Query 017740
Match_columns 366
No_of_seqs 175 out of 1606
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01759 MalateDH-SF1 malate 100.0 2.2E-70 4.9E-75 524.1 34.3 320 37-361 1-323 (323)
2 PRK05442 malate dehydrogenase; 100.0 6.7E-70 1.5E-74 521.5 35.0 325 37-365 2-326 (326)
3 COG0039 Mdh Malate/lactate deh 100.0 6E-70 1.3E-74 511.9 33.2 307 40-365 1-311 (313)
4 TIGR01757 Malate-DH_plant mala 100.0 6.4E-69 1.4E-73 521.5 36.9 324 37-365 42-368 (387)
5 PLN00112 malate dehydrogenase 100.0 9.6E-68 2.1E-72 520.2 36.0 322 37-365 98-424 (444)
6 cd00704 MDH Malate dehydrogena 100.0 1E-66 2.3E-71 499.6 32.3 315 41-361 2-322 (323)
7 cd01338 MDH_choloroplast_like 100.0 3.4E-66 7.5E-71 495.8 34.4 318 39-362 2-321 (322)
8 cd01336 MDH_cytoplasmic_cytoso 100.0 9.3E-66 2E-70 494.1 33.5 318 39-361 2-324 (325)
9 TIGR01758 MDH_euk_cyt malate d 100.0 2E-65 4.3E-70 491.0 32.9 317 41-362 1-323 (324)
10 cd05290 LDH_3 A subgroup of L- 100.0 7.8E-65 1.7E-69 483.4 33.0 298 41-358 1-306 (307)
11 cd05295 MDH_like Malate dehydr 100.0 5.7E-64 1.2E-68 493.1 34.4 315 38-361 122-450 (452)
12 PLN00135 malate dehydrogenase 100.0 3.8E-63 8.1E-68 470.8 33.4 305 59-365 2-308 (309)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 2.8E-63 6.1E-68 471.8 30.8 293 44-356 1-299 (299)
14 PLN02602 lactate dehydrogenase 100.0 1.5E-62 3.3E-67 474.1 35.3 302 40-361 38-348 (350)
15 PRK00066 ldh L-lactate dehydro 100.0 2E-62 4.2E-67 469.5 34.7 305 36-361 3-313 (315)
16 KOG1495 Lactate dehydrogenase 100.0 5.7E-63 1.2E-67 443.8 29.0 299 39-359 20-328 (332)
17 cd05293 LDH_1 A subgroup of L- 100.0 1E-61 2.3E-66 463.3 34.8 300 40-359 4-311 (312)
18 TIGR01756 LDH_protist lactate 100.0 6.2E-62 1.3E-66 463.6 31.8 304 57-365 3-312 (313)
19 cd05291 HicDH_like L-2-hydroxy 100.0 7.8E-61 1.7E-65 458.1 34.6 300 40-359 1-305 (306)
20 cd00300 LDH_like L-lactate deh 100.0 2.1E-60 4.4E-65 453.5 33.4 296 42-358 1-299 (300)
21 PTZ00117 malate dehydrogenase; 100.0 1.1E-58 2.4E-63 444.7 36.3 305 38-364 4-317 (319)
22 cd05292 LDH_2 A subgroup of L- 100.0 2.3E-58 5E-63 441.0 33.8 300 40-360 1-307 (308)
23 TIGR01772 MDH_euk_gproteo mala 100.0 1.6E-58 3.4E-63 440.1 31.5 297 41-365 1-310 (312)
24 PTZ00082 L-lactate dehydrogena 100.0 7.4E-58 1.6E-62 438.7 36.3 302 38-360 5-319 (321)
25 KOG1496 Malate dehydrogenase [ 100.0 5.6E-59 1.2E-63 411.5 25.8 330 37-366 2-331 (332)
26 TIGR01763 MalateDH_bact malate 100.0 4.5E-58 9.8E-63 437.7 33.5 298 40-360 2-304 (305)
27 cd01337 MDH_glyoxysomal_mitoch 100.0 3.1E-58 6.7E-63 437.3 31.5 296 40-365 1-310 (310)
28 cd05294 LDH-like_MDH_nadp A la 100.0 1.2E-57 2.6E-62 435.8 33.4 303 40-360 1-308 (309)
29 PTZ00325 malate dehydrogenase; 100.0 1.7E-56 3.7E-61 427.3 33.4 301 37-366 6-318 (321)
30 PRK06223 malate dehydrogenase; 100.0 9.9E-55 2.1E-59 416.5 34.7 298 40-361 3-306 (307)
31 PRK05086 malate dehydrogenase; 100.0 5.5E-55 1.2E-59 417.5 32.2 298 40-366 1-311 (312)
32 cd01339 LDH-like_MDH L-lactate 100.0 1.2E-54 2.6E-59 414.5 33.4 294 42-359 1-300 (300)
33 PLN00106 malate dehydrogenase 100.0 2.7E-54 5.8E-59 412.5 32.4 294 39-359 18-322 (323)
34 cd00650 LDH_MDH_like NAD-depen 100.0 1.8E-49 3.9E-54 372.1 30.8 259 42-358 1-262 (263)
35 KOG1494 NAD-dependent malate d 100.0 6.4E-50 1.4E-54 361.2 23.7 302 37-365 26-339 (345)
36 PF02866 Ldh_1_C: lactate/mala 100.0 2.6E-37 5.5E-42 272.4 17.8 168 191-365 1-174 (174)
37 PF00056 Ldh_1_N: lactate/mala 100.0 3E-30 6.5E-35 219.5 15.0 141 40-189 1-141 (141)
38 cd05197 GH4_glycoside_hydrolas 99.9 1.3E-22 2.8E-27 201.3 30.6 297 40-360 1-390 (425)
39 cd05298 GH4_GlvA_pagL_like Gly 99.9 3E-21 6.4E-26 191.9 31.5 300 40-361 1-394 (437)
40 PRK15076 alpha-galactosidase; 99.9 2.4E-21 5.2E-26 192.9 28.0 293 40-359 2-383 (431)
41 cd05296 GH4_P_beta_glucosidase 99.9 3.2E-20 6.9E-25 184.0 29.6 295 40-360 1-379 (419)
42 cd05297 GH4_alpha_glucosidase_ 99.8 2.1E-18 4.6E-23 171.9 29.3 295 40-359 1-386 (423)
43 COG1486 CelF Alpha-galactosida 99.7 3.7E-16 7.9E-21 152.8 23.8 298 39-361 3-397 (442)
44 PF02056 Glyco_hydro_4: Family 99.6 2.8E-14 6.1E-19 125.5 18.0 156 41-208 1-183 (183)
45 PF03721 UDPG_MGDP_dh_N: UDP-g 98.7 2.7E-07 5.8E-12 82.1 11.8 119 40-178 1-138 (185)
46 KOG1502 Flavonol reductase/cin 98.6 4.4E-07 9.4E-12 86.5 12.5 110 38-155 5-119 (327)
47 COG1004 Ugd Predicted UDP-gluc 98.6 1.4E-06 3E-11 84.5 15.9 117 40-176 1-132 (414)
48 PF02737 3HCDH_N: 3-hydroxyacy 98.6 3.9E-07 8.5E-12 80.7 10.0 108 41-175 1-122 (180)
49 PRK07819 3-hydroxybutyryl-CoA 98.5 1.4E-06 3E-11 82.8 13.6 116 35-177 1-131 (286)
50 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 1.1E-06 2.3E-11 76.1 9.1 95 41-163 1-101 (157)
51 PRK07066 3-hydroxybutyryl-CoA 98.4 4.4E-06 9.4E-11 80.5 13.7 113 39-177 7-129 (321)
52 COG0240 GpsA Glycerol-3-phosph 98.4 7.5E-06 1.6E-10 78.1 14.3 111 40-178 2-123 (329)
53 PRK08293 3-hydroxybutyryl-CoA 98.4 7.4E-06 1.6E-10 77.8 13.4 105 40-170 4-123 (287)
54 PLN02166 dTDP-glucose 4,6-dehy 98.3 1.3E-05 2.8E-10 80.7 15.5 112 38-166 119-234 (436)
55 PF01073 3Beta_HSD: 3-beta hyd 98.3 1.6E-06 3.5E-11 82.1 8.6 104 43-155 1-107 (280)
56 COG1250 FadB 3-hydroxyacyl-CoA 98.3 6.9E-06 1.5E-10 78.2 11.2 144 40-210 4-178 (307)
57 PF02719 Polysacc_synt_2: Poly 98.3 2.3E-06 4.9E-11 80.8 7.8 122 42-172 1-139 (293)
58 PLN02650 dihydroflavonol-4-red 98.2 9.4E-06 2E-10 79.0 11.8 118 37-165 3-127 (351)
59 TIGR01915 npdG NADPH-dependent 98.2 5.3E-05 1.2E-09 69.1 15.2 104 40-170 1-106 (219)
60 PLN02662 cinnamyl-alcohol dehy 98.2 1.9E-05 4.2E-10 75.5 12.0 106 39-154 4-116 (322)
61 PLN02206 UDP-glucuronate decar 98.2 5.6E-05 1.2E-09 76.2 15.6 112 38-166 118-233 (442)
62 PLN02583 cinnamoyl-CoA reducta 98.2 2.2E-05 4.7E-10 74.8 12.0 120 39-166 6-128 (297)
63 PLN02427 UDP-apiose/xylose syn 98.2 7.8E-06 1.7E-10 80.7 9.2 117 37-166 12-136 (386)
64 PRK11730 fadB multifunctional 98.2 2.3E-05 5E-10 83.5 13.2 112 39-177 313-438 (715)
65 PLN02353 probable UDP-glucose 98.1 4.2E-05 9.2E-10 77.5 14.4 126 40-174 2-137 (473)
66 PRK09260 3-hydroxybutyryl-CoA 98.1 2.8E-05 6.1E-10 73.9 12.4 104 40-169 2-119 (288)
67 PLN00198 anthocyanidin reducta 98.1 2.2E-05 4.7E-10 76.0 11.5 116 39-165 9-130 (338)
68 PRK05808 3-hydroxybutyryl-CoA 98.1 4.7E-05 1E-09 72.1 13.4 112 40-178 4-129 (282)
69 TIGR02437 FadB fatty oxidation 98.1 2.7E-05 5.9E-10 82.9 13.0 113 38-177 312-438 (714)
70 PRK11154 fadJ multifunctional 98.1 2.9E-05 6.4E-10 82.7 13.1 112 39-177 309-435 (708)
71 PRK15181 Vi polysaccharide bio 98.1 1.4E-05 3E-10 77.9 9.7 171 39-222 15-199 (348)
72 TIGR02440 FadJ fatty oxidation 98.1 3.5E-05 7.6E-10 81.9 13.3 113 38-177 303-430 (699)
73 PLN02695 GDP-D-mannose-3',5'-e 98.1 2E-05 4.3E-10 77.6 9.9 124 29-166 11-137 (370)
74 TIGR02441 fa_ox_alpha_mit fatt 98.1 3.1E-05 6.8E-10 82.7 12.0 112 39-177 335-460 (737)
75 PRK07530 3-hydroxybutyryl-CoA 98.1 5.9E-05 1.3E-09 71.8 12.7 104 40-170 5-122 (292)
76 PRK06035 3-hydroxyacyl-CoA deh 98.1 6.6E-05 1.4E-09 71.4 12.9 105 40-171 4-125 (291)
77 PLN02989 cinnamyl-alcohol dehy 98.0 5E-05 1.1E-09 72.9 12.1 120 35-165 1-128 (325)
78 KOG2304 3-hydroxyacyl-CoA dehy 98.0 7.2E-06 1.6E-10 73.6 5.0 113 38-176 10-142 (298)
79 PRK06130 3-hydroxybutyryl-CoA 98.0 0.00012 2.7E-09 70.2 13.7 112 39-176 4-124 (311)
80 PRK08268 3-hydroxy-acyl-CoA de 98.0 8.4E-05 1.8E-09 76.2 13.1 106 38-170 6-125 (507)
81 TIGR03376 glycerol3P_DH glycer 98.0 6.7E-05 1.4E-09 73.0 11.6 119 41-178 1-136 (342)
82 COG1086 Predicted nucleoside-d 98.0 5.8E-05 1.3E-09 76.4 11.4 124 39-172 250-387 (588)
83 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.0 7.9E-05 1.7E-09 76.2 12.7 106 40-172 6-125 (503)
84 TIGR03589 PseB UDP-N-acetylglu 98.0 4.8E-05 1E-09 73.5 10.4 118 39-165 4-124 (324)
85 PTZ00345 glycerol-3-phosphate 98.0 9.3E-05 2E-09 72.6 12.3 120 37-178 9-149 (365)
86 PLN02214 cinnamoyl-CoA reducta 98.0 7.4E-05 1.6E-09 72.7 11.6 114 39-165 10-126 (342)
87 CHL00194 ycf39 Ycf39; Provisio 98.0 4.2E-05 9.1E-10 73.5 9.6 108 40-165 1-109 (317)
88 PRK08125 bifunctional UDP-gluc 97.9 3.8E-05 8.2E-10 81.4 10.0 114 38-166 314-432 (660)
89 TIGR02622 CDP_4_6_dhtase CDP-g 97.9 6.3E-05 1.4E-09 73.2 10.6 118 39-166 4-127 (349)
90 PLN02986 cinnamyl-alcohol dehy 97.9 0.00013 2.7E-09 70.1 12.4 107 38-154 4-117 (322)
91 PLN02545 3-hydroxybutyryl-CoA 97.9 0.00017 3.8E-09 68.7 13.0 110 40-176 5-128 (295)
92 PRK11908 NAD-dependent epimera 97.9 4.3E-05 9.3E-10 74.3 8.5 111 40-166 2-118 (347)
93 PLN02572 UDP-sulfoquinovose sy 97.9 9.2E-05 2E-09 74.7 11.0 118 38-163 46-188 (442)
94 PRK07531 bifunctional 3-hydrox 97.9 0.00018 3.8E-09 73.7 13.0 112 40-177 5-126 (495)
95 TIGR03026 NDP-sugDHase nucleot 97.9 0.00039 8.4E-09 69.5 14.8 112 40-171 1-127 (411)
96 PLN02778 3,5-epimerase/4-reduc 97.9 0.00025 5.4E-09 67.7 12.9 89 39-155 9-102 (298)
97 TIGR01472 gmd GDP-mannose 4,6- 97.8 8.6E-05 1.9E-09 72.0 9.8 109 40-155 1-120 (343)
98 PLN03209 translocon at the inn 97.8 0.00013 2.8E-09 75.0 10.9 117 38-165 79-207 (576)
99 PLN02896 cinnamyl-alcohol dehy 97.8 0.00014 3E-09 70.9 10.8 118 38-165 9-137 (353)
100 PRK12439 NAD(P)H-dependent gly 97.8 0.00063 1.4E-08 66.3 14.9 113 37-178 5-129 (341)
101 KOG1430 C-3 sterol dehydrogena 97.8 9E-05 2E-09 72.1 8.9 111 39-155 4-117 (361)
102 PRK06129 3-hydroxyacyl-CoA deh 97.8 0.00035 7.5E-09 67.1 12.9 73 40-122 3-89 (308)
103 PRK09987 dTDP-4-dehydrorhamnos 97.8 7.1E-05 1.5E-09 71.4 8.1 92 40-155 1-96 (299)
104 TIGR03466 HpnA hopanoid-associ 97.8 0.0001 2.2E-09 70.5 9.0 112 40-166 1-113 (328)
105 COG0451 WcaG Nucleoside-diphos 97.8 0.00016 3.4E-09 68.6 10.0 101 41-154 2-106 (314)
106 COG1087 GalE UDP-glucose 4-epi 97.7 0.00018 3.9E-09 67.6 9.5 104 40-155 1-109 (329)
107 PF03807 F420_oxidored: NADP o 97.7 0.0003 6.5E-09 55.1 9.4 94 41-167 1-96 (96)
108 PLN02240 UDP-glucose 4-epimera 97.7 0.00055 1.2E-08 66.3 13.2 120 37-165 3-131 (352)
109 TIGR01777 yfcH conserved hypot 97.7 0.00011 2.3E-09 69.1 7.7 97 42-155 1-101 (292)
110 PRK11150 rfaD ADP-L-glycero-D- 97.7 0.0003 6.5E-09 67.0 10.9 107 42-165 2-115 (308)
111 PF13460 NAD_binding_10: NADH( 97.7 0.00014 3.1E-09 63.6 7.9 97 42-165 1-97 (183)
112 PRK10675 UDP-galactose-4-epime 97.6 0.00062 1.3E-08 65.6 12.2 115 40-165 1-123 (338)
113 KOG1429 dTDP-glucose 4-6-dehyd 97.6 0.00014 3.1E-09 67.6 7.2 114 37-165 25-140 (350)
114 PRK12921 2-dehydropantoate 2-r 97.6 0.00038 8.3E-09 66.3 10.5 115 40-187 1-120 (305)
115 PRK15182 Vi polysaccharide bio 97.6 0.0016 3.4E-08 65.4 14.8 112 39-172 6-128 (425)
116 PRK00094 gpsA NAD(P)H-dependen 97.6 0.00083 1.8E-08 64.6 12.4 104 40-169 2-109 (325)
117 COG2085 Predicted dinucleotide 97.6 0.0016 3.4E-08 58.5 13.0 96 39-168 1-96 (211)
118 TIGR01181 dTDP_gluc_dehyt dTDP 97.6 0.00027 5.8E-09 67.0 8.8 118 41-165 1-124 (317)
119 PRK10217 dTDP-glucose 4,6-dehy 97.6 0.00045 9.9E-09 67.1 10.6 172 40-223 2-195 (355)
120 PRK15057 UDP-glucose 6-dehydro 97.6 0.0018 4E-08 64.2 14.7 121 40-177 1-130 (388)
121 PLN02653 GDP-mannose 4,6-dehyd 97.6 0.00027 5.8E-09 68.4 8.6 110 39-155 6-125 (340)
122 PRK10084 dTDP-glucose 4,6 dehy 97.6 0.00041 8.9E-09 67.4 9.8 108 40-154 1-114 (352)
123 PRK14620 NAD(P)H-dependent gly 97.6 0.00089 1.9E-08 64.7 12.0 104 40-169 1-110 (326)
124 PF03446 NAD_binding_2: NAD bi 97.6 0.00064 1.4E-08 59.0 9.9 64 39-122 1-64 (163)
125 KOG2711 Glycerol-3-phosphate d 97.6 0.0013 2.7E-08 62.8 12.3 131 38-194 20-175 (372)
126 PRK07806 short chain dehydroge 97.5 0.00064 1.4E-08 62.4 10.3 120 39-166 6-135 (248)
127 PLN02260 probable rhamnose bio 97.5 0.00042 9.1E-09 73.5 10.1 118 39-166 6-132 (668)
128 PRK08229 2-dehydropantoate 2-r 97.5 0.00091 2E-08 64.9 11.7 104 40-171 3-113 (341)
129 TIGR01214 rmlD dTDP-4-dehydror 97.5 0.00041 8.8E-09 65.2 8.9 95 41-165 1-99 (287)
130 PLN02657 3,8-divinyl protochlo 97.5 0.00044 9.4E-09 68.7 9.2 114 37-165 58-181 (390)
131 PLN02686 cinnamoyl-CoA reducta 97.5 0.00052 1.1E-08 67.5 9.6 107 38-154 52-169 (367)
132 PRK06522 2-dehydropantoate 2-r 97.5 0.0015 3.2E-08 62.1 12.4 108 40-174 1-109 (304)
133 PRK07231 fabG 3-ketoacyl-(acyl 97.5 0.00062 1.3E-08 62.4 9.4 36 38-80 4-39 (251)
134 PRK07201 short chain dehydroge 97.5 0.00057 1.2E-08 72.1 10.3 108 40-155 1-116 (657)
135 PRK14618 NAD(P)H-dependent gly 97.5 0.0013 2.9E-08 63.6 11.9 74 39-122 4-81 (328)
136 PRK07067 sorbitol dehydrogenas 97.4 0.001 2.2E-08 61.5 10.1 119 39-166 6-140 (257)
137 PRK14982 acyl-ACP reductase; P 97.4 0.0016 3.5E-08 63.1 11.5 97 39-171 155-252 (340)
138 PRK13394 3-hydroxybutyrate deh 97.4 0.00088 1.9E-08 61.8 9.3 117 39-165 7-143 (262)
139 PRK11064 wecC UDP-N-acetyl-D-m 97.4 0.0026 5.7E-08 63.7 13.2 111 39-173 3-128 (415)
140 PRK06249 2-dehydropantoate 2-r 97.4 0.0016 3.6E-08 62.5 11.3 124 35-188 1-125 (313)
141 COG0300 DltE Short-chain dehyd 97.4 0.0018 3.9E-08 60.6 11.0 119 38-167 5-144 (265)
142 TIGR02197 heptose_epim ADP-L-g 97.4 0.0011 2.4E-08 62.9 9.9 109 42-165 1-113 (314)
143 PRK06194 hypothetical protein; 97.4 0.00081 1.7E-08 63.2 8.8 103 39-150 6-124 (287)
144 PRK07523 gluconate 5-dehydroge 97.4 0.0017 3.7E-08 59.9 10.6 120 39-167 10-147 (255)
145 PF01370 Epimerase: NAD depend 97.4 0.00027 5.9E-09 64.0 5.2 166 42-222 1-174 (236)
146 PRK08267 short chain dehydroge 97.3 0.0012 2.6E-08 61.2 9.5 119 40-167 2-137 (260)
147 PRK06180 short chain dehydroge 97.3 0.0017 3.8E-08 60.8 10.8 119 39-166 4-137 (277)
148 PRK10538 malonic semialdehyde 97.3 0.0011 2.3E-08 61.1 9.2 34 40-80 1-34 (248)
149 PRK09135 pteridine reductase; 97.3 0.0018 3.8E-08 59.2 10.5 108 39-154 6-130 (249)
150 PRK07326 short chain dehydroge 97.3 0.002 4.3E-08 58.6 10.7 118 39-167 6-141 (237)
151 PRK05717 oxidoreductase; Valid 97.3 0.00081 1.8E-08 62.1 8.2 119 39-166 10-144 (255)
152 PRK12828 short chain dehydroge 97.3 0.0015 3.2E-08 59.2 9.6 36 38-80 6-41 (239)
153 TIGR03325 BphB_TodD cis-2,3-di 97.3 0.00087 1.9E-08 62.3 8.1 36 38-80 4-39 (262)
154 PRK12937 short chain dehydroge 97.3 0.0019 4.1E-08 59.0 10.1 122 36-165 2-139 (245)
155 PRK06482 short chain dehydroge 97.3 0.0019 4.1E-08 60.4 10.0 118 40-166 3-135 (276)
156 PRK06124 gluconate 5-dehydroge 97.2 0.0031 6.7E-08 58.2 11.1 122 37-167 9-148 (256)
157 PRK14619 NAD(P)H-dependent gly 97.2 0.0025 5.5E-08 61.1 10.8 79 39-166 4-83 (308)
158 PRK05865 hypothetical protein; 97.2 0.0011 2.4E-08 71.5 9.1 105 40-168 1-105 (854)
159 PRK05875 short chain dehydroge 97.2 0.002 4.4E-08 60.2 9.8 36 38-80 6-41 (276)
160 PRK12320 hypothetical protein; 97.2 0.00099 2.1E-08 70.4 8.2 101 40-165 1-101 (699)
161 PRK05653 fabG 3-ketoacyl-(acyl 97.2 0.0027 5.9E-08 57.7 10.2 35 39-80 5-39 (246)
162 PRK08655 prephenate dehydrogen 97.2 0.0074 1.6E-07 60.9 14.1 66 40-123 1-66 (437)
163 PRK07774 short chain dehydroge 97.2 0.0022 4.7E-08 58.8 9.6 35 39-80 6-40 (250)
164 PRK06128 oxidoreductase; Provi 97.2 0.0034 7.3E-08 59.7 11.1 121 39-166 55-192 (300)
165 TIGR03206 benzo_BadH 2-hydroxy 97.2 0.0039 8.5E-08 57.0 10.8 119 39-166 3-139 (250)
166 PRK08265 short chain dehydroge 97.2 0.0029 6.3E-08 58.8 10.0 119 39-166 6-137 (261)
167 PRK06935 2-deoxy-D-gluconate 3 97.2 0.0024 5.1E-08 59.1 9.3 36 38-80 14-49 (258)
168 PRK07424 bifunctional sterol d 97.2 0.0026 5.7E-08 63.4 10.1 101 38-150 177-283 (406)
169 TIGR01179 galE UDP-glucose-4-e 97.1 0.0017 3.6E-08 61.8 8.4 106 41-155 1-112 (328)
170 PRK07102 short chain dehydroge 97.1 0.0037 8E-08 57.2 10.5 118 40-166 2-135 (243)
171 PRK06500 short chain dehydroge 97.1 0.0033 7E-08 57.5 10.1 114 39-165 6-136 (249)
172 PRK12746 short chain dehydroge 97.1 0.0045 9.8E-08 56.9 11.0 119 39-166 6-147 (254)
173 PRK07680 late competence prote 97.1 0.0069 1.5E-07 57.0 12.3 100 40-169 1-100 (273)
174 PRK06172 short chain dehydroge 97.1 0.0038 8.3E-08 57.4 10.3 36 38-80 6-41 (253)
175 PRK12936 3-ketoacyl-(acyl-carr 97.1 0.0024 5.1E-08 58.2 8.8 120 39-167 6-140 (245)
176 COG1748 LYS9 Saccharopine dehy 97.1 0.0055 1.2E-07 60.3 11.6 74 40-123 2-76 (389)
177 PRK06138 short chain dehydroge 97.1 0.0031 6.7E-08 57.8 9.5 36 38-80 4-39 (252)
178 PRK12429 3-hydroxybutyrate deh 97.1 0.003 6.6E-08 58.0 9.5 35 39-80 4-38 (258)
179 PLN00141 Tic62-NAD(P)-related 97.1 0.0019 4.2E-08 59.7 8.1 103 38-154 16-122 (251)
180 COG1088 RfbB dTDP-D-glucose 4, 97.1 0.0033 7.1E-08 59.1 9.3 116 40-165 1-125 (340)
181 PRK07060 short chain dehydroge 97.1 0.0031 6.7E-08 57.6 9.2 119 37-166 7-137 (245)
182 PF01118 Semialdhyde_dh: Semia 97.1 0.0013 2.8E-08 54.1 6.0 72 41-122 1-73 (121)
183 PRK05866 short chain dehydroge 97.1 0.0081 1.7E-07 57.1 12.2 80 38-126 39-128 (293)
184 PRK08219 short chain dehydroge 97.1 0.0052 1.1E-07 55.3 10.5 77 40-127 4-83 (227)
185 PLN02253 xanthoxin dehydrogena 97.0 0.0049 1.1E-07 57.7 10.5 35 39-80 18-52 (280)
186 PRK05786 fabG 3-ketoacyl-(acyl 97.0 0.004 8.6E-08 56.6 9.6 35 39-80 5-39 (238)
187 PRK08085 gluconate 5-dehydroge 97.0 0.003 6.5E-08 58.2 8.9 120 38-166 8-145 (254)
188 PRK07825 short chain dehydroge 97.0 0.0047 1E-07 57.6 10.3 116 39-166 5-137 (273)
189 PLN02780 ketoreductase/ oxidor 97.0 0.019 4.1E-07 55.4 14.7 47 38-93 52-98 (320)
190 PRK07576 short chain dehydroge 97.0 0.004 8.6E-08 58.0 9.6 121 38-167 8-145 (264)
191 PRK05557 fabG 3-ketoacyl-(acyl 97.0 0.0059 1.3E-07 55.5 10.6 122 37-166 3-142 (248)
192 PRK08945 putative oxoacyl-(acy 97.0 0.012 2.7E-07 53.9 12.8 120 38-166 11-152 (247)
193 PRK08628 short chain dehydroge 97.0 0.0066 1.4E-07 56.0 11.0 37 37-80 5-41 (258)
194 PRK07890 short chain dehydroge 97.0 0.0042 9.1E-08 57.2 9.6 119 39-166 5-141 (258)
195 PRK08263 short chain dehydroge 97.0 0.0024 5.2E-08 59.8 8.0 34 40-80 4-37 (275)
196 PRK08643 acetoin reductase; Va 97.0 0.0077 1.7E-07 55.5 11.2 34 40-80 3-36 (256)
197 COG2910 Putative NADH-flavin r 97.0 0.0054 1.2E-07 53.9 9.3 105 40-166 1-105 (211)
198 PRK06196 oxidoreductase; Provi 97.0 0.0068 1.5E-07 58.1 11.0 116 39-166 26-156 (315)
199 PRK06200 2,3-dihydroxy-2,3-dih 97.0 0.0036 7.7E-08 58.1 8.8 36 38-80 5-40 (263)
200 PLN02260 probable rhamnose bio 97.0 0.007 1.5E-07 64.3 12.0 87 39-155 380-473 (668)
201 PRK06101 short chain dehydroge 97.0 0.0054 1.2E-07 56.2 9.8 117 40-166 2-128 (240)
202 PLN02996 fatty acyl-CoA reduct 97.0 0.011 2.4E-07 60.5 13.0 110 39-154 11-150 (491)
203 PRK09072 short chain dehydroge 97.0 0.011 2.3E-07 54.9 11.9 120 38-166 4-139 (263)
204 PRK07024 short chain dehydroge 97.0 0.0039 8.4E-08 57.7 8.9 34 40-80 3-36 (257)
205 PRK12939 short chain dehydroge 97.0 0.0055 1.2E-07 56.0 9.8 119 39-166 7-143 (250)
206 PRK08213 gluconate 5-dehydroge 97.0 0.021 4.5E-07 52.7 13.7 119 39-166 12-149 (259)
207 PRK08642 fabG 3-ketoacyl-(acyl 97.0 0.0049 1.1E-07 56.5 9.4 37 35-78 1-37 (253)
208 TIGR01832 kduD 2-deoxy-D-gluco 96.9 0.0042 9.2E-08 56.9 8.9 36 38-80 4-39 (248)
209 PRK07453 protochlorophyllide o 96.9 0.0044 9.5E-08 59.5 9.3 35 39-80 6-40 (322)
210 COG1090 Predicted nucleoside-d 96.9 0.0053 1.1E-07 57.3 9.2 95 42-155 1-100 (297)
211 PRK07814 short chain dehydroge 96.9 0.0062 1.3E-07 56.6 9.9 119 38-166 9-147 (263)
212 PRK07856 short chain dehydroge 96.9 0.0043 9.3E-08 57.2 8.7 37 37-80 4-40 (252)
213 PF10727 Rossmann-like: Rossma 96.9 0.0049 1.1E-07 51.3 8.1 103 39-175 10-116 (127)
214 PRK06701 short chain dehydroge 96.9 0.0042 9E-08 58.9 8.8 120 39-166 46-182 (290)
215 PRK07666 fabG 3-ketoacyl-(acyl 96.9 0.013 2.8E-07 53.4 11.8 35 39-80 7-41 (239)
216 PRK06077 fabG 3-ketoacyl-(acyl 96.9 0.013 2.7E-07 53.7 11.7 27 38-64 5-31 (252)
217 PRK12829 short chain dehydroge 96.9 0.0078 1.7E-07 55.5 10.3 35 39-80 11-45 (264)
218 PRK05565 fabG 3-ketoacyl-(acyl 96.9 0.0085 1.8E-07 54.5 10.5 35 39-80 5-40 (247)
219 PRK06182 short chain dehydroge 96.9 0.0049 1.1E-07 57.6 9.0 114 39-166 3-133 (273)
220 COG1893 ApbA Ketopantoate redu 96.9 0.0073 1.6E-07 58.0 10.3 125 40-193 1-126 (307)
221 PRK07069 short chain dehydroge 96.9 0.0048 1E-07 56.5 8.8 116 41-166 1-138 (251)
222 PRK12826 3-ketoacyl-(acyl-carr 96.9 0.0061 1.3E-07 55.6 9.4 35 39-80 6-40 (251)
223 PRK12384 sorbitol-6-phosphate 96.9 0.02 4.3E-07 52.8 12.9 34 40-80 3-36 (259)
224 PRK06181 short chain dehydroge 96.9 0.0088 1.9E-07 55.3 10.5 115 40-167 2-138 (263)
225 TIGR01746 Thioester-redct thio 96.9 0.016 3.4E-07 55.9 12.7 109 41-155 1-127 (367)
226 PRK12823 benD 1,6-dihydroxycyc 96.9 0.0067 1.4E-07 56.0 9.6 35 39-80 8-42 (260)
227 PRK07478 short chain dehydroge 96.9 0.011 2.5E-07 54.3 11.0 117 39-166 6-143 (254)
228 PRK05884 short chain dehydroge 96.9 0.0068 1.5E-07 55.1 9.4 34 40-80 1-34 (223)
229 PRK05876 short chain dehydroge 96.8 0.0069 1.5E-07 56.9 9.6 118 39-166 6-143 (275)
230 PRK08278 short chain dehydroge 96.8 0.015 3.3E-07 54.4 11.9 36 38-80 5-40 (273)
231 KOG1201 Hydroxysteroid 17-beta 96.8 0.055 1.2E-06 51.1 15.2 141 14-165 13-172 (300)
232 PRK08339 short chain dehydroge 96.8 0.039 8.4E-07 51.4 14.5 118 39-167 8-145 (263)
233 PRK06197 short chain dehydroge 96.8 0.0091 2E-07 56.8 10.4 117 39-166 16-152 (306)
234 PRK12367 short chain dehydroge 96.8 0.0049 1.1E-07 57.1 8.3 102 39-151 14-118 (245)
235 COG0677 WecC UDP-N-acetyl-D-ma 96.8 0.025 5.4E-07 55.3 13.1 111 40-171 10-135 (436)
236 PLN02725 GDP-4-keto-6-deoxyman 96.8 0.0034 7.3E-08 59.4 7.2 87 43-155 1-92 (306)
237 PRK07679 pyrroline-5-carboxyla 96.8 0.022 4.8E-07 53.8 12.7 69 40-122 4-72 (279)
238 PRK09134 short chain dehydroge 96.8 0.012 2.6E-07 54.4 10.6 108 39-154 9-132 (258)
239 PRK05993 short chain dehydroge 96.8 0.0071 1.5E-07 56.7 9.2 112 40-166 5-135 (277)
240 PRK07417 arogenate dehydrogena 96.8 0.0093 2E-07 56.4 10.0 64 40-122 1-64 (279)
241 PRK07063 short chain dehydroge 96.8 0.012 2.6E-07 54.4 10.6 45 39-92 7-51 (260)
242 PRK06841 short chain dehydroge 96.8 0.0089 1.9E-07 54.9 9.6 119 38-166 14-148 (255)
243 PRK07985 oxidoreductase; Provi 96.8 0.007 1.5E-07 57.5 9.1 120 40-166 50-186 (294)
244 PRK07454 short chain dehydroge 96.8 0.0086 1.9E-07 54.6 9.4 35 39-80 6-40 (241)
245 PRK07035 short chain dehydroge 96.8 0.012 2.7E-07 54.0 10.5 35 39-80 8-42 (252)
246 PRK09291 short chain dehydroge 96.8 0.019 4.1E-07 52.8 11.7 79 40-127 3-85 (257)
247 PRK06179 short chain dehydroge 96.8 0.007 1.5E-07 56.3 8.9 35 39-80 4-38 (270)
248 PRK05650 short chain dehydroge 96.8 0.012 2.7E-07 54.7 10.5 34 40-80 1-34 (270)
249 PRK05867 short chain dehydroge 96.8 0.0094 2E-07 54.9 9.6 104 39-151 9-128 (253)
250 PRK08226 short chain dehydroge 96.8 0.0095 2.1E-07 55.1 9.7 35 39-80 6-40 (263)
251 PRK11880 pyrroline-5-carboxyla 96.7 0.014 3.1E-07 54.5 10.9 67 40-122 3-69 (267)
252 PF04321 RmlD_sub_bind: RmlD s 96.7 0.0016 3.5E-08 61.8 4.5 91 40-155 1-93 (286)
253 PRK06113 7-alpha-hydroxysteroi 96.7 0.016 3.5E-07 53.4 11.1 121 37-166 9-146 (255)
254 PRK06928 pyrroline-5-carboxyla 96.7 0.021 4.5E-07 54.0 11.9 102 40-170 2-103 (277)
255 PRK07904 short chain dehydroge 96.7 0.012 2.6E-07 54.5 10.2 119 38-166 7-146 (253)
256 PRK08264 short chain dehydroge 96.7 0.0078 1.7E-07 54.7 8.8 118 38-167 5-134 (238)
257 PRK12742 oxidoreductase; Provi 96.7 0.016 3.4E-07 52.6 10.8 118 39-166 6-132 (237)
258 PTZ00142 6-phosphogluconate de 96.7 0.013 2.9E-07 59.5 11.1 99 40-167 2-103 (470)
259 PRK06463 fabG 3-ketoacyl-(acyl 96.7 0.019 4.1E-07 53.0 11.3 35 38-79 6-40 (255)
260 PRK08277 D-mannonate oxidoredu 96.7 0.016 3.5E-07 54.2 10.9 36 38-80 9-44 (278)
