BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017740
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/312 (58%), Positives = 223/312 (71%), Gaps = 1/312 (0%)
Query: 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 97
EP RVLVTGA GQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query: 98 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 157
PLLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A
Sbjct: 63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122
Query: 158 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 217
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVI
Sbjct: 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182
Query: 218 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXX 277
IWGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARK
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query: 278 XXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKG 336
CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+G
Sbjct: 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 302
Query: 337 LKVDEFSRAKMD 348
L +++FSR KMD
Sbjct: 303 LPINDFSREKMD 314
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/312 (58%), Positives = 223/312 (71%), Gaps = 1/312 (0%)
Query: 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 97
EP RVLVTGA GQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 98 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 157
PLLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A
Sbjct: 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 158 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 217
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVI
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181
Query: 218 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXX 277
IWGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARK
Sbjct: 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
Query: 278 XXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKG 336
CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+G
Sbjct: 242 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 301
Query: 337 LKVDEFSRAKMD 348
L +++FSR KMD
Sbjct: 302 LPINDFSREKMD 313
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 317 bits (811), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 161/312 (51%), Positives = 206/312 (66%), Gaps = 5/312 (1%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 96
K P RV VTGA GQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 276
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 277 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 336
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 337 LKVDEFSRAKMD 348
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/312 (51%), Positives = 206/312 (66%), Gaps = 5/312 (1%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 96
K P RV VTGA GQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 276
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 277 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 336
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 337 LKVDEFSRAKMD 348
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 314 bits (805), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 160/312 (51%), Positives = 205/312 (65%), Gaps = 5/312 (1%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 96
K P RV VTGA GQIGY+L+ IA G MLG DQPVIL +L E + +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 276
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 277 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 336
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 337 LKVDEFSRAKMD 348
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 313 bits (803), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 160/312 (51%), Positives = 205/312 (65%), Gaps = 5/312 (1%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 96
K P RV VTGA GQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 276
+WGNHSS +PD+ HA V +P E V D W FI TV QRGAAII+AR
Sbjct: 182 TVWGNHSSIMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 277 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 336
+HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 337 LKVDEFSRAKMD 348
L+++EF+R +M+
Sbjct: 297 LEINEFARKRME 308
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/298 (53%), Positives = 201/298 (67%), Gaps = 7/298 (2%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+V VTGA GQIGYALVP+IARG +LGP PV L +LDIEPA +AL GV+ EL D AFPLL
Sbjct: 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLL 85
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
VV T D A V IA+M G FPRK GMERKD++ N I+K Q A+ AA +C+
Sbjct: 86 DKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCR 145
Query: 161 VLVVANPANTNALI-LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIW 219
V+VV NPANTNALI LK + +++T +TRLDHNRA+ ++ + V VS V+NVIIW
Sbjct: 146 VVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIW 205
Query: 220 GNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXX 279
GNHSSTQ PD + A + T+ P REA+ DD L+ +F+ V+ RGA II+ R
Sbjct: 206 GNHSSTQVPDTDSAVIGTT----PAREAIKDDA-LDDDFVQVVRGRGAEIIQLRGLSSAM 260
Query: 280 XXXXXXCDHIRDWVLGTPKGTWVSMGVYSD-GSYGIPEGLIYSFPVTCEKGEWSIVKG 336
DH+ DW+ GTP+G +VSMGVYSD YG+P GLI+SFP TC GEW++V G
Sbjct: 261 SAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSG 318
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 310 bits (795), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/308 (51%), Positives = 205/308 (66%), Gaps = 5/308 (1%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
RV VTGA GQI Y+L+ IA G +LG DQPVIL +LD+ A A+ GV MEL D AFPLL
Sbjct: 11 RVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLL 70
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
