++++++. .+.+.+... . .
T Consensus 148 dnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~-~----------------~---- 206 (368)
T PRK13402 148 DNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGG-A----------------G---- 206 (368)
T ss_pred ChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcc-c----------------c----
Confidence 6899999999999999999999988 332 35789999975 333333200 0 0
Q ss_pred cCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCeEEec
Q 017739 99 GHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLL 178 (366)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~rvhlv 178 (366)
.++.+| +|.++|.+|..|.+.|++ ++|+
T Consensus 207 -----------------------------s~~gtG----------------------GM~~Kl~Aa~~a~~~gi~-v~I~ 234 (368)
T PRK13402 207 -----------------------------SNVGTG----------------------GMRTKIQAAKIAMSHGIE-TFIG 234 (368)
T ss_pred -----------------------------cCcCcC----------------------CchHHHHHHHHHHHcCCc-EEEE
Confidence 000012 388999999999999997 7899
Q ss_pred ccccCchhhhhhhcccCccceeec
Q 017739 179 DGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 179 d~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
++..++.+. +++.....||.+..
T Consensus 235 ~g~~~~~l~-~~l~g~~~GT~i~~ 257 (368)
T PRK13402 235 NGFTADIFN-QLLKGQNPGTYFTP 257 (368)
T ss_pred cCCCchHHH-HHhcCCCCceEEec
Confidence 999887554 56666678999854
No 100
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.13 E-value=7.5e-06 Score=69.49 Aligned_cols=130 Identities=19% Similarity=0.194 Sum_probs=95.5
Q ss_pred ccceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeee----c----------CCC
Q 017739 204 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF----F----------KEK 269 (366)
Q Consensus 204 ~~~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~----~----------d~~ 269 (366)
+++.++.....|.++++.|.++-.- .+.....+.+.......+++.++|.+.|+...... . -++
T Consensus 6 mp~~~~D~~apd~aavLaLNNeha~--elswLe~erL~~l~~eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe~ 83 (167)
T COG3818 6 MPILIRDVRAPDLAAVLALNNEHAL--ELSWLELERLYRLYKEAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYEN 83 (167)
T ss_pred cceehhhhcCCchhhHHhccchhhh--hccccCHHHHHHHHHHHHHHhhccchhhheeeccccccCCCCceeehhhhCCc
Confidence 3456777888899999998654211 12222345554444444577888887776554321 1 136
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHHCCCeEeceeccchHH
Q 017739 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSIEMIPEER 335 (366)
Q Consensus 270 ~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t------t~A~~fY~k~GF~~~~~~~Lp~~r 335 (366)
..++..+.|....||+|+|++|.+.+.++|+..|...+.+.+ ..+..|.-.+||.++|...+...+
T Consensus 84 F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihggk 155 (167)
T COG3818 84 FFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHGGK 155 (167)
T ss_pred eEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEecch
Confidence 678999999999999999999999999999999999998888 256677788999999998887644
No 101
>PTZ00489 glutamate 5-kinase; Provisional
Probab=98.12 E-value=1.5e-05 Score=76.34 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=74.4
Q ss_pred cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCC------Ccc---cccCCHHHHHHHHHHhhhhhHHHHhHHHHhh
Q 017739 22 CAFANFSTYEVATACALAIEADKLICIIDGP-ILDES------GHL---IRFLTLQEADSLIRQRVKQSEIAANYVKAVA 91 (366)
Q Consensus 22 ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~------g~l---~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~ 91 (366)
.|..|-+.|.+|..+|..|+||+||++||.+ +.+.+ .++ ++.++..+..... ..
T Consensus 142 ~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~---~~------------- 205 (264)
T PTZ00489 142 HELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEA---TP------------- 205 (264)
T ss_pred ceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhc---Cc-------------
Confidence 4888889999999999999999999999987 44332 333 5666655442210 00
Q ss_pred ccccccccCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcC
Q 017739 92 EEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRG 171 (366)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~G 171 (366)
. .. .+ ..+|.++|.+|..|.+.|
T Consensus 206 --~---------------------------------~~--~~--------------------tGGM~~Kl~aa~~a~~~G 228 (264)
T PTZ00489 206 --N---------------------------------NR--FA--------------------TGGIVTKLQAAQFLLERG 228 (264)
T ss_pred --C---------------------------------CC--cc--------------------cCChHHHHHHHHHHHHCC
Confidence 0 00 11 013899999999999999
Q ss_pred CCeEEecccccCchhhhhhhccc-Cccceeec
Q 017739 172 VQRVHLLDGTIGGVLLLELFKRD-GMGTMVAS 202 (366)
Q Consensus 172 V~rvhlvd~~~~g~ll~Elft~~-G~GTmI~~ 202 (366)
++ +.|++++.++.+..-+.... ..||.+..
T Consensus 229 i~-v~I~~g~~~~~i~~~l~g~~~~~GT~~~~ 259 (264)
T PTZ00489 229 GK-MYLSSGFHLEKARDFLIGGSHEIGTLFYP 259 (264)
T ss_pred CC-EEEEeCCCchHHHHHHcCCCCCCceEEee
Confidence 95 89999999987764443222 26898744
No 102
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=98.07 E-value=1.8e-05 Score=73.62 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=51.1
Q ss_pred eccccCCCccc--cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHH
Q 017739 11 SVNVDFESLIL--CAFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 11 ~~~~~~~~~~~--ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l 73 (366)
...++.+.+|+ |.+-++++|..|..+|.+|+||+|+++||.+ +.+ .++++++.++.++++++.
T Consensus 97 ~~~l~~g~vpv~~G~~~~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~ 168 (221)
T cd04253 97 LEAMFTGKIVVMGGTEPGQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIV 168 (221)
T ss_pred HHHHHcCCeEEEECCCCCCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHc
Confidence 34566777777 6555889999999999999999999999987 432 357899999988877775
No 103
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=98.05 E-value=1.4e-05 Score=75.20 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred ccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHH
Q 017739 14 VDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 14 ~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l 73 (366)
++.+.+|+ |++.|+ ++|.+|+.+|.+|+||+|+++||.+ +.+ ++.++++.++.+||++|.
T Consensus 123 l~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~ 202 (239)
T cd04261 123 LEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMA 202 (239)
T ss_pred HHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHH
Confidence 45666776 689999 9999999999999999999999998 443 257899999999999986
No 104
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=98.04 E-value=1.5e-05 Score=76.32 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=41.9
Q ss_pred ccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHH
Q 017739 23 AFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSL 72 (366)
Q Consensus 23 e~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~ 72 (366)
+..|.|+|.+|..+|.+|+||+|+++||.+ +.+ .++++++.++..+++++
T Consensus 157 ~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~ 213 (262)
T cd04255 157 RIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKK 213 (262)
T ss_pred cCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHH
Confidence 367999999999999999999999999987 443 36889999997665544
No 105
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=98.03 E-value=1.5e-05 Score=74.97 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=52.1
Q ss_pred ccccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHH
Q 017739 12 VNVDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADS 71 (366)
Q Consensus 12 ~~~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~ 71 (366)
..++.+.+|+ |++.|+ ++|.+|+.+|.+|+||+|+++||.+ +.+ .+.++++.|+.+|+++
T Consensus 121 ~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~ 200 (239)
T cd04246 121 EALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLE 200 (239)
T ss_pred HHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHH
Confidence 3455667777 578888 8999999999999999999999998 443 3578999999999999
Q ss_pred HH
Q 017739 72 LI 73 (366)
Q Consensus 72 ~l 73 (366)
++
T Consensus 201 l~ 202 (239)
T cd04246 201 MA 202 (239)
T ss_pred HH
Confidence 86
No 106
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=98.02 E-value=1.8e-05 Score=74.77 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=53.4
Q ss_pred ccccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHH
Q 017739 12 VNVDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADS 71 (366)
Q Consensus 12 ~~~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~ 71 (366)
.-++.+.+|+ |++.|+ ++|.+|+.+|.+|+||+|+++||.+ +.+ .++++++.|+.+|+++
T Consensus 126 ~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~ 205 (244)
T cd04260 126 SALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQ 205 (244)
T ss_pred HHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHH
Confidence 3455666666 689999 4999999999999999999999998 443 3578999999999999
Q ss_pred HHHH
Q 017739 72 LIRQ 75 (366)
Q Consensus 72 ~l~~ 75 (366)
|+..
T Consensus 206 l~~~ 209 (244)
T cd04260 206 MAHQ 209 (244)
T ss_pred HHHc
Confidence 9743
No 107
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=97.91 E-value=4e-05 Score=83.04 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=77.8
Q ss_pred ccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC-----CCCcccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhccccccc
Q 017739 25 ANFSTYEVATACALAIEADKLICIIDGP-ILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCF 98 (366)
Q Consensus 25 ~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~-----~~g~l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (366)
+|+|.|.+|..+|.+|+||+||++||.+ +.+ .++++++.++..+.+..+....
T Consensus 165 ~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~--------------------- 223 (715)
T TIGR01092 165 IFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGT--------------------- 223 (715)
T ss_pred eecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCc---------------------
Confidence 4899999999999999999999999998 443 3478888888655542221100
Q ss_pred cCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCeEEec
Q 017739 99 GHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLL 178 (366)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~rvhlv 178 (366)
......| +|.++|.+|..|.+.|++ ++|.
T Consensus 224 ----------------------------~~~~~tG----------------------GM~~Kl~aa~~a~~~gi~-v~I~ 252 (715)
T TIGR01092 224 ----------------------------KSRLGRG----------------------GMTAKVKAAVWAAYGGTP-VIIA 252 (715)
T ss_pred ----------------------------ccccCCC----------------------CchHHHHHHHHHHHCCCe-EEEe
Confidence 0000011 388899999999999996 9999
Q ss_pred ccccCchhhhhhhcccCccceeeccc
Q 017739 179 DGTIGGVLLLELFKRDGMGTMVASDL 204 (366)
Q Consensus 179 d~~~~g~ll~Elft~~G~GTmI~~~~ 204 (366)
++..++.+. .++.....||.+..+.
T Consensus 253 ~g~~~~~l~-~~l~g~~~GT~~~~~~ 277 (715)
T TIGR01092 253 SGTAPKNIT-KVVEGKKVGTLFHEDA 277 (715)
T ss_pred CCCCcchHH-HHhcCCCCceEecccc
Confidence 998887654 5566667899886553
No 108
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=97.88 E-value=6.1e-05 Score=81.58 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=79.2
Q ss_pred ccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC-----CCCcccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhccccccc
Q 017739 25 ANFSTYEVATACALAIEADKLICIIDGP-ILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCF 98 (366)
Q Consensus 25 ~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~-----~~g~l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (366)
.|.+.|.+|..+|.+|+||+||++||.+ +.+ .++++++.++..+.+..+.... .
T Consensus 173 ~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~----------------~---- 232 (718)
T PLN02418 173 IFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGE----------------K---- 232 (718)
T ss_pred eecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhccc----------------c----
Confidence 4668999999999999999999999987 443 2457788777665554331100 0
Q ss_pred cCCCCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCeEEec
Q 017739 99 GHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLL 178 (366)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~rvhlv 178 (366)
.....| +|.+||.+|..|.+.|++ ++|+
T Consensus 233 -----------------------------s~~~tG----------------------GM~~Kl~Aa~~a~~~Gi~-v~I~ 260 (718)
T PLN02418 233 -----------------------------SRVGRG----------------------GMTAKVKAAVNAASAGIP-VVIT 260 (718)
T ss_pred -----------------------------cccCCC----------------------CcHHHHHHHHHHHHCCCc-EEEe
Confidence 000011 388999999999999986 8999
Q ss_pred ccccCchhhhhhhcccCccceeecccc
Q 017739 179 DGTIGGVLLLELFKRDGMGTMVASDLY 205 (366)
Q Consensus 179 d~~~~g~ll~Elft~~G~GTmI~~~~~ 205 (366)
+++.++.+. +++.....||.+..+..
T Consensus 261 ~g~~~~~l~-~~l~g~~~GT~i~~~~~ 286 (718)
T PLN02418 261 SGYALDNIR-KVLRGERVGTLFHQDAH 286 (718)
T ss_pred CCCCcchHH-HHhcCCCCceEeccccc
Confidence 999888654 56677789999977654
No 109
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.86 E-value=0.00031 Score=59.72 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcH
Q 017739 211 AKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQ 287 (366)
Q Consensus 211 at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i---~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGi 287 (366)
.+..|.-++.++| ...+.+.++..+ ..+|++.-|++++|-+.+.. ++..++|.+++|.+--|++|+
T Consensus 10 ls~Qd~iDL~KIw---------p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~--~~~~~~L~~l~VRevTRrRGV 78 (128)
T PF12568_consen 10 LSEQDRIDLAKIW---------PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTI--SGQQAELSDLCVREVTRRRGV 78 (128)
T ss_dssp --HHHHHHHHHH----------TTS----------SSEEEEEEEETTEEEEEEEEEE--ETTEEEEEEEEE-TT-SSSSH
T ss_pred CCHHHHHHHHHhC---------CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEE--cCcceEEeeEEEeeccccccH
Confidence 3445555555554 222334454444 47889999999999999985 457999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEcH--------HHHHHHHHCCCeEe
Q 017739 288 GDKLLDYIEKKAASLGLDMLFLLTT--------RTADWFKSRGFREC 326 (366)
Q Consensus 288 G~~LL~~l~~~Ar~~Gi~~l~l~tt--------~A~~fY~k~GF~~~ 326 (366)
|..|++.+.+.+. +++...+... ....|.+.+||...
T Consensus 79 G~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 79 GLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp HHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred HHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 9999999999884 4566555442 33588999999654
No 110
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.85 E-value=0.00034 Score=67.04 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=64.9
Q ss_pred CHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHH
Q 017739 236 TDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRT 314 (366)
Q Consensus 236 s~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A 314 (366)
+.+++.+. ...+++.++|+||+-|.-.... ++..+| .+.++|+|||+|+++.+-..++..|.++|+.-.+-.. ..+
T Consensus 157 s~e~Fl~~-G~Gf~i~~~~~iVs~~~s~~~~-~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S 233 (265)
T PF12746_consen 157 SYEDFLKN-GFGFCILHDGEIVSGCSSYFVY-ENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLAS 233 (265)
T ss_dssp SHHHHHHH---EEEEEETTEEEEEEEEEEEE-TTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHH
T ss_pred CHHHHHhc-CcEEEEEECCEEEEEEEEEEEE-CCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHH
Confidence 44444433 3567778899998755444333 367899 5999999999999999999999999999987754332 589
Q ss_pred HHHHHHCCCeEecee
Q 017739 315 ADWFKSRGFRECSIE 329 (366)
Q Consensus 315 ~~fY~k~GF~~~~~~ 329 (366)
.++-+|+||+.....
T Consensus 234 ~~lA~kLGf~~~~~Y 248 (265)
T PF12746_consen 234 IALAEKLGFHFDFEY 248 (265)
T ss_dssp HHHHHHCT--EEEEE
T ss_pred HHHHHHcCCccccee
Confidence 999999999987754
No 111
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.82 E-value=8.9e-05 Score=60.58 Aligned_cols=67 Identities=28% Similarity=0.364 Sum_probs=57.2
Q ss_pred cCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 244 LDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 244 i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
.+.++++..+|..+|.+..++. .++...|.+-.|.+++||||+|++|+..+++.|++.|.+.+=+..
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~-~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDR-GENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred CceEEEEecCCcEEEEEEEecC-CCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccch
Confidence 3578889999999999988853 347889999999999999999999999999999999986554433
No 112
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=97.76 E-value=8.8e-05 Score=69.30 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=47.2
Q ss_pred ccccCCCccc-----cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHH
Q 017739 12 VNVDFESLIL-----CAFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 12 ~~~~~~~~~~-----ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l 73 (366)
..++.+-+|+ |..+ .++|.+|+.+|.+|+||+|+++||.+ +.+ +++++++.++.+|+.++.
T Consensus 113 ~~l~~g~ipVi~g~~g~~~-~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~ 185 (229)
T cd04239 113 RHLEKGRIVIFGGGTGNPG-FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKG 185 (229)
T ss_pred HHHhCCCEEEEeCccCCCC-CCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHh
Confidence 3455666776 3333 58999999999999999999999987 443 247899999987777664
No 113
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.70 E-value=0.00056 Score=73.59 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=58.1
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEE---EcHHHHHHHHHCCCeEeceeccchHHHhhhcCCCCce
Q 017739 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL---LTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSK 346 (366)
Q Consensus 270 ~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l---~tt~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~s~ 346 (366)
...|-.|||||++|++|+|+++|+.+.++|+ .|+..+-+ .|..-.+|+.|+||.++....--... ..-.|.