261 TIGR01963 PHB_DH 3-hydroxybuty 96.7 0.012 2.6E-07 53.9 9.9 34 40-80 2-35 (255)
262 PRK12935 acetoacetyl-CoA reduc 96.7 0.014 3.1E-07 53.3 10.1 120 39-166 6-143 (247)
263 PRK12491 pyrroline-5-carboxyla 96.7 0.022 4.7E-07 53.8 11.5 68 40-122 3-70 (272)
264 PRK07634 pyrroline-5-carboxyla 96.7 0.039 8.4E-07 50.8 13.0 70 39-122 4-73 (245)
265 PRK12825 fabG 3-ketoacyl-(acyl 96.7 0.014 3E-07 53.0 9.9 26 39-64 6-31 (249)
266 PRK06139 short chain dehydroge 96.7 0.014 3.1E-07 56.5 10.5 80 38-126 6-95 (330)
267 PRK06057 short chain dehydroge 96.6 0.012 2.6E-07 54.3 9.5 35 39-80 7-41 (255)
268 PRK05872 short chain dehydroge 96.6 0.014 3E-07 55.4 10.1 119 39-166 9-143 (296)
269 COG4221 Short-chain alcohol de 96.6 0.018 4E-07 52.8 10.3 118 40-168 7-142 (246)
270 PF01113 DapB_N: Dihydrodipico 96.6 0.019 4.1E-07 47.5 9.6 72 40-122 1-74 (124)
271 KOG1371 UDP-glucose 4-epimeras 96.6 0.016 3.4E-07 55.3 10.0 106 40-155 3-119 (343)
272 PRK06171 sorbitol-6-phosphate 96.6 0.0035 7.5E-08 58.2 5.8 43 29-80 1-43 (266)
273 TIGR01505 tartro_sem_red 2-hyd 96.6 0.011 2.3E-07 56.2 9.2 62 41-122 1-62 (291)
274 PRK12747 short chain dehydroge 96.6 0.031 6.8E-07 51.3 12.0 121 39-167 4-146 (252)
275 PRK12481 2-deoxy-D-gluconate 3 96.6 0.0059 1.3E-07 56.4 7.2 35 39-80 8-42 (251)
276 PLN02688 pyrroline-5-carboxyla 96.6 0.028 6.1E-07 52.5 11.8 68 40-123 1-69 (266)
277 PRK08269 3-hydroxybutyryl-CoA 96.6 0.029 6.2E-07 54.1 12.1 104 51-177 1-125 (314)
278 KOG1205 Predicted dehydrogenas 96.6 0.0097 2.1E-07 56.2 8.5 146 38-197 11-178 (282)
279 PF02558 ApbA: Ketopantoate re 96.6 0.0085 1.8E-07 50.8 7.6 119 42-193 1-126 (151)
280 PRK06125 short chain dehydroge 96.6 0.059 1.3E-06 49.8 13.8 80 38-126 6-92 (259)
281 PRK05693 short chain dehydroge 96.6 0.0093 2E-07 55.7 8.5 34 40-80 2-35 (274)
282 PRK07502 cyclohexadienyl dehyd 96.6 0.023 5E-07 54.4 11.3 68 40-123 7-74 (307)
283 PRK07832 short chain dehydroge 96.6 0.051 1.1E-06 50.6 13.5 119 40-167 1-139 (272)
284 PRK08340 glucose-1-dehydrogena 96.6 0.014 3.1E-07 54.0 9.5 78 40-126 1-87 (259)
285 PRK12480 D-lactate dehydrogena 96.6 0.02 4.3E-07 55.6 10.8 95 38-170 145-239 (330)
286 PRK07074 short chain dehydroge 96.6 0.019 4.2E-07 52.8 10.3 34 40-80 3-36 (257)
287 PRK09186 flagellin modificatio 96.6 0.012 2.6E-07 54.0 8.9 35 39-80 4-38 (256)
288 PRK12744 short chain dehydroge 96.6 0.02 4.4E-07 52.8 10.3 27 38-64 7-33 (257)
289 PRK11559 garR tartronate semia 96.5 0.03 6.5E-07 53.2 11.7 63 40-122 3-65 (296)
290 PRK12745 3-ketoacyl-(acyl-carr 96.5 0.014 2.9E-07 53.7 9.0 34 40-80 3-36 (256)
291 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.024 5.3E-07 50.4 10.3 74 38-123 27-105 (194)
292 PRK06914 short chain dehydroge 96.5 0.042 9.1E-07 51.3 12.5 34 40-80 4-37 (280)
293 PRK06114 short chain dehydroge 96.5 0.021 4.6E-07 52.6 10.3 35 39-80 8-42 (254)
294 TIGR02632 RhaD_aldol-ADH rhamn 96.5 0.029 6.2E-07 59.8 12.5 44 28-80 405-448 (676)
295 PLN02503 fatty acyl-CoA reduct 96.5 0.017 3.6E-07 60.5 10.3 110 39-154 119-257 (605)
296 PRK06523 short chain dehydroge 96.5 0.0071 1.5E-07 55.9 6.9 35 39-80 9-43 (260)
297 PRK07109 short chain dehydroge 96.5 0.027 5.9E-07 54.6 11.3 45 39-92 8-52 (334)
298 PF01488 Shikimate_DH: Shikima 96.5 0.014 3E-07 49.0 8.0 76 39-127 12-87 (135)
299 TIGR00872 gnd_rel 6-phosphoglu 96.5 0.027 5.9E-07 53.8 11.0 95 40-167 1-95 (298)
300 PRK08251 short chain dehydroge 96.5 0.024 5.1E-07 51.9 10.2 34 40-80 3-36 (248)
301 PRK12827 short chain dehydroge 96.5 0.046 9.9E-07 49.7 12.1 107 39-152 6-130 (249)
302 PRK09242 tropinone reductase; 96.5 0.014 2.9E-07 53.9 8.6 45 39-92 9-53 (257)
303 cd05312 NAD_bind_1_malic_enz N 96.4 0.0055 1.2E-07 57.6 5.8 120 40-178 26-156 (279)
304 PRK08324 short chain dehydroge 96.4 0.017 3.7E-07 61.5 10.3 35 39-80 422-456 (681)
305 PRK08993 2-deoxy-D-gluconate 3 96.4 0.025 5.4E-07 52.2 10.1 35 39-80 10-44 (253)
306 PRK07097 gluconate 5-dehydroge 96.4 0.021 4.6E-07 53.0 9.7 36 38-80 9-44 (265)
307 PRK08589 short chain dehydroge 96.4 0.018 3.8E-07 53.9 9.2 34 39-79 6-39 (272)
308 PRK08217 fabG 3-ketoacyl-(acyl 96.4 0.017 3.8E-07 52.7 8.9 36 38-80 4-39 (253)
309 PRK08063 enoyl-(acyl carrier p 96.4 0.036 7.8E-07 50.7 10.9 25 40-64 5-29 (250)
310 PRK12549 shikimate 5-dehydroge 96.4 0.024 5.1E-07 53.9 9.8 76 39-125 127-204 (284)
311 PRK06198 short chain dehydroge 96.4 0.027 5.9E-07 51.9 10.0 35 39-80 6-41 (260)
312 PRK06550 fabG 3-ketoacyl-(acyl 96.4 0.014 3.1E-07 52.8 7.9 35 39-80 5-39 (235)
313 PRK06398 aldose dehydrogenase; 96.3 0.023 4.9E-07 52.7 9.3 35 39-80 6-40 (258)
314 TIGR03649 ergot_EASG ergot alk 96.3 0.013 2.7E-07 55.2 7.6 33 41-80 1-33 (285)
315 PRK07578 short chain dehydroge 96.3 0.02 4.2E-07 50.8 8.4 105 40-165 1-111 (199)
316 PRK06924 short chain dehydroge 96.3 0.016 3.5E-07 53.1 7.7 34 40-80 2-35 (251)
317 TIGR02415 23BDH acetoin reduct 96.2 0.022 4.7E-07 52.2 8.6 33 41-80 2-34 (254)
318 PRK05708 2-dehydropantoate 2-r 96.2 0.056 1.2E-06 51.8 11.6 120 40-190 3-125 (305)
319 TIGR01830 3oxo_ACP_reduc 3-oxo 96.2 0.016 3.4E-07 52.5 7.5 118 42-167 1-136 (239)
320 COG1091 RfbD dTDP-4-dehydrorha 96.2 0.022 4.7E-07 53.8 8.4 95 40-165 1-99 (281)
321 PRK08220 2,3-dihydroxybenzoate 96.2 0.021 4.6E-07 52.2 8.4 34 39-79 8-41 (252)
322 COG0289 DapB Dihydrodipicolina 96.2 0.066 1.4E-06 49.8 11.3 73 39-121 2-75 (266)
323 PRK06484 short chain dehydroge 96.2 0.022 4.8E-07 58.4 9.3 120 39-167 269-402 (520)
324 PRK06953 short chain dehydroge 96.2 0.025 5.5E-07 51.0 8.6 102 40-154 2-117 (222)
325 PRK08177 short chain dehydroge 96.2 0.02 4.4E-07 51.8 8.0 34 40-80 2-35 (225)
326 COG2084 MmsB 3-hydroxyisobutyr 96.2 0.055 1.2E-06 51.2 11.0 65 40-123 1-65 (286)
327 PRK07023 short chain dehydroge 96.2 0.013 2.7E-07 53.6 6.6 34 40-80 2-35 (243)
328 PRK11199 tyrA bifunctional cho 96.2 0.032 7E-07 55.1 9.8 53 38-122 97-149 (374)
329 PRK06545 prephenate dehydrogen 96.2 0.031 6.7E-07 54.9 9.7 67 40-122 1-67 (359)
330 PRK12824 acetoacetyl-CoA reduc 96.2 0.024 5.3E-07 51.5 8.5 34 40-80 3-36 (245)
331 PRK07792 fabG 3-ketoacyl-(acyl 96.2 0.035 7.6E-07 53.0 9.8 36 38-80 11-46 (306)
332 PRK06720 hypothetical protein; 96.2 0.073 1.6E-06 46.5 11.0 40 34-80 11-50 (169)
333 PF05368 NmrA: NmrA-like famil 96.1 0.025 5.5E-07 51.5 8.4 93 42-155 1-94 (233)
334 cd05213 NAD_bind_Glutamyl_tRNA 96.1 0.046 1E-06 52.6 10.5 102 39-171 178-279 (311)
335 PRK15461 NADH-dependent gamma- 96.1 0.018 4E-07 54.9 7.6 63 40-122 2-64 (296)
336 PRK07775 short chain dehydroge 96.1 0.051 1.1E-06 50.8 10.5 34 40-80 11-44 (274)
337 PRK08703 short chain dehydroge 96.1 0.11 2.3E-06 47.4 12.4 35 39-80 6-40 (239)
338 PRK07677 short chain dehydroge 96.1 0.041 8.8E-07 50.6 9.6 34 40-80 2-35 (252)
339 PRK12490 6-phosphogluconate de 96.1 0.049 1.1E-06 52.0 10.4 63 40-122 1-66 (299)
340 PRK07889 enoyl-(acyl carrier p 96.1 0.041 8.9E-07 51.0 9.6 35 39-80 7-43 (256)
341 PRK06484 short chain dehydroge 96.1 0.028 6E-07 57.7 9.2 36 38-80 4-39 (520)
342 KOG1200 Mitochondrial/plastidi 96.0 0.026 5.7E-07 50.1 7.5 127 40-175 15-160 (256)
343 PRK06947 glucose-1-dehydrogena 96.0 0.046 1E-06 49.9 9.7 32 40-78 3-34 (248)
344 PRK05855 short chain dehydroge 96.0 0.047 1E-06 56.3 10.7 119 38-166 314-452 (582)
345 PRK07062 short chain dehydroge 96.0 0.046 9.9E-07 50.6 9.6 45 39-92 8-52 (265)
346 PRK06949 short chain dehydroge 96.0 0.026 5.6E-07 51.9 7.9 35 39-80 9-43 (258)
347 PRK12743 oxidoreductase; Provi 96.0 0.085 1.8E-06 48.6 11.4 32 40-78 3-34 (256)
348 PRK08261 fabG 3-ketoacyl-(acyl 96.0 0.04 8.8E-07 55.5 9.9 119 39-166 210-343 (450)
349 PRK08415 enoyl-(acyl carrier p 96.0 0.031 6.7E-07 52.6 8.3 36 38-80 4-41 (274)
350 KOG2666 UDP-glucose/GDP-mannos 96.0 0.023 5E-07 53.9 7.1 80 40-128 2-91 (481)
351 PRK06940 short chain dehydroge 95.9 0.041 9E-07 51.6 9.1 115 40-166 3-126 (275)
352 PF00106 adh_short: short chai 95.9 0.12 2.6E-06 44.0 11.3 117 41-169 2-138 (167)
353 TIGR02354 thiF_fam2 thiamine b 95.9 0.088 1.9E-06 47.3 10.6 51 18-79 4-54 (200)
354 PRK07577 short chain dehydroge 95.9 0.042 9.1E-07 49.7 8.7 35 39-80 3-37 (234)
355 PRK12938 acetyacetyl-CoA reduc 95.9 0.084 1.8E-06 48.1 10.6 25 40-64 4-28 (246)
356 PRK09599 6-phosphogluconate de 95.8 0.12 2.5E-06 49.4 11.8 63 40-122 1-66 (301)
357 COG0569 TrkA K+ transport syst 95.8 0.014 3E-07 53.5 5.1 33 40-80 1-33 (225)
358 PRK08936 glucose-1-dehydrogena 95.8 0.084 1.8E-06 48.8 10.5 34 39-79 7-40 (261)
359 PRK07533 enoyl-(acyl carrier p 95.8 0.065 1.4E-06 49.6 9.8 36 38-80 9-46 (258)
360 TIGR02371 ala_DH_arch alanine 95.8 0.058 1.3E-06 52.2 9.7 74 38-123 127-200 (325)
361 PRK06123 short chain dehydroge 95.8 0.076 1.7E-06 48.4 9.9 33 40-79 3-35 (248)
362 PF02826 2-Hacid_dh_C: D-isome 95.8 0.17 3.7E-06 44.4 11.7 95 38-168 35-130 (178)
363 cd01065 NAD_bind_Shikimate_DH 95.8 0.065 1.4E-06 45.5 8.8 74 39-126 19-92 (155)
364 PLN02968 Probable N-acetyl-gam 95.7 0.028 6.1E-07 55.6 7.2 36 38-79 37-72 (381)
365 PRK07201 short chain dehydroge 95.7 0.068 1.5E-06 56.4 10.6 35 39-80 371-405 (657)
366 PRK09009 C factor cell-cell si 95.7 0.033 7.1E-07 50.6 7.1 23 40-62 1-23 (235)
367 PRK12748 3-ketoacyl-(acyl-carr 95.7 0.066 1.4E-06 49.3 9.2 35 38-79 4-40 (256)
368 COG0287 TyrA Prephenate dehydr 95.7 0.16 3.5E-06 48.0 11.9 67 39-122 3-71 (279)
369 PF07993 NAD_binding_4: Male s 95.7 0.054 1.2E-06 50.1 8.4 114 44-165 1-134 (249)
370 PF03949 Malic_M: Malic enzyme 95.6 0.01 2.2E-07 55.1 3.3 119 40-177 26-156 (255)
371 PRK06407 ornithine cyclodeamin 95.6 0.069 1.5E-06 51.1 9.1 74 39-123 117-190 (301)
372 PLN02256 arogenate dehydrogena 95.6 0.27 5.9E-06 47.2 13.1 64 38-122 35-99 (304)
373 PRK05854 short chain dehydroge 95.5 0.1 2.2E-06 50.0 10.2 35 39-80 14-48 (313)
374 PRK07041 short chain dehydroge 95.5 0.07 1.5E-06 48.1 8.6 112 43-165 1-123 (230)
375 PRK08291 ectoine utilization p 95.5 0.096 2.1E-06 50.8 10.0 73 39-123 132-205 (330)
376 PRK07831 short chain dehydroge 95.5 0.09 2E-06 48.6 9.5 35 39-80 17-52 (262)
377 PRK08862 short chain dehydroge 95.5 0.22 4.8E-06 45.4 11.9 45 39-92 5-49 (227)
378 cd00762 NAD_bind_malic_enz NAD 95.5 0.025 5.4E-07 52.5 5.6 120 40-178 26-157 (254)
379 PRK08618 ornithine cyclodeamin 95.5 0.08 1.7E-06 51.3 9.4 75 38-123 126-200 (325)
380 PRK06079 enoyl-(acyl carrier p 95.5 0.068 1.5E-06 49.3 8.5 35 38-79 6-42 (252)
381 COG0702 Predicted nucleoside-d 95.5 0.023 5E-07 52.6 5.4 74 40-126 1-74 (275)
382 PLN02350 phosphogluconate dehy 95.5 0.087 1.9E-06 53.8 9.7 71 39-122 6-79 (493)
383 PF02423 OCD_Mu_crystall: Orni 95.4 0.079 1.7E-06 51.0 9.0 72 38-122 127-199 (313)
384 PTZ00431 pyrroline carboxylate 95.4 0.18 3.8E-06 47.2 11.0 61 40-122 4-64 (260)
385 PRK06476 pyrroline-5-carboxyla 95.4 0.054 1.2E-06 50.5 7.4 69 40-123 1-69 (258)
386 PRK06483 dihydromonapterin red 95.4 0.081 1.7E-06 48.0 8.4 34 40-80 3-36 (236)
387 TIGR01829 AcAcCoA_reduct aceto 95.3 0.11 2.5E-06 46.9 9.3 31 41-78 2-32 (242)
388 TIGR01724 hmd_rel H2-forming N 95.3 0.56 1.2E-05 45.1 13.9 57 51-122 31-88 (341)
389 PRK06728 aspartate-semialdehyd 95.3 0.061 1.3E-06 52.4 7.5 77 35-124 1-77 (347)
390 PRK08416 7-alpha-hydroxysteroi 95.2 0.3 6.5E-06 45.1 11.8 33 39-78 8-40 (260)
391 cd05212 NAD_bind_m-THF_DH_Cycl 95.2 0.1 2.2E-06 44.2 7.7 57 37-126 26-82 (140)
392 TIGR02992 ectoine_eutC ectoine 95.2 0.13 2.8E-06 49.9 9.5 73 39-123 129-202 (326)
393 TIGR01831 fabG_rel 3-oxoacyl-( 95.2 0.084 1.8E-06 47.9 7.9 31 42-79 1-31 (239)
394 PF03435 Saccharop_dh: Sacchar 95.2 0.015 3.3E-07 57.4 3.2 74 42-126 1-78 (386)
395 PRK07589 ornithine cyclodeamin 95.2 0.13 2.7E-06 50.3 9.4 73 39-123 129-201 (346)
396 PLN02383 aspartate semialdehyd 95.1 0.067 1.5E-06 52.2 7.5 74 37-124 5-78 (344)
397 PRK06141 ornithine cyclodeamin 95.1 0.16 3.4E-06 49.0 9.9 73 38-123 124-197 (314)
398 PLN02712 arogenate dehydrogena 95.1 0.35 7.5E-06 51.5 13.3 63 39-122 52-115 (667)
399 PRK06823 ornithine cyclodeamin 95.1 0.17 3.7E-06 48.8 10.1 74 38-123 127-200 (315)
400 PRK05479 ketol-acid reductoiso 95.1 0.16 3.4E-06 49.2 9.7 65 38-122 16-80 (330)
401 PRK08017 oxidoreductase; Provi 95.1 0.15 3.3E-06 46.6 9.4 34 40-80 3-36 (256)
402 PRK14194 bifunctional 5,10-met 95.1 0.074 1.6E-06 50.7 7.3 57 38-127 158-214 (301)
403 PRK07340 ornithine cyclodeamin 95.0 0.12 2.7E-06 49.5 8.9 72 38-123 124-196 (304)
404 PRK09730 putative NAD(P)-bindi 95.0 0.13 2.9E-06 46.7 8.8 25 40-64 2-26 (247)
405 PRK05599 hypothetical protein; 95.0 0.25 5.5E-06 45.3 10.7 43 41-93 2-44 (246)
406 KOG2305 3-hydroxyacyl-CoA dehy 95.0 0.073 1.6E-06 48.4 6.7 109 40-172 4-125 (313)
407 PRK06505 enoyl-(acyl carrier p 95.0 0.13 2.7E-06 48.3 8.8 34 39-79 7-42 (271)
408 PRK14874 aspartate-semialdehyd 95.0 0.055 1.2E-06 52.6 6.5 71 40-124 2-72 (334)
409 PRK08605 D-lactate dehydrogena 94.9 0.11 2.4E-06 50.4 8.4 64 38-123 145-208 (332)
410 TIGR01289 LPOR light-dependent 94.9 0.13 2.7E-06 49.4 8.7 34 40-80 4-38 (314)
411 PRK13302 putative L-aspartate 94.9 0.096 2.1E-06 49.4 7.6 69 39-124 6-76 (271)
412 COG0002 ArgC Acetylglutamate s 94.9 0.068 1.5E-06 51.6 6.5 74 39-122 2-77 (349)
413 COG3967 DltE Short-chain dehyd 94.9 0.27 5.9E-06 44.2 9.7 118 37-166 3-139 (245)
414 PLN03129 NADP-dependent malic 94.8 0.076 1.6E-06 54.7 7.2 120 40-178 322-452 (581)
415 PRK07791 short chain dehydroge 94.8 0.19 4.1E-06 47.4 9.5 34 39-79 6-39 (286)
416 PRK15059 tartronate semialdehy 94.8 0.084 1.8E-06 50.3 7.1 62 40-122 1-62 (292)
417 PRK08507 prephenate dehydrogen 94.8 0.43 9.4E-06 44.8 11.8 65 40-122 1-65 (275)
418 PRK05671 aspartate-semialdehyd 94.8 0.079 1.7E-06 51.5 6.9 71 39-123 4-74 (336)
419 PF02882 THF_DHG_CYH_C: Tetrah 94.8 0.14 3E-06 44.4 7.6 58 37-127 34-91 (160)
420 TIGR02685 pter_reduc_Leis pter 94.8 0.35 7.7E-06 44.8 11.1 32 40-78 2-33 (267)
421 PRK14192 bifunctional 5,10-met 94.6 0.13 2.9E-06 48.8 7.8 76 16-127 139-214 (283)
422 TIGR00873 gnd 6-phosphoglucona 94.6 0.11 2.5E-06 52.7 7.8 67 41-122 1-70 (467)
423 PRK07574 formate dehydrogenase 94.6 0.23 5E-06 49.2 9.7 96 38-167 191-286 (385)
424 PRK00258 aroE shikimate 5-dehy 94.6 0.32 6.9E-06 45.9 10.4 73 39-125 123-195 (278)
425 TIGR01692 HIBADH 3-hydroxyisob 94.6 0.2 4.3E-06 47.5 8.9 60 44-123 1-60 (288)
426 COG3320 Putative dehydrogenase 94.5 0.36 7.8E-06 47.2 10.6 112 40-159 1-129 (382)
427 PRK13243 glyoxylate reductase; 94.5 0.24 5.3E-06 48.1 9.6 94 38-167 149-242 (333)
428 cd01080 NAD_bind_m-THF_DH_Cycl 94.5 0.12 2.5E-06 45.2 6.6 56 38-127 43-99 (168)
429 PRK07984 enoyl-(acyl carrier p 94.4 0.16 3.6E-06 47.3 8.0 34 39-79 6-41 (262)
430 PRK06199 ornithine cyclodeamin 94.4 0.24 5.3E-06 49.0 9.5 77 38-123 154-231 (379)
431 PRK08303 short chain dehydroge 94.4 0.24 5.1E-06 47.4 9.2 34 39-79 8-41 (305)
432 PLN02712 arogenate dehydrogena 94.4 0.62 1.3E-05 49.6 13.0 64 38-122 368-432 (667)
433 cd01079 NAD_bind_m-THF_DH NAD 94.4 0.11 2.4E-06 46.4 6.2 78 38-127 61-138 (197)
434 PRK14106 murD UDP-N-acetylmura 94.4 0.22 4.9E-06 50.1 9.4 77 38-127 4-80 (450)
435 PRK08818 prephenate dehydrogen 94.4 0.38 8.2E-06 47.4 10.6 55 39-122 4-58 (370)
436 cd05311 NAD_bind_2_malic_enz N 94.4 0.61 1.3E-05 42.7 11.4 77 39-124 25-106 (226)
437 PRK00048 dihydrodipicolinate r 94.4 0.11 2.4E-06 48.5 6.6 65 40-122 2-67 (257)
438 PRK07370 enoyl-(acyl carrier p 94.3 0.18 4E-06 46.7 8.0 34 39-79 6-41 (258)
439 cd01487 E1_ThiF_like E1_ThiF_l 94.3 0.16 3.5E-06 44.6 7.2 33 41-80 1-33 (174)
440 PRK06598 aspartate-semialdehyd 94.3 0.12 2.6E-06 50.8 6.9 73 40-124 2-74 (369)
441 TIGR02356 adenyl_thiF thiazole 94.3 0.13 2.8E-06 46.2 6.7 34 39-79 21-54 (202)
442 PRK06046 alanine dehydrogenase 94.3 0.26 5.6E-06 47.7 9.2 74 38-123 128-201 (326)
443 PRK13940 glutamyl-tRNA reducta 94.2 0.14 3.1E-06 51.2 7.5 74 39-127 181-254 (414)
444 COG0345 ProC Pyrroline-5-carbo 94.2 0.16 3.5E-06 47.7 7.3 68 40-122 2-69 (266)
445 PRK14175 bifunctional 5,10-met 94.2 0.17 3.6E-06 48.0 7.5 58 37-127 156-213 (286)
446 PRK13529 malate dehydrogenase; 94.2 0.1 2.3E-06 53.5 6.5 120 40-178 296-433 (563)
447 PRK15469 ghrA bifunctional gly 94.2 0.3 6.5E-06 47.0 9.4 94 38-167 135-228 (312)
448 PLN00016 RNA-binding protein; 94.2 0.061 1.3E-06 52.9 4.7 36 38-80 51-90 (378)
449 TIGR01035 hemA glutamyl-tRNA r 94.1 0.12 2.7E-06 51.7 6.9 73 39-127 180-252 (417)
450 PRK08664 aspartate-semialdehyd 94.1 0.15 3.3E-06 49.8 7.3 34 39-78 3-36 (349)
451 PRK08594 enoyl-(acyl carrier p 94.1 0.5 1.1E-05 43.8 10.5 34 39-79 7-42 (257)
452 PRK08159 enoyl-(acyl carrier p 94.1 0.24 5.1E-06 46.4 8.3 34 39-79 10-45 (272)
453 PRK14179 bifunctional 5,10-met 94.1 0.16 3.5E-06 48.1 7.0 57 38-127 157-213 (284)
454 smart00822 PKS_KR This enzymat 94.1 0.43 9.3E-06 40.2 9.3 115 41-165 2-135 (180)
455 PRK12475 thiamine/molybdopteri 94.0 0.2 4.3E-06 48.8 7.9 35 39-80 24-58 (338)
456 PRK07688 thiamine/molybdopteri 94.0 0.19 4.2E-06 48.9 7.7 34 39-79 24-57 (339)
457 PRK14189 bifunctional 5,10-met 93.9 0.21 4.6E-06 47.3 7.5 58 37-127 156-213 (285)
458 PTZ00317 NADP-dependent malic 93.9 0.18 3.9E-06 51.8 7.5 120 40-178 298-432 (559)
459 PRK00436 argC N-acetyl-gamma-g 93.9 0.16 3.4E-06 49.6 6.9 23 40-62 3-25 (343)
460 COG2423 Predicted ornithine cy 93.9 0.32 7E-06 47.1 8.9 73 39-122 130-202 (330)
461 TIGR01850 argC N-acetyl-gamma- 93.7 0.17 3.7E-06 49.4 6.8 74 40-123 1-76 (346)
462 PRK00045 hemA glutamyl-tRNA re 93.7 0.19 4.2E-06 50.4 7.4 73 39-127 182-254 (423)
463 PRK06603 enoyl-(acyl carrier p 93.7 0.56 1.2E-05 43.4 10.0 33 40-79 9-43 (260)
464 PRK05476 S-adenosyl-L-homocyst 93.7 0.91 2E-05 45.6 11.9 83 18-124 194-276 (425)
465 PRK14806 bifunctional cyclohex 93.6 0.42 9.1E-06 51.4 10.2 68 40-123 4-71 (735)
466 TIGR01500 sepiapter_red sepiap 93.6 0.28 6.2E-06 45.2 7.8 43 41-92 2-48 (256)
467 TIGR03443 alpha_am_amid L-amin 93.6 0.46 9.9E-06 54.7 11.1 112 39-154 971-1099(1389)
468 PRK10792 bifunctional 5,10-met 93.6 0.28 6.1E-06 46.5 7.7 57 38-127 158-214 (285)
469 PRK14173 bifunctional 5,10-met 93.4 0.21 4.5E-06 47.4 6.5 58 37-127 153-210 (287)
470 PLN03139 formate dehydrogenase 93.4 0.73 1.6E-05 45.7 10.6 96 38-167 198-293 (386)
471 PRK14193 bifunctional 5,10-met 93.4 0.25 5.4E-06 46.8 7.0 57 38-127 157-215 (284)
472 COG1712 Predicted dinucleotide 93.4 0.45 9.8E-06 43.3 8.2 96 40-168 1-96 (255)
473 PF00899 ThiF: ThiF family; I 93.3 0.11 2.4E-06 43.3 4.1 34 40-80 3-36 (135)
474 PF00670 AdoHcyase_NAD: S-aden 93.3 0.41 8.9E-06 41.5 7.6 68 38-126 22-89 (162)
475 TIGR00465 ilvC ketol-acid redu 93.3 0.3 6.6E-06 47.0 7.6 64 39-122 3-66 (314)
476 PRK08644 thiamine biosynthesis 93.3 0.26 5.7E-06 44.6 6.8 34 39-79 28-61 (212)
477 PLN00203 glutamyl-tRNA reducta 93.3 0.25 5.3E-06 50.9 7.3 75 39-126 266-340 (519)
478 PRK14188 bifunctional 5,10-met 93.2 0.28 6.2E-06 46.8 7.2 57 38-127 157-213 (296)
479 PRK08040 putative semialdehyde 93.2 0.24 5.3E-06 48.1 6.8 73 38-124 3-75 (336)
480 TIGR00936 ahcY adenosylhomocys 93.2 1.2 2.6E-05 44.5 11.7 83 18-124 177-259 (406)
481 PRK06997 enoyl-(acyl carrier p 93.2 0.77 1.7E-05 42.5 10.0 33 39-78 6-40 (260)
482 PRK14176 bifunctional 5,10-met 93.1 0.32 7E-06 46.1 7.3 58 37-127 162-219 (287)
483 cd01075 NAD_bind_Leu_Phe_Val_D 93.1 0.56 1.2E-05 42.1 8.6 35 38-80 27-61 (200)
484 PRK03659 glutathione-regulated 93.1 0.46 1E-05 49.9 9.2 138 39-215 400-543 (601)
485 PRK14190 bifunctional 5,10-met 93.1 0.27 5.9E-06 46.5 6.7 58 37-127 156-213 (284)
486 TIGR01296 asd_B aspartate-semi 93.0 0.18 3.9E-06 49.1 5.7 71 41-125 1-71 (339)
487 cd00401 AdoHcyase S-adenosyl-L 93.0 1.2 2.7E-05 44.5 11.6 107 18-167 184-291 (413)
488 PRK13304 L-aspartate dehydroge 93.0 0.38 8.2E-06 45.2 7.6 67 40-123 2-69 (265)
489 COG0373 HemA Glutamyl-tRNA red 93.0 0.34 7.4E-06 48.2 7.5 73 39-127 178-250 (414)
490 PRK12557 H(2)-dependent methyl 93.0 1.5 3.1E-05 42.9 11.9 58 51-122 31-88 (342)
491 KOG1210 Predicted 3-ketosphing 92.9 2.6 5.7E-05 40.3 12.9 145 12-166 6-172 (331)
492 PRK14177 bifunctional 5,10-met 92.9 0.34 7.4E-06 45.9 7.1 58 37-127 157-214 (284)
493 PRK14172 bifunctional 5,10-met 92.9 0.35 7.5E-06 45.7 7.1 58 37-127 156-213 (278)
494 PRK06444 prephenate dehydrogen 92.8 0.21 4.6E-06 44.8 5.4 25 40-64 1-25 (197)
495 KOG0409 Predicted dehydrogenas 92.8 0.48 1E-05 45.0 7.8 68 39-126 35-102 (327)
496 PRK06718 precorrin-2 dehydroge 92.8 0.4 8.7E-06 43.1 7.2 74 30-123 3-78 (202)
497 PRK13581 D-3-phosphoglycerate 92.8 0.69 1.5E-05 47.9 9.9 64 38-123 139-202 (526)
498 TIGR02853 spore_dpaA dipicolin 92.8 0.4 8.8E-06 45.6 7.6 68 38-123 150-217 (287)
499 PLN02928 oxidoreductase family 92.7 0.39 8.4E-06 47.0 7.5 105 39-167 159-264 (347)
500 PF00185 OTCace: Aspartate/orn 92.6 1.2 2.6E-05 38.4 9.7 77 39-122 2-80 (158)
No 1
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=2.2e-70 Score=524.12 Aligned_cols=320 Identities=65% Similarity=1.010 Sum_probs=290.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
++|.||+||||+|+||+++++.|+.+++++.+...+++|+|++++.+++.|+++|+.|+..+..+++.++.+.+++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 35789999997799999999999988887655566999999976556689999999999865555667777889999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCC-CCCCCceeecccchH
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-SIPAKNITCLTRLDH 195 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s-~~~~~ki~~gt~lds 195 (366)
|+||++||.|+++|++|.+++..|+++++++++.+.++++|+++++++|||+|+||++++++ + |||++|++|+|.|||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~-s~g~p~~rViG~t~LDs 159 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKN-APDIPPKNFSAMTRLDH 159 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCHHHEEEeeHHHH
Confidence 99999999999999999999999999999999999999833999999999999999999998 6 999999666699999
Q ss_pred HHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCC
Q 017740 196 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 275 (366)
Q Consensus 196 ~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~ 275 (366)
+|||+++|++++++|++|++++||||||++++|+||++++ +|+|+.+++.++.|.++++.+++++++++|++.||+
T Consensus 160 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~ 235 (323)
T TIGR01759 160 NRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATV----DGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGA 235 (323)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEE----CCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCC
Confidence 9999999999999999998777899999999999999999 999999998776566789999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCC-ccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 017740 276 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 353 (366)
Q Consensus 276 s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g-~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~ 353 (366)
++|+++|+++++++++++.+.++++++|+|++++| +||+|+++|||+||++| +|+++++++++|+++|+++|++|++.
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~ 315 (323)
T TIGR01759 236 SSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDE 315 (323)
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 98878889999988887775323889999999999 99998899999999999 99999996599999999999999999
Q ss_pred HHHHHHHH
Q 017740 354 LAEEKTLA 361 (366)
Q Consensus 354 i~~~i~~~ 361 (366)
|+++++++
T Consensus 316 lk~~~~~~ 323 (323)
T TIGR01759 316 LLEEKEEA 323 (323)