GVV T D A KD ++A++VG PR +GMERKD++S N I+ Q +AL + A+ + K
Sbjct: 71 AGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVK 130
Query: 161 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG 220
VLVV NPANTNA I + AP +P KN T + RLDHNRA+ Q++ + V+ ++ + +WG
Sbjct: 131 VLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWG 190
Query: 221 NHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXX 280
NHS T YPD A T++GE ++ + DD W FI TV +RGAAII+AR
Sbjct: 191 NHSPTMYPDFRFA---TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAAS 246
Query: 281 XXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVD 340
DH+RDWVLGT G WV+MG+ SDGSYGIPE +IY PV CE GE+ V+GL++D
Sbjct: 247 AANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEID 305
Query: 341 EFSRAKMD 348
FSR KMD
Sbjct: 306 AFSREKMD 313
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/314 (50%), Positives = 205/314 (65%), Gaps = 7/314 (2%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI--EPAAEALNGVKMELID 94
K P RV VTGA GQI Y+L+ IA G MLG DQPVIL +L+I E A +AL GV ME+ D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 95 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 154
AFPLL G+ A D + A KD ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 155 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 214
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRA+ QI+ + VS ++
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 215 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 274
+ +WGNHS T Y D +A + + V++ + DD W F+ TV +RGAAII AR
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDARG 238
Query: 275 XXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 334
DHI DWVLGT G W +MG+ SDGSYGIPEG+I+ FPVT E GE+ IV
Sbjct: 239 VSSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIV 297
Query: 335 KGLKVDEFSRAKMD 348
+GL +D FS+ +++
Sbjct: 298 QGLSIDAFSQERIN 311
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 181/334 (54%), Gaps = 10/334 (2%)
Query: 16 LFCVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHM 75
+FC+ K S+ K+ V V+GA G I L+ +A G + GPDQP+ L +
Sbjct: 23 VFCLTYDLKAEEETKSW----KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKL 78
Query: 76 LDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKD 135
L E + AL GV MEL D+ +PLL+ V D E +D A+++G PR GMER D
Sbjct: 79 LGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERAD 138
Query: 136 VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDH 195
++ N I+ Q AL A+PN KV+VV NP NTNALI + AP+IP KN LTRLD
Sbjct: 139 LLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDE 198
Query: 196 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLN 255
NRA Q++ + V V NV IWGNHS+TQ PD +A + PV E + D WL
Sbjct: 199 NRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGI----PVTEVIRDRKWLE 254
Query: 256 TEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGS-YGI 314
EF VQ RG +IK D IR V TP+G W S GVY++G+ YGI
Sbjct: 255 DEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGI 314
Query: 315 PEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKM 347
E +++S P + G++ VK + D++ K+
Sbjct: 315 AEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKI 348
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 174/308 (56%), Gaps = 6/308 (1%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 96
K+ + V+GA G I L+ +A G + G DQP+ L +L E + +AL GV MEL D+
Sbjct: 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL 89
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
+PLL+ V D E +DV+ A+++G PR GMER ++ N I+ Q AL A+
Sbjct: 90 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ + V V NV
Sbjct: 150 KNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 209
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXX 276
IWGNHS+TQ PD +A + +PV+E + WL EF TVQ+RG A+I+
Sbjct: 210 TIWGNHSTTQVPDFLNAKIDG----RPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRS 265
Query: 277 XXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIV 334
D I+ V TP+G W S GVY+ G+ YGI E +++S P + G++ +
Sbjct: 266 SAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELA 325
Query: 335 KGLKVDEF 342
+ D+F
Sbjct: 326 TDVSNDDF 333
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 22/272 (8%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
++ + GA G IG + A + L P+ L + D P A L GV E+ F L
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAM-MRLTPN----LCLYD--PFAVGLEGVAEEIRHCGFEGL 62
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
+ T+D+ EA D V GG PRKEGM R+D++ N I AQ K P+CK
Sbjct: 63 N-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEI-AAQLGKDIKSYCPDCK 120
Query: 161 -VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIW 219
V+++ NPA+ L+ ++ P++ +T L LD R ++++ + S V N +
Sbjct: 121 HVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTY 179
Query: 220 GNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLN---TEFITTVQQRGAAIIKARKXX 276
G H + A V + P+ + + D N E V + GA IIK R
Sbjct: 180 GGHGEQMAVFASTAKVNGT----PLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRS 235
Query: 277 XXXXXXXXXCDHIRDWVLGT----PKGTWVSM 304
+ IR + G P G +V++
Sbjct: 236 SFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNV 267
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 112 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 171
A + ++ ++ G PRK GM R D++ N+ + + + ++K+ AP V+ + NP +
Sbjct: 72 AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDAM 130
Query: 172 ALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 230
L++F+ +PA + + LD R +SE V V DV V + G H + P
Sbjct: 131 VWALQKFS-GLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDV-TVFVLGGHGDSMVPLA 188
Query: 231 NHATVT 236
++TV
Sbjct: 189 RYSTVA 194
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 13/235 (5%)
Query: 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 173