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pVhls~~rn~~-----SGeys~ 604 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPVHLSPTRNAS-----SGEYTA 604 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEEEecCccCcC-----CCceeE
Confidence 3468899999999999999999999999997 45665533 33577999999999999876422211 113456
Q ss_pred eEEEecC
Q 017739 347 YYMKKLL 353 (366)
Q Consensus 347 vl~k~l~ 353 (366)
+++|.|.
T Consensus 605 i~lkpLs 611 (758)
T COG1444 605 IVLKPLS 611 (758)
T ss_pred EEEecCC
Confidence 7777664
No 114
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=97.69 E-value=9.3e-05 Score=69.12 Aligned_cols=62 Identities=21% Similarity=0.127 Sum_probs=50.0
Q ss_pred cccC-CCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHH
Q 017739 13 NVDF-ESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADS 71 (366)
Q Consensus 13 ~~~~-~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~ 71 (366)
.++. +.+|+ |++.|+ ++|.+|+.+|.+|+||+|+++||.+ +.+ .+.++++.++.+|+++
T Consensus 108 ~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~ 187 (227)
T cd04234 108 LLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALE 187 (227)
T ss_pred HHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHH
Confidence 3455 66666 567666 5999999999999999999999998 443 2568999999999999
Q ss_pred HHH
Q 017739 72 LIR 74 (366)
Q Consensus 72 ~l~ 74 (366)
|..
T Consensus 188 l~~ 190 (227)
T cd04234 188 LAY 190 (227)
T ss_pred HHh
Confidence 863
No 115
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.61 E-value=8.3e-05 Score=72.83 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=70.4
Q ss_pred CcEEEEEECCeEEEEEEEeeec---CC---CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHH
Q 017739 245 DSFYVVEREGQIIACAALFPFF---KE---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWF 318 (366)
Q Consensus 245 ~~~~V~e~dg~IVG~a~l~~~~---d~---~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY 318 (366)
..++|++.+.++++.....++. .+ .++.|+.+++.|.|||+|.-++||.+.++..+++|+...+ +..-+..+|
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~-L~P~s~~iY 117 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSA-LHPFSGGIY 117 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEE-eccCchhhH
Confidence 4789999999999988887632 22 5678999999999999999999999999999999986654 445688999
Q ss_pred HHCCCeEece
Q 017739 319 KSRGFRECSI 328 (366)
Q Consensus 319 ~k~GF~~~~~ 328 (366)
+|.||+..+.
T Consensus 118 rKfGye~asn 127 (389)
T COG4552 118 RKFGYEYASN 127 (389)
T ss_pred hhccccccce
Confidence 9999998873
No 116
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.48 E-value=0.00048 Score=68.00 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=75.1
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc------------------CcEEEEEE--CCeEEEEEEEeee
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------------------DSFYVVER--EGQIIACAALFPF 265 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i------------------~~~~V~e~--dg~IVG~a~l~~~ 265 (366)
..|||++.+|+++|.+|-...-..-...|.+++.+.+.+ .+++|+|+ .|+|+||+++...
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a~ 81 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEAA 81 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEESS
T ss_pred eEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEec
Confidence 479999999999999997654222223444455444332 15678885 5999999999520
Q ss_pred -----------------------------------cCCCeEEEEEEEECccccCCcHHHHHHHHHHH---HHHHCCCCEE
Q 017739 266 -----------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEK---KAASLGLDML 307 (366)
Q Consensus 266 -----------------------------------~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~---~Ar~~Gi~~l 307 (366)
.-.+..||+.++++|+||+.|.|+.|-+.=.- .-++.--+++
T Consensus 82 vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~v 161 (342)
T PF04958_consen 82 VGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRV 161 (342)
T ss_dssp TTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEE
T ss_pred cCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchhe
Confidence 01367899999999999999999888654322 2244445666
Q ss_pred EEEc------HHHHHHHHHCCCeEeceeccchHHHhhhcCCCCceeEEEecCCC
Q 017739 308 FLLT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPD 355 (366)
Q Consensus 308 ~l~t------t~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~s~vl~k~l~~~ 355 (366)
...- .....||+..|=.-.+.+.-... |-..-.+|-||..|.|.
T Consensus 162 iAElrG~~De~G~SPFWdalG~~FF~mdF~eAD----~Lsg~~~k~FIaeLMP~ 211 (342)
T PF04958_consen 162 IAELRGVSDEDGRSPFWDALGRHFFDMDFQEAD----YLSGIGNKQFIAELMPR 211 (342)
T ss_dssp EEE--B---TT---HHHHHTGGGTS---HHHHH----HHHHH------------
T ss_pred eeeccCCcCCCCCCchHHHhhccccCCCHHHHH----HHHcCCcchHHHHhCCC
Confidence 6655 35678888887555544432222 11122556677777664
No 117
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=97.46 E-value=0.00034 Score=55.96 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=61.5
Q ss_pred EEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHHCCCe
Q 017739 249 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFR 324 (366)
Q Consensus 249 V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t----t~A~~fY~k~GF~ 324 (366)
+..-+|++|..+... ..+++..-++.|+|||||+.+.++....+.+.++|+. ++..+ ..+.+..+++||.
T Consensus 3 llgpeG~PVSW~lmd-----qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 3 LLGPEGNPVSWSLMD-----QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred ccCCCCCEeEEEEec-----ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCe
Confidence 445678899888776 5678999999999999999999999999999999984 45555 4789999999999
Q ss_pred Ee
Q 017739 325 EC 326 (366)
Q Consensus 325 ~~ 326 (366)
..
T Consensus 77 ~~ 78 (89)
T PF08444_consen 77 FM 78 (89)
T ss_pred ec
Confidence 74
No 118
>PRK00358 pyrH uridylate kinase; Provisional
Probab=97.45 E-value=0.00052 Score=64.12 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=44.7
Q ss_pred ccccCCCccc----cccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHH
Q 017739 12 VNVDFESLIL----CAFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEA 69 (366)
Q Consensus 12 ~~~~~~~~~~----ge~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a 69 (366)
..++.+-+|+ ++.-..++|.+|+.+|.+|+||+|+++||.+ +.+ .++++++.++.+|+
T Consensus 115 ~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~ 183 (231)
T PRK00358 115 RHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEV 183 (231)
T ss_pred HHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHH
Confidence 3456677777 2222368999999999999999999999987 432 35889999987663
No 119
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.44 E-value=0.00024 Score=54.15 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=40.5
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCC
Q 017739 276 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGF 323 (366)
Q Consensus 276 laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF 323 (366)
++|+|+|||+|+|+.|++.++++++..|+. ....+..+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce----ehHHHHHHHHhcCC
Confidence 999999999999999999999999998876 45678999999999
No 120
>PRK08210 aspartate kinase I; Reviewed
Probab=97.31 E-value=0.00025 Score=71.77 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=54.8
Q ss_pred ccccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHH
Q 017739 12 VNVDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADS 71 (366)
Q Consensus 12 ~~~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~ 71 (366)
..++.+.+|+ |++.|+ ++|..|+.+|.+|+||+++++||.+ +.+ .+++++++|+.+||++
T Consensus 128 ~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~ 207 (403)
T PRK08210 128 EALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQ 207 (403)
T ss_pred HHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHH
Confidence 3455666776 788888 6999999999999999999999998 443 3578999999999999
Q ss_pred HHHHhh
Q 017739 72 LIRQRV 77 (366)
Q Consensus 72 ~l~~~~ 77 (366)
|.....
T Consensus 208 l~~~G~ 213 (403)
T PRK08210 208 MAYQGA 213 (403)
T ss_pred HHHCCc
Confidence 986543
No 121
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.28 E-value=0.0034 Score=59.31 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=82.2
Q ss_pred eEEeCCc-cCHHHHHHHHHHHH--HcCcCcc------CCHHHHHhhcCcEEEEEE-CCeEEEEEEEeeec----------
Q 017739 207 GTRTAKV-TDLSGIKQIIQPLV--ESGALVR------RTDEELLKALDSFYVVER-EGQIIACAALFPFF---------- 266 (366)
Q Consensus 207 ~IR~at~-~Di~~I~~Li~~~~--~~~~~~~------rs~e~l~~~i~~~~V~e~-dg~IVG~a~l~~~~---------- 266 (366)
.++.+.. +++.++..+-+... +.++..+ ...+++...-.++++... +|++|||+.+.+..
T Consensus 9 ~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~ 88 (241)
T TIGR03694 9 EIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPF 88 (241)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccH
Confidence 3444443 34677777776643 3344321 223334332234555443 58999999998630
Q ss_pred -------------------CCCeEEEEEEEECccccCC--------c--------------------HHHHHHHHHHHHH
Q 017739 267 -------------------KEKCGEVAAIGVSPECRGQ--------G--------------------QGDKLLDYIEKKA 299 (366)
Q Consensus 267 -------------------d~~~~eL~~laV~P~yRGq--------G--------------------iG~~LL~~l~~~A 299 (366)
.....|+..++|+|+||++ | +...|+..+.+.|
T Consensus 89 e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a 168 (241)
T TIGR03694 89 EKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALS 168 (241)
T ss_pred HHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHH
Confidence 1257899999999999974 2 4567999999999
Q ss_pred HHCCCCEEEEEcH-HHHHHHHHCCCeEec
Q 017739 300 ASLGLDMLFLLTT-RTADWFKSRGFRECS 327 (366)
Q Consensus 300 r~~Gi~~l~l~tt-~A~~fY~k~GF~~~~ 327 (366)
.+.|++.++..++ .-.+++++.|+....
T Consensus 169 ~~~Gi~~~~~v~~~~l~r~l~r~G~~~~~ 197 (241)
T TIGR03694 169 SANGITHWYAIMEPRLARLLSRFGIQFRQ 197 (241)
T ss_pred HHCCCcEEEEEeCHHHHHHHHHhCCceEE
Confidence 9999999998884 667899999987643
No 122
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.23 E-value=0.0077 Score=50.33 Aligned_cols=99 Identities=18% Similarity=0.069 Sum_probs=72.4
Q ss_pred CCccCHHHHHHHHHHHHHcC---cCccCCHHHHHhh---c-----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEC
Q 017739 211 AKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKA---L-----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 279 (366)
Q Consensus 211 at~~Di~~I~~Li~~~~~~~---~~~~rs~e~l~~~---i-----~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~ 279 (366)
...+|++.+.+++....... ...+.+.+.+..- . -.++++..+|++||+...... ++..+.....++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~--~~~~~~~~~g~~ 103 (142)
T PF13480_consen 26 TDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRH--GGTLYYWYGGYD 103 (142)
T ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEE--CCEEEEEEEEEC
Confidence 35667777888876653332 2234444433332 2 156777889999998877643 357777788999
Q ss_pred ccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 280 PECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 280 P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
|+|++.+.|..|+..++++|.+.|++.+-+..
T Consensus 104 ~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 104 PEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred HhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 99999999999999999999999998887765
No 123
>PRK10456 arginine succinyltransferase; Provisional
Probab=97.21 E-value=0.0012 Score=65.22 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=62.8
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEeeec-
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPFF- 266 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i----------------~~~~V~e~--dg~IVG~a~l~~~~- 266 (366)
+.|||++.+|+++|.+|-...-..-...|..++.+.+.| .+++|+|+ .|+|||++++....
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 479999999999999996543211123455555555443 15678875 58999999985210
Q ss_pred ----------------------------------CCCeEEEEEEEECccccCCcHHHHHHH
Q 017739 267 ----------------------------------KEKCGEVAAIGVSPECRGQGQGDKLLD 293 (366)
Q Consensus 267 ----------------------------------d~~~~eL~~laV~P~yRGqGiG~~LL~ 293 (366)
-.+..||+.++++|+||+.|.|+.|=+
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr 142 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSK 142 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHH
Confidence 026778999999999999998887654
No 124
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=97.18 E-value=0.00031 Score=61.39 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=80.7
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcCc-cCCHHHHHhh--cC-------------cEEEEEECCeEEEEEEEeeecC--
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGALV-RRTDEELLKA--LD-------------SFYVVEREGQIIACAALFPFFK-- 267 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~~-~rs~e~l~~~--i~-------------~~~V~e~dg~IVG~a~l~~~~d-- 267 (366)
..||+..++|...+..| +..+|+. .+.-.++.++ ++ ++. -...+.+||.+.-..++.
T Consensus 12 ~~irp~i~e~~q~~~~L----ea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~-~~~~~tLIghIigs~~~~E~ 86 (190)
T KOG4144|consen 12 PRIRPGIPESCQRRHTL----EASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFL-TLCEGTLIGHIIGSLWDKER 86 (190)
T ss_pred ccCCCCChHHHHHHhcc----ccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhh-hhccccceehhhcccCcchh
Confidence 46888888888877777 5555542 1221222111 11 111 112578888876654332
Q ss_pred ------------CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC-CCEEEEEc-HHHHHHHHHCCCeEeceeccc
Q 017739 268 ------------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT-TRTADWFKSRGFRECSIEMIP 332 (366)
Q Consensus 268 ------------~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G-i~~l~l~t-t~A~~fY~k~GF~~~~~~~Lp 332 (366)
+....|..++|+|+||.+|+|..|+..-++..-++- ..++.+.+ ..-..||+++||+.++.....
T Consensus 87 lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~vgp~~~~ 165 (190)
T KOG4144|consen 87 LTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKAVGPCAIT 165 (190)
T ss_pred hhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCceeecccccc
Confidence 345789999999999999999999988776665443 34555555 467899999999999975443
No 125
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=97.17 E-value=0.0016 Score=63.54 Aligned_cols=53 Identities=25% Similarity=0.222 Sum_probs=47.3
Q ss_pred cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHHH
Q 017739 22 CAFANF---STYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 22 ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l~ 74 (366)
|++.|+ ++|..|+.+|.+|+||+|+++||.+ +. | .+.++++.|+.+||++|..
T Consensus 199 g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~ 261 (298)
T cd04244 199 GAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAY 261 (298)
T ss_pred CCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHh
Confidence 788899 9999999999999999999999988 43 2 2578999999999999974
No 126
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.09 E-value=0.0055 Score=55.55 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=78.7
Q ss_pred cCHHHHHHHHHHHHHc--CcCccC----CHHHHHhhcCcEEEEEECCeEEEEEEEeeecC--------------------
Q 017739 214 TDLSGIKQIIQPLVES--GALVRR----TDEELLKALDSFYVVEREGQIIACAALFPFFK-------------------- 267 (366)
Q Consensus 214 ~Di~~I~~Li~~~~~~--~~~~~r----s~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d-------------------- 267 (366)
++++++..+-+..... ++.++. ..+++...-..+.+...+|+++||+.+.|...
T Consensus 8 ~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~ 87 (182)
T PF00765_consen 8 RLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRS 87 (182)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCC
Confidence 3455666665554332 333222 24444444345667778899999999987322
Q ss_pred CCeEEEEEEEECccccC------CcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 017739 268 EKCGEVAAIGVSPECRG------QGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 268 ~~~~eL~~laV~P~yRG------qGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~~ 328 (366)
.+..|+..++|+|+.++ .-+...|+..+.++|.++|++.+...+ ....++|++.||...-.
T Consensus 88 ~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 88 PDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRRAGWPVRRL 155 (182)
T ss_dssp TTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEES
T ss_pred CcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHHcCCceEEC
Confidence 37899999999998542 246789999999999999999998777 57789999999997654
No 127
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=97.07 E-value=0.0023 Score=60.04 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHcCCceEEEEeCCc-ccCCCCc-ccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhccccccccCCCCC
Q 017739 27 FSTYEVATACALAIEADKLICIIDGP-ILDESGH-LIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSI 104 (366)
Q Consensus 27 ~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~g~-l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (366)
++-||++.++|.+|++|+++|++|.+ +.|.++. +|....+++.+.+..-. ++.