T ss_pred HHHHHhcC
Confidence 99999764
No 2
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-70 Score=521.46 Aligned_cols=325 Identities=60% Similarity=0.949 Sum_probs=292.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
++|+||+||||+|+||+++++.|+.+++++.+.+.+++|+|++++++++.|+++|+.|+.++...++.++.+.+++++||
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da 81 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA 81 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence 46789999997799999999999988887644456999999976556789999999999866555667778889999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCceeecccchHH
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 196 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki~~gt~lds~ 196 (366)
|+||++||.|+++|++|.+++..|+++++++++.+.++++|+++++++|||+|+||++++++++|||++|++|.|.|||+
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~ 161 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHN 161 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEeeeHHHHH
Confidence 99999999999999999999999999999999999998867999999999999999999998339999996555999999
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCCC
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 276 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~s 276 (366)
||++++|++++++|++|++++||||||++++|+||++++ +|+|+.+++.+++|..+++.+++++++++|++.||++
T Consensus 162 R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t 237 (326)
T PRK05442 162 RALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATI----DGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGAS 237 (326)
T ss_pred HHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEE----CCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCc
Confidence 999999999999999999987799999999999999999 9999999987766778899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 017740 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356 (366)
Q Consensus 277 ~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~ 356 (366)
+|.++++++++++++++.++++++|+|+|++++|+||+|+++|||+||++|+|+++++++++|+++|+++|++|++.|++
T Consensus 238 ~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig~Gv~~iv~~l~L~~~E~~~l~~s~~~l~~ 317 (326)
T PRK05442 238 SAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCENGEYEIVQGLEIDDFSREKIDATLAELEE 317 (326)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEcCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 88755444688888877753268999999999999999889999999999999999976699999999999999999999
Q ss_pred HHHHHhhhh
Q 017740 357 EKTLAYSCL 365 (366)
Q Consensus 357 ~i~~~~~~~ 365 (366)
+.+++..+|
T Consensus 318 ~~~~~~~~~ 326 (326)
T PRK05442 318 ERDAVKHLL 326 (326)
T ss_pred HHHHHHhhC
Confidence 999887654
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=6e-70 Score=511.87 Aligned_cols=307 Identities=32% Similarity=0.449 Sum_probs=281.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeC-CHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT-DVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~-~l~~al~~aDi 118 (366)
+||+|||| |.||+++++.|+..++.. |++|+|+++ +.++|.++|+.|+.++...+..++. +.+++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~-----el~LiDi~~--~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGS-----ELVLIDINE--EKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccc-----eEEEEEccc--ccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 49999996 999999999996655533 899999984 6789999999999876655555544 34799999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNR 197 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R 197 (366)
|+++||.||+|||+|+|++..|+++++++++++.+++ |+++++|+|||+|+|||++|++ +|+|++| |+++|.|||+|
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~ty~~~k~-sg~p~~rvig~gt~LDsaR 150 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILTYIAMKF-SGFPKNRVIGSGTVLDSAR 150 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHHHHHHHh-cCCCccceecccchHHHHH
Confidence 9999999999999999999999999999999999998 8999999999999999999998 8999999 89999999999
Q ss_pred HHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccc-cCccchHHHHHHHHhhHHHHHHhcCCC
Q 017740 198 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVA-DDNWLNTEFITTVQQRGAAIIKARKLS 276 (366)
Q Consensus 198 ~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~-~~~~~~~~i~~~v~~~~~~i~~~kg~s 276 (366)
|+++||++++++|++|+++ |+||||+++||+||+++| +|+|+.++++ .+.|..+++.+++|++|++|++.||+.
T Consensus 151 ~~~~lae~~~v~~~~V~~~-ViGeHGdt~vp~~S~a~v----~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~~ 225 (313)
T COG0039 151 FRTFLAEKLGVSPKDVHAY-VIGEHGDTMVPLWSQATV----GGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGAG 225 (313)
T ss_pred HHHHHHHHhCCChhHceee-EeccCCCceEEeeeeeeE----CCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCcc
Confidence 9999999999999999987 579999999999999999 9999999998 567788999999999999999999865
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 017740 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 355 (366)
Q Consensus 277 ~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~ 355 (366)
+++++|.+++++.++++. |+++|+|+|++++|+||+ +|+|||+|+++| +|++++++ ++|+++|+++|++|++.++
T Consensus 226 t~~~~A~a~a~~~~ail~--d~~~vl~~s~~l~G~yg~-~dv~~gvP~~lg~~Gv~~iie-~~l~~~E~~~l~~s~~~lk 301 (313)
T COG0039 226 TYYGPAAALARMVEAILR--DEKRVLPVSVYLDGEYGV-EDVYFGVPAVLGKNGVEEILE-LLLSDDEQEKLDKSAEELK 301 (313)
T ss_pred chhhHHHHHHHHHHHHHc--CCCceEEEEEeecCccCc-CCeEEEeeEEEcCCCcEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 678999999998887776 468999999999999995 899999999999 99999995 9999999999999999999
Q ss_pred HHHHHHhhhh
Q 017740 356 EEKTLAYSCL 365 (366)
Q Consensus 356 ~~i~~~~~~~ 365 (366)
+.++.+..++
T Consensus 302 ~~i~~~~~~~ 311 (313)
T COG0039 302 KNIELVKELV 311 (313)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 4
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=6.4e-69 Score=521.47 Aligned_cols=324 Identities=43% Similarity=0.697 Sum_probs=296.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
+++.||+||||+|+||+++++.|+.+++++++.++.++|+|.+.++++++|+++|+.|+.++...++.++++.+++++||
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kda 121 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDA 121 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCC
Confidence 34689999997799999999999999988765567889996665668899999999999866656777777788999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchH
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDH 195 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds 195 (366)
|+||++||.|+++|++|.+++..|+++++++++.+.++++|++++|++|||+|+||++++++ +|++++| ||+||.|||
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~-sg~~~~rviG~gT~LDs 200 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKN-APNIPRKNFHALTRLDE 200 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHH-cCCCcccEEEecchhHH
Confidence 99999999999999999999999999999999999998779999999999999999999998 7888888 899999999
Q ss_pred HHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCC
Q 017740 196 NRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 275 (366)
Q Consensus 196 ~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~ 275 (366)
+|++++||++++++|++|+..+||||||+++||+||+++| +|+|+.+++.++.|.++++.+++++++++|++.||+
T Consensus 201 aR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V----~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG~ 276 (387)
T TIGR01757 201 NRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI----GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWGR 276 (387)
T ss_pred HHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE----CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999996455799999999999999999 999999998776777899999999999999999998
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCc-cCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 017740 276 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 353 (366)
Q Consensus 276 s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~-ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~ 353 (366)
++++++|.++++.+.+|+.|.|+++|+|+|++++|+ ||+++|+|||+||++| +|+++++.+++|+++|+++|++|++.
T Consensus 277 t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~ 356 (387)
T TIGR01757 277 SSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDE 356 (387)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 888889999999999999777889999999999996 9988899999999999 99999963599999999999999999
Q ss_pred HHHHHHHHhhhh
Q 017740 354 LAEEKTLAYSCL 365 (366)
Q Consensus 354 i~~~i~~~~~~~ 365 (366)
|+++.+.+..++
T Consensus 357 L~~e~~~~~~~~ 368 (387)
T TIGR01757 357 LLKEKECVAHLI 368 (387)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 5
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=9.6e-68 Score=520.16 Aligned_cols=322 Identities=42% Similarity=0.653 Sum_probs=294.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCe--EEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPV--ILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 114 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~--ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~ 114 (366)
+++.||+||||+|+||+++++.|+.+++++.+... +|+|+|+++ ++++|+++|+.|+.++...++.++++.+++++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~--~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSK--QALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCc--chhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 34689999997799999999999998676643323 899999875 68899999999998666667777777899999
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccc
Q 017740 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRL 193 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~l 193 (366)
|||+||+++|.|+++|++|.|++..|+++++++++.|.+++.|++++|++|||+|+||+++++. +|++++| ||+||.|
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~-sg~~~~rViGtgT~L 254 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN-APNIPAKNFHALTRL 254 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHH-cCCCCcceEEeeccH
Confidence 9999999999999999999999999999999999999995349999999999999999999998 7888888 8999999
Q ss_pred hHHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhc
Q 017740 194 DHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR 273 (366)
Q Consensus 194 ds~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k 273 (366)
||+||+++||++++++|++|++++||||||+++||+||+++| +|+|+.+++.+++|.++++.++++++|++|++.|
T Consensus 255 DsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V----~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k 330 (444)
T PLN00112 255 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKI----NGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW 330 (444)
T ss_pred HHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEE----CCccHHHhhccccchHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999997766899999999999999999 9999999988777888999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCC-ccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHH
Q 017740 274 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATA 351 (366)
Q Consensus 274 g~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g-~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa 351 (366)
|+++++++|.++++.+.+|+.++|+++|+|+|++++| +||+++|+|||+||++| +|+++++++++|+++|+++|++|+
T Consensus 331 G~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~Sa 410 (444)
T PLN00112 331 GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSE 410 (444)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHHH
Confidence 9888888999999999999877788999999999999 59988999999999999 999999955999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 017740 352 EELAEEKTLAYSCL 365 (366)
Q Consensus 352 ~~i~~~i~~~~~~~ 365 (366)
++|+++.+.+..++
T Consensus 411 ~~L~~e~~~~~~~~ 424 (444)
T PLN00112 411 AELLAEKRCVAHLT 424 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886654
No 6
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1e-66 Score=499.60 Aligned_cols=315 Identities=60% Similarity=0.915 Sum_probs=283.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVI 120 (366)
||+||||+|+||+++++.|+.+++++.+...+++|+|++++.+.+++.++|+.|..++..+++.++.+.+++++|||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 89999988999999999999888876434457999999753356789999999997666555667778899999999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCC-CCCCceeecccchHHHHH
Q 017740 121 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPS-IPAKNITCLTRLDHNRAM 199 (366)
Q Consensus 121 i~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~-~~~~ki~~gt~lds~R~~ 199 (366)
++||.|+++|++|.+++..|+++++++++.++++++|+++++++|||+|+||++++++ +| +|++||+++|.|||+|||
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~-sg~~p~~~vig~t~LDs~R~r 160 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKN-APNLPPKNFTALTRLDHNRAK 160 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCHHHEEEeeHHHHHHHH
Confidence 9999999999999999999999999999999999658999999999999999999998 78 699997677999999999
Q ss_pred HHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcc---ccCccchHHHHHHHHhhHHHHHHhcCCC
Q 017740 200 GQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAV---ADDNWLNTEFITTVQQRGAAIIKARKLS 276 (366)
Q Consensus 200 ~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~---~~~~~~~~~i~~~v~~~~~~i~~~kg~s 276 (366)
+++|++++++|++|++++||||||++++|+||+++| +|+|+.++. .+++|..+++.+++++++++|++.||++
T Consensus 161 ~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t 236 (323)
T cd00704 161 AQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVV----YGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGAS 236 (323)
T ss_pred HHHHHHhCcCHHHceeeeEEecccCceeecccccee----cCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcc
Confidence 999999999999998777899999999999999999 999998875 3345667899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCcc-CCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 017740 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 354 (366)
Q Consensus 277 ~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~y-gi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i 354 (366)
+++++|+++++++.+++.+.+.++++|||++++|+| |+|+|+|||+||++| +|+.+++ +++|+++|+++|++|++.|
T Consensus 237 ~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~s~~~l 315 (323)
T cd00704 237 SAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKATEEEL 315 (323)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 887789999999988887543238999999999999 998899999999999 9998888 5999999999999999999
Q ss_pred HHHHHHH
Q 017740 355 AEEKTLA 361 (366)
Q Consensus 355 ~~~i~~~ 361 (366)
+++.+++
T Consensus 316 ~~~~~~~ 322 (323)
T cd00704 316 IEEKEIA 322 (323)
T ss_pred HHHHHhh
Confidence 9998876
No 7
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.4e-66 Score=495.81 Aligned_cols=318 Identities=57% Similarity=0.887 Sum_probs=288.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
|+||+||||+|+||+++++.|+.+++++.+.+.+++|+|++++.++++|+++|+.|+.++...++.++++.+++++|||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 57999999779999999999999888875566799999997765668999999999986655567777788999999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCC-CCCCCceeecccchHHH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-SIPAKNITCLTRLDHNR 197 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s-~~~~~ki~~gt~lds~R 197 (366)
||++||.|+++|++|.+++..|+++++++++.+.++++|++++|++|||+|+||+++++. + ++|++++.|.|.||++|
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~-sg~~p~~~ViG~t~LDs~R 160 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKN-APDIPPDNFTAMTRLDHNR 160 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHH-cCCCChHheEEehHHHHHH
Confidence 999999999999999999999999999999999999844999999999999999999998 6 59999965559999999
Q ss_pred HHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCCCc
Q 017740 198 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSS 277 (366)
Q Consensus 198 ~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~s~ 277 (366)
|++.+|+++++++.+|++++|||+||++++|+||++++ +|+|+.+++.+++|..+++.+++++++++|++.||+++
T Consensus 161 l~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~ 236 (322)
T cd01338 161 AKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATI----GGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASS 236 (322)
T ss_pred HHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEE----CCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCcc
Confidence 99999999999999999988899999999999999999 99999988776667688999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 017740 278 ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAE 356 (366)
Q Consensus 278 ~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~ 356 (366)
+.++++++++++++++.+.++++++|+|++++|+||+|+++|||+||++| +|+.+++ +++|+++|+++|++|++.|++
T Consensus 237 ~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~l~~ 315 (322)
T cd01338 237 AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVE-GLEIDDFAREKIDATLAELLE 315 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEe-CCCCCHHHHHHHHHHHHHHHH
Confidence 86544699998888877543379999999999999998999999999999 9998888 499999999999999999999
Q ss_pred HHHHHh
Q 017740 357 EKTLAY 362 (366)
Q Consensus 357 ~i~~~~ 362 (366)
+.+++.
T Consensus 316 ~~~~~~ 321 (322)
T cd01338 316 EREAVK 321 (322)
T ss_pred HHHHhh
Confidence 988753
No 8
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.3e-66 Score=494.08 Aligned_cols=318 Identities=70% Similarity=1.070 Sum_probs=287.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
|.||+||||+|+||+++++.|+.+++++++...+++|+|++++.+++.+.++|+.|+..+...++..+.+++++++|||+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 57999999889999999999998877643233489999997654557888999999876655577777788899999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCceeecccchHHHH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRA 198 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki~~gt~lds~R~ 198 (366)
||++||.|++++++|.+++..|+++++++++.++++++|+++++++|||+|+||++++++++++|+++||+||.||++|+
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R~ 161 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRA 161 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHHH
Confidence 99999999999999999999999999999999999976799999999999999999999866888888999999999999
Q ss_pred HHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCC----CcchhhccccCccchHHHHHHHHhhHHHHHHhcC
Q 017740 199 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKG----EKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 274 (366)
Q Consensus 199 ~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~----~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg 274 (366)
++++|++++++|++|++++||||||++++|+||+++| + |+|+.+++.++.|..+++.+++++++++|++.|+
T Consensus 162 r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v----~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~ 237 (325)
T cd01336 162 KSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATV----ELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARK 237 (325)
T ss_pred HHHHHHHhCcChhhceEeEEEEcCCCCeeecccccee----ecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccc
Confidence 9999999999999998887899999999999999999 8 9999999887667789999999999999999766
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 017740 275 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 353 (366)
Q Consensus 275 ~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~ 353 (366)
.++++++|.++++++++++.+.++++++|+|++++|+||+|+++|||+||++| +|+.+++ +++|+++|+++|++|++.
T Consensus 238 g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~~ 316 (325)
T cd01336 238 LSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQ-GLSIDDFSREKIDATAKE 316 (325)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHHH
Confidence 56677899999998888887544689999999999999998899999999999 9998888 499999999999999999
Q ss_pred HHHHHHHH
Q 017740 354 LAEEKTLA 361 (366)
Q Consensus 354 i~~~i~~~ 361 (366)
|+++++.+
T Consensus 317 l~~e~~~~ 324 (325)
T cd01336 317 LVEEKETA 324 (325)
T ss_pred HHHHHHhh
Confidence 99999875
No 9
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=2e-65 Score=490.98 Aligned_cols=317 Identities=69% Similarity=1.079 Sum_probs=282.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVI 120 (366)
||+||||+|+||+++++.|+.+++++.++..+++|+|++++.++++++++|+.|+..+....+..+++.+++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999987999999999999888765323347999999765556889999999988655555555557789999999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCC-CceeecccchHHHHH
Q 017740 121 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPA-KNITCLTRLDHNRAM 199 (366)
Q Consensus 121 i~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~-~ki~~gt~lds~R~~ 199 (366)
++||.|++++++|.+++..|+++++++++.+.++++|+++++++|||+|+||++++++ +|+++ +.||+||.|||+|||
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~-sg~~~~~vig~gt~LDs~R~r 159 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNY-APSIPPKNFSALTRLDHNRAL 159 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHH-cCCCCcceEEEeeehHHHHHH
Confidence 9999999999999999999999999999999999558999999999999999999998 65444 448999999999999
Q ss_pred HHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCC-C---cchhhccccCccchHHHHHHHHhhHHHHHHhcCC
Q 017740 200 GQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKG-E---KPVREAVADDNWLNTEFITTVQQRGAAIIKARKL 275 (366)
Q Consensus 200 ~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~-~---~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~ 275 (366)
+++|++++++|++|++++||||||++++|+||+++| + | +|+.+++.++.|.++++.+++++++++|++.||.
T Consensus 160 ~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v----~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~ 235 (324)
T TIGR01758 160 AQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATV----TKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARKL 235 (324)
T ss_pred HHHHHHhCCChhhceEeEEEECCCCCccccccccee----cCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccCC
Confidence 999999999999998766899999999999999999 8 9 9999998765566789999999999999998886
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCc-cCCCCceEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 017740 276 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEEL 354 (366)
Q Consensus 276 s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~-ygi~~~~~~s~Pv~lg~Gv~~~~~~~~Ls~~E~~~l~~sa~~i 354 (366)
++++++|.++++++++++.+.|+++++|+|++++|+ ||+|+++|||+||++|+|+++++.+++|+++|+++|++|++.|
T Consensus 236 ~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~l 315 (324)
T TIGR01758 236 SSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKEL 315 (324)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHHH
Confidence 777899999999998888655789999999999999 9998899999999999777777766999999999999999999
Q ss_pred HHHHHHHh
Q 017740 355 AEEKTLAY 362 (366)
Q Consensus 355 ~~~i~~~~ 362 (366)
++.++++.