+D ++ ++ G PR GM R D+++KN I +P+ ++VVANP +
Sbjct: 68 EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQF-VEGSPDSTIIVVANPLDVMTY 126
Query: 174 ILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
+ E A P + + LD R I+E L V V DV+ ++ G H T P +
Sbjct: 127 VAYE-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQ-ALLMGGHGDTMVPLPRY 184
Query: 233 ATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDW 292
TV G PV + + D+ E + + G I+ + + +
Sbjct: 185 TTV----GGIPVPQLI--DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAE-MTEA 237
Query: 293 VLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 347
+L K + Y DG YG+ + L PV G V + +D +A++
Sbjct: 238 ILKDNK-RILPCAAYCDGEYGLDD-LFIGVPVKLGAGGVEEVIEVDLDADEKAQL 290
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 37/247 (14%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAFP 98
+V + GA+G++G A ++A+ +P + L ++ E + L G++ ++ DA
Sbjct: 2 KVTIIGASGRVGSATALLLAK-------EPFMKDLVLIGREHSINKLEGLREDIYDA--- 51
Query: 99 LLKGVVATTDV-VEACKDV------NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASAL 151
L G + ++ VE+ +++ ++ ++ G PRKEGM R D+ N I A
Sbjct: 52 -LAGTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYA--- 107
Query: 152 EKHAAPNC--KVLVVANPANT---NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 206
K A C K+ V+ NP + AL+ +F + + T LD R I++
Sbjct: 108 -KKIAEICDTKIFVITNPVDVMTYKALVDSKFERN---QVFGLGTHLDSLRFKVAIAKFF 163
Query: 207 KVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRG 266
VH+ +V+ II G H + P ++ TS G P+++ E I V+ +G
Sbjct: 164 GVHIDEVRTRII-GEHGDSMVPLLS----ATSIGGIPIQKFERFKELPIDEIIEDVKTKG 218
Query: 267 AAIIKAR 273
II+ +
Sbjct: 219 EQIIRLK 225
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 174
D +I ++ G PRK GM R+D++ KN I K + KH+ N ++VV+NP + I
Sbjct: 69 DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----I 123
Query: 175 LKEFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 230
+ A +P + + + LD R I+ L V + D+ N + G H P V
Sbjct: 124 MTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVV 182
Query: 231 NHATV 235
+ TV
Sbjct: 183 KYTTV 187
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 3/220 (1%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV 163
V T+ + ++ ++ ++ G PRK G R D++ N+ + + + KH PN V+
Sbjct: 62 VRGTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGI-KHNCPNAFVIC 120
Query: 164 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 223
+ NP + L++F+ K + LD R +++ L V V V+ + G H
Sbjct: 121 ITNPLDIXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHG 179
Query: 224 STQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXX 283
T P + V E+ V+E L+ ++ + G I+ K
Sbjct: 180 DTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDA-IVSRTRSGGGEIVALLKTGSAYYAPA 238
Query: 284 XXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP 323
+ L K G YG+ E L P
Sbjct: 239 AAGIQXAESFLKDKKXILPCAAKVKAGXYGLDEDLFVGVP 278
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176
+I V+ G PRK GM R+D++S N I + + +H + N ++VV+NP + I+
Sbjct: 71 DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEH-SKNPIIVVVSNPLD----IMT 125
Query: 177 EFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
A +P + + + LD R I+ L V + DV + G H P V +
Sbjct: 126 HVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDV-TACVLGGHGDAMVPVVKY 184
Query: 233 ATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK-ARKXXXXXXXXXXXCDHIRD 291
TV PV + ++ + E + + GA I+ ++ + +
Sbjct: 185 TTVAGI----PVADLISAERI--AELVERTRTGGAEIVNHLKQGSAFYSPATSVVEMVES 238
Query: 292 WVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDE 341
VL + ++ V DG YGI +G PV K + +K+D+
Sbjct: 239 IVLDRKR--VLTCAVSLDGQYGI-DGTFVGVPVKLGKNGVEHIYEIKLDQ 285
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176
+I ++ G PRK GM R+D++ KN I K + KH+ N ++VV+NP + I+
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLD----IMT 125
Query: 177 EFA---PSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
A +P + + + LD R I+ L V + D+ N + G H P V +
Sbjct: 126 HVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGDAMVPVVKY 184
Query: 233 ATV 235
TV
Sbjct: 185 TTV 187
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170
E ++ ++ ++ G PRK M R D+++ N I + A + K+ PN V+ + NP +
Sbjct: 78 EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVICITNPLDA 136
Query: 171 NALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPD 229
KE IPA + ++ LD R +S L V SDV +++ G H P
Sbjct: 137 MVYYFKE-KSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG-HGDEMIPL 194
Query: 230 VNHATV 235
+ T+
Sbjct: 195 TSSVTI 200
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 31/240 (12%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELID-AAF 97
+V V GA+G IG L +L + P++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLS-------LLLKNSPLVSRLTLYDIAHTP----GVAADLSHIETR 50
Query: 98 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 157
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CP 109
Query: 158 NCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDV 213
+ + +++NP N+ A + K+ P K I +T LD RA ++E + + V
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANAFVAELKGLDPARV 168
Query: 214 KNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR 273
+I G+ T P ++ T K + P + L+T +Q+ G ++KA+
Sbjct: 169 SVPVIGGHAGKTIIPLISQC---TPKVDFP-------QDQLST-LTGRIQEAGTEVVKAK 217
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAFP 98
+V V GA+G IG L +L + P++ L + DI + AA
Sbjct: 30 KVAVLGASGGIGQPLS-------LLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAA-- 80
Query: 99 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 158
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P
Sbjct: 81 -VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPE 138
Query: 159 CKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 214
+ V+ANP N+ A + K+ P K I +T LD RA ++E + + V