T Consensus 147 iSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~-------------------------gs~ 201 (252)
T COG1608 147 ISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALG-------------------------GSG 201 (252)
T ss_pred EeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhc-------------------------CcC
Confidence 57799999999999999999999998 6777764 88777777777763110 001
Q ss_pred CccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCeEEecccccCc
Q 017739 105 GSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGG 184 (366)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~rvhlvd~~~~g 184 (366)
+.+ . +| ||..+|+++.+..+.+.+ |.++++..++
T Consensus 202 ~~D----------------------V-TG----------------------Gi~~Kl~~~~~~~~~~~~-vyi~ng~~~~ 235 (252)
T COG1608 202 GTD----------------------V-TG----------------------GIAKKLEALLEIARYGKE-VYIFNGNKPE 235 (252)
T ss_pred ccc----------------------c-hh----------------------hHHHHHHHHHHHHhcCce-EEEECCCCHH
Confidence 000 0 12 388899999999999998 9999999998
Q ss_pred hhhhhhhcccCccceee
Q 017739 185 VLLLELFKRDGMGTMVA 201 (366)
Q Consensus 185 ~ll~Elft~~G~GTmI~ 201 (366)
.+-+-| .-..+||.|.
T Consensus 236 ni~~~l-~G~~vGT~I~ 251 (252)
T COG1608 236 NIYRAL-RGENVGTRID 251 (252)
T ss_pred HHHHHh-cCCCCceEec
Confidence 887555 3455688763
No 128
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=97.07 E-value=0.0018 Score=66.40 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=46.0
Q ss_pred cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHHH
Q 017739 22 CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 22 ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l~ 74 (366)
|++.++ ++|.+|+.+|.+|+||+|+++||.+ +.+ .+.++++.++.+||++|..
T Consensus 183 g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~ 245 (441)
T TIGR00657 183 GETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELAS 245 (441)
T ss_pred CCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHh
Confidence 678777 7999999999999999999999988 443 2468999999999999874
No 129
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.98 E-value=0.0024 Score=62.88 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=61.2
Q ss_pred EEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEeee----
Q 017739 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF---- 265 (366)
Q Consensus 208 IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i----------------~~~~V~e~--dg~IVG~a~l~~~---- 265 (366)
|||++.+|+++|.+|-...-..-...|..++.+.+.| .+++|+|+ .|+|+|++++...
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999996543211123455555555443 15678876 5899999998521
Q ss_pred -------------------------------cCCCeEEEEEEEECccccCCcHHHHHHH
Q 017739 266 -------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLD 293 (366)
Q Consensus 266 -------------------------------~d~~~~eL~~laV~P~yRGqGiG~~LL~ 293 (366)
.-.+..||+.++++|+||+.|.|+.|=+
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr 140 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSK 140 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHH
Confidence 0026778999999999999998887654
No 130
>PRK06635 aspartate kinase; Reviewed
Probab=96.91 E-value=0.0011 Score=66.99 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=52.4
Q ss_pred ccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHH
Q 017739 14 VDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 14 ~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l 73 (366)
++.+.+|+ |++.|+ ++|.+|+.+|.+|+||+|+++||.+ +.+ .+.++++.++.+||++|.
T Consensus 125 l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~ 204 (404)
T PRK06635 125 LDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELA 204 (404)
T ss_pred HhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHH
Confidence 44566776 688899 9999999999999999999999998 443 356899999999999997
Q ss_pred HH
Q 017739 74 RQ 75 (366)
Q Consensus 74 ~~ 75 (366)
..
T Consensus 205 ~~ 206 (404)
T PRK06635 205 SL 206 (404)
T ss_pred Hc
Confidence 44
No 131
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.90 E-value=0.0026 Score=62.54 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=59.8
Q ss_pred EEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc-----------------CcEEEEEE--CCeEEEEEEEeeec--
Q 017739 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-----------------DSFYVVER--EGQIIACAALFPFF-- 266 (366)
Q Consensus 208 IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i-----------------~~~~V~e~--dg~IVG~a~l~~~~-- 266 (366)
|||++.+|+++|.+|-...-..-...|..++.+.+.| .+++|+|+ .|+|+|++++....
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 7999999999999996443211122344444444332 25678875 58999999985310
Q ss_pred ---------------------------------CCCeEEEEEEEECccccCCcHHHHHHH
Q 017739 267 ---------------------------------KEKCGEVAAIGVSPECRGQGQGDKLLD 293 (366)
Q Consensus 267 ---------------------------------d~~~~eL~~laV~P~yRGqGiG~~LL~ 293 (366)
-.+..||+.++++|+||+.|.|+.|=+
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr 141 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSR 141 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHH
Confidence 026778999999999999998887654
No 132
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.85 E-value=0.0032 Score=61.94 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=59.5
Q ss_pred EEeCCccCHHHHHHHHHHHHHcCcCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEeee----
Q 017739 208 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF---- 265 (366)
Q Consensus 208 IR~at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i----------------~~~~V~e~--dg~IVG~a~l~~~---- 265 (366)
|||++.+|+++|++|-...-..-...|..++.+.+.| .+++|+|+ .|+|+|++++...
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999996543111122344444443322 25678875 5899999998521
Q ss_pred ---c----------------------------CCCeEEEEEEEECccccCCcHHHHHHH
Q 017739 266 ---F----------------------------KEKCGEVAAIGVSPECRGQGQGDKLLD 293 (366)
Q Consensus 266 ---~----------------------------d~~~~eL~~laV~P~yRGqGiG~~LL~ 293 (366)
. -.+..||+.++++|+||+.|.|+.|=+
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr 140 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSR 140 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHH
Confidence 0 026778999999999999998887754
No 133
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=96.81 E-value=0.0016 Score=65.82 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=54.0
Q ss_pred ccccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHH
Q 017739 12 VNVDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADS 71 (366)
Q Consensus 12 ~~~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~ 71 (366)
.-++.+.+|+ |++.|+ ++|..|+.+|.+|+||+|+++||.+ +.+ .+.++++.|+..||++
T Consensus 124 ~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~ 203 (401)
T TIGR00656 124 PLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALE 203 (401)
T ss_pred HHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHH
Confidence 3445666776 678888 5999999999999999999999987 443 3567999999999999
Q ss_pred HHHHhh
Q 017739 72 LIRQRV 77 (366)
Q Consensus 72 ~l~~~~ 77 (366)
|.....
T Consensus 204 l~~~G~ 209 (401)
T TIGR00656 204 LATFGA 209 (401)
T ss_pred HHHcCC
Confidence 986543
No 134
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.79 E-value=0.022 Score=52.72 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=77.2
Q ss_pred cCHHHHHHHHHHHHH--cCcCccC----CHHHHHhhcCcEEEEE-ECCeEEEEEEEeeec--------------------
Q 017739 214 TDLSGIKQIIQPLVE--SGALVRR----TDEELLKALDSFYVVE-REGQIIACAALFPFF-------------------- 266 (366)
Q Consensus 214 ~Di~~I~~Li~~~~~--~~~~~~r----s~e~l~~~i~~~~V~e-~dg~IVG~a~l~~~~-------------------- 266 (366)
+++.++..|-+...- .++..+. ..+++...-.++++.. .+|+++||+.+.+..
T Consensus 16 ~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~ 95 (207)
T PRK13834 16 SLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNA 95 (207)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCC
Confidence 445556666555433 2333222 2333433333555544 568999999997531
Q ss_pred CCCeEEEEEEEECccccCC---c----HHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEec
Q 017739 267 KEKCGEVAAIGVSPECRGQ---G----QGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECS 327 (366)
Q Consensus 267 d~~~~eL~~laV~P~yRGq---G----iG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k~GF~~~~ 327 (366)
..+..|+..++|+|+++.. + +...|+..+.+++...|++.++..++ .-.+.+++.||...-
T Consensus 96 ~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 96 HPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILARAGWPMQR 164 (207)
T ss_pred CCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHcCCCeEE
Confidence 1368899999999986422 2 55789999999999999999988874 567899999987643
No 135
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=96.79 E-value=0.0043 Score=58.10 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=44.1
Q ss_pred eccccCCCccc--cc--cccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCC------CCcccccCCHHHH
Q 017739 11 SVNVDFESLIL--CA--FANFSTYEVATACALAIEADKLICIIDGP-ILDE------SGHLIRFLTLQEA 69 (366)
Q Consensus 11 ~~~~~~~~~~~--ge--~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~------~g~l~~~l~~~~a 69 (366)
...++.+.+|+ |+ .-.+++|.+|+.+|.+|+||+|+++||.+ +.+. +.++++.++..|+
T Consensus 114 ~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~ 183 (231)
T cd04254 114 IRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEV 183 (231)
T ss_pred HHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHH
Confidence 33456666666 22 23558999999999999999999999997 4432 4578888887665
No 136
>PRK06291 aspartate kinase; Provisional
Probab=96.69 E-value=0.0052 Score=63.49 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=51.3
Q ss_pred ccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHH
Q 017739 14 VDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 14 ~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l 73 (366)
++.+.+|+ |++.|+ ++|..|+.+|.+|+||+|+++||.+ +. | .+.++++.|+..||.+|.
T Consensus 185 l~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~ 264 (465)
T PRK06291 185 LKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELS 264 (465)
T ss_pred hhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHH
Confidence 45666766 788999 9999999999999999999999998 43 2 357899999999999985
No 137
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=96.63 E-value=0.0089 Score=56.07 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=43.2
Q ss_pred ccCCCccc----cccccCCHHHHHHHHHHHcCCceEEEEeC-Cc-ccC------CCCcccccCCHHHHH
Q 017739 14 VDFESLIL----CAFANFSTYEVATACALAIEADKLICIID-GP-ILD------ESGHLIRFLTLQEAD 70 (366)
Q Consensus 14 ~~~~~~~~----ge~~N~~~~~vA~~~A~~l~AdKli~l~~-~~-~~~------~~g~l~~~l~~~~a~ 70 (366)
++.|-+|+ +++-.+++|.+|+.+|..|+||+|+++|| .+ +.+ ++.++++.++..|+.
T Consensus 118 l~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~ 186 (233)
T TIGR02075 118 LEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEAL 186 (233)
T ss_pred HHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHH
Confidence 45555555 12456899999999999999999999999 76 433 345788888877754
No 138
>PRK14558 pyrH uridylate kinase; Provisional
Probab=96.55 E-value=0.0068 Score=56.70 Aligned_cols=62 Identities=24% Similarity=0.235 Sum_probs=46.1
Q ss_pred eccccCCCccc--c--ccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHH
Q 017739 11 SVNVDFESLIL--C--AFANFSTYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSL 72 (366)
Q Consensus 11 ~~~~~~~~~~~--g--e~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~ 72 (366)
...++.+-+|+ | +.-.+++|..|+.+|..|+||.|+++||.+ +.+ ++.++++.++.+|+.++
T Consensus 112 ~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~ 184 (231)
T PRK14558 112 ELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM 184 (231)
T ss_pred HHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc
Confidence 34455666666 2 233568999999999999999999999987 433 34789999987666543
No 139
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.059 Score=47.13 Aligned_cols=124 Identities=21% Similarity=0.176 Sum_probs=80.9
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCc--CccCC-HHHHHhhc------C--cEEEEEEC---------CeEEEEEEEeee
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGA--LVRRT-DEELLKAL------D--SFYVVERE---------GQIIACAALFPF 265 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~--~~~rs-~e~l~~~i------~--~~~V~e~d---------g~IVG~a~l~~~ 265 (366)
..+-|.++..++...+++..-+-... ..+.+ .++++.+- + .|+|++.+ ...||=+-+.-.
T Consensus 14 vILVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt 93 (185)
T KOG4135|consen 14 VILVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLT 93 (185)
T ss_pred EEEeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEe
Confidence 35778888888888888765432222 12322 12222211 1 56666221 235665555432
Q ss_pred cCC---------CeEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHHCCCeEecee
Q 017739 266 FKE---------KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 266 ~d~---------~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t----t~A~~fY~k~GF~~~~~~ 329 (366)
.+. ..+++.-+.-.|..||+|+|+..+..++.++.. .++..-++-. .++.++|+|++|..+...
T Consensus 94 ~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 94 TSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred cCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 221 356777677789999999999999999999965 4666666655 489999999999988654
No 140
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=96.40 E-value=0.03 Score=50.70 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=54.7
Q ss_pred EEEEEC-CeEEEEEEEeeec------CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHH
Q 017739 248 YVVERE-GQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKS 320 (366)
Q Consensus 248 ~V~e~d-g~IVG~a~l~~~~------d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k 320 (366)
+++..+ .++|+.+.+..+. ++....++.++++|+|||+|+++.+-+.+.+..+..+-..+...+..+.++|.+
T Consensus 49 ~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~~~N~~~~~~~~~~~~w~k 128 (181)
T PF06852_consen 49 LTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSVDDNSVAQGNVKMSNFWHK 128 (181)
T ss_pred EEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccCCCceeeecCHHHHHHHHH
Confidence 334443 5688888776432 345788999999999999999964444444555444444444444677778877
Q ss_pred -CCCeEece
Q 017739 321 -RGFRECSI 328 (366)
Q Consensus 321 -~GF~~~~~ 328 (366)
+||...+.
T Consensus 129 ~~G~~~~~h 137 (181)
T PF06852_consen 129 MFGFDDYGH 137 (181)
T ss_pred HhCCCCCcc
Confidence 79887765
No 141
>PRK08841 aspartate kinase; Validated
Probab=96.30 E-value=0.005 Score=62.28 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=52.2
Q ss_pred cccCCCccc----------cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHH
Q 017739 13 NVDFESLIL----------CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSL 72 (366)
Q Consensus 13 ~~~~~~~~~----------ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~ 72 (366)
.++.+.+|+ |++.++ ++|..|+.+|.+|+||+|+++||.+ +.+ .+.++++.|+..||.+|
T Consensus 124 ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~el 203 (392)
T PRK08841 124 LLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAM 203 (392)
T ss_pred HHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHH
Confidence 345566666 688888 9999999999999999999999987 433 34689999999999998
Q ss_pred HHH
Q 017739 73 IRQ 75 (366)
Q Consensus 73 l~~ 75 (366)
...
T Consensus 204 a~~ 206 (392)
T PRK08841 204 ARK 206 (392)
T ss_pred Hhc
Confidence 743
No 142
>PRK14557 pyrH uridylate kinase; Provisional
Probab=96.28 E-value=0.014 Score=55.50 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=45.5
Q ss_pred eeccccCCCccc--c--ccccCCHHHHHHHHHHHcCCceEEEEe-CCc-ccC------CCCcccccCCHHHH
Q 017739 10 ISVNVDFESLIL--C--AFANFSTYEVATACALAIEADKLICII-DGP-ILD------ESGHLIRFLTLQEA 69 (366)
Q Consensus 10 ~~~~~~~~~~~~--g--e~~N~~~~~vA~~~A~~l~AdKli~l~-~~~-~~~------~~g~l~~~l~~~~a 69 (366)
+...++.|.+++ | -.-.+++|.+|+.+|..++||.|+++| |.+ +.| .+.++++.++..|+
T Consensus 118 ~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~ 189 (247)
T PRK14557 118 AVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDV 189 (247)
T ss_pred HHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhh
Confidence 444567777776 3 245789999999999999999999995 876 333 34689999986655
No 143
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.028 Score=54.08 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHcCCceEEEEeCCc-c-cC---CCCcccccCCHHHHHHHHHHhhhhhHHHHhHHHHhhccccccccCC
Q 017739 27 FSTYEVATACALAIEADKLICIIDGP-I-LD---ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHS 101 (366)
Q Consensus 27 ~~~~~vA~~~A~~l~AdKli~l~~~~-~-~~---~~g~l~~~l~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
++-|-.+.-+|..++||-||+|||.+ + ++ ++-+-++..+++|+++|+.+..
T Consensus 211 IDKDlasalLA~~i~AD~liILTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg~------------------------ 266 (312)
T COG0549 211 IDKDLASALLAEQIDADLLIILTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEGQ------------------------ 266 (312)
T ss_pred EccHHHHHHHHHHhcCCEEEEEeccchheecCCCccchhhcccCHHHHHHHHhcCC------------------------
Confidence 45677888899999999999999998 3 32 3446888899999999995421
Q ss_pred CCCCccccCCCCCcccccccccccCCCccCCCCCCcccccccccccchhhhhcccchHHHHHHHHHHhcCCCeEEecccc
Q 017739 102 DSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGT 181 (366)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~GV~rvhlvd~~ 181 (366)
|+.|+ |.+++.||+.-.+.+-.++.|.+-.