T Consensus 316 k~~~~~~~ 323 (324)
T TIGR01758 316 EEERDEAL 323 (324)
T ss_pred HHHHHHhh
Confidence 99998874
No 10
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.8e-65 Score=483.45 Aligned_cols=298 Identities=20% Similarity=0.315 Sum_probs=269.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCCHhhhhCCCcEE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~l~~al~~aDiV 119 (366)
||+|+|| |+||+++|+.|+.+++.+ +++|+|+++ ++++|+++||.|..... ..++.++.+.+++++|||+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~-----elvL~Di~~--~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFS-----EIVLIDVNE--GVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCC-----EEEEEeCCc--chhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEE
Confidence 7999995 999999999999888766 999999975 57899999999975422 23555555668999999999
Q ss_pred EEecCCCCCCCCC--hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHH
Q 017740 120 VMVGGFPRKEGME--RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 196 (366)
Q Consensus 120 Ii~aG~~~~~g~~--r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~ 196 (366)
|++||.|+++|++ |.|++..|+++++++++.+.+++ |+++++++|||+|+||++++++ +|||++| ||.||.|||+
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~-sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATE-FDYPANKVIGTGTMLDTA 150 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHH-hCcChhheecccchHHHH
Confidence 9999999999999 69999999999999999999998 9999999999999999999998 8999999 7888999999
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcccc---CccchHHHHHHHHhhHHHHHHhc
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD---DNWLNTEFITTVQQRGAAIIKAR 273 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~---~~~~~~~i~~~v~~~~~~i~~~k 273 (366)
||++++|++++++|++|+++ ||||||++++|+||+++| +|+|+.+++.. +.|..+++.+++++++++|++.|
T Consensus 151 R~~~~la~~l~v~~~~V~~~-ViGeHGds~vp~wS~~~v----~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K 225 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTGY-VLGEHGSHAFPVWSLVNI----AGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK 225 (307)
T ss_pred HHHHHHHHHhCCCcccEEEE-EEecCCCceEEeeeeeEE----CCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 699999999999999999 99999998752 23457899999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 017740 274 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 352 (366)
Q Consensus 274 g~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~ 352 (366)
|.|+| ++|.++++++.+++. |+++++|+|++++|+|| ++++|||+||++| +|++++++ ++|+++|+++|++|++
T Consensus 226 G~t~~-~ia~a~~~ii~ail~--d~~~v~~vsv~~~G~yg-~~~v~~svP~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~ 300 (307)
T cd05290 226 GWTNA-GIAKSASRLIKAILL--DERSILPVCTLLSGEYG-LSDVALSLPTVIGAKGIERVLE-IPLDEWELEKLHKSAK 300 (307)
T ss_pred CeehH-HHHHHHHHHHHHHHh--CCCeEEEEEEeeCCccC-CCCEEEEEEEEEeCCCceEecC-CCCCHHHHHHHHHHHH
Confidence 98765 578899988877665 46899999999999999 4899999999999 99999995 9999999999999999
Q ss_pred HHHHHH
Q 017740 353 ELAEEK 358 (366)
Q Consensus 353 ~i~~~i 358 (366)
.|++.+
T Consensus 301 ~i~~~~ 306 (307)
T cd05290 301 AIRETI 306 (307)
T ss_pred HHHHHh
Confidence 999875
No 11
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.7e-64 Score=493.11 Aligned_cols=315 Identities=34% Similarity=0.588 Sum_probs=285.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
+|.+|+||||+|.+|++|..+++.+.++|.+.++.|+|+|+.+++++++|.++|+.|+.++...++.++++.+++++|||
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daD 201 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAH 201 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCC
Confidence 46899999999999999999999999999888899999999666688999999999999877767788888899999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCC-CcEEEEEcCCcchHHHHHHHHCCCCCCCceeecccchHH
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP-NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 196 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~-~~~viv~tNPv~~~t~~~~~~~s~~~~~ki~~gt~lds~ 196 (366)
+||+++|.|+++|++|.|++..|+++++++++++.+++++ +.++++.|||+|++|++++++++|+|++||++.+.+|++
T Consensus 202 vvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gtlds~ 281 (452)
T cd05295 202 VIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQEN 281 (452)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecchHHH
Confidence 9999999999999999999999999999999999999832 667788889999999999998559999997666668899
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCC------------cchhhccccCccchHHHHHHHHh
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGE------------KPVREAVADDNWLNTEFITTVQQ 264 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~------------~p~~~~~~~~~~~~~~i~~~v~~ 264 (366)
|++++||+++|++|++|+.++||||||+++||+||+++| +| +|+.+++.++.|..+++.+.+++
T Consensus 282 R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V----~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~ 357 (452)
T cd05295 282 RAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARV----YRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKS 357 (452)
T ss_pred HHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEE----cccccccccccccCccHHHHhcchhhhHHHHHHHHHH
Confidence 999999999999999998777899999999999999999 55 99999987777878899999999
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHH
Q 017740 265 RGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFS 343 (366)
Q Consensus 265 ~~~~i~~~kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E 343 (366)
++. ++|| ++++++|.|+++++++|+.++++++|+|+|++++|+||+|+|+|||+||++| +|+..+. +++|+++|
T Consensus 358 rg~---~rkg-sT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~-~L~L~e~E 432 (452)
T cd05295 358 LSS---SLNH-EAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVT-DLELSEIL 432 (452)
T ss_pred HHH---hccC-ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEe-CCCCCHHH
Confidence 888 5555 6668899999999999998765689999999999999999999999999999 5555555 69999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017740 344 RAKMDATAEELAEEKTLA 361 (366)
Q Consensus 344 ~~~l~~sa~~i~~~i~~~ 361 (366)
+++|++|+++|+++.+.+
T Consensus 433 ~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 433 REVLKRITSDLIQEKLVA 450 (452)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998776
No 12
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=3.8e-63 Score=470.80 Aligned_cols=305 Identities=88% Similarity=1.284 Sum_probs=270.6
Q ss_pred HHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHh
Q 017740 59 IARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMS 138 (366)
Q Consensus 59 L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~ 138 (366)
|+.+.++|.+.+..++|+|+++++++++|+++|+.|+..+...++..+++.+++++|||+||++||.|+++|++|.+++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 34566777667779999999876678999999999988655556666677789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHHHHHHHHHHhCCCCCCeeeeE
Q 017740 139 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQISERLKVHVSDVKNVI 217 (366)
Q Consensus 139 ~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R~~~~la~~l~v~~~~v~~~~ 217 (366)
.|+++++++++.+.+++.|+++++++|||+|+||+++++. +|+|++| ||+||.|||+||+++||++++++|++|+..+
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~-sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~ 160 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEF-APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVI 160 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHH-cCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeE
Confidence 9999999999999996349999999999999999999998 8999988 8999999999999999999999999994334
Q ss_pred EEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCCC
Q 017740 218 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 297 (366)
Q Consensus 218 ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~s~~~s~a~a~~~~i~~~i~~~~ 297 (366)
||||||++++|+||+++|+...+|+|+.+++.+++|+++++.+++++++++|++.|+.++++++|.++++++++++.+.|
T Consensus 161 VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~ 240 (309)
T PLN00135 161 IWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 240 (309)
T ss_pred EEEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCc
Confidence 79999999999999999953337999999876655778999999999999999984445567899999999988887545
Q ss_pred CCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017740 298 KGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 365 (366)
Q Consensus 298 ~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~~i~~~~~~~ 365 (366)
+++|+|+|++++|+||+|+++|||+||++| +|+..++ +++|+++|+++|++|++.|+++.+++..+|
T Consensus 241 ~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~-~l~L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 241 EGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQ-GLSIDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred CCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999998899999999999 5565555 599999999999999999999999998876
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=2.8e-63 Score=471.75 Aligned_cols=293 Identities=22% Similarity=0.330 Sum_probs=267.4
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEEec
Q 017740 44 VTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVG 123 (366)
Q Consensus 44 IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi~a 123 (366)
||| +|.||+++++.|+..++.+ |++|+|+++ ++++|+++|++|+..+...++.++.+.+++++|||+||+++
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~-----el~L~Di~~--~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIAD-----EIVLIDINK--DKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCC-----EEEEEeCCC--ChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 689 5999999999999888765 999999975 57899999999998766666666667789999999999999
Q ss_pred CCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHHHHHHH
Q 017740 124 GFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAMGQI 202 (366)
Q Consensus 124 G~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R~~~~l 202 (366)
|.|+++|++|.|++..|+++++++++.+++++ |+++++++|||+|++|++++++ +|+|++| ||.||.|||+|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~-sg~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKL-SGFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHH-hCCCHHHEEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999997 9999999999999999999998 7999999 6888999999999999
Q ss_pred HHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcccc----CccchHHHHHHHHhhHHHHHHhcCCCcH
Q 017740 203 SERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRGAAIIKARKLSSA 278 (366)
Q Consensus 203 a~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~----~~~~~~~i~~~v~~~~~~i~~~kg~s~~ 278 (366)
|++++++|++|+++ ||||||++++|+||+++| +|+|+.+++.+ ..+.++++.++++++|++|++.||++++
T Consensus 151 a~~l~v~~~~V~~~-v~GeHG~s~vp~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~ 225 (299)
T TIGR01771 151 AEKLGVDPQSVHAY-IIGEHGDSEVPVWSSATI----GGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYY 225 (299)
T ss_pred HHHhCcCcCeEEEE-EEecCCCceeeceeeeEE----CCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeH
Confidence 99999999999987 699999999999999999 99999998754 1334678999999999999999997774
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 017740 279 LSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAE 356 (366)
Q Consensus 279 ~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~ 356 (366)
++|+++++++++++. |+++++|+|++++|+||+ .++|||+||++| +|++++++ ++|+++|+++|++|++.|++
T Consensus 226 -~~a~a~~~~i~ail~--d~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 226 -GIGMAVARIVEAILH--DENRVLPVSAYLDGEYGI-KDVYIGVPAVLGRNGVEEIIE-LPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred -HHHHHHHHHHHHHHc--CCCcEEEEEEEecccCCC-CCEEEEEEEEEeCCeeEEEcc-CCCCHHHHHHHHHHHHHHhC
Confidence 578899988887766 468999999999999998 689999999999 99999995 99999999999999999874
No 14
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=1.5e-62 Score=474.08 Aligned_cols=302 Identities=23% Similarity=0.358 Sum_probs=269.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc-cceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~-~~v~~t~~l~~al~~aDi 118 (366)
+||+||| +|.||+++++.|+..++.+ |++|+|+++ +++.|.++|+.|+..... .++..+++ +++++|||+
T Consensus 38 ~KI~IIG-aG~VG~~~a~~l~~~~l~~-----el~LiDi~~--~~~~g~a~DL~~~~~~~~~~~i~~~~d-y~~~~daDi 108 (350)
T PLN02602 38 TKVSVVG-VGNVGMAIAQTILTQDLAD-----ELALVDVNP--DKLRGEMLDLQHAAAFLPRTKILASTD-YAVTAGSDL 108 (350)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCC-----EEEEEeCCC--chhhHHHHHHHhhhhcCCCCEEEeCCC-HHHhCCCCE
Confidence 6999999 5999999999999888765 999999975 578999999999864222 34443344 678999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNR 197 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R 197 (366)
||++||.|+++|++|.|++.+|+++++++++.++++| |+++++++|||+|++|++++++ +|||++| ||.||.||++|
T Consensus 109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~-sg~p~~rviG~gt~LDs~R 186 (350)
T PLN02602 109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVLTYVAWKL-SGFPANRVIGSGTNLDSSR 186 (350)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHH-hCCCHHHEEeecchHHHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999998 7899999 57889999999
Q ss_pred HHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccC--cc---chHHHHHHHHhhHHHHHHh
Q 017740 198 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD--NW---LNTEFITTVQQRGAAIIKA 272 (366)
Q Consensus 198 ~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~--~~---~~~~i~~~v~~~~~~i~~~ 272 (366)
+++++|+++++++++|+++ ||||||++++|+||++++ +|+|+.+++.+. .+ ..+++.+++++++++|++.
T Consensus 187 ~r~~lA~~l~v~~~~V~~~-ViGeHGds~vp~wS~~~i----~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~ 261 (350)
T PLN02602 187 FRFLIADHLDVNAQDVQAY-IVGEHGDSSVALWSSVSV----GGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL 261 (350)
T ss_pred HHHHHHHHhCCCccceeee-EEecCCCceEeeeeeeeE----CCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999987 689999999999999999 999999986542 11 1578999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCC-CceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHH
Q 017740 273 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIP-EGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDAT 350 (366)
Q Consensus 273 kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~-~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~s 350 (366)
||.|+ +++|+++++++.+++. |+++++|+|++++|+||++ +++|||+||++| +|++++++ ++||++|+++|++|
T Consensus 262 KG~t~-~gia~a~a~ii~ail~--d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~-l~L~~~E~~~l~~s 337 (350)
T PLN02602 262 KGYTS-WAIGYSVASLVRSLLR--DQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVN-VHLTDEEAERLRKS 337 (350)
T ss_pred CCccH-HHHHHHHHHHHHHHHh--cCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEec-CCCCHHHHHHHHHH
Confidence 99776 5678999988777665 5689999999999999994 799999999999 99999995 99999999999999
Q ss_pred HHHHHHHHHHH
Q 017740 351 AEELAEEKTLA 361 (366)
Q Consensus 351 a~~i~~~i~~~ 361 (366)
++.|++.++..
T Consensus 338 a~~l~~~~~~~ 348 (350)
T PLN02602 338 AKTLWEVQSQL 348 (350)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 15
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=2e-62 Score=469.46 Aligned_cols=305 Identities=24% Similarity=0.349 Sum_probs=274.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCC
Q 017740 36 PKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 115 (366)
Q Consensus 36 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~ 115 (366)
.+.++||+|||| |.||+++++.|+..++.+ +|+|+|+++ ++++|.++|+.|+.. ...++.++.+.+++++|
T Consensus 3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~-----el~L~D~~~--~~~~g~~~Dl~~~~~-~~~~~~i~~~~~~~~~~ 73 (315)
T PRK00066 3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIAD-----ELVIIDINK--EKAEGDAMDLSHAVP-FTSPTKIYAGDYSDCKD 73 (315)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCC-----EEEEEeCCC--chhHHHHHHHHhhcc-ccCCeEEEeCCHHHhCC
Confidence 355789999995 999999999999888765 899999975 578999999999873 22345666666899999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccch
Q 017740 116 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLD 194 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~ld 194 (366)
||+||+++|.|+++|++|.+++..|+++++++++.+++++ |+++++++|||+|++|++++++ +|+|++| ||.||.||
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~~~~~~~k~-sg~p~~~viG~gt~LD 151 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDILTYATWKL-SGFPKERVIGSGTSLD 151 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHHHHHHHHHH-hCCCHHHEeecCchHH
Confidence 9999999999999999999999999999999999999998 9999999999999999999998 7999999 58889999
Q ss_pred HHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccc----hHHHHHHHHhhHHHHH
Q 017740 195 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL----NTEFITTVQQRGAAII 270 (366)
Q Consensus 195 s~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~----~~~i~~~v~~~~~~i~ 270 (366)
|+|+++.+|++++++|++|+++ ||||||++++|+||++++ +|+|+.+++.+..|. ++++.+++++++.+|+
T Consensus 152 s~R~~~~la~~l~v~~~~V~~~-viGeHG~s~v~~~S~~~v----~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii 226 (315)
T PRK00066 152 SARFRYMLSEKLDVDPRSVHAY-IIGEHGDTEFPVWSHANV----AGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEII 226 (315)
T ss_pred HHHHHHHHHHHhCCCcccEEEE-EEecCCCcceecceeceE----CCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 689999999999999999 999999997664442 4579999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHH
Q 017740 271 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDA 349 (366)
Q Consensus 271 ~~kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~ 349 (366)
+.||+++| ++|+++++++.+++. ++++++|+|++++|+||. +++|||+||++| +|+.++++ ++|+++|+++|++
T Consensus 227 ~~kg~t~~-~~a~~~~~i~~ail~--~~~~v~~~sv~~~g~yg~-~~v~~S~Pv~ig~~Gv~~i~~-l~L~~~E~~~L~~ 301 (315)
T PRK00066 227 EKKGATYY-GIAMALARITKAILN--NENAVLPVSAYLEGQYGE-EDVYIGVPAVVNRNGIREIVE-LPLNDDEKQKFAH 301 (315)
T ss_pred hcCCeehH-HHHHHHHHHHHHHHc--CCCeEEEEEEEeccccCC-CCEEEEeEEEEeCCcEEEEcC-CCCCHHHHHHHHH
Confidence 99998775 678888887776555 578999999999999994 899999999999 99999995 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 017740 350 TAEELAEEKTLA 361 (366)
Q Consensus 350 sa~~i~~~i~~~ 361 (366)
|+++|++.++..
T Consensus 302 s~~~l~~~~~~~ 313 (315)
T PRK00066 302 SADVLKEIMDEA 313 (315)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 16
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=5.7e-63 Score=443.76 Aligned_cols=299 Identities=26% Similarity=0.382 Sum_probs=272.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~l~~al~~aD 117 (366)
..||.|+| .|.+|.+++..++.+++.+ |++|+|.++ ++++|++|||+|..... .+++....| +.+.++++
T Consensus 20 ~~KItVVG-~G~VGmAca~siL~k~Lad-----el~lvDv~~--dklkGE~MDLqH~s~f~~~~~V~~~~D-y~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVG-VGQVGMACAISILLKGLAD-----ELVLVDVNE--DKLKGEMMDLQHGSAFLSTPNVVASKD-YSVSANSK 90 (332)
T ss_pred CceEEEEc-cchHHHHHHHHHHHhhhhh-----ceEEEecCc--chhhhhhhhhccccccccCCceEecCc-ccccCCCc
Confidence 47999999 5999999999999888865 999999986 67899999999986433 467887777 57899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHH
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 196 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~ 196 (366)
+||+|||..+++|++|.++.++|+.+++.+..++.+|. |+++++++|||+|+|||+.|++ ||||.+| ||.||+|||+
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~yS-pd~~llvvSNPVDilTYv~wKL-SgfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYS-PDCILLVVSNPVDILTYVTWKL-SGFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCchHHHHHHHHHH-cCCcccceeccCcCccHH
Confidence 99999999999999999999999999999999999996 9999999999999999999998 9999999 8999999999
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcccc-------CccchHHHHHHHHhhHHHH
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD-------DNWLNTEFITTVQQRGAAI 269 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~-------~~~~~~~i~~~v~~~~~~i 269 (366)
|||++++++++++|.++++++ +||||++.||+||.+.| +|.|+.++..+ +.| .++.++|.+.++||
T Consensus 169 RFryLi~~~Lg~~pss~hgwI-iGEHGdSsV~vWSgvni----AGv~l~~l~~~~~t~~d~e~w--~eihK~v~~sayev 241 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHGWI-IGEHGDSSVPVWSGVNI----AGVSLKDLNPDLGTDYDPENW--KEIHKQVVDSAYEV 241 (332)
T ss_pred HHHHHHHHHhCCCcccceEEE-eeccCCccceecccccc----cceEHhHhChhhcCCCCHHHH--HHHHHHHHHHHHHH
Confidence 999999999999999999985 89999999999999999 99999998654 235 58999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 017740 270 IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 348 (366)
Q Consensus 270 ~~~kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~ 348 (366)
++.||+|+| +.+++.+++..+++. +.++++|+|+..+|.|||.+++|||+||++| +|+..+++ .+|+++|+++|+
T Consensus 242 iklKGyTsw-aIglsva~l~~ail~--n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~-~~Lt~~E~akL~ 317 (332)
T KOG1495|consen 242 IKLKGYTSW-AIGLSVADLAQAILR--NLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVK-QKLTDEEVAKLK 317 (332)
T ss_pred HHhcCchHH-HHHHHHHHHHHHHHh--CcCceeeeeeccccccCCCCceEEecceeecCCchhhhhc-ccCCHHHHHHHH
Confidence 999999986 468888876665444 5689999999999999998899999999999 99999995 999999999999
Q ss_pred HHHHHHHHHHH
Q 017740 349 ATAEELAEEKT 359 (366)
Q Consensus 349 ~sa~~i~~~i~ 359 (366)
+|++.|.+..+
T Consensus 318 kSa~tl~~~q~ 328 (332)
T KOG1495|consen 318 KSAKTLLEAQK 328 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 17
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1e-61 Score=463.30 Aligned_cols=300 Identities=25% Similarity=0.322 Sum_probs=269.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~l~~al~~aDi 118 (366)
+||+|+| +|.||+++++.|+.+++.+ +++|+|+++ +++.|.++|+.|+.... ..++..+++ +++++|||+
T Consensus 4 ~Ki~IiG-aG~VG~~~a~~l~~~~~~~-----el~LiD~~~--~~~~g~a~Dl~~~~~~~~~~~v~~~~d-y~~~~~adi 74 (312)
T cd05293 4 NKVTVVG-VGQVGMACAISILAKGLAD-----ELVLVDVVE--DKLKGEAMDLQHGSAFLKNPKIEADKD-YSVTANSKV 74 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHHHHHhhccCCCCEEEECCC-HHHhCCCCE
Confidence 6999999 5999999999999887765 999999976 57899999999987322 235555555 567999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNR 197 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R 197 (366)
||+++|.|+++|++|.+++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +|+|++| ||.||.||++|
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~-sg~p~~~viG~gt~Ld~~R 152 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKL-SGLPKHRVIGSGCNLDSAR 152 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEccChHHHHHHHHHHH-hCCCHHHEEecCchHHHHH
Confidence 9999999999999999999999999999999999998 9999999999999999999998 8999999 67779999999
Q ss_pred HHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcccc-----CccchHHHHHHHHhhHHHHHHh
Q 017740 198 AMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD-----DNWLNTEFITTVQQRGAAIIKA 272 (366)
Q Consensus 198 ~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~-----~~~~~~~i~~~v~~~~~~i~~~ 272 (366)
+++++|+++++++++|+++ ||||||++++|+||++++ +|+|+.+++.. +...++++.+++++++++|++.
T Consensus 153 ~~~~la~~l~v~~~~v~~~-v~GeHG~s~vp~~S~~~i----~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~ 227 (312)
T cd05293 153 FRYLIAERLGVAPSSVHGW-IIGEHGDSSVPVWSGVNV----AGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL 227 (312)
T ss_pred HHHHHHHHhCCChhhEEEE-EeecCCCCccccceeceE----CCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987 589999999999999999 99999998632 1112578999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHH
Q 017740 273 RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATA 351 (366)
Q Consensus 273 kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa 351 (366)
||.|++ ++|+++++++.+++. +++.++|++++++|+||+|.++|||+||++| +|++++++ ++||++|+++|++|+
T Consensus 228 kg~t~~-~~a~a~~~ii~ail~--d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~-l~L~~~E~~~l~~s~ 303 (312)
T cd05293 228 KGYTSW-AIGLSVADLVDAILR--NTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIK-QPLTEEEQEKLQKSA 303 (312)
T ss_pred cCCchH-HHHHHHHHHHHHHHc--CCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEec-CCCCHHHHHHHHHHH
Confidence 997764 678999988887665 4689999999999999998899999999999 99999995 999999999999999
Q ss_pred HHHHHHHH
Q 017740 352 EELAEEKT 359 (366)
Q Consensus 352 ~~i~~~i~ 359 (366)
+.|++.++
T Consensus 304 ~~i~~~~~ 311 (312)
T cd05293 304 DTLWEVQK 311 (312)
T ss_pred HHHHHHhh
Confidence 99998775
No 18
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=6.2e-62 Score=463.62 Aligned_cols=304 Identities=37% Similarity=0.654 Sum_probs=269.7
Q ss_pred HHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHH
Q 017740 57 PMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDV 136 (366)
Q Consensus 57 ~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~ 136 (366)
.+|.+++++| +.+..++|+|+++++++++|+++|+.|+.++.......+++++++++|||+||++||.|+++|++|.++
T Consensus 3 ~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dl 81 (313)
T TIGR01756 3 HWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADL 81 (313)
T ss_pred ceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHH
Confidence 4566788888 778899999998877889999999999885443333446777789999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHH-HHCCCCCCCceeecccchHHHHHHHHHHHhCCCCCCeee
Q 017740 137 MSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK-EFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKN 215 (366)
Q Consensus 137 ~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~-~~~s~~~~~ki~~gt~lds~R~~~~la~~l~v~~~~v~~ 215 (366)
+..|+++++++++.+.+++++++++|++|||+|+||++++ +. +|+|++.||+||.|||+||+++||++++++|++|++
T Consensus 82 l~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~-sg~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~ 160 (313)
T TIGR01756 82 LTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHA-PKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYH 160 (313)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHc-CCCCHHHEEecccHHHHHHHHHHHHHhCcChhheee
Confidence 9999999999999999998556889999999999999994 64 899998889999999999999999999999999988
Q ss_pred eEEEccCCCceEeecCCCcccCCCCCcchhhc--cccCccchHHHHHHHHhhHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 017740 216 VIIWGNHSSTQYPDVNHATVTTSKGEKPVREA--VADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWV 293 (366)
Q Consensus 216 ~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~--~~~~~~~~~~i~~~v~~~~~~i~~~kg~s~~~s~a~a~~~~i~~~i 293 (366)
++||||||++++|+||+++|+. +|.|+..+ +. ++|.++++.+++++++++|++.||+|++.++|.++++++++++
T Consensus 161 ~~V~GeHG~s~vp~~S~~~V~~--~G~~~~~~~~~~-~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail 237 (313)
T TIGR01756 161 VVVWGNHAESMVADLTHAEFTK--NGKHQKVFDELC-RDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWL 237 (313)
T ss_pred eEEEECCCCceeecccccEEec--CCeehhHhhhcC-cHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHh
Confidence 8789999999999999999842 78886544 42 2466789999999999999999998888766679999999988
Q ss_pred hCCCCCcEEEEEEeeC--CccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017740 294 LGTPKGTWVSMGVYSD--GSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCL 365 (366)
Q Consensus 294 ~~~~~~~v~~~sv~~~--g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~~i~~~~~~~ 365 (366)
.+.++++|+|+|++++ |+||+++|+|||+||++| +|+++++++++|+++|+++|++|+++|+++.+.+...|
T Consensus 238 ~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 238 FGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred cCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8767789999999985 399998899999999999 99999996699999999999999999999999987765
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=7.8e-61 Score=458.06 Aligned_cols=300 Identities=23% Similarity=0.384 Sum_probs=270.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| +|.+|+++++.|+..++.. +|+|+|+++ +++++.++|+.|...+...++....+.++++++||+|
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~-----ei~l~D~~~--~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIAD-----ELVLIDINE--EKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--chhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 3899999 5999999999999877643 899999976 5678999999988654444444444556789999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHHH
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRA 198 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R~ 198 (366)
|+++|.|+++|++|.+++.+|+++++++++.+++++ |+++++++|||+|++|++++++ +|+|++| ||.||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~~~~~~~~~-~g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDVITYVVQKL-SGLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHH-hCcCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999998 8999999 788899999999
Q ss_pred HHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccc---hHHHHHHHHhhHHHHHHhcCC
Q 017740 199 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGAAIIKARKL 275 (366)
Q Consensus 199 ~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~---~~~i~~~v~~~~~~i~~~kg~ 275 (366)
++++|++++++|++|+++ |||+||++++|+||++++ +|+|+.+++.+..|. ++++.+++++++++|++.||+
T Consensus 151 ~~~la~~l~v~~~~v~~~-V~G~Hg~s~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~ 225 (306)
T cd05291 151 RRALAEKLNVDPRSVHAY-VLGEHGDSQFVAWSTVTV----GGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGA 225 (306)
T ss_pred HHHHHHHHCCCcccceEE-EEecCCCceeecceeeEE----cCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999999999999986 699999999999999999 999999988755453 678999999999999999997
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 017740 276 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 354 (366)
Q Consensus 276 s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i 354 (366)
++ +++|.++++++++++. |+++++|+|++++|+||. +++|||+||++| +|++++++ ++|+++|+++|++|+++|
T Consensus 226 t~-~~~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~s~~~l 300 (306)
T cd05291 226 TY-YGIATALARIVKAILN--DENAILPVSAYLDGEYGE-KDVYIGVPAIIGRNGVEEVIE-LDLTEEEQEKFEKSADII 300 (306)
T ss_pred cH-HHHHHHHHHHHHHHHc--CCCEEEEEEEEeccccCC-CCEEEEEEEEEeCCCEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 76 5678899888887666 578999999999999995 899999999999 99999995 999999999999999999
Q ss_pred HHHHH
Q 017740 355 AEEKT 359 (366)
Q Consensus 355 ~~~i~ 359 (366)
++.++
T Consensus 301 ~~~~~ 305 (306)
T cd05291 301 KENIK 305 (306)
T ss_pred HHHhh
Confidence 98875
No 20
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2.1e-60 Score=453.50 Aligned_cols=296 Identities=25% Similarity=0.395 Sum_probs=269.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc-cceEEeCCHhhhhCCCcEEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~-~~v~~t~~l~~al~~aDiVI 120 (366)
|+|+| +|.||+++++.|+..++.+ +++|+|+++ +++.+.++|+.|...+.. .++..+++ ++++++||+||
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~-----el~l~D~~~--~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLAS-----ELVLVDVNE--EKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVV 71 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCC-----EEEEEeCCc--cHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEE
Confidence 57999 5999999999999888765 899999975 578999999999876532 23443445 68999999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHHHH
Q 017740 121 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAM 199 (366)
Q Consensus 121 i~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R~~ 199 (366)
+++|.|++++++|.+++.+|+++++++++.++++| |+++++++|||+|++|++++++ +|+|++| ||.||.+||+|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~-sg~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKL-SGLPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHH-hCcCHHHEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999999998 8999999 6777999999999
Q ss_pred HHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCCCcHH
Q 017740 200 GQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSAL 279 (366)
Q Consensus 200 ~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~s~~~ 279 (366)
+++|+++++++++|+++ |+||||++++|+||+++| +|+|+.+++.+++|..+++.+++++++++|++.||+++ +
T Consensus 150 ~~la~~l~v~~~~v~~~-viGeHg~s~v~~~S~~~v----~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~kg~t~-~ 223 (300)
T cd00300 150 SLLAEKLDVDPQSVHAY-VLGEHGDSQVVAWSTATV----GGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATN-Y 223 (300)
T ss_pred HHHHHHhCCCcccEEEE-EEeccCCceeeeeeeeEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHccCcch-H
Confidence 99999999999999987 589999999999999999 99999999877667789999999999999999999776 5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 017740 280 SAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEK 358 (366)
Q Consensus 280 s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~~i 358 (366)
++|+++++++.+++. ++++++|+|++++|+||. +++|||+||++| +|++++++ ++|+++|+++|++|++.|++.+
T Consensus 224 ~~a~a~~~~~~ai~~--~~~~v~~~s~~~~g~yg~-~~~~~s~Pv~ig~~Gi~~i~~-l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 224 GIATAIADIVKSILL--DERRVLPVSAVQEGQYGI-EDVALSVPAVVGREGVVRILE-IPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHHHHHHHHc--CCCeEEEEEEEecCccCC-CCEEEEEEEEEeCCCeEEEec-CCCCHHHHHHHHHHHHHHHHHh
Confidence 789999998887766 468999999999999995 899999999999 99999995 9999999999999999999875
No 21
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-58 Score=444.72 Aligned_cols=305 Identities=25% Similarity=0.365 Sum_probs=270.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc--cceEEeCCHhhhhCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKD 115 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~--~~v~~t~~l~~al~~ 115 (366)
+.+||+|+|| |.+|+++++.++..++ . +++|+|+++ +++++.++|+.|...... .++..+++ +++++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~-----~l~L~Di~~--~~~~g~~lDl~~~~~~~~~~~~i~~~~d-~~~l~~ 73 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-G-----DVVLYDVIK--GVPQGKALDLKHFSTLVGSNINILGTNN-YEDIKD 73 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-C-----eEEEEECCC--ccchhHHHHHhhhccccCCCeEEEeCCC-HHHhCC
Confidence 4579999995 9999999999988765 3 899999986 456789999988754333 34555556 469999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccch
Q 017740 116 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLD 194 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~ld 194 (366)
||+||+++|.|++++++|.|++..|.++++++++.++++| |+++++++|||+|+++++++++ +++|++| +|.+|.+|
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t~~~~~~-s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMVKVFQEK-SGIPSNKICGMAGVLD 151 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHh-hCCCcccEEEecchHH
Confidence 9999999999999999999999999999999999999998 9999999999999999999997 8999999 57777999
Q ss_pred HHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccc---hHHHHHHHHhhHHHHHH
Q 017740 195 HNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWL---NTEFITTVQQRGAAIIK 271 (366)
Q Consensus 195 s~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~---~~~i~~~v~~~~~~i~~ 271 (366)
++|+++++|++++++|++|++++ +||||++++|+||+++| +|+|+.+++.++.|. ++++.+++++++++|++
T Consensus 152 s~R~~~~la~~l~v~~~~v~~~v-iGeHg~~~v~~~s~~~v----~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~ 226 (319)
T PTZ00117 152 SSRFRCNLAEKLGVSPGDVSAVV-IGGHGDLMVPLPRYCTV----NGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVK 226 (319)
T ss_pred HHHHHHHHHHHhCCCcccceEEE-eecCCCcEEeceeeceE----CCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999874 79999999999999999 999999987654443 56799999999999999
Q ss_pred h--cCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 017740 272 A--RKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 348 (366)
Q Consensus 272 ~--kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~ 348 (366)
. || ++++++|+++++++.+++. |+++++|+|++++|+||+ +++|||+||++| +|++++++ ++|+++|+++|+
T Consensus 227 ~~~kg-~t~~~~a~a~~~~~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-l~l~~~E~~~l~ 301 (319)
T PTZ00117 227 LLKKG-SAFFAPAAAIVAMIEAYLK--DEKRVLVCSVYLNGQYNC-KNLFVGVPVVIGGKGIEKVIE-LELNAEEKELFD 301 (319)
T ss_pred hcCCC-ChHHHHHHHHHHHHHHHhc--CCCeEEEEEEEeccccCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHH
Confidence 7 55 4457899999998887766 468999999999999999 599999999999 99999995 999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 017740 349 ATAEELAEEKTLAYSC 364 (366)
Q Consensus 349 ~sa~~i~~~i~~~~~~ 364 (366)
+|++.|++.+++...+
T Consensus 302 ~s~~~l~~~~~~~~~~ 317 (319)
T PTZ00117 302 KSIESIQELTQKAKAL 317 (319)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987654
No 22
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.3e-58 Score=440.96 Aligned_cols=300 Identities=22% Similarity=0.316 Sum_probs=266.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+| +|.+|++++..|+..++.. +++|+|+++ +++.+.++|+.|... ...+....++.++++++||+|
T Consensus 1 mkI~IIG-aG~VG~~~a~~l~~~g~~~-----ev~l~D~~~--~~~~g~a~dl~~~~~-~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVG-AGFVGSTTAYALLLRGLAS-----EIVLVDINK--AKAEGEAMDLAHGTP-FVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCCC-----EEEEEECCc--hhhhhHHHHHHcccc-ccCCeEEeeCCHHHhCCCCEE
Confidence 4899999 5999999999998877544 899999975 567889999988753 222233444456889999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHHH
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRA 198 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R~ 198 (366)
|+++|.|++++++|.+++..|+++++++++.+++++ |++++++++||+|+++++++++ +|+|++| ||.||.|||+|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP~d~~~~~~~~~-sg~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVDVLTYVAYKL-SGLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHeecccchhhHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999998 7999999 788899999999
Q ss_pred HHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccC--c---cchHHHHHHHHhhHHHHHHhc
Q 017740 199 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD--N---WLNTEFITTVQQRGAAIIKAR 273 (366)
Q Consensus 199 ~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~--~---~~~~~i~~~v~~~~~~i~~~k 273 (366)
++++|+++++++++|+++ ||||||++++|+||+++| +|+|+.+++++. . +.++++.+++++++++|++.|
T Consensus 150 ~~~la~~~~v~~~~v~~~-viGeHg~~~~~~~S~~~v----~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k 224 (308)
T cd05292 150 RYLLGEHLGVDPRSVHAY-IIGEHGDSEVAVWSSANI----GGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK 224 (308)
T ss_pred HHHHHHHhCCCccceece-eeccCCCcEEecceeeeE----CCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999987 689999999999999999 999999987542 1 236789999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHH
Q 017740 274 KLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAE 352 (366)
Q Consensus 274 g~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~ 352 (366)
|.++ +++|+++++++++++. |+++++|+|++++|+||+ +++|||+||++| +|++++++ ++||++|+++|++|++
T Consensus 225 g~t~-~~~a~a~~~i~~ail~--~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~-~~L~~~E~~~l~~s~~ 299 (308)
T cd05292 225 GATY-YAIGLALARIVEAILR--DENSVLTVSSLLDGQYGI-KDVALSLPCIVGRSGVERVLP-PPLSEEEEEALRASAE 299 (308)
T ss_pred CccH-HHHHHHHHHHHHHHHc--CCCcEEEEEEEEcccCCC-CCEEEEEEEEEeCCceEEecC-CCCCHHHHHHHHHHHH
Confidence 9775 5678999988877665 578999999999999998 799999999999 99999995 9999999999999999
Q ss_pred HHHHHHHH
Q 017740 353 ELAEEKTL 360 (366)
Q Consensus 353 ~i~~~i~~ 360 (366)
.|++.++.