Sbjct: 139 AMICVIANPVNSTIPITAEVFKKHGVYNPNK-IFGVTTLDIVRANTFVAELKGLDPARVN 197
Query: 215 NVIIWGNHSSTQYPDVNHAT 234
+I G+ T P ++ T
Sbjct: 198 VPVIGGHAGKTIIPLISQCT 217
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
++ T+D + D ++ V+ G RK GM R D+++ N I K+ + KH +PN ++
Sbjct: 67 IIGTSDYADTA-DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIV 124
Query: 163 VVANPANTNAL-ILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVIIWG 220
V+ NP + + KE P + + + LD R I++ L + V D+ ++ G
Sbjct: 125 VLTNPVDAMTYSVFKE--AGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL-G 181
Query: 221 NHSSTQYPDVNHA 233
H P V ++
Sbjct: 182 GHGDDMVPLVRYS 194
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 17/238 (7%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172
CKD ++ V+ G P+K G R D+++KN++I + + LV ANP +
Sbjct: 70 CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGI-FLVAANPVDILT 128
Query: 173 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
+F+ + I T LD +R + ++ V V + I G H +++ +
Sbjct: 129 YATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSV-DAYIMGEHGDSEFAAYST 187
Query: 233 ATVTTSKGEKPVR-----EAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCD 287
AT+ G +PVR + V+DD+ E V+ + II +
Sbjct: 188 ATI----GTRPVRDVAKEQGVSDDDLAKLE--DGVRNKAYDIINLKGATFYGIGTALM-- 239
Query: 288 HIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG-LKVDEFSR 344
I +L + + +G Y DG YG+ + I + + G I++ L DE +
Sbjct: 240 RISKAIL-RDENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIESPLSADELKK 296
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 73 LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGME 132
L M+D+ + L G M+L + L +V D + + V+ G ++EG
Sbjct: 48 LAMVDV--MEDKLKGEVMDLQHGSLFLKTKIVGDKDY-SVTANSKVVVVTAGARQQEGES 104
Query: 133 RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTR 192
R +++ +NV+I+K + K+ +PNC ++VV+NP + + + + + I T
Sbjct: 105 RLNLVQRNVNIFKFIIPNIVKY-SPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTN 163
Query: 193 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP---DVNHATVTTSKGEKPVREAVA 249
LD R I E+L +H S I+ G H + P VN A V+ +G P
Sbjct: 164 LDSARFRHLIGEKLHLHPSSCHAWIV-GEHGDSSVPVWSGVNVAGVSL-QGLNPQMGTEG 221
Query: 250 D-DNW 253
D +NW
Sbjct: 222 DGENW 226
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 173
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 233
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 234 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 293
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 294 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 348
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 173
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 233
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 234 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 293
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 294 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 348
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 173
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 233
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 234 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 293
T++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 TISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 294 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 348
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 173
KD ++ V+ G RK G R D+ KNV I K + K+ +LVV+NP +
Sbjct: 73 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGV-ILVVSNPVDIITY 131
Query: 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
++++++ K I T LD R +SE+L V V +V II G H +Q P
Sbjct: 132 MIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYII-GEHGDSQLP 185
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Query: 78 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 137
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 51 VDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLV 110
Query: 138 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 197
+NV+I+K + K+ +PNC +LVV+NP + + + + + I T LD R
Sbjct: 111 QRNVNIFKFIIPNIIKY-SPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSAR 169
Query: 198 AMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
+ E+L +H S+ +I G H + P
Sbjct: 170 FRHLMGEKLGIHPSNCHGWVI-GEHGDSSVP 199
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 18/310 (5%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 23 KITVVG-VGQVGMACAISI-----LGKSLTDELALVDV--LEDKLKGEMMDLQHGSLFLQ 74
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
+ + I V+ G ++EG R +++ +NV+++K + K+ +PNC
Sbjct: 75 TPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPNCI 133
Query: 161 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII-- 218
++VV+NP + + + + + I LD R + E+L VH S I+
Sbjct: 134 IIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGE 193
Query: 219 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 278
G+ S + VN A V + + +NW E V + +IK K
Sbjct: 194 HGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTN 250
Query: 279 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KG 336
D I + + VS V G YGI + S P V +G S++ +
Sbjct: 251 WAIGLSVADLIESMLKNLSRIHPVSTMV--QGMYGIENEVFLSLPCVLNARGLTSVINQK 308
Query: 337 LKVDEFSRAK 346
LK DE ++ K
Sbjct: 309 LKDDEVAQLK 318
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 16/235 (6%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKA---QASALEKHAAPNCKVLVVANPANTNAL 173
++ V+ G PRK GM R+D++ N I +A QA+ L +PN +++V NP +
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL----SPNAVIIMVNNPLDAMTY 127
Query: 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 233
+ E + + I LD R I+ V V DV+ ++ G H P +
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQ-AMLMGGHGDEMVPLPRFS 186