T Consensus 267 -----------------------------------------Fa~GS---------M~PKVeAai~Fv~~~gk~A~ItsLe 296 (312)
T COG0549 267 -----------------------------------------FAAGS---------MGPKVEAAISFVENTGKPAIITSLE 296 (312)
T ss_pred -----------------------------------------CCCCC---------ccHHHHHHHHHHHcCCCceEECcHH
Confidence 12222 8999999999999988888887654
Q ss_pred cCchhhhhhhcccCccceee
Q 017739 182 IGGVLLLELFKRDGMGTMVA 201 (366)
Q Consensus 182 ~~g~ll~Elft~~G~GTmI~ 201 (366)
.-.+.+ ....||.|.
T Consensus 297 ~~~~~l-----~g~~GT~I~ 311 (312)
T COG0549 297 NAEAAL-----EGKAGTVIV 311 (312)
T ss_pred HHHHHh-----ccCCCcEec
Confidence 433333 345677653
No 144
>PRK07431 aspartate kinase; Provisional
Probab=95.93 E-value=0.0097 Score=63.21 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHHHHh
Q 017739 28 STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l~~~ 76 (366)
++|..|+.+|.+|+||+|+++||.+ +.+ .+.++++.|+.+||++|....
T Consensus 154 gsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G 209 (587)
T PRK07431 154 GSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLG 209 (587)
T ss_pred chHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCC
Confidence 5899999999999999999999988 442 257899999999999997543
No 145
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.78 E-value=0.086 Score=48.52 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=78.3
Q ss_pred cCHHHHHHHHHHHHH--cCcCccC----CHHHHHhhcCcEEEE-EECCeEEEEEEEeeecC-------------------
Q 017739 214 TDLSGIKQIIQPLVE--SGALVRR----TDEELLKALDSFYVV-EREGQIIACAALFPFFK------------------- 267 (366)
Q Consensus 214 ~Di~~I~~Li~~~~~--~~~~~~r----s~e~l~~~i~~~~V~-e~dg~IVG~a~l~~~~d------------------- 267 (366)
+-++++..+-..... -++.+.. ..+++.+.--.|.++ ..+|+|+||+.+.|...
T Consensus 15 ~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~ 94 (209)
T COG3916 15 KALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPS 94 (209)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCC
Confidence 334455555444322 2333322 233443333355555 78999999999986321
Q ss_pred -CCeEEEEEEEECc--cccCC---c-HHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEece
Q 017739 268 -EKCGEVAAIGVSP--ECRGQ---G-QGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 328 (366)
Q Consensus 268 -~~~~eL~~laV~P--~yRGq---G-iG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~~ 328 (366)
.+..|...++|++ .-+.. . .+..|+.-+++++.+.|++.|...| +...+.+++.||.....
T Consensus 95 ~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril~r~Gw~~~ri 163 (209)
T COG3916 95 SPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERILRRAGWPLTRI 163 (209)
T ss_pred CCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHHHHcCCCeEEc
Confidence 3788999999997 33332 2 4778999999999999999998888 47789999999987653
No 146
>PRK08373 aspartate kinase; Validated
Probab=95.47 E-value=0.021 Score=56.75 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=47.1
Q ss_pred cccCCCccc--ccccc-------C---CHHHHHHHHHHHcCCceEEEEeCCc-ccCCC------CcccccCCHHHHHHHH
Q 017739 13 NVDFESLIL--CAFAN-------F---STYEVATACALAIEADKLICIIDGP-ILDES------GHLIRFLTLQEADSLI 73 (366)
Q Consensus 13 ~~~~~~~~~--ge~~N-------~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~------g~l~~~l~~~~a~~~l 73 (366)
.++.+.+|+ |-+.| + ++|..|+.+|.+|+||+++++||.+ +.+.+ .++++.|+.+||.+|-
T Consensus 163 ~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela 242 (341)
T PRK08373 163 LLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAA 242 (341)
T ss_pred HHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHH
Confidence 345667776 33223 2 6799999999999999999999988 54433 4689999999999875
No 147
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=95.35 E-value=0.064 Score=53.14 Aligned_cols=45 Identities=29% Similarity=0.505 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeec
Q 017739 156 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 156 ~~~~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
||.+||.||--|+++|+ .+.|.++..+..++ .+......||.+..
T Consensus 215 GM~TKl~AA~iA~~aG~-~~iI~~g~~~~~i~-~~~~~~~~GT~F~~ 259 (369)
T COG0263 215 GMRTKLEAAKIATRAGV-PVIIASGSKPDVIL-DALEGEAVGTLFEP 259 (369)
T ss_pred cHHHHHHHHHHHHHcCC-cEEEecCCCcchHH-HHHhCCCCccEEec
Confidence 49999999999999999 67788998888555 55567788998764
No 148
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=95.30 E-value=0.032 Score=53.54 Aligned_cols=85 Identities=19% Similarity=0.345 Sum_probs=57.4
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCc-CccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEee--
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP-- 264 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~-~~~rs~e~l~~~i----------------~~~~V~e~--dg~IVG~a~l~~-- 264 (366)
+.+||++..|++++.+|-... ..++ ..|-+++.+...+ .+++|.++ .|+++|++++..
T Consensus 2 lvvRP~~~aDl~al~~LA~~s-g~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~v 80 (336)
T COG3138 2 LVVRPVERADLEALMELAVKT-GVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAV 80 (336)
T ss_pred cccccccccCHHHHHHHHHhc-CCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEee
Confidence 358999999999999996432 2222 2344444443332 26778887 699999988852
Q ss_pred -----ec----------------------------CCCeEEEEEEEECccccCCcHHHHH
Q 017739 265 -----FF----------------------------KEKCGEVAAIGVSPECRGQGQGDKL 291 (366)
Q Consensus 265 -----~~----------------------------d~~~~eL~~laV~P~yRGqGiG~~L 291 (366)
+. -.+..|+..++++|+||..+.|+.|
T Consensus 81 Gl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Ll 140 (336)
T COG3138 81 GLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLL 140 (336)
T ss_pred ccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhh
Confidence 10 0256688999999999977777644
No 149
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=95.30 E-value=0.076 Score=51.76 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHHH
Q 017739 28 STYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l~ 74 (366)
.+|..|+.+|.+|+||+++++||.+ +. | ++.++++.|+.+||++|..
T Consensus 205 gsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~ 258 (295)
T cd04259 205 GSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIAT 258 (295)
T ss_pred ChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 5799999999999999999999998 43 3 2458999999999999974
No 150
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=95.18 E-value=0.025 Score=57.60 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=45.9
Q ss_pred CccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEecee
Q 017739 279 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSIE 329 (366)
Q Consensus 279 ~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k~GF~~~~~~ 329 (366)
...||++|+|++||+.+++.|++.+..++.+.+. .+..+|+|+||+..|..
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYELDGPY 510 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHHhCccccCCc
Confidence 4779999999999999999999999999988884 88999999999987753
No 151
>PRK14556 pyrH uridylate kinase; Provisional
Probab=95.07 E-value=0.081 Score=50.33 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=44.9
Q ss_pred eeeccccCCCccc---cc-cccCCHHHHHHHHHHHcCCceEEEEeCCc-ccCCC------CcccccCCHHHH
Q 017739 9 RISVNVDFESLIL---CA-FANFSTYEVATACALAIEADKLICIIDGP-ILDES------GHLIRFLTLQEA 69 (366)
Q Consensus 9 ~~~~~~~~~~~~~---ge-~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~------g~l~~~l~~~~a 69 (366)
++..+++.|.+++ |. .=.+++|.+|+.+|..|+||.|+++||.+ +.+.+ -++++.++..|+
T Consensus 128 ~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~ 199 (249)
T PRK14556 128 EFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEV 199 (249)
T ss_pred HHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhh
Confidence 4556778888888 21 33688999999999999999999999987 44433 346666665543
No 152
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=95.06 E-value=0.11 Score=43.87 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=58.2
Q ss_pred hcCcEEEEEECCeEEEEEEEeeec---CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc--HHHHHH
Q 017739 243 ALDSFYVVEREGQIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADW 317 (366)
Q Consensus 243 ~i~~~~V~e~dg~IVG~a~l~~~~---d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t--t~A~~f 317 (366)
.....|.+..+|.+||++.+...+ .+-..-++.+.+...|||+|+|++..+.+...++ |...|-... ++|..|
T Consensus 35 ~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~w~Va~i~EN~PA~~f 112 (143)
T COG5628 35 PVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GVWQVATVRENTPARAF 112 (143)
T ss_pred cccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--ceEEEEEeccCChhHHH
Confidence 334566777899999999887422 1233457778999999999999999998877764 445544333 689999
Q ss_pred HHHCCCe
Q 017739 318 FKSRGFR 324 (366)
Q Consensus 318 Y~k~GF~ 324 (366)
|++.-..
T Consensus 113 wK~~~~t 119 (143)
T COG5628 113 WKRVAET 119 (143)
T ss_pred HHhhhcc
Confidence 9986543
No 153
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.90 E-value=0.061 Score=55.20 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=90.9
Q ss_pred ccceEEeCCccCHHHHHHHHHHHHHcCcCcc-CCHHHHHhhc--CcEEEE--E-----ECCeEEEEEEEeeecCCCeEEE
Q 017739 204 LYEGTRTAKVTDLSGIKQIIQPLVESGALVR-RTDEELLKAL--DSFYVV--E-----REGQIIACAALFPFFKEKCGEV 273 (366)
Q Consensus 204 ~~~~IR~at~~Di~~I~~Li~~~~~~~~~~~-rs~e~l~~~i--~~~~V~--e-----~dg~IVG~a~l~~~~d~~~~eL 273 (366)
|..++++....+++.|.+|.+..-+...... ..++++.+.. ..+.++ . -|.-+||.+.+.. .++...|
T Consensus 412 m~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~k--k~~~w~I 489 (574)
T COG3882 412 MRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEK--KESEWFI 489 (574)
T ss_pred EEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEe--cCCeEEh
Confidence 4568899999999999999887655555443 3567776633 233332 1 2455888888874 3466777
Q ss_pred EEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHHCCCeEece
Q 017739 274 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSI 328 (366)
Q Consensus 274 ~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t------t~A~~fY~k~GF~~~~~ 328 (366)
..+..+=.-=|+++-.+||..++++|...|+..++..- .....||+++||+..+.
T Consensus 490 Dt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 490 DTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 77666666669999999999999999999999887655 25689999999996653
No 154
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=94.82 E-value=0.045 Score=54.12 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-ccCCC------CcccccCCHHHHHHH
Q 017739 28 STYEVATACALAIEADKLICIIDGP-ILDES------GHLIRFLTLQEADSL 72 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~~~~------g~l~~~l~~~~a~~~ 72 (366)
.+|..|+.+|.+|+||.++++||.+ +.+.+ -++++.|+.+||..+
T Consensus 180 gSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~el 231 (327)
T TIGR02078 180 GSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIA 231 (327)
T ss_pred ChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHH
Confidence 6899999999999999999999987 54444 358899999998755
No 155
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=94.37 E-value=0.6 Score=42.60 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=80.4
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcC-ccCCHHHHHhhcC------cEEEEEECC-eEEEEEEEeeecC-------C---
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALD------SFYVVEREG-QIIACAALFPFFK-------E--- 268 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~-~~rs~e~l~~~i~------~~~V~e~dg-~IVG~a~l~~~~d-------~--- 268 (366)
.+|++++.|++++.+|++.....--. ...+.|++.-++- ..+|.+.++ +|-.++.++..+. .
T Consensus 30 glR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l 109 (190)
T PF02799_consen 30 GLRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTL 109 (190)
T ss_dssp TEEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEE
T ss_pred ccccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccce
Confidence 49999999999999999987665433 3457888887762 456666655 8888888886432 1
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEec
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECS 327 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k~GF~~~~ 327 (366)
..+++. +.+... =--..|+..++-.|++.|+....++.- ....|.+++.|.+.+
T Consensus 110 ~aAY~f-Y~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~Gd 164 (190)
T PF02799_consen 110 KAAYSF-YYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGD 164 (190)
T ss_dssp EEEEEE-EEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEE
T ss_pred eeeeee-eeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCC
Confidence 234443 233322 346789999999999999999888873 455789999999765
No 156
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=94.32 E-value=0.063 Score=50.39 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHhcCCCeEEecccccCchhhhhhhcccCccceeec
Q 017739 156 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 202 (366)
Q Consensus 156 ~~~~~l~~a~~a~~~GV~rvhlvd~~~~g~ll~Elft~~G~GTmI~~ 202 (366)
||-++|.||..|..+|| .+.|.++..+..+- .++.-.-.||++.+
T Consensus 231 GM~tKv~AA~~A~~~Gv-~viI~~g~~p~~I~-~iv~g~kvgt~f~~ 275 (285)
T KOG1154|consen 231 GMETKVKAAVNALNAGV-SVIITNGDAPENIT-DIVEGKKVGTFFEQ 275 (285)
T ss_pred cchhhHHHHHHHhcCCc-eEEEeCCCChHHHH-HHHhhhhhhhhhhh
Confidence 38899999999999999 56678888887643 33334446666644
No 157
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=94.31 E-value=0.53 Score=46.14 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=79.9
Q ss_pred ccCHHHHHHHHHHHHHcCcCccCCHHHHHhhcC------cEEEEE-ECCeEEEEEEEeeecCCCeEEEEEEEECccccCC
Q 017739 213 VTDLSGIKQIIQPLVESGALVRRTDEELLKALD------SFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 285 (366)
Q Consensus 213 ~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~------~~~V~e-~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGq 285 (366)
.+|++...+++.......-....+.+.+++-.+ .++++. .+|++||.+.+.... +..+....+.++++++.
T Consensus 157 ~~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~--~~~~~~~~g~~~~~~~~ 234 (330)
T TIGR03019 157 DGDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYFR--DEVLPYYAGGLREARDV 234 (330)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEeC--CEEEEEeccChHHHHhh
Confidence 466888888887654443323456665544321 345556 689998887665443 33333345678999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcH----HHHHHHHHCCCeEecee
Q 017739 286 GQGDKLLDYIEKKAASLGLDMLFLLTT----RTADWFKSRGFRECSIE 329 (366)
Q Consensus 286 GiG~~LL~~l~~~Ar~~Gi~~l~l~tt----~A~~fY~k~GF~~~~~~ 329 (366)
+-+..|+..++++|+++|++..-+... ...+|-++.||++....
T Consensus 235 ~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~ 282 (330)
T TIGR03019 235 AANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLH 282 (330)
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccce
Confidence 999999999999999999998877652 34566677899987643
No 158
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.75 E-value=0.19 Score=53.79 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=59.8
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC-------------CCEEE----------------------------
Q 017739 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-------------LDMLF---------------------------- 308 (366)
Q Consensus 270 ~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G-------------i~~l~---------------------------- 308 (366)
-+.|-.+||||+|++.|+|++.++.+.++...++ ++++.