T Consensus 300 ~i~~~~~~ 307 (308)
T cd05292 300 VLKEAIES 307 (308)
T ss_pred HHHHHHhh
Confidence 99998763
No 23
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.6e-58 Score=440.07 Aligned_cols=297 Identities=24% Similarity=0.327 Sum_probs=256.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEe-C--CHhhhhCCCc
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-T--DVVEACKDVN 117 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t-~--~l~~al~~aD 117 (366)
||+||||+|.||+++++.|+.+++.+ |++|+|+++ +.|+++|+.|... ..++..+ . +++++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~-----elvL~Di~~----a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVS-----ELSLYDIAG----AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEecCCC----CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence 79999977999999999998877654 899999974 4799999999652 2355542 2 4589999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch----HHHHHHHHCCCCCCCceeecccc
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRL 193 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~----~t~~~~~~~s~~~~~ki~~gt~l 193 (366)
+||+++|.|++++++|.+++..|+++++++++.+.+++ |+++++++|||+|+ +|+++++. +|+|++|++|.+.|
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~-sg~p~~rViG~g~L 147 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKK-GVYDPNKLFGVTTL 147 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHh-cCCChHHEEeeecc
Confidence 99999999999999999999999999999999999998 99999999999998 88899987 89999996555669
Q ss_pred hHHHHHHHHHHHhCCCCCCeeeeEEEccCCC-ceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHh
Q 017740 194 DHNRAMGQISERLKVHVSDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 272 (366)
Q Consensus 194 ds~R~~~~la~~l~v~~~~v~~~~ViG~hg~-~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~ 272 (366)
||+||++++|++++++|++|+++ ||||||+ +++|+||++++ . |+ ++++ .++++.+++++++++|++.
T Consensus 148 DsaR~r~~la~~l~v~~~~v~~~-ViGeHg~~s~vp~~S~~~~----~--~~---~~~~--~~~~i~~~v~~~g~~Ii~~ 215 (312)
T TIGR01772 148 DIVRANTFVAELKGKDPMEVNVP-VIGGHSGETIIPLISQCPG----K--VL---FTED--QLEALIHRIQNAGTEVVKA 215 (312)
T ss_pred hHHHHHHHHHHHhCCCHHHeEEE-EEEecCCCccccccccccc----c--CC---CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999987 5999996 99999999886 2 32 2222 2578999999999999997
Q ss_pred c-C-CCcHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCC-CCCHHHHHHH
Q 017740 273 R-K-LSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAKM 347 (366)
Q Consensus 273 k-g-~s~~~s~a~a~~~~i~~~i~~-~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~-~Ls~~E~~~l 347 (366)
| | .++++++|+++++++.+++.+ .|++.++|++ +++|+||. +++|||+||++| +|+.++++ + +|+++|+++|
T Consensus 216 k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l 292 (312)
T TIGR01772 216 KAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECA-YVESDGVT-EATFFATPLLLGKNGVEKRLG-IGKLSSFEEKML 292 (312)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEE-EEccCCCc-CceEEEEEEEEcCCeeEEEEc-cCCCCHHHHHHH
Confidence 4 2 244578999999877765531 2457899965 89999997 899999999999 99999995 9 8999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 017740 348 DATAEELAEEKTLAYSCL 365 (366)
Q Consensus 348 ~~sa~~i~~~i~~~~~~~ 365 (366)
++|++.|++.++++.+|.
T Consensus 293 ~~S~~~i~~~~~~g~~~~ 310 (312)
T TIGR01772 293 NGALPELKKNIKKGEEFV 310 (312)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999985
No 24
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-58 Score=438.67 Aligned_cols=302 Identities=21% Similarity=0.338 Sum_probs=265.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc--cceEEeCCHhhhhCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKD 115 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~--~~v~~t~~l~~al~~ 115 (366)
+.+||+|+| +|.+|+.+++.++..++. +++|+|+++ +++.+.++|+.|...... .++..++| +++++|
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~------~i~LvDi~~--~~~~~~~ld~~~~~~~~~~~~~I~~~~d-~~~l~~ 74 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLG------DVVLFDIVK--NIPQGKALDISHSNVIAGSNSKVIGTNN-YEDIAG 74 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCC------eEEEEeCCC--chhhHHHHHHHhhhhccCCCeEEEECCC-HHHhCC
Confidence 347999999 599999999998877652 799999986 456788999988753332 35665566 479999
Q ss_pred CcEEEEecCCCCCCCC-----ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eee
Q 017740 116 VNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITC 189 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~-----~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~ 189 (366)
||+||+++|.|+++++ +|.+++..|+++++++++.++++| |+++++++|||+|++++++++. +++|++| ||.
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~-sg~p~~rviGl 152 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEH-SGLPKNKVCGM 152 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHh-cCCChhhEEEe
Confidence 9999999999999999 999999999999999999999999 9999999999999999999997 8999999 677
Q ss_pred cccchHHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCcc---chHHHHHHHHhhH
Q 017740 190 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNW---LNTEFITTVQQRG 266 (366)
Q Consensus 190 gt~lds~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~---~~~~i~~~v~~~~ 266 (366)
+|.+|++|+++.+|+++++++++|+++ |+||||+++||+||++++ +|+|+.+++..+.+ .++++.+++++++
T Consensus 153 gt~lds~R~~~~la~~l~v~~~~v~~~-viGeHg~s~v~~~S~~~i----~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g 227 (321)
T PTZ00082 153 AGVLDSSRLRTYIAEKLGVNPRDVHAS-VIGAHGDKMVPLPRYVTV----GGIPLSEFIKKGLITQEEIDEIVERTRNTG 227 (321)
T ss_pred cCcccHHHHHHHHHHHhCCCcccceee-EEecCCCceEecceeeEE----CCEEHHHhhhcccCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999987 479999999999999999 99999998754211 2578999999999
Q ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 017740 267 AAIIKARK-LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 344 (366)
Q Consensus 267 ~~i~~~kg-~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~ 344 (366)
++|++.|| +++++++|.++++++++++. |+++++|+|++++|+||+ +++|+|+|+++| +|++++++ ++||++|+
T Consensus 228 ~~i~~~~gkg~t~~~ia~a~~~i~~ail~--d~~~v~~vs~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~ 303 (321)
T PTZ00082 228 KEIVDLLGTGSAYFAPAAAAIEMAEAYLK--DKKRVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKIIE-LDLTPEEQ 303 (321)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHHHc--CCCcEEEEEEEecccCCC-CCeEEEEEEEEeCCeEEEEeC-CCCCHHHH
Confidence 99999753 24457899999988877665 568999999999999999 799999999999 99999996 99999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017740 345 AKMDATAEELAEEKTL 360 (366)
Q Consensus 345 ~~l~~sa~~i~~~i~~ 360 (366)
++|++|++.|++.++.
T Consensus 304 ~~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 304 KKFDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 25
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=5.6e-59 Score=411.53 Aligned_cols=330 Identities=74% Similarity=1.158 Sum_probs=319.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
+++.+|+|+||+|.||.++++.++++.++|.++++.++|+|+.+....++|..++|+|+++|....+..++|..++++|.
T Consensus 2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccC
Confidence 35789999999999999999999999999999999999999998778899999999999999988999999999999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCceeecccchHH
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN 196 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki~~gt~lds~ 196 (366)
|+.|+..+.||++||+|.|++..|.++++..+.++++|++|+++|+|+.||.|+++.++.++++.+|.++|..+|.||.+
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhN 161 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHN 161 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCCC
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 276 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~s 276 (366)
|+..++|.++++..++|.+++|||+|+.+++|+..+++|+...+.+|+.+.+++..|...++.+.||++|..+++.++.|
T Consensus 162 RA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark~S 241 (332)
T KOG1496|consen 162 RALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARKLS 241 (332)
T ss_pred hHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhhhh
Confidence 99999999999999999999999999999999999999977767799999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEeCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 017740 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356 (366)
Q Consensus 277 ~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~ 356 (366)
+++|+|-++++.|++|+.|+++|.+++++|+++|.||+|+|..||+||++.+|-|++++++++++.-++++..+++++++
T Consensus 242 SA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wkiVqgl~iddf~r~km~~t~~EL~e 321 (332)
T KOG1496|consen 242 SAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWKIVQGLPIDDFSREKMDLTAKELKE 321 (332)
T ss_pred hhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceEEEcCcchhHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhC
Q 017740 357 EKTLAYSCLN 366 (366)
Q Consensus 357 ~i~~~~~~~~ 366 (366)
+.+.+..+|+
T Consensus 322 Ekd~a~~~l~ 331 (332)
T KOG1496|consen 322 EKDLAYSCLS 331 (332)
T ss_pred hHHHHHHhhc
Confidence 9999998875
No 26
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=4.5e-58 Score=437.73 Aligned_cols=298 Identities=26% Similarity=0.382 Sum_probs=262.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC--ccceEEeCCHhhhhCCCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKDVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~--~~~v~~t~~l~~al~~aD 117 (366)
+||+|+| +|.+|+.++..|+..++. +++|+|+.+ +..++.+.|+.|..... ..++..++++ +++++||
T Consensus 2 ~KV~VIG-aG~vG~~iA~~la~~g~~------~VvlvDi~~--~l~~g~a~d~~~~~~~~~~~~~i~~t~d~-~~~~~aD 71 (305)
T TIGR01763 2 KKISVIG-AGFVGATTAFRLAEKELA------DLVLLDVVE--GIPQGKALDMYEASPVGGFDTKVTGTNNY-ADTANSD 71 (305)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHcCCC------eEEEEeCCC--ChhHHHHHhhhhhhhccCCCcEEEecCCH-HHhCCCC
Confidence 5999999 599999999999886542 699999975 45577888887754322 2456666775 5699999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHH
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 196 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~ 196 (366)
+||+++|.|++++++|.+++..|+++++++++++.+++ |++++|++|||+|++|++++++ +|+|++| ||.+|.|||+
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~-sg~~~~rviG~g~~lds~ 149 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQK-SGFPKERVIGQAGVLDSA 149 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-HCcCHHHEEEeccchHHH
Confidence 99999999999999999999999999999999999997 9999999999999999999998 8999999 6777899999
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcC-C
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK-L 275 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg-~ 275 (366)
|+++.+|++++++|++|+++ ||||||++++|+||+++| +|+|+.+++.++ .++++.+++++++++|++.|| .
T Consensus 150 R~~~~la~~l~v~~~~v~~~-v~GeHg~s~~~~wS~~~i----~g~~~~~~~~~~--~~~~l~~~v~~~g~~ii~~~~kg 222 (305)
T TIGR01763 150 RFRTFIAMELGVSVQDVTAC-VLGGHGDAMVPLVRYSTV----AGIPVADLISAE--RIAEIVERTRKGGGEIVNLLKQG 222 (305)
T ss_pred HHHHHHHHHhCcCHHHeeee-EEecCCCcEEeeeeeeEE----CCEEHHHhcCHH--HHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 589999999999999999 999999987654 258899999999999999743 2
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 017740 276 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 354 (366)
Q Consensus 276 s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i 354 (366)
++++++|+++++++.+ +++ |+++++|+|++++|+||+ +++|+|+|+++| +|+.++++ ++|+++|+++|++|++.|
T Consensus 223 ~t~~~~a~~~~~i~~a-i~~-~~~~v~~~s~~~~~~yg~-~~v~~s~P~~ig~~Gv~~i~~-~~l~~~E~~~l~~s~~~i 298 (305)
T TIGR01763 223 SAYYAPAASVVEMVEA-ILK-DRKRVLPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIYE-LKLDQSELALLNKSAKIV 298 (305)
T ss_pred ChHHHHHHHHHHHHHH-HhC-CCCeEEEEEEEecccCCC-CceEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 3446788999876654 554 578999999999999998 799999999999 99999996 999999999999999999
Q ss_pred HHHHHH
Q 017740 355 AEEKTL 360 (366)
Q Consensus 355 ~~~i~~ 360 (366)
++.+++
T Consensus 299 ~~~~~~ 304 (305)
T TIGR01763 299 DENCKM 304 (305)
T ss_pred HHHHhc
Confidence 998764
No 27
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.1e-58 Score=437.30 Aligned_cols=296 Identities=24% Similarity=0.344 Sum_probs=255.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEe---CCHhhhhCCC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT---TDVVEACKDV 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t---~~l~~al~~a 116 (366)
+||+||||+|+||+++++.|+.+++.+ |++|+|++ +++|+++||.|+.. ..++... ++++++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~-----elvLiDi~----~a~g~alDL~~~~~--~~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIV----NTPGVAADLSHINT--PAKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCc-----EEEEEecC----ccceeehHhHhCCC--cceEEEecCCCchHHhcCCC
Confidence 499999977999999999998887754 99999996 46899999999862 2345542 3458999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchH----HHHHHHHCCCCCCCceeeccc
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN----ALILKEFAPSIPAKNITCLTR 192 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~----t~~~~~~~s~~~~~ki~~gt~ 192 (366)
|+||++||.|+++|++|.|++..|+++++++++.+.+++ |+++++++|||+|+| |+++++. +++|++|++|.|.
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~-s~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKA-GVYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence 999999999999999999999999999999999999998 999999999999998 8888886 8999999666677
Q ss_pred chHHHHHHHHHHHhCCCCCCeeeeEEEccC-CCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHH
Q 017740 193 LDHNRAMGQISERLKVHVSDVKNVIIWGNH-SSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 271 (366)
Q Consensus 193 lds~R~~~~la~~l~v~~~~v~~~~ViG~h-g~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~ 271 (366)
|||+|+++++|++++++|++|+++ ||||| |+++||+||++.+ . .++ .++ .++++.++++++|++|++
T Consensus 148 LDs~R~~~~la~~l~v~~~~V~~~-v~GeHsGds~vp~~S~~~~----~----~~~-~~~--~~~~i~~~v~~~g~~Ii~ 215 (310)
T cd01337 148 LDVVRANTFVAELLGLDPAKVNVP-VIGGHSGVTILPLLSQCQP----P----FTF-DQE--EIEALTHRIQFGGDEVVK 215 (310)
T ss_pred hHHHHHHHHHHHHhCcCHHHEEEE-EEecCCCCceecccccccc----c----ccC-CHH--HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999976 69999 8999999999976 2 222 222 267899999999999999
Q ss_pred hc---CCCcHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCC-CCCHHHHH
Q 017740 272 AR---KLSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRA 345 (366)
Q Consensus 272 ~k---g~s~~~s~a~a~~~~i~~~i~~-~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~-~Ls~~E~~ 345 (366)
.| | ++++++|.++++++++++.+ .+++.+++++ +.+|+ |. +++|||+||++| +|+.++++ + +|+++|++
T Consensus 216 ~k~gkg-~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~-l~~L~~~E~~ 290 (310)
T cd01337 216 AKAGAG-SATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VT-EAPFFATPVELGKNGVEKNLG-LGKLNDYEKK 290 (310)
T ss_pred CccCCC-CcchhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CC-CceEEEEEEEEeCCeEEEEeC-CCCCCHHHHH
Confidence 85 4 45578999999988887753 2345687787 67666 65 799999999999 99999995 9 69999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 017740 346 KMDATAEELAEEKTLAYSCL 365 (366)
Q Consensus 346 ~l~~sa~~i~~~i~~~~~~~ 365 (366)
+|++|++.|++.++++.+|.
T Consensus 291 ~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 291 LLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred HHHHHHHHHHHHHhhhcccC
Confidence 99999999999999998873
No 28
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.2e-57 Score=435.77 Aligned_cols=303 Identities=24% Similarity=0.385 Sum_probs=270.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc--cceEEeCCHhhhhCCCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKDVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~--~~v~~t~~l~~al~~aD 117 (366)
|||+|+||+|.+|++++..|+.+++.+ +++|+|+++..+++++.++|+.|...... .++..+++ ++++++||
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~-----~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSD 74 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----EEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCC
Confidence 599999988999999999999887754 89999996544678899999988643322 24555556 67899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHH
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 196 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~ 196 (366)
+||+++|.|++++++|.+++..|+++++++++.+.+++ |++++++++||+|++|++++++ +|+|++| ||.+|.|||+
T Consensus 75 iViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~-~g~~~~~viG~gt~LDs~ 152 (309)
T cd05294 75 IVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKE-SGFDKNRVFGLGTHLDSL 152 (309)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHh-cCCCHHHEeeccchHHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999998 7899999 6777999999
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCCC
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 276 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~s 276 (366)
|++++||++++++|++|+++ |+||||++++|+||+++| +|+|+.++++.+.+..+++.+++++++++|++.||++
T Consensus 153 R~~~~la~~l~v~~~~v~~~-viGeHg~s~~~~~S~~~i----~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~t 227 (309)
T cd05294 153 RFKVAIAKHFNVHISEVHTR-IIGEHGDSMVPLISSTSI----GGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGGS 227 (309)
T ss_pred HHHHHHHHHHCcChHHeEEE-EEecCCCceEeeeeecEE----CCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999987 579999999999999999 9999999876434556889999999999999999987
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCcc-CCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHH
Q 017740 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEEL 354 (366)
Q Consensus 277 ~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~y-gi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i 354 (366)
+ +++|.++++++.+++. +++.++|++++.+|+| |++ ++|+|+|+++| +|++++++ ++|+++|+++|++|++.|
T Consensus 228 ~-~~~a~~~~~ii~ail~--~~~~v~~vsv~~~g~~~~~~-~~~~svP~~ig~~Gv~~i~~-l~l~~~E~~~l~~s~~~i 302 (309)
T cd05294 228 E-YGPASAISNLVRTIAN--DERRILTVSTYLEGEIDGIR-DVCIGVPVKLGKNGIEEIVP-IEMDDDEREAFRKSAEIV 302 (309)
T ss_pred h-hhHHHHHHHHHHHHHC--CCCeEEEEEEEECCccCCCC-CeEEEeEEEEcCCccEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 6 5788999988877555 5689999999999998 995 99999999999 99999996 999999999999999999
Q ss_pred HHHHHH
Q 017740 355 AEEKTL 360 (366)
Q Consensus 355 ~~~i~~ 360 (366)
++.++.
T Consensus 303 ~~~~~~ 308 (309)
T cd05294 303 KKYTRE 308 (309)
T ss_pred HHHHhc
Confidence 988763
No 29
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-56 Score=427.31 Aligned_cols=301 Identities=22% Similarity=0.292 Sum_probs=259.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeC---CHhhhh
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT---DVVEAC 113 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~---~l~~al 113 (366)
.++.||+||||+|.||+.+++.|+..++.+ +++|+|++ .+.++++|+.|+.. ...+...+ ++++++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~-----elvL~Di~----~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~l 74 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVS-----ELSLYDIV----GAPGVAADLSHIDT--PAKVTGYADGELWEKAL 74 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCC-----EEEEEecC----CCcccccchhhcCc--CceEEEecCCCchHHHh
Confidence 345799999977999999999998766544 89999993 45788999998754 23444332 337999
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHH----HHCCCCCCCceee
Q 017740 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITC 189 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~----~~~s~~~~~ki~~ 189 (366)
+|||+||+++|.|++++++|.+++..|+++++++++++.+++ |+.+++++|||+|+++++++ +. +++||++++|
T Consensus 75 ~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~-sg~p~~~viG 152 (321)
T PTZ00325 75 RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKA-GVYDPRKLFG 152 (321)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhc-cCCChhheee
Confidence 999999999999999999999999999999999999999997 99999999999999999995 64 8999999544
Q ss_pred cccchHHHHHHHHHHHhCCCCCCeeeeEEEccCCC-ceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHH
Q 017740 190 LTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAA 268 (366)
Q Consensus 190 gt~lds~R~~~~la~~l~v~~~~v~~~~ViG~hg~-~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~ 268 (366)
.+.|||+||++++|++++++|++|+++ ||||||+ ++||+||++ |.|+. ++ .++++.+++++++++
T Consensus 153 ~g~LDs~R~r~~la~~l~v~~~~V~~~-VlGeHGd~s~v~~~S~~-------g~~l~----~~--~~~~i~~~v~~~g~~ 218 (321)
T PTZ00325 153 VTTLDVVRARKFVAEALGMNPYDVNVP-VVGGHSGVTIVPLLSQT-------GLSLP----EE--QVEQITHRVQVGGDE 218 (321)
T ss_pred chhHHHHHHHHHHHHHhCcChhheEEE-EEeecCCcccccchhcc-------CCCCC----HH--HHHHHHHHHHHHHHH
Confidence 456999999999999999999999987 5899999 899999997 34653 22 257899999999999
Q ss_pred HHHhcC--CCcHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 017740 269 IIKARK--LSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 344 (366)
Q Consensus 269 i~~~kg--~s~~~s~a~a~~~~i~~~i~~-~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~ 344 (366)
|++.|| .++++++|+++++++++++.+ ++++.++|++ +++|+||+ +++|+|+||++| +|+.++++.++|+++|+
T Consensus 219 Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 296 (321)
T PTZ00325 219 VVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYEE 296 (321)
T ss_pred HHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHH
Confidence 999873 355678999999888877754 3467899995 99999997 899999999999 99999994389999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhC
Q 017740 345 AKMDATAEELAEEKTLAYSCLN 366 (366)
Q Consensus 345 ~~l~~sa~~i~~~i~~~~~~~~ 366 (366)
++|++|++.|++.++++.+|.+
T Consensus 297 ~~l~~S~~~i~~~~~~~~~~~~ 318 (321)
T PTZ00325 297 ELLEAAVPDLKKNIEKGLEFAR 318 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998863
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=9.9e-55 Score=416.48 Aligned_cols=298 Identities=25% Similarity=0.389 Sum_probs=263.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc--cceEEeCCHhhhhCCCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKDVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~--~~v~~t~~l~~al~~aD 117 (366)
+||+|+|| |.+|++++..++..++. +++|+|+++ +++++.++|+.|...... .+++.+++. +++++||
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~------ev~L~D~~~--~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aD 72 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELG------DVVLFDIVE--GVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSD 72 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCe------EEEEEECCC--chhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCC
Confidence 69999995 99999999999876541 799999975 567888999887654333 345545564 7899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHH
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHN 196 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~ 196 (366)
+||+++|.|++++++|.+++.+|+++++++++.+++++ |++++|++|||+|++|++++++ +|+|++| ||.||.+||+
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~-s~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKE-SGFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCcccEEEeCCCcHHH
Confidence 99999999999999999999999999999999999998 8999999999999999999998 7999999 6777899999
Q ss_pred HHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHh--cC
Q 017740 197 RAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA--RK 274 (366)
Q Consensus 197 R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~--kg 274 (366)
|++++||++++++|++|++++ +||||++++|+||++++ +|.|+.+++.+ +| .+++.+.+++.+.+|++. ||
T Consensus 151 r~~~~la~~l~v~~~~v~~~v-iGehg~s~~p~~S~~~v----~g~~~~~~~~~-~~-~~~l~~~v~~~~~~ii~~~~kg 223 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTAFV-LGGHGDSMVPLVRYSTV----GGIPLEDLLSK-EK-LDEIVERTRKGGAEIVGLLKTG 223 (307)
T ss_pred HHHHHHHHHhCcChhhCcccE-EcCCCCcceEchhhCEE----CCEEHHHhCCh-HH-HHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999875 79999999999999999 99999998644 33 588999999999999997 55
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHH
Q 017740 275 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEE 353 (366)
Q Consensus 275 ~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~ 353 (366)
++ ++++|.++++++.+++. +++.++|+|++++|+||+ ++++||+||++| +|++++++ ++||++|+++|++|++.
T Consensus 224 ~t-~~~~A~~~~~ii~ail~--~~~~~~~~~v~~~g~yg~-~~~~~s~P~~i~~~Gv~~i~~-~~l~~~e~~~l~~s~~~ 298 (307)
T PRK06223 224 SA-YYAPAASIAEMVEAILK--DKKRVLPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKIIE-LELDDEEKAAFDKSVEA 298 (307)
T ss_pred Ch-hHHHHHHHHHHHHHHHc--CCCcEEEEEEEecCcCCC-CCeEEEeEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 44 56778888887776555 568999999999999999 899999999999 99999985 99999999999999999
Q ss_pred HHHHHHHH
Q 017740 354 LAEEKTLA 361 (366)
Q Consensus 354 i~~~i~~~ 361 (366)
|++.++..
T Consensus 299 l~~~~~~~ 306 (307)
T PRK06223 299 VKKLIEAL 306 (307)
T ss_pred HHHHHHhc
Confidence 99998753
No 31
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-55 Score=417.54 Aligned_cols=298 Identities=22% Similarity=0.311 Sum_probs=256.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE--eCCHhhhhCCC
Q 017740 40 CRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA--TTDVVEACKDV 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~--t~~l~~al~~a 116 (366)
|||+|+||+|.||+++++.|+. .+... +++|+|+++ ..++.++|+.|.. ....+.+ ..+++++++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~-----el~L~d~~~---~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS-----ELSLYDIAP---VTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc-----EEEEEecCC---CCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 5999999889999999998865 33322 899999874 2467888998741 1223443 35668999999
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHH----HHCCCCCCCceeeccc
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK----EFAPSIPAKNITCLTR 192 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~----~~~s~~~~~ki~~gt~ 192 (366)
|+||+++|.+++++++|.+++..|++++++++++|++++ |+++++++|||+|+||++++ ++ +|+|++|++|.|.