Query: 234 TVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWV 293
++ PV E +A D + + ++ G I+ K + + V
Sbjct: 187 CISGI----PVSEFIAPDRL--AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAV 240
Query: 294 LGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMD 348
L K + + Y G YG+ + + + PV G + L ++E A ++
Sbjct: 241 LKDKK-RVMPVAAYLTGQYGLND-IYFGVPVILGAGGVEKILELPLNEEEMALLN 293
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 83 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 142
+ L G M+L + L + + + + V+ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVN 115
Query: 143 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 202
I+K + K++ PNCK+LVV+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNIVKYS-PNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 203 SERLKVHVSDVKNVIIWGNHSSTQYP 228
ERL VH I+ G H + P
Sbjct: 175 GERLGVHPLSCHGWIL-GEHGDSSVP 199
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 10/239 (4%)
Query: 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170
E CKD +I + G +K G R +++ KN+ I+K S + + + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMA-SGFDGIFLVATNPVDI 127
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 230
+F+ + I T LD R +SE +V II G H T+ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHII-GEHGDTELPVW 186
Query: 231 NHATVTTSKGEKPVREAVADDNWLNTEFITTV--QQRGAAIIKARKXXXXXXXXXXXCDH 288
+HA V G PV E V ++ E + + + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 289 IRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 347
I +L + + +++ Y DG YG + I P +G + + L ++E + +
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 12/209 (5%)
Query: 20 ALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79
AL ++I ++ +P+ V+ GA G M +L D L ++D+
Sbjct: 2 ALKDQLIHNLLKEEHVPQNKITVVGVGAVG--------MACAISILMKDLADELALVDV- 52
Query: 80 PAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSK 139
+ L G M+L + L + + + + ++ G ++EG R +++ +
Sbjct: 53 -MEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQR 111
Query: 140 NVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAM 199
NV+I+K + K++ P+CK+LVV+NP + + + + + I LD R
Sbjct: 112 NVNIFKFIIPNVVKYS-PHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFR 170
Query: 200 GQISERLKVHVSDVKNVIIWGNHSSTQYP 228
+ ERL VH I+ G H + P
Sbjct: 171 YLMGERLGVHALSCHGWIL-GEHGDSSVP 198
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 83 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 142
+ L G M+L + L + + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 143 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 202
I+K + K++ PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKYS-PNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 203 SERLKVHVSDVKNVIIWGNHSSTQYP 228
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 83 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 142
+ L G M+L + L + + + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 143 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 202
I+K + K++ PNCK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKYS-PNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 203 SERLKVHVSDVKNVIIWGNHSSTQYP 228
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 17/194 (8%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL- 99
+V V GA G IG AL ++ + G D L + DI P GV +L + P
Sbjct: 5 KVAVIGAAGGIGQALALLLKNRLPAGSD----LALYDIAPVTP---GVAADL--SHIPTH 55
Query: 100 --LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 157
+KG A D A + ++ ++ G RK G +R D+ + N I K+ A + P
Sbjct: 56 VSIKGY-AGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERI-AVVCP 113
Query: 158 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 214
N + ++ NP NT I E A + + +T LD R+ ++E +V+
Sbjct: 114 NACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVR 173
Query: 215 NVIIWGNHSSTQYP 228
+I G+ T P
Sbjct: 174 VPVIGGHSGVTILP 187
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 18/310 (5%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 22 KITVVG-VGQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
+ + I V+ G ++EG R +++ +NV+++K + K+ +P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 161 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII-- 218
++VV+NP + + + + + I LD R ++E+L +H S I+
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 219 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 278
G+ S + VN A V+ + + +NW E V + +IK K
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTN 249
Query: 279 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KG 336
D I + + VS V G YGI + S P + +G S++ +
Sbjct: 250 WAIGLSVADLIESMLKNLSRIHPVSTMV--KGMYGIENEVFLSLPCILNARGLTSVINQK 307
Query: 337 LKVDEFSRAK 346
LK DE ++ K
Sbjct: 308 LKDDEVAQLK 317
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 10/239 (4%)
Query: 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170
E CKD +I + G +K G R +++ KN+ I+K S + LV NP +
Sbjct: 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI-FLVATNPVDI 127
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 230
+F+ + I T LD R +SE +V II G H T+ P
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII-GEHGDTELPVW 186
Query: 231 NHATVTTSKGEKPVREAVADDNWLNTEFITTV--QQRGAAIIKARKXXXXXXXXXXXCDH 288
+HA V G PV E V ++ E + + + AA K
Sbjct: 187 SHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLAR 242
Query: 289 IRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKM 347
I +L + + +++ Y DG YG + I P +G + + L ++E + +
Sbjct: 243 ITKAILHN-ENSILTVSTYLDGQYGADDVYI-GVPAVVNRGGIAGITELNLNEKEKEQF 299
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172
KD ++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPVDILT 132
Query: 173 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
+ + + + T LD R I+E + V V + I G H T++P +H
Sbjct: 133 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSH 191