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er 693 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSER 693 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccC
Confidence 4567799999999999999999999888764321 11110
Q ss_pred -------E-----EcHHHHHHHHHCCCeEeceeccchHHHhhhcCCCCceeEEEecCCCCCC
Q 017739 309 -------L-----LTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDTSG 358 (366)
Q Consensus 309 -------l-----~tt~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~s~vl~k~l~~~~~~ 358 (366)
+ +|..-.+|+++.||.++.+.+.+... -..++-+++|.|-++.++
T Consensus 694 ~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~l-----TGEHtcimLk~L~~~e~~ 750 (1011)
T KOG2036|consen 694 PPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDL-----TGEHTCIMLKTLEGDESG 750 (1011)
T ss_pred CCcccceeeecccCCHHHHHHHHhcCceeEEeecccccc-----ccceeEEEEecCCCcccc
Confidence 1 11355799999999999876655321 225778888988766654
No 159
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=93.65 E-value=0.27 Score=40.24 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=47.5
Q ss_pred EEEEECCeEEEEEEEeeec-CCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 017739 248 YVVEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 318 (366)
Q Consensus 248 ~V~e~dg~IVG~a~l~~~~-d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t---t~A~~fY 318 (366)
+-+..++...||+.+.+.. +...++|+.++|.|+.||+|+++.|+..+.+.. ..++..+ .....||
T Consensus 11 ~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 80 (99)
T cd04264 11 HAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF-----PKLFWRSRKTNPINPWY 80 (99)
T ss_pred eEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCcccceE
Confidence 3344556678888886422 247899999999999999999999999887663 4555554 2334555
No 160
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=93.37 E-value=0.11 Score=39.71 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=25.6
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHH
Q 017739 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 270 ~~eL~~laV~P~yRGqGiG~~LL~~l~~~A 299 (366)
..-|..+.|+|.+|++||+++||+.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 345789999999999999999999877654
No 161
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=93.08 E-value=0.32 Score=44.29 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=37.1
Q ss_pred eEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 017739 255 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 255 ~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
.++|+..-.... ...-.++|+.|.|.||++|+|+-|++..-..++..|
T Consensus 66 h~vGyFSKEk~s-~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKES-WDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS--TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEecc-cCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 477777655332 245689999999999999999999999999888775
No 162
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=92.33 E-value=0.8 Score=40.64 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=45.2
Q ss_pred ECCeEEEEEEEeeec----C--CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEE
Q 017739 252 REGQIIACAALFPFF----K--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 307 (366)
Q Consensus 252 ~dg~IVG~a~l~~~~----d--~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l 307 (366)
..+++||++.-.|.. + -.+.+|.-++||+.+|.++++--|++.+-+++...|+-+-
T Consensus 86 ~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qA 147 (162)
T PF01233_consen 86 SSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQA 147 (162)
T ss_dssp TTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EE
T ss_pred CCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceee
Confidence 369999999887632 1 2678999999999999999999999999999998887653
No 163
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=92.31 E-value=2.8 Score=39.76 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=64.4
Q ss_pred HHHHHHHHHHH----HcCcCccCCHHHHHhhcC------cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCc
Q 017739 217 SGIKQIIQPLV----ESGALVRRTDEELLKALD------SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQG 286 (366)
Q Consensus 217 ~~I~~Li~~~~----~~~~~~~rs~e~l~~~i~------~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqG 286 (366)
++-.+|++... ..+-..+.+.+++...+. .++-+..+|++||++.+...++ ...-+ ..+-+|+|...+
T Consensus 106 ~E~~~Ly~rY~~~rH~dg~m~~~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d-~lSAV-Y~FyDPd~~~~S 183 (240)
T PRK01305 106 EEHYALYRRYLRARHADGGMDPPSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDD-GLSAV-YTFYDPDEEHRS 183 (240)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCC-ceeeE-EEeeCCCccccC
Confidence 34455555542 222234456666665542 3344456899999998875553 34444 357799999999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 287 QGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 287 iG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
+|+-.+-.-++.|++.|++.+++.-
T Consensus 184 LG~~~iL~qI~~ak~~gl~y~YLGY 208 (240)
T PRK01305 184 LGTFAILWQIELAKRLGLPYVYLGY 208 (240)
T ss_pred CHHHHHHHHHHHHHHcCCCeEeeeE
Confidence 9999999999999999999998743
No 164
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=91.77 E-value=2 Score=42.78 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=83.9
Q ss_pred ceEEeCCccCHHHHHHHHHHHHH-cCcCccCCHHHHHhhcC------cEEEEEE-CCeEEEEEEEeeecCC---------
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVE-SGALVRRTDEELLKALD------SFYVVER-EGQIIACAALFPFFKE--------- 268 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~-~~~~~~rs~e~l~~~i~------~~~V~e~-dg~IVG~a~l~~~~d~--------- 268 (366)
.-+|+++..|++++.+|+..... ..+....+.|+++.++- ..||++. +|+|-+++.++..+..
T Consensus 261 ~G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~kt 340 (421)
T KOG2779|consen 261 PGLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKT 340 (421)
T ss_pred CCcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcce
Confidence 36899999999999999988644 44445567888887752 4456665 8999999999865431
Q ss_pred -CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHHCCCeEec
Q 017739 269 -KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 327 (366)
Q Consensus 269 -~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t-t~A~~fY~k~GF~~~~ 327 (366)
..+++ ++.|+.+ --=..|+..++-.|++.|+....++. -....|+++++|-+.+
T Consensus 341 l~aaYl-yY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~Gd 396 (421)
T KOG2779|consen 341 LQAAYL-YYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGD 396 (421)
T ss_pred eeeeeE-EEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCC
Confidence 33444 3444444 22457788888889999998776666 3667899999998754
No 165
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=91.66 E-value=0.73 Score=37.69 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=45.1
Q ss_pred EEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 017739 250 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 318 (366)
Q Consensus 250 ~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t---t~A~~fY 318 (366)
+..++..=||+.+.+......++|+.++|.|+.||+|+|+.|++.+.+.. ..++..+ .....||
T Consensus 14 ~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 80 (99)
T cd04265 14 IYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNPINPWY 80 (99)
T ss_pred EEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCcccceE
Confidence 34445555777665422247899999999999999999999999887764 3455554 2344565
No 166
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=91.19 E-value=0.37 Score=46.95 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=44.3
Q ss_pred cccccCC---HHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHHHH
Q 017739 22 CAFANFS---TYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 22 ge~~N~~---~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l~~ 75 (366)
|++-++- +|..|+.+|.+|+||+++++||.+ +. | .+.++++.++..||.+|...
T Consensus 194 G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~ 257 (293)
T cd04243 194 GETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYF 257 (293)
T ss_pred CCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhC
Confidence 5655443 699999999999999999999987 43 2 45689999999999999743
No 167
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=90.74 E-value=5.1 Score=34.25 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=54.5
Q ss_pred CHHHHHhhcC------cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEE
Q 017739 236 TDEELLKALD------SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 309 (366)
Q Consensus 236 s~e~l~~~i~------~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l 309 (366)
+++++...+. ...-...+|++||++.+...++ ...-+. .+-+|++...++|+-.+-.-++.|++.|++.+++
T Consensus 24 ~~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~-glSaVY-~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 24 SQEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPD-GLSAVY-TFYDPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred CHHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccc-hhhhee-eeeCCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 3566655442 3344567899999988875553 333443 4569999999999999999999999999999887
No 168
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=90.63 E-value=0.61 Score=45.07 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=37.5
Q ss_pred eEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 017739 255 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 255 ~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
.+||+..=..... ..--|+||.|.|.||++|+|+-|++..-+.++..|
T Consensus 141 h~vGYFSKEK~s~-~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 141 HIVGYFSKEKVSA-EDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred EEEEEeceecccc-CCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 4777766543221 23469999999999999999999999888887775
No 169
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=90.32 E-value=0.29 Score=39.72 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=34.9
Q ss_pred CcEEEEEECCeEEEEEEEeeecC----------------------CCeEEEEEEEECccccCCcHHHHHH
Q 017739 245 DSFYVVEREGQIIACAALFPFFK----------------------EKCGEVAAIGVSPECRGQGQGDKLL 292 (366)
Q Consensus 245 ~~~~V~e~dg~IVG~a~l~~~~d----------------------~~~~eL~~laV~P~yRGqGiG~~LL 292 (366)
.+++|.+.+.++|||+.+..... ...+|++.++|+|+||+...-..|+
T Consensus 31 ~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 31 VHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 35555544445999999864211 2678999999999999988776665
No 170
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=89.78 E-value=0.44 Score=47.17 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=41.9
Q ss_pred cccCCcHHHHHHHHHHHHHHH-CCCCEEEEEc-HHHHHHHHHCCCeEecee
Q 017739 281 ECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT-TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 281 ~yRGqGiG~~LL~~l~~~Ar~-~Gi~~l~l~t-t~A~~fY~k~GF~~~~~~ 329 (366)
.||+||+|..||+.++..|++ .|-..+.+.+ ..+.++|+|+||+..++.
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChh
Confidence 589999999999999999975 5777777776 478999999999987753
No 171
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=89.73 E-value=1.1 Score=49.92 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-cc--CC----CCcccccCCHHHHHHHHH
Q 017739 28 STYEVATACALAIEADKLICIIDGP-IL--DE----SGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~--~~----~g~l~~~l~~~~a~~~l~ 74 (366)
.+|..|+.+|.+|+||+|+++||.+ +. |. +-++++.|+.+||++|..
T Consensus 214 gsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~ 267 (861)
T PRK08961 214 GSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIAT 267 (861)
T ss_pred chHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHH
Confidence 4799999999999999999999998 43 32 347999999999999874
No 172
>PTZ00064 histone acetyltransferase; Provisional
Probab=89.54 E-value=0.68 Score=47.87 Aligned_cols=48 Identities=21% Similarity=0.129 Sum_probs=37.4
Q ss_pred eEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 017739 255 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 255 ~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
.+||+..=..... ..--|+||.|.|.||++|+|+-|+++--...+..|
T Consensus 370 HiVGYFSKEK~S~-~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 370 HIVGYFSKEKVSL-LHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred EEEEEecccccCc-ccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 5777765543221 23469999999999999999999999888888775
No 173
>PLN03239 histone acetyltransferase; Provisional
Probab=88.85 E-value=0.94 Score=44.98 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=36.7
Q ss_pred eEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 017739 255 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 255 ~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
.+||+..=..... ..--|+||.|.|.||++|+|+-|++..-+.++..|
T Consensus 199 h~vGYFSKEK~s~-~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 199 HPVGYYSKEKYSD-VGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred EEEEEeeecccCC-CCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 4666665443221 22369999999999999999999999888887765
No 174
>PRK14852 hypothetical protein; Provisional
Probab=88.52 E-value=2.7 Score=47.23 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=84.2
Q ss_pred EEeC-CccCHHHHHHHHHH-HHHcCcCccCCHHHHHhh---cC--cEEEEEECCeEEEEEEEeeecC-------------
Q 017739 208 TRTA-KVTDLSGIKQIIQP-LVESGALVRRTDEELLKA---LD--SFYVVEREGQIIACAALFPFFK------------- 267 (366)
Q Consensus 208 IR~a-t~~Di~~I~~Li~~-~~~~~~~~~rs~e~l~~~---i~--~~~V~e~dg~IVG~a~l~~~~d------------- 267 (366)
+|.+ +.+|...+..|.+. +...|+..+-+-..+.+. +. ..+++-..+++++...+.+...
T Consensus 31 ~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~e 110 (989)
T PRK14852 31 IKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPE 110 (989)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHH
Confidence 4443 55778888888766 466677654332222222 21 3366655567777776654211
Q ss_pred --------CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHH-CCCeEece
Q 017739 268 --------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKS-RGFRECSI 328 (366)
Q Consensus 268 --------~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k-~GF~~~~~ 328 (366)
...+|+..++++|+.|.+-+=-.+++.+.+++...++..+++.++ +-..||++ +||+..+.
T Consensus 111 Ld~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 111 VDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred HHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCccccc
Confidence 267899999999988887777788888888888889999988884 77899997 89998874
No 175
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=87.67 E-value=0.67 Score=47.55 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=40.9
Q ss_pred cEEEE-EEC---CeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 017739 246 SFYVV-ERE---GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 246 ~~~V~-e~d---g~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
.|+|+ +.| -.+||+..=..... +.--|+||.|.|.||++|+|+-|++..-+..+..|
T Consensus 279 lFYvl~e~d~~g~h~vGyFSKEk~s~-~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 279 LFYVLCECDDRGCHMVGYFSKEKHSE-EDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred EEEEEEEecCCCcEEEEEecccccCc-CCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 34554 443 36788766543222 22469999999999999999999998877777665
No 176
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=87.01 E-value=0.45 Score=48.52 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=46.2
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEE-----c-HH---HHHHHHHCCCeEec
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL-----T-TR---TADWFKSRGFRECS 327 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~-----t-t~---A~~fY~k~GF~~~~ 327 (366)
..+.|+.+.|||+||+-|+|..-+..+.++..++-+...+-. | .+ =..||++.||+...
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 456799999999999999999999999999988755554432 2 12 24799999999653
No 177
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=86.84 E-value=1 Score=43.71 Aligned_cols=53 Identities=19% Similarity=0.110 Sum_probs=43.9
Q ss_pred cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHHH
Q 017739 22 CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 22 ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l~ 74 (366)
|++--+ -+|-.|+-+|.+|+||.+.+.||.+ +.+ .+-+.++.||.+||.+|..
T Consensus 189 G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~ 251 (288)
T cd04245 189 GDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSY 251 (288)
T ss_pred CCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHH
Confidence 455555 7999999999999999999999987 433 3457899999999999963
No 178
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=6.3 Score=37.01 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=64.6
Q ss_pred CCccCHHHHHHHHHHHHHcCcCccCCHHHHHhh--c-CcEEEEEE-CCeEEEEEEEeeecCCC--eEEEEEEEECccccC
Q 017739 211 AKVTDLSGIKQIIQPLVESGALVRRTDEELLKA--L-DSFYVVER-EGQIIACAALFPFFKEK--CGEVAAIGVSPECRG 284 (366)
Q Consensus 211 at~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~--i-~~~~V~e~-dg~IVG~a~l~~~~d~~--~~eL~~laV~P~yRG 284 (366)
..+.++.+..++..............++.+... . .-..-+.. ||++||...-+|-...+ ..+=..++|.|++|+
T Consensus 9 ~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~ 88 (266)
T COG3375 9 TDPAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKG 88 (266)
T ss_pred CCHHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhccccccc
Confidence 344556666666555443332222233444322 1 23333444 45999998887722222 333446899999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 285 QGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 285 qGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
.|+|-+|=..--++++.+|+..+...-
T Consensus 89 sglg~aLK~~Qre~a~~~G~tli~WTf 115 (266)
T COG3375 89 SGLGVALKMKQRERALSMGYTLIAWTF 115 (266)
T ss_pred cchhhhhHHHHHHHHHhcCeeeEEEec
Confidence 999999999999999999998886544
No 179
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=85.95 E-value=1.4 Score=42.93 Aligned_cols=45 Identities=24% Similarity=0.218 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l 73 (366)
+|..|+.+|..|+||.++++||.+ +.+ .+.++++.++.+||.++.
T Consensus 205 SD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~ 256 (294)
T cd04257 205 SDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELS 256 (294)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHH
Confidence 499999999999999999999986 432 345799999999999996
No 180
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=84.50 E-value=12 Score=35.97 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=60.0
Q ss_pred eEEeC---CccCHHHHHHHHHHHHHcCcCccCCHHHHHh-------hcCcEEEEEE-CCeEEEEEEEeeecCCCeEEEEE
Q 017739 207 GTRTA---KVTDLSGIKQIIQPLVESGALVRRTDEELLK-------ALDSFYVVER-EGQIIACAALFPFFKEKCGEVAA 275 (366)
Q Consensus 207 ~IR~a---t~~Di~~I~~Li~~~~~~~~~~~rs~e~l~~-------~i~~~~V~e~-dg~IVG~a~l~~~~d~~~~eL~~ 275 (366)
.+.+. ++++.+++.++...+..... ......+.. .-...+++.. ||+++|++...+....+...+.-
T Consensus 134 ~~~~~~~~~~~~~~el~~i~~~W~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~ 211 (299)
T PF09924_consen 134 EVVPIPELDPELRDELLEISDEWLKEKE--RPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDF 211 (299)
T ss_dssp EEEE-----GGGHHHHHHHHHHHHHHCT--HHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHhcCc--hhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCCccEEEEE
Confidence 45555 77888888888887766641 100111111 1125566777 99999999999876434444433
Q ss_pred EEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 276 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 276 laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
.--+|+ -=+|+-..|+..+++.+++.|++.+.+..
T Consensus 212 ~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 212 EKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp EEE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred EecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 334555 34789999999999999989999987544
No 181
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=84.31 E-value=3.1 Score=41.76 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=66.6
Q ss_pred cCHHHHHHHHHHHHHcCcCccCCHHHHHhhcC----cEEEEEECCeEEEEEEEeee--cCCCeEEEEEEEECccccC-Cc
Q 017739 214 TDLSGIKQIIQPLVESGALVRRTDEELLKALD----SFYVVEREGQIIACAALFPF--FKEKCGEVAAIGVSPECRG-QG 286 (366)
Q Consensus 214 ~Di~~I~~Li~~~~~~~~~~~rs~e~l~~~i~----~~~V~e~dg~IVG~a~l~~~--~d~~~~eL~~laV~P~yRG-qG 286 (366)
-|++.+..|++........ ...++..+. ..+|. |.--|.+.+... .+++..++..+||.++.+| .|
T Consensus 345 Ldl~r~q~LI~~SFkRTLd----~h~y~~r~~~~La~~iVs---gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~g 417 (495)
T COG5630 345 LDLPRLQHLIQSSFKRTLD----PHYYETRINTPLARAIVS---GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEG 417 (495)
T ss_pred cCcHHHHHHHHHHHhhccC----HHHHHHhccCcceeEEee---ccceeeEEEEeeccCCCCCcceeeeeccccccccch
Confidence 4677888888776555433 345555443 33443 445566666544 3458899999999999999 99
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHH--HHCCCeE
Q 017739 287 QGDKLLDYIEKKAASLGLDMLFLLTTRTADWF--KSRGFRE 325 (366)
Q Consensus 287 iG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY--~k~GF~~ 325 (366)
++..++.-+.++..++=+.+-. .++++-+|| +.-|+-.