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~-sg~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKA-GVYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHh-cCCCHHHEEeeec
Confidence 999999999999999999999999999999999999997 99999999999999999988 76 8999999666667
Q ss_pred chHHHHHHHHHHHhCCCCCCeeeeEEEccCCC-ceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHH
Q 017740 193 LDHNRAMGQISERLKVHVSDVKNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 271 (366)
Q Consensus 193 lds~R~~~~la~~l~v~~~~v~~~~ViG~hg~-~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~ 271 (366)
|||+|+++++|++++++|++|+++ ||||||+ ++||+||++ +|.|+.+ + .++++.+++++++++|++
T Consensus 149 Lds~R~~~~ia~~l~~~~~~v~~~-v~GeHg~~s~~p~~S~~------~g~~l~~----~--~~~~i~~~v~~~g~~ii~ 215 (312)
T PRK05086 149 LDVIRSETFVAELKGKQPGEVEVP-VIGGHSGVTILPLLSQV------PGVSFTE----Q--EVADLTKRIQNAGTEVVE 215 (312)
T ss_pred HHHHHHHHHHHHHhCCChhheEEE-EEEecCCCceecccccc------CCccCCH----H--HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999976 5999986 999999998 4677732 2 257899999999999999
Q ss_pred hc--CCCcHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCC-CCCHHHHHH
Q 017740 272 AR--KLSSALSAASSACDHIRDWVLG-TPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAK 346 (366)
Q Consensus 272 ~k--g~s~~~s~a~a~~~~i~~~i~~-~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~-~Ls~~E~~~ 346 (366)
.| +.++++++|.++++++++++.+ .++++++|++ +++|+ |. .++|||+||++| +|++++++ + +|+++|+++
T Consensus 216 ~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~ 291 (312)
T PRK05086 216 AKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GK-YARFFAQPVLLGKNGVEERLP-IGTLSAFEQNA 291 (312)
T ss_pred cccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CC-cceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHH
Confidence 88 2355678999999988887765 3567899976 88886 76 789999999999 99999996 8 999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhC
Q 017740 347 MDATAEELAEEKTLAYSCLN 366 (366)
Q Consensus 347 l~~sa~~i~~~i~~~~~~~~ 366 (366)
|++|++.|++.++++.+|.+
T Consensus 292 l~~s~~~i~~~~~~g~~~~~ 311 (312)
T PRK05086 292 LEGMLDTLKKDIALGEEFVN 311 (312)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999863
No 32
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.2e-54 Score=414.48 Aligned_cols=294 Identities=27% Similarity=0.402 Sum_probs=259.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc--cceEEeCCHhhhhCCCcEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~--~~v~~t~~l~~al~~aDiV 119 (366)
|+|+|| |.+|+.++..|+..++. +++|+|+++ +++.+..+|+.|...... .++..++| ++++++||+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~------eV~L~Di~e--~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG------DVVLLDIVE--GLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc------EEEEEeCCC--cHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEE
Confidence 689995 99999999999876542 799999986 466788888887653332 35555566 6789999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHHH
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRA 198 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R~ 198 (366)
|+++|.|++++++|.+.+..|+++++++++.+++++ |+++++++|||+|++|++++++ +++|++| ||.+|.+|++|+
T Consensus 71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t~~~~~~-s~~~~~rviGlgt~lds~r~ 148 (300)
T cd01339 71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMTYVAYKA-SGFPRNRVIGMAGVLDSARF 148 (300)
T ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCHHHEEEecchHHHHHH
Confidence 999999999999999999999999999999999999 8899999999999999999997 7999999 677789999999
Q ss_pred HHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhc--CCC
Q 017740 199 MGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR--KLS 276 (366)
Q Consensus 199 ~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k--g~s 276 (366)
++++|++++++|++|++++ +||||++++|+||++++ +|.|+.++++++. ++++.+++++.+++|++.| |++
T Consensus 149 ~~~la~~l~v~~~~v~~~v-~G~hg~~~~~~~s~~~v----~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~~k~~g~t 221 (300)
T cd01339 149 RYFIAEELGVSVKDVQAMV-LGGHGDTMVPLPRYSTV----GGIPLTELITKEE--IDEIVERTRNGGAEIVNLLKTGSA 221 (300)
T ss_pred HHHHHHHhCCCccceEEEE-EeCCCCcceecceecEE----CCEEHHHhcChHH--HHHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999999999875 79999999999999999 9999999876653 5899999999999999987 544
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 017740 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 355 (366)
Q Consensus 277 ~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~ 355 (366)
++++|+++++++.+++. +++.++|+|++++|+||++ ++|||+||++| +|++++++ ++||++|+++|++|++.|+
T Consensus 222 -~~~~a~~~~~i~~ail~--~~~~i~~~s~~~~g~yg~~-~~~~s~P~~ig~~G~~~~~~-l~l~~~E~~~l~~s~~~l~ 296 (300)
T cd01339 222 -YYAPAAAIAEMVEAILK--DKKRVLPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKIIE-LDLTDEEKEAFDKSVESVK 296 (300)
T ss_pred -hHHHHHHHHHHHHHHHc--CCCcEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence 46788999877766555 5689999999999999995 99999999999 99999995 9999999999999999999
Q ss_pred HHHH
Q 017740 356 EEKT 359 (366)
Q Consensus 356 ~~i~ 359 (366)
+.++
T Consensus 297 ~~~~ 300 (300)
T cd01339 297 ELID 300 (300)
T ss_pred HHhC
Confidence 8753
No 33
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=2.7e-54 Score=412.53 Aligned_cols=294 Identities=26% Similarity=0.369 Sum_probs=250.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc-cceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL-KGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~-~~v~~t~~l~~al~~aD 117 (366)
+.||+||||+|.||+++++.|+.+++.+ +++|+|+++ +.++++|+.|+..... ..+..+++++++++|||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~-----el~L~Di~~----~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aD 88 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVS-----ELHLYDIAN----TPGVAADVSHINTPAQVRGFLGDDQLGDALKGAD 88 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCC-----EEEEEecCC----CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCC
Confidence 4699999977999999999999877765 899999974 5788999999865321 12223456789999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc----hHHHHHHHHCCCCCCCceeecccc
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN----TNALILKEFAPSIPAKNITCLTRL 193 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~----~~t~~~~~~~s~~~~~ki~~gt~l 193 (366)
+||++||.|++++++|++++..|+++++++++.+++++ |+++++++|||+| ++++++++. +++||+|++|.+.|
T Consensus 89 iVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~-s~~p~~~viG~~~L 166 (323)
T PLN00106 89 LVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKA-GVYDPKKLFGVTTL 166 (323)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHc-CCCCcceEEEEecc
Confidence 99999999999999999999999999999999999998 9999999999999 899999986 89999996666679
Q ss_pred hHHHHHHHHHHHhCCCCCCeeeeEEEccCC-CceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHh
Q 017740 194 DHNRAMGQISERLKVHVSDVKNVIIWGNHS-STQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 272 (366)
Q Consensus 194 ds~R~~~~la~~l~v~~~~v~~~~ViG~hg-~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~ 272 (366)
|++|+++++|++++++|.+|+++ |+|||| +++||+||++.+ . .+ +.++ .++++.++++++|++|++.
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~~~-ViGeHg~~s~vp~~S~~~~----~----~~-~~~~--~~~~i~~~v~~~g~~Ii~~ 234 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVDVP-VVGGHAGITILPLLSQATP----K----VS-FTDE--EIEALTKRIQNGGTEVVEA 234 (323)
T ss_pred hHHHHHHHHHHHhCCChhheEEE-EEEeCCCccEeeehhccee----c----cc-CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999987 579997 599999999976 2 12 2222 2578999999999999998
Q ss_pred c-C-CCcHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCC-CCCHHHHHHH
Q 017740 273 R-K-LSSALSAASSACDHIRDWVLGT-PKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGL-KVDEFSRAKM 347 (366)
Q Consensus 273 k-g-~s~~~s~a~a~~~~i~~~i~~~-~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~-~Ls~~E~~~l 347 (366)
| | .++++++|.++++++++++.+. +++.++|+| +.+++| +.++|||+||++| +|++++++ + +|+++|+++|
T Consensus 235 k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~~~v~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~l 310 (323)
T PLN00106 235 KAGAGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--TELPFFASKVRLGRNGVEEVLG-LGPLSEYEQKGL 310 (323)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--CCceEEEEEEEEcCCeeEEEcC-CCCCCHHHHHHH
Confidence 5 2 3555789999999888777642 256899999 667665 3349999999999 99999996 8 9999999999
Q ss_pred HHHHHHHHHHHH
Q 017740 348 DATAEELAEEKT 359 (366)
Q Consensus 348 ~~sa~~i~~~i~ 359 (366)
++|++.|++.++
T Consensus 311 ~~S~~~i~~~~~ 322 (323)
T PLN00106 311 EALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.8e-49 Score=372.06 Aligned_cols=259 Identities=33% Similarity=0.508 Sum_probs=231.7
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCCHhhhhCCCcEEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~l~~al~~aDiVI 120 (366)
|+|+||+|.+|+.++..|+.++.. ...+++|+|+++ +++++.++|+.|...+. ..+++.++|++++++|||+||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~---~~~el~L~D~~~--~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVL---LAIELVLYDIDE--EKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCC---cceEEEEEeCCc--ccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEE
Confidence 689997799999999999887621 113899999976 57889999999887654 357777788899999999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCc-eeecccchHHHHH
Q 017740 121 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKN-ITCLTRLDHNRAM 199 (366)
Q Consensus 121 i~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~k-i~~gt~lds~R~~ 199 (366)
+++|.++++|++|.+++.+|+++++++++.++++| |+++++++|||+|++|++++++ +|+|++| ||.+| +|++|++
T Consensus 76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~-sg~~~~kviG~~~-ld~~r~~ 152 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRY-SGLPKEKVIGLGT-LDPIRFR 152 (263)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHH-hCCCchhEEEeec-chHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999999998 7999999 45556 9999999
Q ss_pred HHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHHHhcCCCcHH
Q 017740 200 GQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSAL 279 (366)
Q Consensus 200 ~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~~~kg~s~~~ 279 (366)
+++|+++++++++|+++ |||+||++++|+||+++
T Consensus 153 ~~la~~l~v~~~~v~~~-v~G~hg~~~~~~~s~~~--------------------------------------------- 186 (263)
T cd00650 153 RILAEKLGVDPDDVKVY-ILGEHGGSQVPDWSTVR--------------------------------------------- 186 (263)
T ss_pred HHHHHHhCCCccceEEE-EEEcCCCceEeccccch---------------------------------------------
Confidence 99999999999999965 69999999999999743
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 017740 280 SAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELAEEK 358 (366)
Q Consensus 280 s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~~~i 358 (366)
+|.++++++++++. +++.++|++++++|+||++++++||+||++| +|++++++ ++|+++|+++|+++++.++..+
T Consensus 187 -~a~~~~~ii~ai~~--~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 187 -IATSIADLIRSLLN--DEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred -HHHHHHHHHHHHHc--CCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHHHHHHHHHHh
Confidence 56777888877666 4689999999999999988999999999999 99999996 9999999999999999999875
No 35
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6.4e-50 Score=361.18 Aligned_cols=302 Identities=26% Similarity=0.337 Sum_probs=255.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCCHhhhhCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKD 115 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~l~~al~~ 115 (366)
+++.||+|.||+|.||+.|+.+|...++.+ ++.|||+.. ..|.+.|++|.+.+. .....+..++++|+++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs-----~LaLYDi~~----~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~ 96 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVS-----ELALYDIAN----TPGVAADLSHINTNSSVVGFTGADGLENALKG 96 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccc-----eeeeeeccc----CCcccccccccCCCCceeccCChhHHHHHhcC
Confidence 456899999999999999999999887765 899999963 479999999987643 2344555688999999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHC---CCCCCCceeeccc
Q 017740 116 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFA---PSIPAKNITCLTR 192 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~---s~~~~~ki~~gt~ 192 (366)
||+|||.||.||+|||+|+|++..|+.++++++.++.++| |++.+.++|||+|.+.+++.+.+ .-|+|+|++|.|+
T Consensus 97 advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTt 175 (345)
T KOG1494|consen 97 ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTT 175 (345)
T ss_pred CCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceeceeh
Confidence 9999999999999999999999999999999999999999 99999999999998777766543 3499999999999
Q ss_pred chHHHHHHHHHHHhCCCC-CCeeeeEEEccCC-CceEeecCCCcccCCCCCcchhhccccCccchHHHHHHHHhhHHHHH
Q 017740 193 LDHNRAMGQISERLKVHV-SDVKNVIIWGNHS-STQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 270 (366)
Q Consensus 193 lds~R~~~~la~~l~v~~-~~v~~~~ViG~hg-~~~vp~~S~~~v~~~~~~~p~~~~~~~~~~~~~~i~~~v~~~~~~i~ 270 (366)
||..|+++++++.++++| .+++ ++|+|+|. .|++|++|+.+..+. + .++ .++.++.++|++|.|++
T Consensus 176 LDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~p~~~--------~-~~~--~~~~Lt~RiQ~gGtEVV 243 (345)
T KOG1494|consen 176 LDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCKPPFR--------F-TDD--EIEALTHRIQNGGTEVV 243 (345)
T ss_pred hhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCCCccc--------C-CHH--HHHHHHHHHHhCCceEE
Confidence 999999999999999999 4477 67899998 699999999886211 1 111 35789999999999999
Q ss_pred HhcCC--CcHHHHHHHHHHHHHHH---HhCCCCCcEEEEEEeeCCccCCCCceEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 017740 271 KARKL--SSALSAASSACDHIRDW---VLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSR 344 (366)
Q Consensus 271 ~~kg~--s~~~s~a~a~~~~i~~~---i~~~~~~~v~~~sv~~~g~ygi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~ 344 (366)
+.|.. |.++|+|||.+++..+. +.| +++.+.+..|+++. +++ .||+.|+++| +|++++..-.+||++|+
T Consensus 244 ~AKaGaGSATLSMAyAga~fa~s~lrgl~G-~~~v~ecafV~s~~-~~~---~fFaspv~Lg~~Gv~~v~~l~~lsd~E~ 318 (345)
T KOG1494|consen 244 KAKAGAGSATLSMAYAGAKFADSLLRGLNG-DEDVVECAFVASPV-TEL---PFFATPVTLGKKGVEEVLGLGKLSDYEE 318 (345)
T ss_pred EeccCCCchhhhHHHHHHHHHHHHHHHhCC-CCCeEEEeEEeccc-cCc---cceeceEEecCCceeeecCCCccCHHHH
Confidence 99963 77799999988765544 445 34566666677764 344 5999999999 99999996338999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 017740 345 AKMDATAEELAEEKTLAYSCL 365 (366)
Q Consensus 345 ~~l~~sa~~i~~~i~~~~~~~ 365 (366)
+.|+.+.+++++.|+++.+|.
T Consensus 319 ~~l~~~~~eLk~sI~KGv~F~ 339 (345)
T KOG1494|consen 319 KALEAAKPELKKSIEKGVTFV 339 (345)
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999998875
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=2.6e-37 Score=272.42 Aligned_cols=168 Identities=31% Similarity=0.432 Sum_probs=152.9
Q ss_pred ccchHHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcccc----CccchHHHHHHHHhhH
Q 017740 191 TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD----DNWLNTEFITTVQQRG 266 (366)
Q Consensus 191 t~lds~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~----~~~~~~~i~~~v~~~~ 266 (366)
|.||++|+++++|+++|++|++++++ ||||||+++||+||++++ +|.|+.++..+ ..|..+++.+++++++
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~-ViGeHg~s~~~~~S~~~v----~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g 75 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAY-VIGEHGDSQVPDWSHAKV----GGVPLLSYAKPSGKLSEEELEELTERVRKAG 75 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEE-EEBSSSTTEEEEGGGEEE----TTEEHHHHHHTTTSSSHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEE-EEecCCcceeeeeecccc----cccccccccccccchhHHhhhccccccEecc
Confidence 78999999999999999999999976 699999999999999999 99999877554 2466789999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccCCCCc-eEEEEeEEEe-CCeEEEecCCCCCHHHH
Q 017740 267 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEG-LIYSFPVTCE-KGEWSIVKGLKVDEFSR 344 (366)
Q Consensus 267 ~~i~~~kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~ygi~~~-~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~ 344 (366)
++|++.||+++++++|+++++++.+++.+ ++.++|+|++++|+||++.+ +|||+||++| +|+++++++++|+++|+
T Consensus 76 ~~ii~~k~g~t~~s~A~a~~~~v~ail~~--~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~ 153 (174)
T PF02866_consen 76 YEIIKAKGGSTSYSIAAAAARIVEAILKD--ERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQ 153 (174)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHTT--HTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHH
T ss_pred ceeeeeccccCcCCHHHHHHHHHHHHhhc--ccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHH
Confidence 99999996677789999999988887774 58899999999999999655 9999999999 99999995599999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 017740 345 AKMDATAEELAEEKTLAYSCL 365 (366)
Q Consensus 345 ~~l~~sa~~i~~~i~~~~~~~ 365 (366)
++|++|++.|++.++.+.++.
T Consensus 154 ~~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 154 EKLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998874
No 37
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.97 E-value=3e-30 Score=219.48 Aligned_cols=141 Identities=30% Similarity=0.516 Sum_probs=129.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+||+|.||+++++.|+.+++.+ ||+|+|+++ ++++|.++|++|...+...++..+.+.+++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~-----ei~L~D~~~--~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLAD-----EIVLIDINE--DKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSS-----EEEEEESSH--HHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCC-----ceEEeccCc--ccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 599999987999999999999988765 899999985 5789999999999877666667666889999999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCceee
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITC 189 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki~~ 189 (366)
|+++|.|++++++|.+++..|+++++++++.+.+++ |+++++++|||+|++|++++++ +++|++|++|
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~-s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKY-SGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHH-HTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHh-hCcCcccCcC
Confidence 999999999999999999999999999999999998 9999999999999999999998 8999999654
No 38
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.92 E-value=1.3e-22 Score=201.31 Aligned_cols=297 Identities=16% Similarity=0.152 Sum_probs=187.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcc-cCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-cCC--ccceEEeCCHhhhhCC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPL--LKGVVATTDVVEACKD 115 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~~~--~~~v~~t~~l~~al~~ 115 (366)
+||+||||+|+-.-.+...|+... -+ +..+|+|+|+++ ++++- +..+-... ... .-+++.|+|..+|++|
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l---~~~ei~L~Did~--~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEEL---PISEVTLYDIDE--ERLDI-ILTIAKRYVEEVGADIKFEKTMDLEDAIID 74 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhC---CCCEEEEEcCCH--HHHHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCC
Confidence 599999972222223333333322 11 124999999986 44442 22221111 111 2368889999999999
Q ss_pred CcEEEEec---CC---------CCCCC---C-----ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHH
Q 017740 116 VNIAVMVG---GF---------PRKEG---M-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 175 (366)
Q Consensus 116 aDiVIi~a---G~---------~~~~g---~-----~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~ 175 (366)
||+||.+. |. |.+.| + --.....+|+++++++++.|+++| |++|+|++|||+|++|+++
T Consensus 75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a~ 153 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEAV 153 (425)
T ss_pred CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHHH
Confidence 99999985 21 21221 1 123345699999999999999999 9999999999999999999
Q ss_pred HHHCCCCCCCceeecccchHHHHHHHHHHHhCCCCCCeeeeEEEc-cCCCceEeecCCCcccCCCCCcchhhccc----c
Q 017740 176 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVREAVA----D 250 (366)
Q Consensus 176 ~~~~s~~~~~ki~~gt~lds~R~~~~la~~l~v~~~~v~~~~ViG-~hg~~~vp~~S~~~v~~~~~~~p~~~~~~----~ 250 (366)
++. +|+.|++|.|.. +.|+++.+|+.+|+++++|++. ++| ||| ++||++++ +|+|+...+. +
T Consensus 154 ~~~---~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~-v~GlnHg----~~~s~~~~----~G~~l~p~l~~~~~~ 220 (425)
T cd05197 154 RRY---VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQ-YAGLNHG----IWLNRVRY----NGGDVTPKLDEWVEE 220 (425)
T ss_pred HHh---CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEE-EEeccCe----EeeEeEEE----CCeecHHHHHHHHhc
Confidence 987 367786565555 9999999999999999999987 589 999 99999999 7777653222 1
Q ss_pred --------C-------cc----------------------c--hHH-HHH---------HHHhh---HHHHHHh--cCCC
Q 017740 251 --------D-------NW----------------------L--NTE-FIT---------TVQQR---GAAIIKA--RKLS 276 (366)
Q Consensus 251 --------~-------~~----------------------~--~~~-i~~---------~v~~~---~~~i~~~--kg~s 276 (366)
+ .| . .++ +.+ .+.+. -++..+. ...+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~ 300 (425)
T cd05197 221 KSKDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPS 300 (425)
T ss_pred cCccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCC
Confidence 0 00 0 000 000 00000 0011100 0000
Q ss_pred c--------HHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCcc-CCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHH
Q 017740 277 S--------ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAK 346 (366)
Q Consensus 277 ~--------~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~y-gi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~ 346 (366)
. ..+ +-.++.+|. ++.+ +++.++.+.|.-+|.- ++|.+.++=+||.++ +|+..+-- -+|.+.-..+
T Consensus 301 ~~~~~~r~~~~~-~e~a~~ii~-ai~~-~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~L 376 (425)
T cd05197 301 VVELIKRGGRKY-SEAAIPLIR-ALLN-DNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGL 376 (425)
T ss_pred hhhhhhcCCccc-HHHHHHHHH-HHHc-CCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHH
Confidence 0 111 223344555 4554 4678888888888864 788999999999999 88766542 3676665555
Q ss_pred HHHHHHHHHHHHHH
Q 017740 347 MDATAEELAEEKTL 360 (366)
Q Consensus 347 l~~sa~~i~~~i~~ 360 (366)
++.-...-+-.++.
T Consensus 377 i~~~~~~e~l~veA 390 (425)
T cd05197 377 LRQRKMRERLALEA 390 (425)
T ss_pred HHHHHHHHHHHHHH
Confidence 55433333333333
No 39
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.90 E-value=3e-21 Score=191.91 Aligned_cols=300 Identities=16% Similarity=0.179 Sum_probs=186.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc---CCccceEEeCCHhhhhCC
Q 017740 40 CRVLVTGATGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEACKD 115 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~---~~~~~v~~t~~l~~al~~ 115 (366)
|||+||||+|+-+..+...|+.. ..+ ...+|+|+|+++ ++++. +..+-.... ...-+++.|+|..+|++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l---~~~ei~L~DId~--~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g 74 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDF---PLRELVLYDIDA--ERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTD 74 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccC---CCCEEEEECCCH--HHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCC
Confidence 59999997332222233333332 112 224999999986 44443 223322111 123478889999999999
Q ss_pred CcEEEEec---CC---------CCCCCC---C-----hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHH
Q 017740 116 VNIAVMVG---GF---------PRKEGM---E-----RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 175 (366)
Q Consensus 116 aDiVIi~a---G~---------~~~~g~---~-----r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~ 175 (366)
||+|+.+. |. |.+.|. + -.....||++++.++++.|+++| |++++|++|||++++|+++
T Consensus 75 ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~vt~~~ 153 (437)
T cd05298 75 ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIVAEAL 153 (437)
T ss_pred CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHH
Confidence 99999985 22 222221 1 13356699999999999999999 9999999999999999999
Q ss_pred HHHCCCCCCCceeecccchHHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCC-Ccchhhccc----c
Q 017740 176 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKG-EKPVREAVA----D 250 (366)
Q Consensus 176 ~~~~s~~~~~ki~~gt~lds~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~-~~p~~~~~~----~ 250 (366)
++. +|..|++|.|+-.. .++..+|+.+|+++++++.-+ .| -+++.++.+.+. . |+.+...+. +
T Consensus 154 ~~~---~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~-~G---lNH~~w~~~~~~----~~G~D~~p~l~e~~~~ 221 (437)
T cd05298 154 RRL---FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDY-FG---LNHFGWFTKIYD----KQGEDLLPKLREHVKE 221 (437)
T ss_pred HHH---CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEE-Ee---ecchhhhhheEE----CCCCchHHHHHHHHhc
Confidence 986 67788888887655 468889999999999998654 34 444555555554 3 322221110 0
Q ss_pred --------------Cccc---------------------------hHHHHHH-----------HHhhHHHH---HH---h
Q 017740 251 --------------DNWL---------------------------NTEFITT-----------VQQRGAAI---IK---A 272 (366)
Q Consensus 251 --------------~~~~---------------------------~~~i~~~-----------v~~~~~~i---~~---~ 272 (366)
..|. .+++.++ ++....+. .+ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~ 301 (437)
T cd05298 222 NGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIE 301 (437)
T ss_pred cCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhh
Confidence 0010 0011000 00000111 00 0
Q ss_pred cC-C--CcHHH--HHHHHHHHHHHHHhCCCCCcEEEEEEeeCCccC-CCCceEEEEeEEEe-CCeEEEecCCCCCHHHHH
Q 017740 273 RK-L--SSALS--AASSACDHIRDWVLGTPKGTWVSMGVYSDGSYG-IPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRA 345 (366)
Q Consensus 273 kg-~--s~~~s--~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~yg-i~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~ 345 (366)
.+ . ....+ .|.++++++.+ |.+ |++.++++++..+|+|+ +|.|+++++||++| +|+..+.- -+|.+....
T Consensus 302 ~~~~~~~~~~~~~ya~~a~~ii~a-I~~-d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~ 378 (437)
T cd05298 302 TGTAEGSTFHVDVHGEYIVDLAAS-IAY-NTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKG 378 (437)
T ss_pred cCChhhhhhhccchHHHHHHHHHH-HHc-CCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHH
Confidence 01 0 01111 23455555554 554 57899999999999995 67899999999999 99888763 478877766
Q ss_pred HHHHHHHHHHHHHHHH
Q 017740 346 KMDATAEELAEEKTLA 361 (366)
Q Consensus 346 ~l~~sa~~i~~~i~~~ 361 (366)
.++.-..--+-.++.+
T Consensus 379 l~~~~~~~e~l~veAa 394 (437)
T cd05298 379 LMEQQVAYEKLLVEAY 394 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555444444344433
No 40
>PRK15076 alpha-galactosidase; Provisional
Probab=99.90 E-value=2.4e-21 Score=192.85 Aligned_cols=293 Identities=14% Similarity=0.119 Sum_probs=191.0
Q ss_pred CEEEEEcCCCchHHHHHH--HHHh-cccCCCCCCeEEEEEeCccchHhhh-hHHHHHhhhhcCC--ccceEEeCCHhhhh
Q 017740 40 CRVLVTGATGQIGYALVP--MIAR-GIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDAAFPL--LKGVVATTDVVEAC 113 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~--~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~-~~~~dl~~~~~~~--~~~v~~t~~l~~al 113 (366)
+||+|+|| |++|.+.+. .++. ..+.+ .+|+|+|+++ ++++ +... +.+..... ..+++.++|+++++
T Consensus 2 ~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~----~evvLvDid~--er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~eal 73 (431)
T PRK15076 2 PKITFIGA-GSTVFTKNLLGDILSVPALRD----AEIALMDIDP--ERLEESEIV-ARKLAESLGASAKITATTDRREAL 73 (431)
T ss_pred cEEEEECC-CHHHhHHHHHHHHhhCccCCC----CEEEEECCCH--HHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHHh
Confidence 59999995 999988766 5542 33322 2899999986 4454 3333 44433222 34677788989999
Q ss_pred CCCcEEEEecCCC-CCCC--------------CChhHH--------HhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch
Q 017740 114 KDVNIAVMVGGFP-RKEG--------------MERKDV--------MSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170 (366)
Q Consensus 114 ~~aDiVIi~aG~~-~~~g--------------~~r~~~--------~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~ 170 (366)
+|||+||++++.+ .+++ ++|.+. ..+|+++++++++.|+++| |++|+|++|||+|+
T Consensus 74 ~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~di 152 (431)
T PRK15076 74 QGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMAM 152 (431)
T ss_pred CCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHHH
Confidence 9999999999876 3333 445566 8899999999999999999 99999999999999
Q ss_pred HHHHHHHHCCCCCCCc-eeec-ccchHHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcc
Q 017740 171 NALILKEFAPSIPAKN-ITCL-TRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAV 248 (366)
Q Consensus 171 ~t~~~~~~~s~~~~~k-i~~g-t~lds~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~ 248 (366)
+|++++ ++|+.| ||.+ +.+|+. +.+|+.+++++++|+..+ .| -+++.++.+.+. +|+.+...+
T Consensus 153 vt~~~~----~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~-~G---lNH~~W~~~~~~----~G~D~~p~l 217 (431)
T PRK15076 153 NTWAMN----RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRC-AG---INHMAWYLELER----KGEDLYPEL 217 (431)
T ss_pred HHHHHh----cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEE-Ee---ecchhhheeeeE----CCcchHHHH
Confidence 999987 456778 5666 778876 789999999999999875 45 455555655555 222211000
Q ss_pred c-------------------------c--------C--ccc----hHHHHHHHH--------------hhHHHHH-HhcC
Q 017740 249 A-------------------------D--------D--NWL----NTEFITTVQ--------------QRGAAII-KARK 274 (366)
Q Consensus 249 ~-------------------------~--------~--~~~----~~~i~~~v~--------------~~~~~i~-~~kg 274 (366)
. + + .|. .++..+... ....+.. +..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (431)
T PRK15076 218 RAAAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELAN 297 (431)
T ss_pred HHHHhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhC
Confidence 0 0 0 111 111111110 0111111 1112
Q ss_pred CCcHHH--HHHHHHHHHHHHHhCCCCCcEEEEEEeeCCcc-CCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHH
Q 017740 275 LSSALS--AASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDAT 350 (366)
Q Consensus 275 ~s~~~s--~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~y-gi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~s 350 (366)
..++.. .+-.+++++. +|.+ |++.++.+.|.-+|.- ++|.|.++=+||.++ +|+.-+.- -+|.+..+.+++.-
T Consensus 298 ~~~~~~~~~~e~a~~ii~-ai~~-~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~ 374 (431)
T PRK15076 298 AERIEIKRSREYASTIIE-AIET-GEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTN 374 (431)
T ss_pred CCccccccchHHHHHHHH-HHhc-CCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHH
Confidence 211100 1233445555 4554 5678888988888865 788999999999999 89877653 47877776665554
Q ss_pred HHHHHHHHH
Q 017740 351 AEELAEEKT 359 (366)
Q Consensus 351 a~~i~~~i~ 359 (366)
..--+-.++
T Consensus 375 ~~~e~l~ve 383 (431)
T PRK15076 375 INVQELTVE 383 (431)
T ss_pred HHHHHHHHH
Confidence 443333333
No 41
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.88 E-value=3.2e-20 Score=183.95 Aligned_cols=295 Identities=17% Similarity=0.160 Sum_probs=181.3
Q ss_pred CEEEEEcCCCch-HHHHHHHHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC--ccceEEeCCHhhhhCC
Q 017740 40 CRVLVTGATGQI-GYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--LKGVVATTDVVEACKD 115 (366)
Q Consensus 40 ~KI~IiGA~G~v-G~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~--~~~v~~t~~l~~al~~ 115 (366)
+||+|+|| |++ ...+...|+.. ..+ ...+|+|+|+++ .+++.............. ...+..|+|..+|++|
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l---~~~ei~L~Did~-~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g 75 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEEL---PVTELVLVDIDE-EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG 75 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccC---CCCEEEEecCCh-HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC
Confidence 59999997 443 22333344431 212 123999999983 345543222222222111 2467889999999999
Q ss_pred CcEEEEecCCCCCCCCChhH--------------------HHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHH
Q 017740 116 VNIAVMVGGFPRKEGMERKD--------------------VMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 175 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~--------------------~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~ 175 (366)
||+||.+++.+..++.++++ ...+|+++++++++.++++| |+++++++|||++++|+++
T Consensus 76 adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~ivt~a~ 154 (419)
T cd05296 76 ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIVTEAV 154 (419)
T ss_pred CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHH
Confidence 99999998765544443333 36789999999999999999 9999999999999999999
Q ss_pred HHHCCCCCCCceeecccchHHHHHHHHHHHhCCCCCCeeeeEEEc-cCCCceEeecCCCcccCCCCCcchhh--------
Q 017740 176 KEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWG-NHSSTQYPDVNHATVTTSKGEKPVRE-------- 246 (366)
Q Consensus 176 ~~~~s~~~~~ki~~gt~lds~R~~~~la~~l~v~~~~v~~~~ViG-~hg~~~vp~~S~~~v~~~~~~~p~~~-------- 246 (366)
++. + ++|++|.|.. +.|+++.+|+.+|+++++|+.. ++| +|-. ++.+.+. .|+.+..