Query: 233 ATV 235
A +
Sbjct: 192 ANI 194
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 18/310 (5%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
++ V G GQ+G A I LG L ++D+ + L G M+L + L
Sbjct: 22 KITVVG-VGQVGMACAISI-----LGKSLADELALVDV--LEDKLKGEMMDLQHGSLFLQ 73
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
+ + I V+ G ++EG R +++ +NV+++K + K+ +P+C
Sbjct: 74 TPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCI 132
Query: 161 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII-- 218
++VV+NP + + + + + I LD R ++E+L +H S I+
Sbjct: 133 IIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 219 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKXXXX 278
G+ S + VN A V+ + + +NW E V + +IK K
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENW--KEVHKMVVESAYEVIKL-KGYTN 249
Query: 279 XXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIV-KG 336
D I + + VS V G YGI + S P + +G S++ +
Sbjct: 250 WAIGLSVADLIESMLKNLSRIHPVSTMV--KGMYGIENEVFLSLPCILNARGLTSVINQK 307
Query: 337 LKVDEFSRAK 346
LK DE ++ K
Sbjct: 308 LKDDEVAQLK 317
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172
KD ++ V+ G P++ G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 73 AKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPI-VDSGFNLIFLVAANPVDILT 131
Query: 173 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
+ + + + T LD R I+E + V V + I G H T++P +H
Sbjct: 132 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSV-HAYIMGEHGDTEFPVWSH 190
Query: 233 ATV 235
A +
Sbjct: 191 ANI 193
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 11/191 (5%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+V V GA G IG AL ++ + G + L + DI P + V + I A +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI- 55
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
KG + D A + ++ ++ G RK GM+R D+ + N I K + K C
Sbjct: 56 KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC- 113
Query: 161 VLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVI 217
+ ++ NP NT I E + KN + +T LD R+ ++E +V+ +
Sbjct: 114 IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPV 173
Query: 218 IWGNHSSTQYP 228
I G+ T P
Sbjct: 174 IGGHSGVTILP 184
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 78 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 137
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 52 VDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 111
Query: 138 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 197
+NV+I+K + KH +P+C +LVV+NP + + + + + I LD R
Sbjct: 112 QRNVNIFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSAR 170
Query: 198 AMGQISERLKVHVSDVKNVIIWGNHSST 225
+ ERL VH +I G H +
Sbjct: 171 FRYLMGERLGVHSCSCHGWVI-GEHGDS 197
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 78 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 137
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 51 VDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 110
Query: 138 SKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNR 197
+NV+I+K + KH +P+C +LVV+NP + + + + + I LD R
Sbjct: 111 QRNVNIFKFIIPNIVKH-SPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSAR 169
Query: 198 AMGQISERLKVHVSDVKNVIIWGNHSST 225
+ ERL VH +I G H +
Sbjct: 170 FRYLMGERLGVHSCSCHGWVI-GEHGDS 196
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 11/191 (5%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+V V GA G IG AL ++ + G + L + DI P + V + I A +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI- 55
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
KG + D A + ++ ++ G RK GM+R D+ + N I K + K C
Sbjct: 56 KGF-SGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC- 113
Query: 161 VLVVANPANTNALILKEF--APSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVI 217
+ ++ NP NT I E + KN + +T LD R+ ++E +V+ +
Sbjct: 114 IGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPV 173
Query: 218 IWGNHSSTQYP 228
I G+ T P
Sbjct: 174 IGGHSGVTILP 184
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 83 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 142
+ L G M+L + L + ++ + + ++ G ++EG R +++ +NV+
Sbjct: 55 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 114
Query: 143 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 202
I+K + K+ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 115 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 173
Query: 203 SERLKVHVSDVKNVIIWGNHSSTQYP 228
ERL VH ++ G H + P
Sbjct: 174 GERLGVHPLSCHGWVL-GEHGDSSVP 198
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Query: 83 EALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVS 142
+ L G M+L + L + ++ + + ++ G ++EG R +++ +NV+
Sbjct: 56 DKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVN 115
Query: 143 IYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQI 202
I+K + K+ +P CK+L+V+NP + + + + + I LD R +
Sbjct: 116 IFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM 174
Query: 203 SERLKVHVSDVKNVIIWGNHSSTQYP 228
ERL VH ++ G H + P
Sbjct: 175 GERLGVHPLSCHGWVL-GEHGDSSVP 199
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+V V GA G IG AL ++ + G + L + DI P + V + I A +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTPGV-AVDLSHIPTAVKI- 55
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
KG + D A + ++ ++ G RK GM+R D+ + N I K + K C
Sbjct: 56 KGF-SGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC- 113
Query: 161 VLVVANPANTNALILKE 177
+ ++ NP NT I E
Sbjct: 114 IGIITNPVNTTVAIAAE 130
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172
KD ++ V+ G P+K G R D+++KN+ I K+ + + N LV ANP +
Sbjct: 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPI-VDSGFNGIFLVAANPVDILT 132
Query: 173 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
+ + + + T LD R I++ + V V + I G H T++P +H
Sbjct: 133 YATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSV-HAYIMGEHGDTEFPVWSH 191