T Consensus 418 isd~vfniM~e~fP~eL~WRSR-~~N~vNkwYf~rSvg~lk 457 (495)
T COG5630 418 ISDAVFNIMREEFPNELFWRSR-HNNQVNKWYFARSVGYLK 457 (495)
T ss_pred HHHHHHHHHHHhCcHhhhhhhc-ccCcchheeeehhhehhh
Confidence 9999999888777543222221 224667777 3345443
No 182
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=84.05 E-value=1.3 Score=44.74 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.3
Q ss_pred EEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 017739 271 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 271 ~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
-.++|+.|.|-||++|+|+-|+++--...+..|
T Consensus 261 yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 261 YNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred cceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 459999999999999999999998777776543
No 183
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=83.54 E-value=4.7 Score=44.84 Aligned_cols=45 Identities=27% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l 73 (366)
+|..|+.+|..|+||.++++||.+ +. | ++-++++.++..||.++.
T Consensus 207 SD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~ 258 (819)
T PRK09436 207 SDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELS 258 (819)
T ss_pred chHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHH
Confidence 699999999999999999999997 33 2 345799999999999985
No 184
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=83.53 E-value=2.2 Score=41.88 Aligned_cols=46 Identities=30% Similarity=0.369 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l~ 74 (366)
+|..|+.+|..|+|+.++++||.+ +. | .+.++++.|+.+||.+|..
T Consensus 215 sD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~ 267 (306)
T cd04247 215 TDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTY 267 (306)
T ss_pred hHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHh
Confidence 689999999999999999999986 33 2 4568999999999999973
No 185
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=82.51 E-value=2.5 Score=41.20 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l~~ 75 (366)
+|..|+-+|..|+||.++++||.+ +.+ .+.++++.|+.+||.+|...
T Consensus 203 sD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~ 256 (292)
T cd04258 203 SDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATF 256 (292)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHC
Confidence 499999999999999999999987 432 34689999999999999743
No 186
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=81.77 E-value=6.5 Score=37.31 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEeceeccchHHHhhhcCCCCceeEEEecCCCCC
Q 017739 285 QGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDTS 357 (366)
Q Consensus 285 qGiG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~s~vl~k~l~~~~~ 357 (366)
.+-...|+..+.+.|++.|+.+|++-+. .....|++.||...+.- | ..|+. ...+||-+.+...+
T Consensus 20 ~~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e~~i--~----~~f~g--~~~~~~~~~~~~~r 85 (266)
T TIGR03827 20 GNDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEEAKI--P----GYFNG--HDAYFMSKYLDEDR 85 (266)
T ss_pred CccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEEEec--c----cccCC--CceEEEEEcCchHh
Confidence 3458899999999999999999999994 66799999999987643 2 23333 45677766665544
No 187
>PRK09084 aspartate kinase III; Validated
Probab=80.17 E-value=3.1 Score=42.96 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=44.5
Q ss_pred cccccC---CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHHHHh
Q 017739 22 CAFANF---STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 22 ge~~N~---~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l~~~ 76 (366)
|++--+ .+|..|+.+|..|+||.++++||.+ +.+ ++.++++.|+.+||.+|....
T Consensus 189 G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~G 253 (448)
T PRK09084 189 GRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFG 253 (448)
T ss_pred CCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCC
Confidence 455445 6799999999999999999999987 332 346799999999999987543
No 188
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=77.25 E-value=2.2 Score=35.99 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=33.9
Q ss_pred EEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc--HHHHHHHHH
Q 017739 272 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFKS 320 (366)
Q Consensus 272 eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t--t~A~~fY~k 320 (366)
-|-.++|+++.|++|+|++|++++++.-.-. ...+-... ..-..|.+|
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e~~~-p~~~a~DrPS~Kll~Fl~K 97 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEENVS-PHQLAIDRPSPKLLSFLKK 97 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHcCCC-cccceecCCcHHHHHHHHH
Confidence 3457899999999999999999988765322 22333333 355677766
No 189
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=76.93 E-value=13 Score=33.59 Aligned_cols=97 Identities=13% Similarity=0.202 Sum_probs=70.9
Q ss_pred EECCeEEEEEEEeeecC---------------------------CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC
Q 017739 251 EREGQIIACAALFPFFK---------------------------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 251 e~dg~IVG~a~l~~~~d---------------------------~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
..+|++++++++..-.+ ....||+.++.. +.|.+..|+..+.......|
T Consensus 41 ~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g 116 (179)
T PF12261_consen 41 DSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQG 116 (179)
T ss_pred cCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCC
Confidence 67899999999974221 256788888865 58889999999999999999
Q ss_pred CCEEEEEc-HHHHHHHHHCCCeEecee-----ccc--hHHHhhhcCCCCceeEEEec
Q 017739 304 LDMLFLLT-TRTADWFKSRGFRECSIE-----MIP--EERRKRINLSRNSKYYMKKL 352 (366)
Q Consensus 304 i~~l~l~t-t~A~~fY~k~GF~~~~~~-----~Lp--~~r~~~Y~~~r~s~vl~k~l 352 (366)
++-+.... .+-.+.|.++|....... .|+ ...|..|..++ .+|+.-.|
T Consensus 117 ~~w~vfTaT~~lr~~~~rlgl~~~~La~Ad~~rl~~~~~~WGsYY~~~-P~V~a~~l 172 (179)
T PF12261_consen 117 FEWVVFTATRQLRNLFRRLGLPPTVLADADPSRLGDDRASWGSYYDHQ-PQVMAGDL 172 (179)
T ss_pred CCEEEEeCCHHHHHHHHHcCCCceeccccCHhHcCcChhhhhhhhcCC-CeEEEEEH
Confidence 99775544 577899999999987643 343 34567776654 34444433
No 190
>PRK05925 aspartate kinase; Provisional
Probab=74.28 E-value=5.3 Score=41.18 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-ccC------CCCcccccCCHHHHHHHHH
Q 017739 28 STYEVATACALAIEADKLICIIDGP-ILD------ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~~------~~g~l~~~l~~~~a~~~l~ 74 (366)
.+|..|+.+|..|+||.++++||.+ +.+ .+-++++.++.+||++|..
T Consensus 189 gsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~ 242 (440)
T PRK05925 189 GSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLAS 242 (440)
T ss_pred cHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHh
Confidence 3689999999999999999999987 432 3457999999999999864
No 191
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=21 Score=33.60 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=64.8
Q ss_pred eEEeCCccCHHHHHHHHHHHHH-----cCcCccC-CHHHHHhhcC--cEEEEEE----CCeEEEEEEEe-----eecC--
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVE-----SGALVRR-TDEELLKALD--SFYVVER----EGQIIACAALF-----PFFK-- 267 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~-----~~~~~~r-s~e~l~~~i~--~~~V~e~----dg~IVG~a~l~-----~~~d-- 267 (366)
.+|+..+.-...|.+++..+-. .++-.+. +.+.+.+.-+ .+++.+. .+.|.|++-+. -+++
T Consensus 22 ~lrp~~p~~~~~v~eiId~LgklSAkaq~l~~piTsadKl~~sd~~vvy~~kd~~a~~ks~l~GllKVG~KkLfl~D~~~ 101 (264)
T KOG4601|consen 22 DLRPYGPKRYWAVAEIIDCLGKLSAKAQGLKRPITSADKLVDSDEEVVYYIKDEKANGKSILKGLLKVGYKKLFLTDNEQ 101 (264)
T ss_pred hcccCCcchhHHHHHHHHHHHHhhHHHhccccccchHHHhhcCcceEEEEEeecccCcchheeeeehccceeEEEeccHh
Confidence 4666666666677777766422 2333333 3444543322 2222222 14566665543 2222
Q ss_pred ----CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH--HHHHHHHH-CCCe
Q 017739 268 ----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT--RTADWFKS-RGFR 324 (366)
Q Consensus 268 ----~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt--~A~~fY~k-~GF~ 324 (366)
+...-|-.++||+..|++|.|..|+++++++-.-. ..++-+.-. .-..|..| .|-+
T Consensus 102 ~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~kE~ve-phQ~a~DrPS~kLl~Fm~khYgl~ 164 (264)
T KOG4601|consen 102 NQYEEEALCILDFYVHESEQRSGNGFKLFDYMLKKENVE-PHQCAFDRPSAKLLQFMEKHYGLK 164 (264)
T ss_pred hhhccCCceEEEEEeehhhhhcCchHHHHHHHHHhcCCC-chheeccChHHHHHHHHHHhcCcc
Confidence 23445668999999999999999999988765322 234444432 34556554 3443
No 192
>PHA01733 hypothetical protein
Probab=72.08 E-value=18 Score=31.95 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=61.3
Q ss_pred eEEeCCccCHHHHHH-HHHH--HHHcCcCccCCHHHHH----hhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEC
Q 017739 207 GTRTAKVTDLSGIKQ-IIQP--LVESGALVRRTDEELL----KALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 279 (366)
Q Consensus 207 ~IR~at~~Di~~I~~-Li~~--~~~~~~~~~rs~e~l~----~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~ 279 (366)
.|||+|.+|+..+.. +-+. .+-.+.-. +...+. ..-...+....+|.++|.++..+...++.+....+..+
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~--~p~~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~ 81 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH--SPLALHLSLDVSENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTP 81 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC--CcccchhhhhccccceEEEecCCcEEEEecccccccCCCCceeEEecH
Confidence 588999999865555 2211 11111111 111222 12234456666899999999986333455555444444
Q ss_pred ccccCCcHHHHHHHHHHHHHH-HCCCCEEEE----EcHHHHHHHHHCCCeEece
Q 017739 280 PECRGQGQGDKLLDYIEKKAA-SLGLDMLFL----LTTRTADWFKSRGFRECSI 328 (366)
Q Consensus 280 P~yRGqGiG~~LL~~l~~~Ar-~~Gi~~l~l----~tt~A~~fY~k~GF~~~~~ 328 (366)
.=.|- -...+........ ...+..|+= ....+.+|.+.+||+....
T Consensus 82 ~v~k~---~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~ 132 (153)
T PHA01733 82 AIEKN---PIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRY 132 (153)
T ss_pred HhHhC---CHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecc
Confidence 33332 2333333333332 223333322 2258899999999997653
No 193
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=70.90 E-value=22 Score=33.64 Aligned_cols=65 Identities=20% Similarity=0.125 Sum_probs=48.9
Q ss_pred eeeccccCCCccc--c--ccccCCHHHHHHHHHHHcCCceEEEEeC-Cc-------ccCCCCcccccCCHHHHHHHH
Q 017739 9 RISVNVDFESLIL--C--AFANFSTYEVATACALAIEADKLICIID-GP-------ILDESGHLIRFLTLQEADSLI 73 (366)
Q Consensus 9 ~~~~~~~~~~~~~--g--e~~N~~~~~vA~~~A~~l~AdKli~l~~-~~-------~~~~~g~l~~~l~~~~a~~~l 73 (366)
+..+++..|.+++ | --=-.++|.+|+-.|.+++||-||-.|. .. -.|.+-+....||.+|+.+..
T Consensus 117 ~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~ 193 (238)
T COG0528 117 EAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIG 193 (238)
T ss_pred HHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhc
Confidence 4556777788887 3 1224899999999999999999999984 43 245566788889988876664
No 194
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=69.23 E-value=11 Score=37.55 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=45.6
Q ss_pred EECCeEEEEEEEeeec----C--CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCE
Q 017739 251 EREGQIIACAALFPFF----K--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 306 (366)
Q Consensus 251 e~dg~IVG~a~l~~~~----d--~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~ 306 (366)
....++||++...|.. + -.+++|.-+|||+..|+++++--|++.+-.++.-.|+-+
T Consensus 142 ~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfq 203 (421)
T KOG2779|consen 142 KSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQ 203 (421)
T ss_pred ecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhh
Confidence 4457999999887631 2 268899999999999999999999999999887666543
No 195
>PRK09034 aspartate kinase; Reviewed
Probab=68.18 E-value=10 Score=39.21 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHHHH
Q 017739 28 STYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 28 ~~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l~~ 75 (366)
-+|--|+.+|.+|+||.+.+.||.+ +. | ++-+.++.|+.+||.+|...
T Consensus 198 gSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~ 252 (454)
T PRK09034 198 GSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYA 252 (454)
T ss_pred cHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhC
Confidence 5788999999999999999999997 43 2 34478999999999999644
No 196
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=65.40 E-value=12 Score=36.70 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCcccC--------CCCcccccCCHHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGPILD--------ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~~~~--------~~g~l~~~l~~~~a~~~l~ 74 (366)
+|--|+.+|.+|+||.+++.||..+.. ++-+.+..|+.+||.+|-.
T Consensus 214 SDyTAs~iAa~l~A~ev~I~TDV~i~taDPriV~~~~A~~i~~lsY~EA~ELA~ 267 (304)
T cd04248 214 SEMTFSRIAVLTGASEAIIHKEFHLSSADPKLVGEDKARPIGRTNYDVADQLAN 267 (304)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCceecCCCCccCCCCceEeCccCHHHHHHHHH
Confidence 677899999999999999999985322 3447888999999999963
No 197
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=64.20 E-value=13 Score=38.37 Aligned_cols=47 Identities=26% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCc-c--cC----CCCcccccCCHHHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGP-I--LD----ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~-~--~~----~~g~l~~~l~~~~a~~~l~~ 75 (366)
+|-=|+.+|.+|+||..-+.||.+ + .| ++-+++..||.+||.+|=.-
T Consensus 199 SD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~ 252 (447)
T COG0527 199 SDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYL 252 (447)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHC
Confidence 678899999999999999999997 3 23 35589999999999999643
No 198
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.10 E-value=99 Score=29.51 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=67.6
Q ss_pred eEEeCCccCHHHHHHHHHHH----HHcCcCccCCHHHHHhhcC------cEEEEE------ECCeEEEEEEEeeecCCCe
Q 017739 207 GTRTAKVTDLSGIKQIIQPL----VESGALVRRTDEELLKALD------SFYVVE------REGQIIACAALFPFFKEKC 270 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~----~~~~~~~~rs~e~l~~~i~------~~~V~e------~dg~IVG~a~l~~~~d~~~ 270 (366)
.+.+++.+ ++-++|+... ...+-..+.+..++...+. .++-.. ..|++|+++.+...++ +.
T Consensus 99 ~~~~a~~s--~E~y~LyrrY~~~rH~~g~m~~~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtDvL~d-Gl 175 (253)
T COG2935 99 RVEPAEYS--EEQYELYRRYLDQRHADGGMSDMSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTDVLPD-GL 175 (253)
T ss_pred EEccCCCC--HHHHHHHHHHHHHHcccCCCCCccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeeecccC-cc
Confidence 34455444 3445555443 2234445666777665442 222233 2799999998876664 33
Q ss_pred EEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 271 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 271 ~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
.-+. .+-+|++...++|+-.+-.-+.+|++.|+..+++.-
T Consensus 176 SsVY-~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGY 215 (253)
T COG2935 176 SSVY-TFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGY 215 (253)
T ss_pred eeEE-EEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3343 467999999999999999999999999999998854
No 199
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=63.58 E-value=50 Score=32.37 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=65.1
Q ss_pred CcEEEEEECCeEEEEEEEeeecC-----CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCC--------CCEEEEEc
Q 017739 245 DSFYVVEREGQIIACAALFPFFK-----EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG--------LDMLFLLT 311 (366)
Q Consensus 245 ~~~~V~e~dg~IVG~a~l~~~~d-----~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~G--------i~~l~l~t 311 (366)
....++..-+.+|+.+.+.+..+ .-...|..+.|..=|..-|+=.-|+++++-++|+.. -..+.+++
T Consensus 169 ~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~ 248 (304)
T PF11124_consen 169 KNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLV 248 (304)
T ss_pred CcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEE
Confidence 33344444568999999987543 235678899999999999999999999987776621 12455544
Q ss_pred ------HHHHHHHHHCCCeEec-eeccch
Q 017739 312 ------TRTADWFKSRGFRECS-IEMIPE 333 (366)
Q Consensus 312 ------t~A~~fY~k~GF~~~~-~~~Lp~ 333 (366)
+......++.||+... ...+++
T Consensus 249 d~YSFD~~~~k~L~~~gF~~i~ss~~ln~ 277 (304)
T PF11124_consen 249 DVYSFDKDMKKTLKKKGFKKISSSFKLNE 277 (304)
T ss_pred EeeeccHHHHHHHHHCCCeeeecceecCC
Confidence 4778999999999988 455554
No 200
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=60.39 E-value=13 Score=37.33 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=38.4
Q ss_pred EEEEEEEeee---cCCCeEEEEEEEECccccCCcHHHHHHHHHHHHH-HHCCCCEEEEE
Q 017739 256 IIACAALFPF---FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLL 310 (366)
Q Consensus 256 IVG~a~l~~~---~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~A-r~~Gi~~l~l~ 310 (366)
++|+.+++.+ ++.-.+.|..+-+.|.||++|+|+.|++.+.... ....+--+.+.