T Consensus 155 ~k~-~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~-v~GlNH~~----w~~~~~~----~G~D~~p~l~~~~~~ 220 (419)
T cd05296 155 LRH-T---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFID-YAGLNHLG----WLRRVLL----DGEDVLPELLEDLAA 220 (419)
T ss_pred HHh-c---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEE-EEecccce----eeeeeeE----CCcccHHHHHHHhhh
Confidence 987 3 5676666666 4899999999999999999976 479 7742 2222222 1111110
Q ss_pred -------------------ccccC--c-c-chHHHHH--------------HHHhhHHHHHH------------hcCCCc
Q 017740 247 -------------------AVADD--N-W-LNTEFIT--------------TVQQRGAAIIK------------ARKLSS 277 (366)
Q Consensus 247 -------------------~~~~~--~-~-~~~~i~~--------------~v~~~~~~i~~------------~kg~s~ 277 (366)
++..+ . | ..++..+ ...+.=++..+ .++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~ 300 (419)
T cd05296 221 LLSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAG 300 (419)
T ss_pred ccccccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcc
Confidence 00000 0 0 0011111 00000001111 111110
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCcc-CCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 017740 278 ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMDATAEELA 355 (366)
Q Consensus 278 ~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~y-gi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~~sa~~i~ 355 (366)
. +-.++.++.+ |.+ +++.++.+.|.-+|.- ++|.+.++=+||.++ +|+..+-- -+|.+.....++.....-+
T Consensus 301 -y--~e~a~~ii~a-i~~-~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~ 374 (419)
T cd05296 301 -Y--SEAALALISA-IYN-DKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYER 374 (419)
T ss_pred -h--HHHHHHHHHH-Hhc-CCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHH
Confidence 1 1233445554 554 5678888888888865 778999999999999 88776542 3688777665554433333
Q ss_pred HHHHH
Q 017740 356 EEKTL 360 (366)
Q Consensus 356 ~~i~~ 360 (366)
-.++.
T Consensus 375 l~veA 379 (419)
T cd05296 375 LTIEA 379 (419)
T ss_pred HHHHH
Confidence 33333
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.84 E-value=2.1e-18 Score=171.90 Aligned_cols=295 Identities=13% Similarity=0.084 Sum_probs=188.0
Q ss_pred CEEEEEcCCCchHHHHHH--HHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC--CccceEEeCCHhhhhC
Q 017740 40 CRVLVTGATGQIGYALVP--MIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACK 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~--~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~--~~~~v~~t~~l~~al~ 114 (366)
+||+|+| +|.+|++++. .++.. ...+ .+|+|+|+++ ++++....++.+.... ...++..++|+.++++
T Consensus 1 ~KIaIIG-aGs~G~a~a~~~~i~~~~~~~g----~eV~L~Did~--e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIG-AGSVVFTKNLVGDLLKTPELSG----STIALMDIDE--ERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEEC-CChHHhHHHHHHHHhcCCCCCC----CEEEEECCCH--HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 4899999 5999998776 44432 2222 2899999986 5666666666554321 2357888899999999
Q ss_pred CCcEEEEecCCCCCCCCCh----------------------hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHH
Q 017740 115 DVNIAVMVGGFPRKEGMER----------------------KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~g~~r----------------------~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t 172 (366)
|||+||++++....++.++ .....+|.+++.++++.+.++| |+++++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHH
Confidence 9999999987544333333 3456688999999999999999 8999999999999999
Q ss_pred HHHHHHCCCCCCCceeecccchHHHHHHHHHHHhCCCCCCeeeeEEEccCCCceEeecCCCcccCCCCCcchhhcccc--
Q 017740 173 LILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVAD-- 250 (366)
Q Consensus 173 ~~~~~~~s~~~~~ki~~gt~lds~R~~~~la~~l~v~~~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~~~~~~-- 250 (366)
+++++. ++ .|++|.|.. +.|+++.+|+.+++++++|+..+ +| -+++.+|.+.+. +|+.+...+.+
T Consensus 153 ~~~~k~-~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~-~G---lNH~~w~~~~~~----~G~d~~p~l~~~~ 219 (423)
T cd05297 153 WALNRY-TP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQV-AG---INHMAWLLKFEY----NGEDLYPLLDEWI 219 (423)
T ss_pred HHHHHh-CC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEE-Ee---eccHhhhhhheE----CCcchHHHHHHHH
Confidence 999997 44 565444433 88999999999999999999875 56 344444544444 22221100000
Q ss_pred -------------------------C-------cc-----ch-HHHH-------------HHHHhhHHHHHHhcC-----
Q 017740 251 -------------------------D-------NW-----LN-TEFI-------------TTVQQRGAAIIKARK----- 274 (366)
Q Consensus 251 -------------------------~-------~~-----~~-~~i~-------------~~v~~~~~~i~~~kg----- 274 (366)
. .| .. +.+. ++..+.-+.-....+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (423)
T cd05297 220 EEGSEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEID 299 (423)
T ss_pred hccCccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhc
Confidence 0 00 00 0000 000000000000000
Q ss_pred ----CCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCcc-CCCCceEEEEeEEEe-CCeEEEecCCCCCHHHHHHHH
Q 017740 275 ----LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDEFSRAKMD 348 (366)
Q Consensus 275 ----~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~y-gi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~~E~~~l~ 348 (366)
.....+ +-.++.+|. +|.+ +++.++.+.|.-+|.- ++|.+.++=+||.++ +|+..+-- -+|.+.....++
T Consensus 300 ~~~~~~~~~~-~e~a~~ii~-ai~~-~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~ 375 (423)
T cd05297 300 KEELDPVKRS-GEYASPIIE-ALVT-GKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIR 375 (423)
T ss_pred chhccccccc-hHHHHHHHH-HHhc-CCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHH
Confidence 000011 122344554 4554 5678888999888864 788999999999999 88776552 467766666555
Q ss_pred HHHHHHHHHHH
Q 017740 349 ATAEELAEEKT 359 (366)
Q Consensus 349 ~sa~~i~~~i~ 359 (366)
.-...-+-.++
T Consensus 376 ~~~~~e~l~ve 386 (423)
T cd05297 376 PRINVQELAVE 386 (423)
T ss_pred HHHHHHHHHHH
Confidence 54443333333
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.75 E-value=3.7e-16 Score=152.75 Aligned_cols=298 Identities=18% Similarity=0.191 Sum_probs=182.6
Q ss_pred CCEEEEEcCCCchHHHHH--HHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc-C--CccceEEeCCHhhhh
Q 017740 39 PCRVLVTGATGQIGYALV--PMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-P--LLKGVVATTDVVEAC 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la--~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~-~--~~~~v~~t~~l~~al 113 (366)
+.||+|||| |+++.+.. -.|.+.+-+ +..++.|+|+++ ++++ ...++.+... . ..-.+..|+|.++|+
T Consensus 3 ~~KI~iIGg-GSt~tp~~v~g~l~~~e~l---~~~el~L~Did~--~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 3 KFKIVIIGG-GSTYTPKLLLGDLARTEEL---PVRELALYDIDE--ERLK-IIAILAKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred cceEEEECC-CccccHHHHHHHHhcCccC---CcceEEEEeCCH--HHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHHh
Confidence 469999996 66655432 122222222 223999999986 4444 2222322111 1 124677889999999
Q ss_pred CCCcEEEEec--C----------CCCCCCC--------ChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHH
Q 017740 114 KDVNIAVMVG--G----------FPRKEGM--------ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 173 (366)
Q Consensus 114 ~~aDiVIi~a--G----------~~~~~g~--------~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~ 173 (366)
+|||+|+.+. | .|.+.|. .-.-.-.|+++++-++++.|+++| |++|++++|||+..+|.
T Consensus 76 ~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~vTe 154 (442)
T COG1486 76 EGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAIVTE 154 (442)
T ss_pred cCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHHHHH
Confidence 9999999986 2 1333221 112334589999999999999999 99999999999999999
Q ss_pred HHHHHCCCCCCCceeecccchHHHHHHHHHHHhCCCC-CCeeeeEEEccCCCceEeecCCCcccCCCCCcchh-------
Q 017740 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHV-SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVR------- 245 (366)
Q Consensus 174 ~~~~~~s~~~~~ki~~gt~lds~R~~~~la~~l~v~~-~~v~~~~ViG~hg~~~vp~~S~~~v~~~~~~~p~~------- 245 (366)
++.++ +|.-|++|.|+-. .-....+|+.+++++ ++++.- +.| -+.+.+|.+++. +|.++.
T Consensus 155 Av~r~---~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~-~aG---lNH~~w~~~~~~----~G~d~~p~l~~~~ 222 (442)
T COG1486 155 AVRRL---YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYR-VAG---LNHMVWILRVRD----DGEDLYPELLEAL 222 (442)
T ss_pred HHHHh---CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEE-Eee---chhhhhhhHhhh----cCccchHHHHHHH
Confidence 99997 4533788877653 356889999999975 999854 345 444455544444 111110
Q ss_pred -------------------------------hccc------------cCc-----c-c-hHHHHHHHHhhHHHH------
Q 017740 246 -------------------------------EAVA------------DDN-----W-L-NTEFITTVQQRGAAI------ 269 (366)
Q Consensus 246 -------------------------------~~~~------------~~~-----~-~-~~~i~~~v~~~~~~i------ 269 (366)
+... .+. | . .++..+ ..+.-++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~-re~~~~~~~~~~~~ 301 (442)
T COG1486 223 EEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMK-REKELFELYKKPEL 301 (442)
T ss_pred hccccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHH-HHHHHHHHHhhhhh
Confidence 0000 000 1 0 001111 00000000
Q ss_pred ------HHhcCCCcHHHHHHHHHHHHHHHHhCCCCCcEEEEEEeeCCcc-CCCCceEEEEeEEEe-CCeEEEecCCCCCH
Q 017740 270 ------IKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSY-GIPEGLIYSFPVTCE-KGEWSIVKGLKVDE 341 (366)
Q Consensus 270 ------~~~kg~s~~~s~a~a~~~~i~~~i~~~~~~~v~~~sv~~~g~y-gi~~~~~~s~Pv~lg-~Gv~~~~~~~~Ls~ 341 (366)
.+.++.+--.+ +-.++.++. +|.+ +++.++.+.|.-+|.- ++|.|..+=+||+++ +|+.-+. ..+|.+
T Consensus 302 ~~~p~~~~~~~~~~~~~-~e~a~~ii~-Ai~~-~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~-~g~lP~ 377 (442)
T COG1486 302 KEKPEELEKRIGAGKYS-SEYASNIIN-AIEN-NKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLA-VGDLPE 377 (442)
T ss_pred hcCchhhhhcCCccccc-HHHHHHHHH-HHhc-CCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccc-cCCCCH
Confidence 01111110012 233345554 4553 5688999999988864 789999999999999 9998866 378998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017740 342 FSRAKMDATAEELAEEKTLA 361 (366)
Q Consensus 342 ~E~~~l~~sa~~i~~~i~~~ 361 (366)
.-...+++....-+-.++.+
T Consensus 378 ~~~~l~~~~i~~e~l~veA~ 397 (442)
T COG1486 378 FVKGLMHTNINVEELTVEAA 397 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887777655544444443
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.63 E-value=2.8e-14 Score=125.47 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=104.5
Q ss_pred EEEEEcCCCchHHHHH--HHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh---cCCccceEEeCCHhhhhCC
Q 017740 41 RVLVTGATGQIGYALV--PMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---FPLLKGVVATTDVVEACKD 115 (366)
Q Consensus 41 KI~IiGA~G~vG~~la--~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~---~~~~~~v~~t~~l~~al~~ 115 (366)
||+|||| |++-.+.. ..+....-+ +..+++|+|+++ ++++.. ..+.... .....++..|+|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l---~~~ei~L~Did~--~RL~~~-~~~~~~~~~~~~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEEL---SGSEIVLMDIDE--ERLEIV-ERLARRMVEEAGADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTS---TEEEEEEE-SCH--HHHHHH-HHHHHHHHHHCTTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccC---CCcEEEEEcCCH--HHHHHH-HHHHHHHHHhcCCCeEEEEeCCHHHHhCC
Confidence 8999996 66655432 223332222 234999999986 555522 2221111 1123478889999999999
Q ss_pred CcEEEEecC------------CCCCCCCC----------hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHH
Q 017740 116 VNIAVMVGG------------FPRKEGME----------RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNAL 173 (366)
Q Consensus 116 aDiVIi~aG------------~~~~~g~~----------r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~ 173 (366)
||+||.+.. .|.+.|.. -.....++++.+.++++.++++| |++|++++|||+..+|.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHH
Confidence 999999862 24443321 13355689999999999999999 99999999999999999
Q ss_pred HHHHHCCCCCCCceeecccchHHHHHHHHHHHhCC
Q 017740 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKV 208 (366)
Q Consensus 174 ~~~~~~s~~~~~ki~~gt~lds~R~~~~la~~l~v 208 (366)
++.+. ++..|+.|.|+-. .-+...+|+.+|+
T Consensus 153 a~~r~---~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRY---TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHH---STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred HHHHh---CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 99987 3446788888765 3567888888874
No 45
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.67 E-value=2.7e-07 Score=82.07 Aligned_cols=119 Identities=24% Similarity=0.342 Sum_probs=77.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC--------------ccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL--------------LKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~--------------~~~v~~ 105 (366)
|||+|+| .|++|..+|..|+..++ ++..+|.++ ++.+ .+.....|. ..++..
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-------~V~g~D~~~--~~v~----~l~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-------QVIGVDIDE--EKVE----ALNNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-------EEEEE-S-H--HHHH----HHHTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-------EEEEEeCCh--HHHH----HHhhccccccccchhhhhccccccccchh
Confidence 6999999 79999999999998776 899999975 3322 233222211 257889
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchHH----HHHHHH
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTNA----LILKEF 178 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~t----~~~~~~ 178 (366)
+++..+++++||+++++.+.|...+. ..+...+.+..+.+.++.+++..+++ +|=|..+.- .++.+.
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhh
Confidence 99999999999999999888775522 23456677788888888766555555 667887765 455554
No 46
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.62 E-value=4.4e-07 Score=86.53 Aligned_cols=110 Identities=16% Similarity=0.072 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEE-EEeCccchHhhhhHHHHHhhhhc---CCccceEEeCCHhhhh
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAF---PLLKGVVATTDVVEAC 113 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~-L~D~~~~~~~l~~~~~dl~~~~~---~~~~~v~~t~~l~~al 113 (366)
..++|+||||+||||++++..|++.|+ +|+ .+...++++. .....+++...- ....++.....+.+|+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY-------~V~gtVR~~~~~k~-~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY-------TVRGTVRDPEDEKK-TEHLRKLEGAKERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC-------EEEEEEcCcchhhh-HHHHHhcccCcccceEEeccccccchHHHHH
Confidence 457999999999999999999999876 454 3333222211 123344432211 1124555556778899
Q ss_pred CCCcEEEEecCCCCCCCC-ChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 114 KDVNIAVMVGGFPRKEGM-ERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~g~-~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
++||.|+++|....-... ...+++.+.++...++.+++.+..
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~ 119 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK 119 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC
Confidence 999999999865332222 355789999999999999999974
No 47
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=1.4e-06 Score=84.49 Aligned_cols=117 Identities=22% Similarity=0.242 Sum_probs=84.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC------------C--ccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP------------L--LKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~------------~--~~~v~~ 105 (366)
|||+|+| +|+||...+..|+..++ +++++|++++ +.+ .+.....| . ..++..
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-------eVv~vDid~~--KV~----~ln~g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-------EVVCVDIDES--KVE----LLNKGISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-------eEEEEeCCHH--HHH----HHhCCCCCCcCccHHHHHHhccccCcEEE
Confidence 5999999 79999999999988665 8999999852 222 23332222 1 134889
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchHHHHHH
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTNALILK 176 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~t~~~~ 176 (366)
|+|..+|++++|+++|+.|.|.++.-+ .+.+.+...++.+.++.+....+++ +|-|+.+...+-.
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 999999999999999999999876221 2366677888888888633244333 7789987655544
No 48
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.57 E-value=3.9e-07 Score=80.67 Aligned_cols=108 Identities=20% Similarity=0.354 Sum_probs=70.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhh----hh----c------CCccceEEe
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID----AA----F------PLLKGVVAT 106 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~----~~----~------~~~~~v~~t 106 (366)
||+|+| +|.+|+.++..++..++ +++|+|.+++ .++.....+.. .. . ....++..+
T Consensus 1 ~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~~--~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIG-AGTMGRGIAALFARAGY-------EVTLYDRSPE--ALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-------EEEEE-SSHH--HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEc-CCHHHHHHHHHHHhCCC-------cEEEEECChH--HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 799999 59999999999998776 8999999763 33322111211 10 0 013578888
Q ss_pred CCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHH
Q 017740 107 TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 175 (366)
Q Consensus 107 ~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~ 175 (366)
+++.++. +||+||-+. ..+.+..+++...++++++|++ |+.||.+.....-+
T Consensus 71 ~dl~~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTSsl~i~~l 122 (180)
T PF02737_consen 71 TDLEEAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTSSLSISEL 122 (180)
T ss_dssp SSGGGGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--SSS-HHHH
T ss_pred cCHHHHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCCCCCHHHH
Confidence 9986655 999999872 2346778899999999997776 67788765543333
No 49
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.54 E-value=1.4e-06 Score=82.82 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=77.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhh----hhcC----------Cc
Q 017740 35 IPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID----AAFP----------LL 100 (366)
Q Consensus 35 m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~----~~~~----------~~ 100 (366)
|+....||+|+| +|.+|..+|..++..++ +++++|.++ +.++.....+.. .... ..
T Consensus 1 ~~~~~~~V~ViG-aG~mG~~iA~~~a~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~ 70 (286)
T PRK07819 1 MSDAIQRVGVVG-AGQMGAGIAEVCARAGV-------DVLVFETTE--ELATAGRNRIEKSLERAVSRGKLTERERDAAL 70 (286)
T ss_pred CCCCccEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHHHHHHHHHHHhcccCChhhHHHHH
Confidence 334446999999 59999999999998776 899999986 333321111111 1000 12
Q ss_pred cceEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcCCcchHHHHHHH
Q 017740 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA-APNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 101 ~~v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tNPv~~~t~~~~~ 177 (366)
.+++.++++ +++++||+|+-+. ..+.+..+++...++++| +|++ |++||-.......+..
T Consensus 71 ~~l~~~~~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~ 131 (286)
T PRK07819 71 ARLRFTTDL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAA 131 (286)
T ss_pred hCeEeeCCH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHh
Confidence 467778887 7799999999882 234555667777899987 6775 6677766654444443
No 50
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.44 E-value=1.1e-06 Score=76.12 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=64.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc------CCccceEEeCCHhhhhC
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVEACK 114 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~------~~~~~v~~t~~l~~al~ 114 (366)
||+|+| +|.+|.++|..|..++. ++.||++++ +.++.. .-.+... ....++..++|+.++++
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g~-------~V~l~~~~~--~~~~~i--~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~ 68 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNGH-------EVTLWGRDE--EQIEEI--NETRQNPKYLPGIKLPENIKATTDLEEALE 68 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCTE-------EEEEETSCH--HHHHHH--HHHTSETTTSTTSBEETTEEEESSHHHHHT
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC-------EEEEEeccH--HHHHHH--HHhCCCCCCCCCcccCcccccccCHHHHhC
Confidence 899999 59999999999998775 899999974 323222 1122221 12358889999999999
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE
Q 017740 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV 163 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv 163 (366)
+||+|+++ .|. ...+++++.+..+.+++..++.
T Consensus 69 ~ad~Iiia--vPs--------------~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIA--VPS--------------QAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE---S-G--------------GGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccEEEec--ccH--------------HHHHHHHHHHhhccCCCCEEEE
Confidence 99999988 222 2256788888887644444443
No 51
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.42 E-value=4.4e-06 Score=80.50 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH----hhhh--c----CCccceEEeCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL----IDAA--F----PLLKGVVATTD 108 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl----~~~~--~----~~~~~v~~t~~ 108 (366)
.+||+|+| +|.+|+.++..++..++ +++++|.++. .+......+ .... . ....+++.+++
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~-------~V~l~D~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGL-------DVVAWDPAPG--AEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 36899999 59999999999998776 8999999752 222111111 1110 0 01246677788
Q ss_pred HhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 109 VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 109 l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
+.+++++||+|+.+. | .|.++.+++...+.++++|++ |+.||-+.....-+++
T Consensus 77 l~~av~~aDlViEav--p------------E~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~ 129 (321)
T PRK07066 77 IEACVADADFIQESA--P------------EREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYA 129 (321)
T ss_pred HHHHhcCCCEEEECC--c------------CCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHH
Confidence 888999999999872 1 235556777788999996665 7788888765544443
No 52
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.39 E-value=7.5e-06 Score=78.15 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=78.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc------CCccceEEeCCHhhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF------PLLKGVVATTDVVEAC 113 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~------~~~~~v~~t~~l~~al 113 (366)
+||+|+| +|.+|++|+..|.+++. +++||.+++ +..+. +.-.|.+. .++.++..++|+.+++
T Consensus 2 ~kI~ViG-aGswGTALA~~la~ng~-------~V~lw~r~~--~~~~~--i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 2 MKIAVIG-AGSWGTALAKVLARNGH-------EVRLWGRDE--EIVAE--INETRENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred ceEEEEc-CChHHHHHHHHHHhcCC-------eeEEEecCH--HHHHH--HHhcCcCccccCCccCCcccccccCHHHHH
Confidence 6999999 59999999999998764 899999974 22221 11122222 2346888999999999
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC-----CcchHHHHHHHH
Q 017740 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-----PANTNALILKEF 178 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN-----Pv~~~t~~~~~~ 178 (366)
++||+|+++ .| ...++++++++..+-.++.+++.++- ....+..++.+.
T Consensus 70 ~~ad~iv~a--vP--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 70 DGADIIVIA--VP--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred hcCCEEEEE--CC--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence 999999998 23 33356677777655456777777663 344677777776
No 53
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.35 E-value=7.4e-06 Score=77.82 Aligned_cols=105 Identities=26% Similarity=0.299 Sum_probs=70.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh---hh-----hcC-------CccceE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI---DA-----AFP-------LLKGVV 104 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~---~~-----~~~-------~~~~v~ 104 (366)
+||+|+| +|.+|+.++..|++.+. +++++|.++ +.++.....+. +. ... ...++.
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGF-------DVTIYDISD--EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT 73 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE
Confidence 5899999 59999999999987665 899999875 23332211111 10 000 124677
Q ss_pred EeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch
Q 017740 105 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170 (366)
Q Consensus 105 ~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~ 170 (366)
.++++.+++++||+||.+. | .+.+..+++.+.+..+++++. ++++|.+..
T Consensus 74 ~~~d~~~a~~~aDlVieav--p------------e~~~~k~~~~~~l~~~~~~~~--ii~sntSt~ 123 (287)
T PRK08293 74 LTTDLAEAVKDADLVIEAV--P------------EDPEIKGDFYEELAKVAPEKT--IFATNSSTL 123 (287)
T ss_pred EeCCHHHHhcCCCEEEEec--c------------CCHHHHHHHHHHHHhhCCCCC--EEEECcccC
Confidence 8888888899999999983 2 224445667777888875565 445666554
No 54
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.34 E-value=1.3e-05 Score=80.71 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE-eCC-HhhhhCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTD-VVEACKD 115 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~-t~~-l~~al~~ 115 (366)
++|||+||||+||||++|+..|+..+. +|+.+|+.... . ... +.+.. . ..++.. ..| +...+.+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-------~V~~ldr~~~~-~-~~~---~~~~~-~-~~~~~~~~~Di~~~~~~~ 184 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-------EVIVIDNFFTG-R-KEN---LVHLF-G-NPRFELIRHDVVEPILLE 184 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCCc-c-HhH---hhhhc-c-CCceEEEECccccccccC
Confidence 458999999999999999999988654 78889874211 0 101 11110 0 011111 122 2345678
Q ss_pred CcEEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 116 VNIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 116 aDiVIi~aG~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
+|+||++|+... ....+..+.+..|+....++.+.+.+.. . ++|.++.
T Consensus 185 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g-~--r~V~~SS 234 (436)
T PLN02166 185 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--RFLLTST 234 (436)
T ss_pred CCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC-C--EEEEECc
Confidence 999999997532 2223456778899999999999998874 3 5555543
No 55
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.34 E-value=1.6e-06 Score=82.12 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=72.9
Q ss_pred EEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc--CCccceEEeCCHhhhhCCCcEEE
Q 017740 43 LVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLLKGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 43 ~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~--~~~~~v~~t~~l~~al~~aDiVI 120 (366)
+||||+||+|++++..|++.+.. .+|+.+|+..... ...++..... ....+++-..++.++++++|+|+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~----~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~ 71 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPK----FLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVF 71 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccc----cchhhhcccceeEEEeccccHHHHHHHhcCCceEE
Confidence 48999999999999999986521 2789999865321 1111211111 11234444567788999999999
Q ss_pred EecCCCCCCC-CChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 121 MVGGFPRKEG-MERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 121 i~aG~~~~~g-~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
++|+.....+ .++..+...|+...+++.+++.+..
T Consensus 72 H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~ 107 (280)
T PF01073_consen 72 HTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG 107 (280)
T ss_pred EeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9987533333 4567789999999999999998864
No 56
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.28 E-value=6.9e-06 Score=78.20 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=93.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHH----HHhhhh-----cC-----CccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKM----ELIDAA-----FP-----LLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~----dl~~~~-----~~-----~~~~v~~ 105 (366)
+||+|+| +|.+|+.+|..++.+++ +++++|+++ +.++.... .+.... .. ...+++.
T Consensus 4 ~kv~ViG-aG~MG~gIA~~~A~~G~-------~V~l~D~~~--~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~ 73 (307)
T COG1250 4 KKVAVIG-AGVMGAGIAAVFALAGY-------DVVLKDISP--EALERALAYIEKNLEKLVEKGKLTEEEADAALARITP 73 (307)
T ss_pred cEEEEEc-ccchhHHHHHHHhhcCC-------ceEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc
Confidence 6999999 59999999999998655 899999984 22221111 111110 00 1245666
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCC-----
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP----- 180 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s----- 180 (366)
++++ +++++||+||-+ ...|.++.+++...+.++++|++ |+.||.+.+.-.-+++...
T Consensus 74 ~~~~-~~l~~~DlVIEA--------------v~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~~~rper~ 136 (307)
T COG1250 74 TTDL-AALKDADLVIEA--------------VVEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEALKRPERF 136 (307)
T ss_pred cCch-hHhccCCEEEEe--------------ccccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHHHhCCchhE
Confidence 6665 589999999987 23467778899999999997777 8899988764434333321
Q ss_pred -C---CCC-------Cce-eecccchHHHHHHHHHHHhCCCC
Q 017740 181 -S---IPA-------KNI-TCLTRLDHNRAMGQISERLKVHV 210 (366)
Q Consensus 181 -~---~~~-------~ki-~~gt~lds~R~~~~la~~l~v~~ 210 (366)
| |+| +-| +--|.-++...-..++++++..|
T Consensus 137 iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 137 IGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 1 111 111 11255567666677788877543
No 57
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.28 E-value=2.3e-06 Score=80.82 Aligned_cols=122 Identities=24% Similarity=0.237 Sum_probs=75.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-hc--------CCccceEEeCCHhhh
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF--------PLLKGVVATTDVVEA 112 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~~--------~~~~~v~~t~~l~~a 112 (366)
|+||||+|+||+.|+..|++.+. .+|+++|.++ ..+.....++... .. +...+++-...+.++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p------~~lil~d~~E--~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP------KKLILFDRDE--NKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-------SEEEEEES-H--HHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC------CeEEEeCCCh--hHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 78999999999999999997543 2899999986 3455555555211 00 112233333344566
Q ss_pred hC--CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc----CCcchHH
Q 017740 113 CK--DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA----NPANTNA 172 (366)
Q Consensus 113 l~--~aDiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t----NPv~~~t 172 (366)
++ +.|+|+++|.....+ ..+..+-+..|+-..+++++...++. -+-.|.++| ||.|+|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~-v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHG-VERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--SEEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccccccCCCCcHHH
Confidence 77 899999998653221 13456668899999999999999986 554555554 6877764
No 58
>PLN02650 dihydroflavonol-4-reductase
Probab=98.25 E-value=9.4e-06 Score=79.02 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-h----cC-CccceEEeCCHh
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A----FP-LLKGVVATTDVV 110 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~----~~-~~~~v~~t~~l~ 110 (366)
..+++|+||||+||||++++..|+..+. +|++++++.. .+... .++... . .. ...++.-...+.