Query: 233 ATV 235
A +
Sbjct: 192 ANI 194
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172
C D ++ V+ G +K G R D++SKN+ I+K+ + LV NP + A
Sbjct: 72 CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI-FLVATNPVDILA 130
Query: 173 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
+F+ + I T LD R +SE V V II G H T+ P +H
Sbjct: 131 YATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWSH 189
Query: 233 ATV 235
A +
Sbjct: 190 ANI 192
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172
K I V+ G RK GM R D+ KN I K A + ++A P K+LVV NP +
Sbjct: 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMT 125
Query: 173 LIL-KEFAPSIPAKNITCL-TRLDHNRAMGQISERL-KVHVSDVKNVIIWGNHSSTQY 227
I+ KE P + + +LD R + ERL +++ I G H + +
Sbjct: 126 YIMWKESGK--PRNEVFGMGNQLDSQR----LKERLYNAGARNIRRAWIIGEHGDSMF 177
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 40 CRVLVTGATGQIGYAL-VPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 98
C++ V G G +G A + ++ +G+ D+ L ++D + + L G ++L +
Sbjct: 20 CKITVVGV-GDVGMACAISILLKGL---ADE---LALVDAD--TDKLRGEALDLQHGSLF 70
Query: 99 LLKGVVATTDVVEACKDVNIA------VMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 152
L +T + KD N++ ++ G G R D++ +NV+I KA +
Sbjct: 71 L------STPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVI 124
Query: 153 KHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSD 212
+++ P+CK++VV NP + ++ + + + I LD R I E+L V+ +
Sbjct: 125 QNS-PDCKIIVVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTS 183
Query: 213 VKNVIIWGNHSSTQYP---DVNHATVT 236
++ G H + P VN A VT
Sbjct: 184 CHGWVL-GEHGDSSVPIWSGVNVAGVT 209
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172
C D ++ V+ G +K G R D++SKN+ I+K+ + LV NP + A
Sbjct: 72 CHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI-FLVATNPVDILA 130
Query: 173 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNH 232
+F+ + I T LD R +SE V V II G H T+ P +H
Sbjct: 131 YATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII-GEHGDTELPVWSH 189
Query: 233 ATV 235
A +
Sbjct: 190 ANI 192
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 131
Query: 177 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 132 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 131
Query: 177 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 132 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 182
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 177 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 177 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176
++ V+ G PR+ G R D+ N I + S+L++H + L +NP + L
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLY 130
Query: 177 EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
E + I RLD R +SE V +V+ I+ G H Q P
Sbjct: 131 EAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL-GEHGDAQVP 181
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK--VLVVANPANT 170
C+D ++ V+ G +K G R D++ KN++I++ S +E A + LV NP +
Sbjct: 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFR---SIVESVMASGFQGLFLVATNPVDI 128
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 230
+F+ + I T LD R + E V +V II G H T+ P
Sbjct: 129 LTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTELPVW 187
Query: 231 NHATVTTSKGEKPVREAV 248
+ A + G P+R+ V
Sbjct: 188 SQAYI----GVMPIRKLV 201
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK--VLVVANPANT 170
C+D ++ V+ G +K G R D++ KN++I++ S +E A + LV NP +
Sbjct: 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFR---SIVESVMASGFQGLFLVATNPVDI 128
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 230
+F+ + I T LD R + E V +V II G H T+ P
Sbjct: 129 LTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII-GEHGDTELPVW 187
Query: 231 NHATVTTSKGEKPVREAV 248
+ A + G P+R+ V
Sbjct: 188 SQAYI----GVMPIRKLV 201
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 174
D + ++ G +K G R D++ KN I++ + + AAP+ +LV +NP + +
Sbjct: 67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITR-AAPDAVLLVTSNPVDLLTDL 125
Query: 175 LKEFAPSIPAKNITCLTRLDHNR 197
+ AP P I T LD R
Sbjct: 126 ATQLAPGQPV--IGSGTVLDSAR 146
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 173
K ++ ++ G P+K G R ++ +N + K A + K+ AP+ V+VV NP +
Sbjct: 66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTY 124
Query: 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYP 228
+ + P K T LD R I++ V +V + G H ++ P
Sbjct: 125 FFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSV-HVYVIGEHGDSEVP 178
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 179
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVXTQVAYRLS 130
Query: 180 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 226
P + + T LD R ++E L+V V + + G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAYVLGEHGDSE 176
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 179
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLS 130
Query: 180 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 226
P + + T LD R ++E L+V V + + G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAYVLGEHGDSE 176
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 179
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLS 130
Query: 180 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 226
P + + T LD R ++E L+V V + + G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAYVLGEHGDSE 176
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA 179
V+ G ++ G R ++ +N ++ AQ AAP +LV NP + + +
Sbjct: 72 VLAAGVAQRPGETRLQLLDRNAQVF-AQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALS 130
Query: 180 PSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQ 226
P + + T LD R ++E L+V V ++ G H ++
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSE 176
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V+ ++ + KD ++ ++ GF + G R D++ N I + K+ PN