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~DiTVE 258 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDITVE 258 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCCceeEEEec
Confidence 4666666653 3344567889999999999999999999998544 44433333333
No 201
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=60.09 E-value=22 Score=32.18 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=41.6
Q ss_pred eEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCC
Q 017739 270 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRG 322 (366)
Q Consensus 270 ~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k~G 322 (366)
.+|++-++|.|+.+|.||+..+ ..+.-..++.|+..-|-.+- .-.+.+++++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVERLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHHHh
Confidence 6789999999999999999976 57777888899998888774 3345555544
No 202
>PRK09181 aspartate kinase; Validated
Probab=59.98 E-value=16 Score=38.12 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCcccC--------CCCcccccCCHHHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGPILD--------ESGHLIRFLTLQEADSLIRQ 75 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~~~~--------~~g~l~~~l~~~~a~~~l~~ 75 (366)
+|-=|+.+|.+|+||.+-+.||.++.. ++-++++.||.+||.+|-.-
T Consensus 220 SDyTAailAa~L~A~~~~IwTDV~I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~ 274 (475)
T PRK09181 220 SEMTFSRIAVLTGADEAIIHKEYHLSSADPKLVGEDKVVPIGRTNYDVADQLANL 274 (475)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccccCCCCcCCCCCCeEcCccCHHHHHHHHHc
Confidence 678899999999999999999986432 35578889999999999643
No 203
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=59.76 E-value=11 Score=34.40 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=37.5
Q ss_pred ccccCCHHHHHHHHHHHcCCceEEEEeCCc-ccC--CCCcccccCCHHHH
Q 017739 23 AFANFSTYEVATACALAIEADKLICIIDGP-ILD--ESGHLIRFLTLQEA 69 (366)
Q Consensus 23 e~~N~~~~~vA~~~A~~l~AdKli~l~~~~-~~~--~~g~l~~~l~~~~a 69 (366)
..--+.+|.++.-+|..++|.++|+.||.+ +.+ ..|.|++++..+|-
T Consensus 112 HSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl 161 (212)
T COG2054 112 HSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDL 161 (212)
T ss_pred cceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhc
Confidence 455678999999999999999999999998 433 34568887775553
No 204
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=59.62 E-value=16 Score=40.57 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHHHHh
Q 017739 29 TYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLIRQR 76 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l~~~ 76 (366)
+|--|+.+|.+|+||.+.+.||.+ +. | ++-++++.|+.+||.+|-.-.
T Consensus 210 SD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~G 264 (810)
T PRK09466 210 SDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLA 264 (810)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcC
Confidence 688999999999999999999997 43 3 345799999999999997543
No 205
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=58.55 E-value=41 Score=27.96 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=42.4
Q ss_pred EECCeEEEEEEEeee-c----CCCeEEEEEEEECccccC-CcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 017739 251 EREGQIIACAALFPF-F----KEKCGEVAAIGVSPECRG-QGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 318 (366)
Q Consensus 251 e~dg~IVG~a~l~~~-~----d~~~~eL~~laV~P~yRG-qGiG~~LL~~l~~~Ar~~Gi~~l~l~t---t~A~~fY 318 (366)
..++..=|++.+... + ....++|..++|.+.-|| .|++..+...+.+.. -+.++..+ ....+||
T Consensus 15 y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~f----p~~L~Wrsr~~n~~n~Wy 87 (108)
T cd04266 15 IIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLDGF----PNELIWRSRKDNPVNKWY 87 (108)
T ss_pred EEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHHcC----CCceEEEeCCCCcccceE
Confidence 334455555555432 1 246799999999999997 899999999887732 12255544 2445666
No 206
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=58.36 E-value=25 Score=37.40 Aligned_cols=127 Identities=12% Similarity=0.155 Sum_probs=83.0
Q ss_pred cccceEEeCCccCHHHHHHHHHHHH-HcCcCccCC-HHHHHhh-c---------CcEEEE-EECCeEEEEEEEeeecC--
Q 017739 203 DLYEGTRTAKVTDLSGIKQIIQPLV-ESGALVRRT-DEELLKA-L---------DSFYVV-EREGQIIACAALFPFFK-- 267 (366)
Q Consensus 203 ~~~~~IR~at~~Di~~I~~Li~~~~-~~~~~~~rs-~e~l~~~-i---------~~~~V~-e~dg~IVG~a~l~~~~d-- 267 (366)
.++..|||.+..|-+.+..+..... ..+...++. ...+... + +.+.|+ +.+++|+|++.......
T Consensus 677 ~~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F 756 (891)
T KOG3698|consen 677 CMFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLF 756 (891)
T ss_pred ceeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchh
Confidence 3567899999999999999987765 444433332 2222221 1 234444 55677999877642000
Q ss_pred -------------------------------------------C--------------CeEEEEEEEECccccCCcHHHH
Q 017739 268 -------------------------------------------E--------------KCGEVAAIGVSPECRGQGQGDK 290 (366)
Q Consensus 268 -------------------------------------------~--------------~~~eL~~laV~P~yRGqGiG~~ 290 (366)
. +..-+--.+++.+.-.-|+.++
T Consensus 757 ~rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~ 836 (891)
T KOG3698|consen 757 SRNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWVETYFGMDASDAHPMKK 836 (891)
T ss_pred hhceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHHhhccccccccchHHHH
Confidence 0 0000001234445556789999
Q ss_pred HHHHHHHHHHHCCCCEEEEEcH----HHHHHHHHCCCeEecee
Q 017739 291 LLDYIEKKAASLGLDMLFLLTT----RTADWFKSRGFRECSIE 329 (366)
Q Consensus 291 LL~~l~~~Ar~~Gi~~l~l~tt----~A~~fY~k~GF~~~~~~ 329 (366)
+|+-++.-.+..|..--++.+. .-.+||.++||...+..
T Consensus 837 m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 837 MIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred HHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 9999999999999998888882 56899999999977654
No 207
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=57.12 E-value=1.5e+02 Score=29.91 Aligned_cols=115 Identities=16% Similarity=-0.051 Sum_probs=69.6
Q ss_pred CCccCHHHHHHHHHHHHHcCcCccC-CHHHHH---hhcC---cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECcccc
Q 017739 211 AKVTDLSGIKQIIQPLVESGALVRR-TDEELL---KALD---SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECR 283 (366)
Q Consensus 211 at~~Di~~I~~Li~~~~~~~~~~~r-s~e~l~---~~i~---~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yR 283 (366)
++.++++.+..++..........+. +++-+. +.+. .++++..+|++||++.+.... +..+--......++.
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~~--~~LyGRYwG~~~~~~ 287 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRGD--DTLYGRYWGCDEEIP 287 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEeC--CEEEEeeeccccccc
Confidence 3556677888888776655533333 333332 2332 356678899999999887543 344332333445555
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHHCCCeEeceec
Q 017739 284 GQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 284 GqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~A~~fY~k~GF~~~~~~~ 330 (366)
+.- -....=..+++|-++|++++...+... .=..+||+++....
T Consensus 288 ~LH-Fe~cYYq~Ie~aI~~Gl~~f~~GaqGE--HK~~RGf~P~~t~S 331 (370)
T PF04339_consen 288 FLH-FELCYYQGIEYAIEHGLRRFEPGAQGE--HKIARGFEPVPTYS 331 (370)
T ss_pred Ccc-hHHHHHHHHHHHHHcCCCEEECCcchh--HHHHcCCcccccee
Confidence 443 333445678999999999987765432 22357999886543
No 208
>PLN02551 aspartokinase
Probab=56.18 E-value=20 Score=37.78 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCc-cc--C----CCCcccccCCHHHHHHHHH
Q 017739 29 TYEVATACALAIEADKLICIIDGP-IL--D----ESGHLIRFLTLQEADSLIR 74 (366)
Q Consensus 29 ~~~vA~~~A~~l~AdKli~l~~~~-~~--~----~~g~l~~~l~~~~a~~~l~ 74 (366)
+|--|+.+|.+|+|+.+-+.||.+ +. | .+-++++.|+.+||.+|-.
T Consensus 258 SD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~ 310 (521)
T PLN02551 258 SDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAY 310 (521)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHh
Confidence 578899999999999999999987 43 3 3347999999999999964
No 209
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=51.87 E-value=7.3 Score=38.71 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=34.9
Q ss_pred cEEEEEE-CC---eEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHH
Q 017739 246 SFYVVER-EG---QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 300 (366)
Q Consensus 246 ~~~V~e~-dg---~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar 300 (366)
.|+|+.. ++ .+||+..=.... .+.-.++|+-+.|.||++|+|.-|+++--...+
T Consensus 235 lFYvl~~~~~~~~h~vGyFSKEK~S-~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 235 LFYVLTERGDTGCHLVGYFSKEKES-EQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred EEEEEEEcCCcceeeeeeechhhcc-cccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 3455544 32 255555433221 234569999999999999999999987544444
No 210
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=51.56 E-value=85 Score=30.23 Aligned_cols=103 Identities=20% Similarity=0.144 Sum_probs=70.8
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccC-CHHHHHhh---cC---cEEEEEECCeEEEEEEEeeecCCCeEEEE--EEE
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKA---LD---SFYVVEREGQIIACAALFPFFKEKCGEVA--AIG 277 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~r-s~e~l~~~---i~---~~~V~e~dg~IVG~a~l~~~~d~~~~eL~--~la 277 (366)
.++++..=.-+++.++|..+.+..+...- ..+.+.+- +. ...|+.-+|+++|+=.++......-..+. ...
T Consensus 128 ~v~~v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG 207 (264)
T PF07395_consen 128 SVRPVSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLFLNGQPCAIQLVYKVESPKWVYFDYINGG 207 (264)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCeEEEecccCc
Confidence 57787777888888888888777665432 33444333 32 34678889999999888865544433333 457
Q ss_pred ECccccCCcHHHHHH----HHHHHHHHHCCCCEEEE
Q 017739 278 VSPECRGQGQGDKLL----DYIEKKAASLGLDMLFL 309 (366)
Q Consensus 278 V~P~yRGqGiG~~LL----~~l~~~Ar~~Gi~~l~l 309 (366)
+||+++.--.|+-|| +.+.++|+++|..-.|-
T Consensus 208 ~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lrfS 243 (264)
T PF07395_consen 208 YDPECRDFSPGSILMWLNIQDAWEYCRAQGKPLRFS 243 (264)
T ss_pred cCcccccCCCccEEEEeeHHHHHHHHHHhCCceEEE
Confidence 899999999999886 55566777776655443
No 211
>PHA02769 hypothetical protein; Provisional
Probab=47.19 E-value=15 Score=30.95 Aligned_cols=43 Identities=23% Similarity=0.538 Sum_probs=31.3
Q ss_pred HHHHHHHHHHH---HHHHCCCCEEEEEc--HHHHHHHHHCCCeEecee
Q 017739 287 QGDKLLDYIEK---KAASLGLDMLFLLT--TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 287 iG~~LL~~l~~---~Ar~~Gi~~l~l~t--t~A~~fY~k~GF~~~~~~ 329 (366)
-|.-|+.++.. +.++.|+..++.+- ..+..+|.|.||+.++..
T Consensus 93 pgd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~t 140 (154)
T PHA02769 93 PGDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQT 140 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhccc
Confidence 35666665554 45667887777665 478899999999998865
No 212
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=43.96 E-value=76 Score=25.88 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 017739 253 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 318 (366)
Q Consensus 253 dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t---t~A~~fY 318 (366)
++..=|++.+. .+.+..++|..++|.+.-++.|++..+...+.+.. ..++..+ .+...||
T Consensus 17 de~y~~~AIvt-~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 79 (98)
T cd03173 17 DEPLEGVAIVT-YEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF-----PSLLWRVRENDANLKWY 79 (98)
T ss_pred cCCccEEEEEe-cCCCCCEEEEEEEEcccccccCHHHHHHHHHHhhC-----CeeEEEeCCCCCccceE
Confidence 44444444444 23347899999999999999999999999877663 3555544 2445565
No 213
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=43.87 E-value=1.4e+02 Score=28.51 Aligned_cols=31 Identities=26% Similarity=0.174 Sum_probs=26.5
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHH
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~A 299 (366)
-..-|..+.|.+-.|++|+++.|++-+...-
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhh
Confidence 3456889999999999999999999877655
No 214
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=43.75 E-value=1e+02 Score=30.64 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=76.9
Q ss_pred ceEEeCCccCHHHHHHHHHHHHHcCcC-ccCCHHHHHhhcC------------cEEEEEECCeEEEEEEEeeec------
Q 017739 206 EGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALD------------SFYVVEREGQIIACAALFPFF------ 266 (366)
Q Consensus 206 ~~IR~at~~Di~~I~~Li~~~~~~~~~-~~rs~e~l~~~i~------------~~~V~e~dg~IVG~a~l~~~~------ 266 (366)
.-+|++...|++++.+|+.+....-.+ ...+.|++..++. .+.|-+-+|+|-++.+++..+
T Consensus 259 ~GlR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n 338 (451)
T COG5092 259 EGLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIEN 338 (451)
T ss_pred cccchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecC
Confidence 569999999999999999776444322 3334555554431 223445589999998887543
Q ss_pred ----CCCeEEEEEEEECccccCCc---------HHHHHHHHHHHHHHHCCCCEEEEEcH-HHHHHHHHCCCeEec
Q 017739 267 ----KEKCGEVAAIGVSPECRGQG---------QGDKLLDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECS 327 (366)
Q Consensus 267 ----d~~~~eL~~laV~P~yRGqG---------iG~~LL~~l~~~Ar~~Gi~~l~l~tt-~A~~fY~k~GF~~~~ 327 (366)
+-+.+++...+.+..+..-. .-..|+..++-.|+..|+....++|. ...-|...++|-+.+
T Consensus 339 ~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~Gd 413 (451)
T COG5092 339 KKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCGD 413 (451)
T ss_pred ccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccCCC
Confidence 22567787777666443311 12344555666777888877666663 334466778888765
No 215
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=43.43 E-value=2.3e+02 Score=24.94 Aligned_cols=120 Identities=15% Similarity=0.125 Sum_probs=65.5
Q ss_pred eEEeCCccCHHHHHHHHHHHHH---cCc----------CccCCHHHH--HhhcCcEEEEE-ECCeEEEEEEEeeecC--C
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVE---SGA----------LVRRTDEEL--LKALDSFYVVE-REGQIIACAALFPFFK--E 268 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~---~~~----------~~~rs~e~l--~~~i~~~~V~e-~dg~IVG~a~l~~~~d--~ 268 (366)
..|+.++.|++.+..+-..... ..+ ..+-+...+ .....+.|++. .++.+.|++.....+. .
T Consensus 2 ~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQGdr 81 (161)
T PF09390_consen 2 RYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQGDR 81 (161)
T ss_dssp EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE-SSS
T ss_pred cccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhcCCC
Confidence 5789999999999888221100 001 111233332 23345778887 8899999988776543 3
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEcHH-HHHHHHHCCCeEec
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTR-TADWFKSRGFRECS 327 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~tt~-A~~fY~k~GF~~~~ 327 (366)
....+..+.++|.- ....-.-||..+.+-|-..|+..+.+..+. ...--+..||...+
T Consensus 82 ptVlV~ri~~~~~~-~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 82 PTVLVRRILLAPGE-PEEVYEGLLRAVVKSAYDAGVYEVHLHLDPELEAAARAEGFRLGG 140 (161)
T ss_dssp EEEEEEEE---EES-SHHHHHHHHHHHHHHHHHTT-SEEEE---THHHHHHHHTT----S
T ss_pred ceEEEEEeecCCCC-cHHHHHHHHHHHHHhhhccceEEEEeeCCHHHHHHHhhcccccCC
Confidence 45666677666653 568888999999999999999988877753 33445667887654
No 216
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=41.89 E-value=1e+02 Score=32.68 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=53.4
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 246 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 246 ~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
...+...+|+|+|++.+.+.......-++-+--+|+.- +|.-..|+..++.++|++|++++.+.-
T Consensus 394 ~va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 394 PVAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred eeeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 45567788999999999986655566676677777774 799999999999999999999987654
No 217
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=40.16 E-value=1.5e+02 Score=29.01 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=67.2
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcCccC---CHHHHHhhc---C---cEEEEEECCeEEEEEEEeeecCCCeEEEE--E
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGALVRR---TDEELLKAL---D---SFYVVEREGQIIACAALFPFFKEKCGEVA--A 275 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~~~r---s~e~l~~~i---~---~~~V~e~dg~IVG~a~l~~~~d~~~~eL~--~ 275 (366)
.+|++..=--+++..++..+.+..+-... ..+.+.+-+ . ...|+.-||+++|+-.+.......-..++ .