Sbjct: 61 VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNNCPN 119
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 218 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEF 258
I G H + + TV G P++E + + + E
Sbjct: 178 IVGAHGNKMVLLKRYITV----GGIPLQEFINNKKITDQEL 214
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V ++ + K ++ ++ GF + G R D++ N I + K+ PN
Sbjct: 60 VTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KNLCPN 118
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L E + +P I L LD +R IS++L V DV N +
Sbjct: 119 AFIIVVTNPVDVMVQLLFEHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAL 176
Query: 218 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRG 266
I G H + + TV G P++E ++N + IT + G
Sbjct: 177 IVGAHGNKMVLLKRYITV----GGIPLQE------FINNKKITDEEVEG 215
>pdb|1NAS|A Chain A, Sepiapterin Reductase Complexed With N-acetyl Serotonin
pdb|1OAA|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Oxaloacetate
Length = 259
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 40 CRVLV-TGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 98
C V V TGA+ G AL P +AR +L P ++ + +E++ E + A P
Sbjct: 6 CAVCVLTGASRGFGRALAPQLAR--LLSPGSVML-----VSARSESMLRQLKEELGAQQP 58
Query: 99 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMER 133
LK V+A D+ + V PR EG++R
Sbjct: 59 DLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQR 93
>pdb|1SEP|A Chain A, Mouse Sepiapterin Reductase Complexed With Nadp And
Sepiapterin
Length = 261
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 40 CRVLV-TGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 98
C V V TGA+ G AL P +AR +L P ++ + +E++ E + A P
Sbjct: 8 CAVCVLTGASRGFGRALAPQLAR--LLSPGSVML-----VSARSESMLRQLKEELGAQQP 60
Query: 99 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMER 133
LK V+A D+ + V PR EG++R
Sbjct: 61 DLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQR 95
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 218 IWGNHSS 224
I G H +
Sbjct: 177 IVGAHGN 183
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 218 IWGNHSS 224
I G H +
Sbjct: 178 IVGAHGN 184
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 118
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 119 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 176
Query: 218 IWGNHSS 224
I G H +
Sbjct: 177 IVGAHGN 183
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 218 IWGNHSS 224
I G H +
Sbjct: 178 IVGAHGN 184
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 218 IWGNHSS 224
I G H +
Sbjct: 178 IVGAHGN 184
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 174
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 175 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 234
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 235 VTTSKGEKPV 244
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 174
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 175 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 234
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 235 VTTSKGEKPV 244
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 174
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 175 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 234
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 235 VTTSKGEKPV 244
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 104 VATTDVVEACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPN 158
V+ ++ + ++ ++ GF + G R D++ N I ++K+ PN
Sbjct: 61 VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNC-PN 119
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTR-LDHNRAMGQISERLKVHVSDVKNVI 217
++VV NP + +L + + +P I L LD +R IS++L V DV N
Sbjct: 120 AFIIVVTNPVDVMVQLLHQHS-GVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV-NAH 177
Query: 218 IWGNHSS 224
I G H +
Sbjct: 178 IVGAHGN 184
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 174
+++I + GGFP +D K I +ALEKH P+ K+ +VA P
Sbjct: 228 NMHILDIGGGFPGT-----RDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVAS 282
Query: 175 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 234
A ++ AK +T + D ++ +V+D ++G+ + Y +HA
Sbjct: 283 AFTLAVNVIAKAVTPGVQTDVGAHAESNAQSFMYYVNDG----VYGSFNCILY---DHAV 335
Query: 235 VTTSKGEKPV 244
V +P+
Sbjct: 336 VRPLPQREPI 345
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 175 LKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHAT 234
L + A KNI + +D N+ +G I+ER D+ I G T+ + A+
Sbjct: 23 LNDIAKVXTEKNIGSVIVVDGNKPVGIITER------DIVKAIGKGKSLETKAEEFXTAS 76
Query: 235 VTTSKGEKPVREAVADDNWLNTEFITTVQQRG 266
+ T + + P+ A+A N + V +G
Sbjct: 77 LITIREDSPITGALALXRQFNIRHLPVVDDKG 108
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From
Hyperthermophilic Archaeon Thermoplasma Volcanium
Length = 317
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 42 VLVTGATGQIGYALVPMIA 60
+LVTG++GQIG LVP +A
Sbjct: 2 ILVTGSSGQIGTELVPYLA 20
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 42 VLVTGATGQIGYALVPMIA 60
+LVTG++GQIG LVP +A
Sbjct: 2 ILVTGSSGQIGTELVPYLA 20
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 78 IEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVM 137
++ + L G M+L + L + + + V+ G ++EG R +++
Sbjct: 52 VDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLV 111
Query: 138 SKNVSIYKAQASALEKHAAPNC 159
+NV+I+K + KH +P+C
Sbjct: 112 QRNVNIFKFIIPNIVKH-SPDC 132
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 196 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTT 237
N+ + ++ ER+K + D ++WG + +P H TT
Sbjct: 115 NKILDKVVERIKERMKDSNVKLLWGTANLFSHPRYMHGAATT 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,143,362
Number of Sequences: 62578
Number of extensions: 395800
Number of successful extensions: 1048
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 119
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)