T Consensus 156 ~v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLfl~~~PcA~qlv~k~eSp~wi~~D~iN 235 (298)
T PRK15312 156 SVKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILYIEGIPCAFDIVLKSESQMNVYFDVPN 235 (298)
T ss_pred EEEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCcEEEeccc
Confidence 47777777777888888888776665333 355554433 2 34688899999999888765443322222 4
Q ss_pred EEECccccCCcHHHHHH----HHHHHHHHHCCCCEEE
Q 017739 276 IGVSPECRGQGQGDKLL----DYIEKKAASLGLDMLF 308 (366)
Q Consensus 276 laV~P~yRGqGiG~~LL----~~l~~~Ar~~Gi~~l~ 308 (366)
..+||+++.--.|+-|+ +.+-++|+++|.+-.|
T Consensus 236 gG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~~K~lrf 272 (298)
T PRK15312 236 GAVKNECMPLSPGSILMWLNISRARHYCQERQKKLIF 272 (298)
T ss_pred CccCcccccCCCccEEEEecHHHHHHHHHhcCCcEEE
Confidence 57999999999998886 3444455555544433
No 218
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.33 E-value=70 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=27.6
Q ss_pred HHHHHHHCCCCEEEEEc-------HHHHHHHHHCCCeEecee
Q 017739 295 IEKKAASLGLDMLFLLT-------TRTADWFKSRGFRECSIE 329 (366)
Q Consensus 295 l~~~Ar~~Gi~~l~l~t-------t~A~~fY~k~GF~~~~~~ 329 (366)
+.+-.+..|++++.++| .+...||+++||+.++..
T Consensus 109 vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 109 VVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEee
Confidence 34445667899999998 267899999999998743
No 219
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=35.78 E-value=83 Score=27.92 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCCEEEEEc--------HHHHHHHHHCCCeEece
Q 017739 292 LDYIEKKAASLGLDMLFLLT--------TRTADWFKSRGFRECSI 328 (366)
Q Consensus 292 L~~l~~~Ar~~Gi~~l~l~t--------t~A~~fY~k~GF~~~~~ 328 (366)
++.+++.|++.|+++|-+.. ..-.++++..||+..++
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 56788899999999998766 13467888999998874
No 220
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=35.19 E-value=2.1e+02 Score=33.25 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=46.7
Q ss_pred EECCeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 251 EREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 251 e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
+.+|+|+|++.+.+.. .+...++-+--+|+. =.|+-..|+-.++.+++++|++.+.+.-
T Consensus 427 d~~G~i~af~s~~p~~-~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~ 485 (1094)
T PRK02983 427 DADGQVVALLSFVPWG-RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNF 485 (1094)
T ss_pred CCCCeEEEEEEEeeeC-CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEech
Confidence 3479999999999865 334556544445665 6899999999999999999999998755
No 221
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.86 E-value=5e+02 Score=26.31 Aligned_cols=56 Identities=16% Similarity=-0.136 Sum_probs=38.7
Q ss_pred CeEEEEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 254 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 254 g~IVG~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
+.+++.+.+..+. +.++.-.-+.+++|+.-+-.-.|...++++|+++|++..-..-
T Consensus 302 ~~~la~~l~~~~g--~~~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~G 357 (406)
T PF02388_consen 302 EIPLAGALFIYYG--DEAYYLYGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFGG 357 (406)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred cceEEEEEEEEEC--CEEEEEECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEeeC
Confidence 3455555555333 3443335689999999998888889999999999999875533
No 222
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=34.82 E-value=1.4e+02 Score=24.37 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=32.2
Q ss_pred EEEEEeeecCCCeEEEEEEEECccccCCcHHHHHHHHHHHHH
Q 017739 258 ACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 299 (366)
Q Consensus 258 G~a~l~~~~d~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~A 299 (366)
.++++...+++..++|..++|..+-++.|++..+...+.+.-
T Consensus 21 ~a~AIV~~~~~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d~ 62 (98)
T cd04263 21 EVLAIVLPPSGEVATLATFTITKSGWLNNVADNIFTAIKKDH 62 (98)
T ss_pred cEEEEEecCCCCCEEEEEEEEccccccccHHHHHHHHHHhhC
Confidence 333333233367899999999999999999999999877653
No 223
>PHA00432 internal virion protein A
Probab=34.28 E-value=88 Score=27.15 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=53.2
Q ss_pred eEEeCCccCHHHHHHHHHHH--HHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECcc---
Q 017739 207 GTRTAKVTDLSGIKQIIQPL--VESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE--- 281 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~--~~~~~~~~rs~e~l~~~i~~~~V~e~dg~IVG~a~l~~~~d~~~~eL~~laV~P~--- 281 (366)
.|||+|.+|+..+ ++-..- +-.+.-.... ...-..++....+|.+++.+.= ....+..+..-+|..-
T Consensus 2 ~I~paT~~di~~~-~lr~~D~~E~~a~g~~~~----~~~s~~~~~~~~~G~~~aI~Gn---~G~~vW~v~T~~v~~~~~~ 73 (137)
T PHA00432 2 YIRQTTERDFDVF-NPSFEDILEAKAYGIEPS----FPPDSECVTLSLDGFVLAIGGN---QGDQVWFVTSDQVWRLTKK 73 (137)
T ss_pred ccccccHHHHHHc-CCCHHHHHHHHhcCCCCC----CCCCceEEEEecCCeEEEEecC---CCCceEEEecHHhhhCChh
Confidence 4888888888877 332111 0011000000 0012356777889999887731 1112233333333331
Q ss_pred ccCCcHHHHHHHHHHHHHHHCCCCEE----EEEcHHHHHHHHHCCCeEece
Q 017739 282 CRGQGQGDKLLDYIEKKAASLGLDML----FLLTTRTADWFKSRGFRECSI 328 (366)
Q Consensus 282 yRGqGiG~~LL~~l~~~Ar~~Gi~~l----~l~tt~A~~fY~k~GF~~~~~ 328 (366)
+| +..-+.++.+ .+...+. +..+ ......+.+|.+.+||+-...
T Consensus 74 ~~-reF~k~~~~~-ld~ml~~-yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 74 EK-REFRKLIMEY-RDMMLDQ-YPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hh-HHHHHHHHHH-HHHHHHh-hhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 22 2222223333 3333222 3333 233368999999999997654
No 224
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=32.86 E-value=1e+02 Score=29.09 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEc-------HHHHHHHHHCCCeEeceec
Q 017739 291 LLDYIEKKAASLGLDMLFLLT-------TRTADWFKSRGFRECSIEM 330 (366)
Q Consensus 291 LL~~l~~~Ar~~Gi~~l~l~t-------t~A~~fY~k~GF~~~~~~~ 330 (366)
-...+.+-.+..|+++|.+.| .+...||++.||+......
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~ 153 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTC 153 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeec
Confidence 344566667888999999999 2668999999999987643
No 225
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.29 E-value=1.4e+02 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=21.3
Q ss_pred CCEEEEEc---HHHHHHHHHCCCeEeceeccch
Q 017739 304 LDMLFLLT---TRTADWFKSRGFRECSIEMIPE 333 (366)
Q Consensus 304 i~~l~l~t---t~A~~fY~k~GF~~~~~~~Lp~ 333 (366)
+..+-+.+ .++.+||+++||+......++.
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~ 36 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLELGLELEGRAEIEG 36 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHHcCCEEccccccCh
Confidence 44555555 5899999999998876554443
No 226
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=31.79 E-value=3.3e+02 Score=27.56 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=57.4
Q ss_pred cEEEEEECCeEEEEEEEeeecC--C------------------CeEE-----------EEEEEECccccCCcHHHHHHHH
Q 017739 246 SFYVVEREGQIIACAALFPFFK--E------------------KCGE-----------VAAIGVSPECRGQGQGDKLLDY 294 (366)
Q Consensus 246 ~~~V~e~dg~IVG~a~l~~~~d--~------------------~~~e-----------L~~laV~P~yRGqGiG~~LL~~ 294 (366)
..+++.++|++||.+-++.-.. + -++- =..+-++|......+...|++.
T Consensus 45 ~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~ 124 (370)
T PF04339_consen 45 RHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQA 124 (370)
T ss_pred eEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHH
Confidence 5677888899999887763110 0 0000 0156788888888899999999
Q ss_pred HHHHHHHCCCCEEEEEc--HHHHHHHHHCCCeEe
Q 017739 295 IEKKAASLGLDMLFLLT--TRTADWFKSRGFREC 326 (366)
Q Consensus 295 l~~~Ar~~Gi~~l~l~t--t~A~~fY~k~GF~~~ 326 (366)
+.+.+++.|+..+-++- .......+..||..-
T Consensus 125 ~~~~a~~~~~Ss~h~lF~~~~~~~~l~~~G~~~r 158 (370)
T PF04339_consen 125 LEQLAEENGLSSWHILFPDEEDAAALEEAGFLSR 158 (370)
T ss_pred HHHHHHHcCCCcceeecCCHHHHHHHHhCCCcee
Confidence 99999999988775443 344566778888765
No 227
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=29.58 E-value=2.2e+02 Score=28.32 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=63.7
Q ss_pred eEEeCCccCHHHHHHHHHHHHHcCcC----ccCCHHHHHhhcC------c-EEEEEECC--eEEEEEEEeeec------C
Q 017739 207 GTRTAKVTDLSGIKQIIQPLVESGAL----VRRTDEELLKALD------S-FYVVEREG--QIIACAALFPFF------K 267 (366)
Q Consensus 207 ~IR~at~~Di~~I~~Li~~~~~~~~~----~~rs~e~l~~~i~------~-~~V~e~dg--~IVG~a~l~~~~------d 267 (366)
.|..+....++++..++.+..-.... ...+.|-+.-.+. . .+++...+ ++||++...|.. .
T Consensus 83 ~idv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~ 162 (451)
T COG5092 83 VIDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKR 162 (451)
T ss_pred eEeccccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccc
Confidence 35556666777777777654332221 1122222222221 2 23333344 899998877632 1
Q ss_pred CCeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCE
Q 017739 268 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 306 (366)
Q Consensus 268 ~~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~ 306 (366)
..+.++.-++||.+.|++-+.--|++.+-.+|...|+.+
T Consensus 163 ~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~ 201 (451)
T COG5092 163 SSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIWR 201 (451)
T ss_pred cccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhHH
Confidence 257889999999999999999999999999997666543
No 228
>PRK00756 acyltransferase NodA; Provisional
Probab=28.71 E-value=1.3e+02 Score=27.24 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=35.1
Q ss_pred CeEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 017739 269 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 311 (366)
Q Consensus 269 ~~~eL~~laV~P~yRGqGiG~~LL~~l~~~Ar~~Gi~~l~l~t 311 (366)
-.+|++-++|.|+..|.||+..+ ..+.-..++.|+..-|-.+
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtV 125 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTV 125 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccc
Confidence 36889999999999999999877 5677777888888877666
No 229
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=28.08 E-value=77 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHcCCc-eEEEEeCC
Q 017739 26 NFSTYEVATACALAIEAD-KLICIIDG 51 (366)
Q Consensus 26 N~~~~~vA~~~A~~l~Ad-Kli~l~~~ 51 (366)
+.++++|..+++.||..+ +++-|+|.
T Consensus 19 ~~s~dev~~~v~~Al~~~~~~l~LtD~ 45 (74)
T PF11305_consen 19 DQSADEVEAAVTDALADGSGVLTLTDE 45 (74)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEeC
Confidence 678999999999999999 88888653
No 230
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.54 E-value=3.2e+02 Score=27.72 Aligned_cols=118 Identities=19% Similarity=0.090 Sum_probs=60.5
Q ss_pred CcCccCCHHHHHhhc---CcEEEEEEC-CeEEEEEEEeeecCCCeEEEEEEEECc--cccCCcHHHHHHHHHHHHHHHCC
Q 017739 230 GALVRRTDEELLKAL---DSFYVVERE-GQIIACAALFPFFKEKCGEVAAIGVSP--ECRGQGQGDKLLDYIEKKAASLG 303 (366)
Q Consensus 230 ~~~~~rs~e~l~~~i---~~~~V~e~d-g~IVG~a~l~~~~d~~~~eL~~laV~P--~yRGqGiG~~LL~~l~~~Ar~~G 303 (366)
.++..+.+..+...- ..++.+..+ +.++|.+.+....-.....+..+-==| +|...-+-..+++.+.+++++.+
T Consensus 17 ~flQs~~wa~vk~~~gw~~~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~~ 96 (406)
T PF02388_consen 17 NFLQSSEWAEVKEKRGWEVERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKKR 96 (406)
T ss_dssp -CCCSHHHHHHCHHTTSEEEEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTTT
T ss_pred CcchHHHHHHHHHHCCCeEEEEEEEeCCCeEEEEEEEEEeccCCceeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344444455555322 244555555 666665544432211111122222224 78888888999999999998876
Q ss_pred CCEEEEEc-------------------HHHHHHHHHCCCeEeceeccchHHHhhhcC-CCCceeEEEecCC
Q 017739 304 LDMLFLLT-------------------TRTADWFKSRGFRECSIEMIPEERRKRINL-SRNSKYYMKKLLP 354 (366)
Q Consensus 304 i~~l~l~t-------------------t~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~-~r~s~vl~k~l~~ 354 (366)
+-.|.+.. ......|+++||...+... .|.. ....-.+++.|.+
T Consensus 97 a~~lridP~~~~~~~~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~-------~~~~~~qpr~~~v~dL~~ 160 (406)
T PF02388_consen 97 ALFLRIDPNVIYQERDEDGEPIEGEENDELIENLKALGFRHQGFTK-------GYDDTIQPRWTYVKDLTG 160 (406)
T ss_dssp EEEEEE--S-EEECE-TTS-EEEE-S-THHHHHHHHTT-CCTS-SS-------STTSSSS-SEEEEEEGCC
T ss_pred EEEEEEeCchhhhhcccccccccCcchHHHHHHHHhcCceecCccc-------CCCcccCccEEEEEECCC
Confidence 55554433 1346889999999877553 2222 2344567777766
No 231
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=23.20 E-value=2.6e+02 Score=23.01 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEc-------HHHHHHHHHCCCeEeceeccchHHHhhhcCCCC
Q 017739 289 DKLLDYIEKKAASLGLDMLFLLT-------TRTADWFKSRGFRECSIEMIPEERRKRINLSRN 344 (366)
Q Consensus 289 ~~LL~~l~~~Ar~~Gi~~l~l~t-------t~A~~fY~k~GF~~~~~~~Lp~~r~~~Y~~~r~ 344 (366)
..+.+.+.+.+++.|++.+.+.. ..+.+-+.+.|+....+.+..+ -.+|.+|.
T Consensus 46 ~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~T~---iphnGcR~ 105 (110)
T PF00411_consen 46 QQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDVTP---IPHNGCRP 105 (110)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEETT-----SSSS--
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEeecC---CCCCCCCC
Confidence 35567788899999999988877 3677888899999888766543 23455554
No 232
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=22.55 E-value=1e+02 Score=24.50 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.2
Q ss_pred HHHHHHHHHCCCeEe
Q 017739 312 TRTADWFKSRGFREC 326 (366)
Q Consensus 312 t~A~~fY~k~GF~~~ 326 (366)
.+|.+||+++||+..
T Consensus 12 ~~a~~FY~~LGf~~~ 26 (122)
T cd07235 12 AKSLDFYRRLGFDFP 26 (122)
T ss_pred HHHHHHHHHhCceec
Confidence 589999999999864
Done!