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~-------~V~~~~r~~~--~~~~~-~~~~~~~~~~~~~~~v~~Dl~d~~~~~ 72 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGY-------TVRATVRDPA--NVKKV-KHLLDLPGATTRLTLWKADLAVEGSFD 72 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCC-------EEEEEEcCcc--hhHHH-HHHHhccCCCCceEEEEecCCChhhHH
Confidence 3457999999999999999999998654 7777776531 11211 111110 0 00 011222223455
Q ss_pred hhhCCCcEEEEecCCCCCCCCC-hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 111 EACKDVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 111 ~al~~aDiVIi~aG~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
++++++|.||++|+.......+ ..+.+..|+.....+.+.+.+.. .-.+++.+|
T Consensus 73 ~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~r~v~~S 127 (351)
T PLN02650 73 DAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK-TVRRIVFTS 127 (351)
T ss_pred HHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 7788999999998753221112 23567889999999999988763 222455544
No 59
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.21 E-value=5.3e-05 Score=69.07 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC--CccceEEeCCHhhhhCCCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--LLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~--~~~~v~~t~~l~~al~~aD 117 (366)
|||+|+||+|.+|++++..|.+.+. ++.++++++ +.++....+..+.... ...++.. .+..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-------~V~v~~r~~--~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-------KIIIGSRDL--EKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-------EEEEEEcCH--HHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 4899998679999999999988654 788999864 3444333333221110 0112332 35568899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~ 170 (366)
+||++. |. ..+.++.+.+.... .+..+|-++||.+.
T Consensus 71 vVilav--p~--------------~~~~~~l~~l~~~l-~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 71 VVILAV--PW--------------DHVLKTLESLRDEL-SGKLVISPVVPLAS 106 (219)
T ss_pred EEEEEC--CH--------------HHHHHHHHHHHHhc-cCCEEEEeccCcee
Confidence 999983 11 11233334444433 33456778999753
No 60
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.17 E-value=1.9e-05 Score=75.51 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh--cC----CccceEEeCCHhhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FP----LLKGVVATTDVVEA 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~--~~----~~~~v~~t~~l~~a 112 (366)
.+||+||||+||||++++..|+..+. +++.++++... .. ....+.... .+ ...++.-...+.++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-------~V~~~~r~~~~--~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-------TVKATVRDPND--PK-KTEHLLALDGAKERLHLFKANLLEEGSFDSV 73 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-------EEEEEEcCCCc--hh-hHHHHHhccCCCCceEEEeccccCcchHHHH
Confidence 46899999999999999999998765 67777765321 11 111111100 00 01122223345677
Q ss_pred hCCCcEEEEecCCCCCCCCC-hhHHHhhhHHHHHHHHHHHHhh
Q 017740 113 CKDVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 113 l~~aDiVIi~aG~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
++++|+||++|+........ ..+.+..|+.....+.+.+.+.
T Consensus 74 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 74 VDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred HcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999999754321112 2356788999999999988775
No 61
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.16 E-value=5.6e-05 Score=76.22 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE-eCC-HhhhhCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTD-VVEACKD 115 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~-t~~-l~~al~~ 115 (366)
+.+||+||||+||||++++..|++.+. +|+.+|.... . ....... +... .++.. ..| ...++.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-------~V~~ld~~~~-~-~~~~~~~--~~~~---~~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-------SVIVVDNFFT-G-RKENVMH--HFSN---PNFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-------EEEEEeCCCc-c-chhhhhh--hccC---CceEEEECCccChhhcC
Confidence 348999999999999999999998664 7888885421 0 1111111 1100 11111 122 2345678
Q ss_pred CcEEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 116 VNIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 116 aDiVIi~aG~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
+|+||++|+... ....+..+.+..|+....++.+.+++.. .++|.++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g---~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC---CEEEEECC
Confidence 999999997532 2123456678899999999999998864 35555543
No 62
>PLN02583 cinnamoyl-CoA reductase
Probab=98.16 E-value=2.2e-05 Score=74.83 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh--c-CCccceEEeCCHhhhhCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--F-PLLKGVVATTDVVEACKD 115 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~--~-~~~~~v~~t~~l~~al~~ 115 (366)
.++|+||||+|++|++++..|++.+. ++++.+++...........++.... . ....++.-..++.+++++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-------~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~ 78 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-------TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKG 78 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcC
Confidence 46899999999999999999998765 7877776422111111111221000 0 001122222345678999
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 116 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
+|.|+..++.+........+.+..|+.....+.+.+.+.... .++|++|.
T Consensus 79 ~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~SS 128 (297)
T PLN02583 79 CSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTSS 128 (297)
T ss_pred CCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecc
Confidence 999987765443211123567889999999999998876312 34555443
No 63
>PLN02427 UDP-apiose/xylose synthase
Probab=98.16 E-value=7.8e-06 Score=80.74 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHhh--h--hcCC-ccceEEeCCHh
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELID--A--AFPL-LKGVVATTDVV 110 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~--~--~~~~-~~~v~~t~~l~ 110 (366)
.++|||+||||+||+|++++..|++. +. +|+.+|+.. +... ....... . .... ..++.-..++.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~-------~V~~l~r~~--~~~~-~l~~~~~~~~~~~~~~~~~Dl~d~~~l~ 81 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH-------KVLALDVYN--DKIK-HLLEPDTVPWSGRIQFHRINIKHDSRLE 81 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC-------EEEEEecCc--hhhh-hhhccccccCCCCeEEEEcCCCChHHHH
Confidence 35689999999999999999999875 33 788888653 1111 1000000 0 0000 01222123455
Q ss_pred hhhCCCcEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 111 EACKDVNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 111 ~al~~aDiVIi~aG~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
++++++|+||++|+.... ...+..+.+..|+....++.+.+++.. .+++.+|.
T Consensus 82 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~---~r~v~~SS 136 (386)
T PLN02427 82 GLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN---KRLIHFST 136 (386)
T ss_pred HHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC---CEEEEEee
Confidence 678899999999976332 112233456678877778888877653 24555543
No 64
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.15 E-value=2.3e-05 Score=83.53 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh----hhh----c-C-----CccceE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----DAA----F-P-----LLKGVV 104 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~----~~~----~-~-----~~~~v~ 104 (366)
..||+|+| +|.+|..++..++..++ +++|+|.++ +.++.....+. ... . . ...+++
T Consensus 313 i~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLG-AGIMGGGIAYQSASKGV-------PVIMKDINQ--KALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEEC-CchhHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 36899999 59999999999998776 899999985 33332111111 100 0 0 125788
Q ss_pred EeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 105 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 105 ~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
.++++ +++++||+||-+. ..+.++.+++...++++|+|++ |+.||.+.+....+.+
T Consensus 383 ~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~ 438 (715)
T PRK11730 383 PTLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLAK 438 (715)
T ss_pred EeCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHh
Confidence 88886 7799999999872 2356778899999999997775 7799988764333333
No 65
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.15 E-value=4.2e-05 Score=77.50 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=81.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh--------hhhcC-CccceEEeCCHh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI--------DAAFP-LLKGVVATTDVV 110 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~--------~~~~~-~~~~v~~t~~l~ 110 (366)
|||+|+| +|++|..++..|+..+. + .+++.+|.++ ++++....... +.... ...++..+++..
T Consensus 2 m~I~ViG-~GyvGl~~A~~lA~~g~-g----~~V~gvD~~~--~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~ 73 (473)
T PLN02353 2 VKICCIG-AGYVGGPTMAVIALKCP-D----IEVVVVDISV--PRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVE 73 (473)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCC-C----CeEEEEECCH--HHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHH
Confidence 6999999 69999999999987531 1 1799999875 33332111100 00000 123578888988
Q ss_pred hhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchHHHH
Q 017740 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTNALI 174 (366)
Q Consensus 111 ~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~t~~ 174 (366)
+++++||+++++.+.|...+....+ -..+...+...++.+.++.+++..|++ .|-|..+.-.+
T Consensus 74 ~~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~ 137 (473)
T PLN02353 74 KHVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (473)
T ss_pred HHHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence 8999999999999998753210001 134567788888888888754444343 67788765443
No 66
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.15 E-value=2.8e-05 Score=73.86 Aligned_cols=104 Identities=20% Similarity=0.368 Sum_probs=65.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhh---hh-----c------CCccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID---AA-----F------PLLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~---~~-----~------~~~~~v~~ 105 (366)
.||+|+| +|.+|..++..|++.+. +++++|+++ +.++.....+.. .. . ....++..
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSGF-------QTTLVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 4899999 59999999999988665 799999975 333322111110 00 0 01235677
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 169 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~ 169 (366)
+.++.+++++||+|+.+. |. +....+.+...+.++++++.+ +++|.+.
T Consensus 72 ~~~~~~~~~~aD~Vi~av--pe------------~~~~k~~~~~~l~~~~~~~~i--l~~~tSt 119 (288)
T PRK09260 72 SLDLKAAVADADLVIEAV--PE------------KLELKKAVFETADAHAPAECY--IATNTST 119 (288)
T ss_pred eCcHHHhhcCCCEEEEec--cC------------CHHHHHHHHHHHHhhCCCCcE--EEEcCCC
Confidence 788888999999999883 21 122334445557777756653 3444443
No 67
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.13 E-value=2.2e-05 Score=76.01 Aligned_cols=116 Identities=10% Similarity=0.088 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-cC----CccceEEeCCHhhhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FP----LLKGVVATTDVVEAC 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~~----~~~~v~~t~~l~~al 113 (366)
+++|+||||+||||++++..|+..+. +++.++++.. ... ...++.... .+ ...++.-..++.+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-------~V~~~~r~~~--~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-------AVNTTVRDPE--NQK-KIAHLRALQELGDLKIFGADLTDEESFEAPI 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-------EEEEEECCCC--CHH-HHHHHHhcCCCCceEEEEcCCCChHHHHHHH
Confidence 46899999999999999999998654 6766655431 111 111111100 00 011222222445678
Q ss_pred CCCcEEEEecCCCCCCCCC-hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 114 KDVNIAVMVGGFPRKEGME-RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+++|+||++|+.......+ ..+++..|+.....+.+.+.+.... .+++.+|
T Consensus 79 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~-~~~v~~S 130 (338)
T PLN00198 79 AGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSV-KRVILTS 130 (338)
T ss_pred hcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEee
Confidence 8999999999753221122 2345678999999999998876312 2445444
No 68
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.13 E-value=4.7e-05 Score=72.12 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=71.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhh-H--H----HHHhhhh-cC------CccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG-V--K----MELIDAA-FP------LLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~-~--~----~dl~~~~-~~------~~~~v~~ 105 (366)
.||+|+| +|.+|..++..++..+. +++++|.++ +.++. . . ..+.+.. .. ...++..
T Consensus 4 ~kI~VIG-~G~mG~~ia~~la~~g~-------~V~~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~ 73 (282)
T PRK05808 4 QKIGVIG-AGTMGNGIAQVCAVAGY-------DVVMVDISD--AAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG 73 (282)
T ss_pred cEEEEEc-cCHHHHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 5899999 59999999999988765 799999875 33321 1 0 0110000 00 1135677
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHH
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEF 178 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~ 178 (366)
+++. +++++||+||++. | ++....+++.+.+.++++++. +++||-..+-...+.+.
T Consensus 74 ~~~~-~~~~~aDlVi~av--~------------e~~~~k~~~~~~l~~~~~~~~--il~s~ts~~~~~~la~~ 129 (282)
T PRK05808 74 TTDL-DDLKDADLVIEAA--T------------ENMDLKKKIFAQLDEIAKPEA--ILATNTSSLSITELAAA 129 (282)
T ss_pred eCCH-HHhccCCeeeecc--c------------ccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHh
Confidence 7775 5699999999983 1 234445577777888886665 44677766544454443
No 69
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.12 E-value=2.7e-05 Score=82.87 Aligned_cols=113 Identities=20% Similarity=0.284 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhH---HHHHhh-hhc-----C-----Cccce
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGV---KMELID-AAF-----P-----LLKGV 103 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~---~~dl~~-~~~-----~-----~~~~v 103 (366)
+.+||+|+| +|.+|..++..++..++ +++|+|.++ +.+... ..+..+ ... . ...++
T Consensus 312 ~i~~v~ViG-aG~mG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLG-AGIMGGGIAYQSASKGT-------PIVMKDINQ--HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEEC-CchHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 446899999 59999999999998776 899999975 333211 111111 100 0 12468
Q ss_pred EEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 104 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 104 ~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
+.++++ +++++||+||-+. ..+.++.+++...++.+|+|++ |+.||.+.+...-+..
T Consensus 382 ~~~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia~ 438 (714)
T TIGR02437 382 TPTLSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLAK 438 (714)
T ss_pred EEeCCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHh
Confidence 888876 7799999999872 2346778899999999997776 7899988754434433
No 70
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.12 E-value=2.9e-05 Score=82.66 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-hcccCCCCCCeEEEEEeCccchHhhhhHHHHHh---hhh------c-----CCccce
Q 017740 39 PCRVLVTGATGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEALNGVKMELI---DAA------F-----PLLKGV 103 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~-~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~---~~~------~-----~~~~~v 103 (366)
-+||+|+| +|.+|..++..++ ..++ +|+|+|.++ +.+......+. +.. . ....++
T Consensus 309 i~~v~ViG-aG~mG~giA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLG-GGLMGGGIAYVTATKAGL-------PVRIKDINP--QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEEC-CchhhHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 47899999 5999999999988 6666 899999975 33332111111 100 0 012578
Q ss_pred EEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 104 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 104 ~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
+.++++ +++++||+||-+. ..|.++.+++...++++++|++ |+.||.+.+...-+++
T Consensus 379 ~~~~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~ 435 (708)
T PRK11154 379 SGTTDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAA 435 (708)
T ss_pred EEeCCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHH
Confidence 888886 7899999999772 2457778899999999997776 7789987754444433
No 71
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.11 E-value=1.4e-05 Score=77.88 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=92.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh--hcC------CccceEEeCCHh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--AFP------LLKGVVATTDVV 110 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~--~~~------~~~~v~~t~~l~ 110 (366)
++||+||||+||+|++++..|+..+. +|+.+|+.... ......++... ... ...++.-..++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~ 85 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQ-------TVIGLDNFSTG--YQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQ 85 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-------EEEEEeCCCCc--chhhhhhhhhccccccCCceEEEEccCCCHHHHH
Confidence 47999999999999999999997654 78888874311 01011111000 000 001221112344
Q ss_pred hhhCCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHH----HHHHHHCCCCCC
Q 017740 111 EACKDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA----LILKEFAPSIPA 184 (366)
Q Consensus 111 ~al~~aDiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t----~~~~~~~s~~~~ 184 (366)
+.++++|+||++|+.+..+ ..+..+....|+....++.+.+++.. .. .++.+|... +.. ....+. .-..|
T Consensus 86 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~-~~v~~SS~~-vyg~~~~~~~~e~-~~~~p 161 (348)
T PRK15181 86 KACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH-VS-SFTYAASSS-TYGDHPDLPKIEE-RIGRP 161 (348)
T ss_pred HHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CC-eEEEeechH-hhCCCCCCCCCCC-CCCCC
Confidence 5678999999999764321 13345568899999999999998863 32 445444210 000 000010 00112
Q ss_pred CceeecccchHHHHHHHHHHHhCCCCCCeeeeEEEccC
Q 017740 185 KNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 222 (366)
Q Consensus 185 ~ki~~gt~lds~R~~~~la~~l~v~~~~v~~~~ViG~h 222 (366)
...-+.+-+...++....++..+++..-++-..|.|.+
T Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 162 LSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred CChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 22222222222233333355567888778777778864
No 72
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.10 E-value=3.5e-05 Score=81.93 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHH----hhhhc-----C-----Cccc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMEL----IDAAF-----P-----LLKG 102 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl----~~~~~-----~-----~~~~ 102 (366)
...||+|+| +|.+|+.++..++. .++ +++|+|.++ +.++.....+ ..... + ...+
T Consensus 303 ~i~~v~ViG-aG~mG~~iA~~~a~~~G~-------~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 372 (699)
T TIGR02440 303 KIKKVGILG-GGLMGGGIASVTATKAGI-------PVRIKDINP--QGINNALKYAWKLLDKGVKRRHMTPAERDNQMAL 372 (699)
T ss_pred cccEEEEEC-CcHHHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 346899999 59999999998874 565 899999975 3333211111 11100 0 1257
Q ss_pred eEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 103 v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
++.++++ +++++||+||-+. ..+.++.+++...++++|++++ |+.||.+.+....+.+
T Consensus 373 i~~~~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~ 430 (699)
T TIGR02440 373 ITGTTDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAA 430 (699)
T ss_pred eEEeCCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHH
Confidence 8888886 6899999999872 2346778899999999997775 7789988754444433
No 73
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.07 E-value=2e-05 Score=77.64 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=74.1
Q ss_pred hccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCC
Q 017740 29 MWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTD 108 (366)
Q Consensus 29 ~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~ 108 (366)
++--.+|+..++||+||||+||||++++..|+..+. +|..+|+..+ ..+.... +.. .. ...++.-...
T Consensus 11 ~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-------~V~~v~r~~~-~~~~~~~--~~~-~~-~~~Dl~d~~~ 78 (370)
T PLN02695 11 LEREPYWPSEKLRICITGAGGFIASHIARRLKAEGH-------YIIASDWKKN-EHMSEDM--FCH-EF-HLVDLRVMEN 78 (370)
T ss_pred cCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCC-------EEEEEEeccc-ccccccc--ccc-eE-EECCCCCHHH
Confidence 333345666778999999999999999999988655 7888887431 1111000 000 00 0011211123
Q ss_pred HhhhhCCCcEEEEecCCCCCCC---CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 109 VVEACKDVNIAVMVGGFPRKEG---MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 109 l~~al~~aDiVIi~aG~~~~~g---~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
+.++++++|+||++|+.....+ .+.......|+.....+++.+.+.. .. +++.+|.
T Consensus 79 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~-vk-~~V~~SS 137 (370)
T PLN02695 79 CLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VK-RFFYASS 137 (370)
T ss_pred HHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhC-CC-EEEEeCc
Confidence 3456788999999986532111 1223345678888899999888764 33 4454443
No 74
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.06 E-value=3.1e-05 Score=82.65 Aligned_cols=112 Identities=14% Similarity=0.267 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh---hhh-c-----C-----CccceE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI---DAA-F-----P-----LLKGVV 104 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~---~~~-~-----~-----~~~~v~ 104 (366)
..||+|+| +|.+|+.++..++..++ +++|+|.++ +.+......+. +.. . + ...+++
T Consensus 335 i~~v~ViG-aG~MG~gIA~~~a~~G~-------~V~l~d~~~--~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 404 (737)
T TIGR02441 335 VKTLAVLG-AGLMGAGIAQVSVDKGL-------KTVLKDATP--AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT 404 (737)
T ss_pred ccEEEEEC-CCHhHHHHHHHHHhCCC-------cEEEecCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 46899999 59999999999998776 899999975 33332111111 110 0 0 125788
Q ss_pred EeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 105 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 105 ~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
.++++ +++++||+||-+ ...|.++.+++...++++++|++ |+.||.+.+-..-+..
T Consensus 405 ~~~~~-~~~~~aDlViEA--------------v~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~ 460 (737)
T TIGR02441 405 PTLDY-SGFKNADMVIEA--------------VFEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDIAA 460 (737)
T ss_pred EeCCH-HHhccCCeehhh--------------ccccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHh
Confidence 88886 689999999877 22457778899999999997776 7789988754444433
No 75
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.06 E-value=5.9e-05 Score=71.77 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh----h----hhcC------CccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----D----AAFP------LLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~----~----~~~~------~~~~v~~ 105 (366)
+||+|+| +|.+|..++..|+..+. ++.++|.++ +.+......+. . ...+ ...+++.
T Consensus 5 ~kI~vIG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 74 (292)
T PRK07530 5 KKVGVIG-AGQMGNGIAHVCALAGY-------DVLLNDVSA--DRLEAGLATINGNLARQVAKGKISEEARAAALARIST 74 (292)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe
Confidence 6899999 59999999999998765 899999975 33332111111 0 0000 0135677
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~ 170 (366)
++++ +++++||+||.+. |.+ ....+.+.+.+..+++++.. ++||.+.+
T Consensus 75 ~~~~-~~~~~aD~Vieav--pe~------------~~~k~~~~~~l~~~~~~~~i--i~s~ts~~ 122 (292)
T PRK07530 75 ATDL-EDLADCDLVIEAA--TED------------ETVKRKIFAQLCPVLKPEAI--LATNTSSI 122 (292)
T ss_pred eCCH-HHhcCCCEEEEcC--cCC------------HHHHHHHHHHHHhhCCCCcE--EEEcCCCC
Confidence 7776 6799999999982 221 22233455567777766664 34555544
No 76
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.05 E-value=6.6e-05 Score=71.42 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=66.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHH-------Hhhhh--cC--------Cccc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME-------LIDAA--FP--------LLKG 102 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~d-------l~~~~--~~--------~~~~ 102 (366)
.||+|+| +|.+|..++..|+..+. +++++|.++ +.++..... +.... .. ...+
T Consensus 4 ~~I~ViG-aG~mG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~ 73 (291)
T PRK06035 4 KVIGVVG-SGVMGQGIAQVFARTGY-------DVTIVDVSE--EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMAR 73 (291)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhC
Confidence 5899999 59999999999988765 899999975 333321111 11000 00 0134
Q ss_pred eEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchH
Q 017740 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 171 (366)
Q Consensus 103 v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~ 171 (366)
+..++++ +++++||+||.+. | .+....+++.+.+..+++++.+ ++||.....
T Consensus 74 i~~~~~~-~~~~~aDlVieav--~------------e~~~~k~~~~~~l~~~~~~~~i--l~S~tsg~~ 125 (291)
T PRK06035 74 IRTSTSY-ESLSDADFIVEAV--P------------EKLDLKRKVFAELERNVSPETI--IASNTSGIM 125 (291)
T ss_pred cEeeCCH-HHhCCCCEEEEcC--c------------CcHHHHHHHHHHHHhhCCCCeE--EEEcCCCCC
Confidence 5666666 6899999999983 1 1233455666678888756653 356655443
No 77
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.04 E-value=5e-05 Score=72.92 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=72.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-h----cC-CccceEEeCC
Q 017740 35 IPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-A----FP-LLKGVVATTD 108 (366)
Q Consensus 35 m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~----~~-~~~~v~~t~~ 108 (366)
|....++|+||||+|+||++++..|++.+. ++++.+++.. ..... ..+... . .. ...++.-..+
T Consensus 1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~~G~-------~V~~~~r~~~--~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~ 70 (325)
T PLN02989 1 MADGGKVVCVTGASGYIASWIVKLLLFRGY-------TINATVRDPK--DRKKT-DHLLALDGAKERLKLFKADLLDEGS 70 (325)
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEEcCCc--chhhH-HHHHhccCCCCceEEEeCCCCCchH
Confidence 445567999999999999999999998665 6776665531 11111 111100 0 00 0112222234
Q ss_pred HhhhhCCCcEEEEecCCCCCC-C-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 109 VVEACKDVNIAVMVGGFPRKE-G-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 109 l~~al~~aDiVIi~aG~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
..+++++.|+||++||..... . ......+..|+.....+.+.+.++. ....++++|
T Consensus 71 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~S 128 (325)
T PLN02989 71 FELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTS 128 (325)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEec
Confidence 556788899999999854211 1 1224567788988889999887753 223455544
No 78
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.01 E-value=7.2e-06 Score=73.62 Aligned_cols=113 Identities=22% Similarity=0.348 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhh----hHHHHHhhhhc------CC--------
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN----GVKMELIDAAF------PL-------- 99 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~----~~~~dl~~~~~------~~-------- 99 (366)
+.+.|+|+| +|.+|+.+|+..+..++ .+.|+|.++ +.+. +....+.+.+. +.
T Consensus 10 ~~~~V~ivG-aG~MGSGIAQv~a~sg~-------~V~l~d~~~--~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~ 79 (298)
T KOG2304|consen 10 EIKNVAIVG-AGQMGSGIAQVAATSGL-------NVWLVDANE--DALSRATKAISSSLKRVAKKKKADDPVALEEFVDD 79 (298)
T ss_pred cccceEEEc-ccccchhHHHHHHhcCC-------ceEEecCCH--HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH
Confidence 346799999 59999999998888766 799999975 3333 22222222211 10
Q ss_pred -ccceEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch-HHHHHH
Q 017740 100 -LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT-NALILK 176 (366)
Q Consensus 100 -~~~v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~-~t~~~~ 176 (366)
...+..++|...++++||+||-+ +..|+++.+.+.+.+++.|+++. |.+||.+.+ ++.+..
T Consensus 80 ~l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl~lt~ia~ 142 (298)
T KOG2304|consen 80 TLDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST--ILATNTSSLSLTDIAS 142 (298)
T ss_pred HHHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce--EEeecccceeHHHHHh
Confidence 24566678888999999998754 56789999999999999996554 788998765 444443
No 79
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.99 E-value=0.00012 Score=70.17 Aligned_cols=112 Identities=13% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh---c------CCccceEEeCCH
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---F------PLLKGVVATTDV 109 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~---~------~~~~~v~~t~~l 109 (366)
.+||+|+| +|.+|..++..|+..+. +++++|.++ +.++.....+.... . ....++..+++.
T Consensus 4 ~~~I~vIG-aG~mG~~iA~~l~~~g~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 73 (311)
T PRK06130 4 IQNLAIIG-AGTMGSGIAALFARKGL-------QVVLIDVME--GALERARGVIERALGVYAPLGIASAGMGRIRMEAGL 73 (311)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCH--HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCH
Confidence 36899999 59999999999988665 799999865 33332221111100 0 011345667777
Q ss_pred hhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHH
Q 017740 110 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176 (366)
Q Consensus 110 ~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~ 176 (366)
.+++++||+||++. |. .......+...+..+++++. +++||........+.
T Consensus 74 ~~~~~~aDlVi~av--~~------------~~~~~~~v~~~l~~~~~~~~--ii~s~tsg~~~~~l~ 124 (311)
T PRK06130 74 AAAVSGADLVIEAV--PE------------KLELKRDVFARLDGLCDPDT--IFATNTSGLPITAIA 124 (311)
T ss_pred HHHhccCCEEEEec--cC------------cHHHHHHHHHHHHHhCCCCc--EEEECCCCCCHHHHH
Confidence 77899999999982 21 12223344555666664554 444665554333333
No 80
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=97.99 E-value=8.4e-05 Score=76.18 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh---h-hhcC----------Cccce
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI---D-AAFP----------LLKGV 103 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~---~-~~~~----------~~~~v 103 (366)
+..||+|+| +|.+|+.++..|+..++ +++++|+++ +.++.....+. + .... ...++
T Consensus 6 ~i~~V~VIG-aG~MG~gIA~~la~aG~-------~V~l~D~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 75 (507)
T PRK08268 6 SIATVAVIG-AGAMGAGIAQVAAQAGH-------TVLLYDARA--GAAAAARDGIAARLAKLVEKGKLTAEQADAALARL 75 (507)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 346899999 59999999999998776 899999975 33332111111 1 0000 12357
Q ss_pred EEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch
Q 017740 104 VATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170 (366)
Q Consensus 104 ~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~ 170 (366)
+.++++ +++++||+||.+. + .+..+.+.+...+...+++++ |++||.+.+
T Consensus 76 ~~~~~~-~~~~~aDlViEav--~------------E~~~vK~~vf~~l~~~~~~~a--ilasntStl 125 (507)
T PRK08268 76 RPVEAL-ADLADCDLVVEAI--V------------ERLDVKQALFAQLEAIVSPDC--ILATNTSSL 125 (507)
T ss_pred EEeCCH-HHhCCCCEEEEcC--c------------ccHHHHHHHHHHHHhhCCCCc--EEEECCCCC
Confidence 777776 5688999999872 1 234445556566888886665 555665543
No 81
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.98 E-value=6.7e-05 Score=73.01 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=72.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCC-CCeEEEEEeCcc---chHhhhhHHHHHhhhhc------CCccceEEeCCHh
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPD-QPVILHMLDIEP---AAEALNGVKMELIDAAF------PLLKGVVATTDVV 110 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~-~~~ei~L~D~~~---~~~~l~~~~~dl~~~~~------~~~~~v~~t~~l~ 110 (366)
||+|+| +|.+|++++..|..++...+. -..+|.||.+++ +++.. ..++-.|.+. ..+.++..++|+.
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~--~~in~~~~n~~ylpgi~Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLT--EIINTTHENVKYLPGIKLPANLVAVPDLV 77 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHH--HHHHhcCCCccccCCCcCCCCeEEECCHH
Confidence 699999 699999999999875521110 001899998743 22211 1111122222 1245788899999
Q ss_pred hhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC-------CcchHHHHHHHH
Q 017740 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN-------PANTNALILKEF 178 (366)
Q Consensus 111 ~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN-------Pv~~~t~~~~~~ 178 (366)
+++++||+|+++ .| ...++.+++.+..+-+++..++.++- ..-.+..++.+.
T Consensus 78 eal~~ADiIIlA--VP--------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~ 136 (342)
T TIGR03376 78 EAAKGADILVFV--IP--------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEE 136 (342)
T ss_pred HHHhcCCEEEEE--CC--------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHH
Confidence 999999999988 33 22355666666665544444454442 223566666665
No 82
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.98 E-value=5.8e-05 Score=76.36 Aligned_cols=124 Identities=25% Similarity=0.255 Sum_probs=87.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC------CccceEEeCCHhhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP------LLKGVVATTDVVEA 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~------~~~~v~~t~~l~~a 112 (366)
.+.|.||||+|++|+.++..++..+. .+|+++|.++. .+.....++.+. ++ ....+.-...+..+
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p------~~i~l~~~~E~--~~~~i~~el~~~-~~~~~~~~~igdVrD~~~~~~~ 320 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP------KEIILFSRDEY--KLYLIDMELREK-FPELKLRFYIGDVRDRDRVERA 320 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC------CEEEEecCchH--HHHHHHHHHHhh-CCCcceEEEecccccHHHHHHH
Confidence 47899999999999999999987532 38999999863 344455555432 11 11333333455677
Q ss_pred hCC--CcEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc----CCcchHH
Q 017740 113 CKD--VNIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA----NPANTNA 172 (366)
Q Consensus 113 l~~--aDiVIi~aG~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t----NPv~~~t 172 (366)
+++ .|+|+++|.....|- .+..+-...|+-...++++++.++. =...|.+.| ||.|+|.
T Consensus 321 ~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~-V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 321 MEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhC-CCEEEEEecCcccCCchHhh
Confidence 888 999999986544332 3456668899999999999999876 444555554 7888864
No 83
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.98 E-value=7.9e-05 Score=76.22 Aligned_cols=106 Identities=22% Similarity=0.295 Sum_probs=70.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH----hhhhcC----------CccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL----IDAAFP----------LLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl----~~~~~~----------~~~~v~~ 105 (366)
.||+|+| +|.+|+.++..++..++ +++++|+++ +.++.....+ ...... ...+++.
T Consensus 6 ~kV~VIG-aG~MG~gIA~~la~aG~-------~V~l~d~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 75 (503)
T TIGR02279 6 VTVAVIG-AGAMGAGIAQVAASAGH-------QVLLYDIRA--EALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP 75 (503)
T ss_pred cEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE
Confidence 6899999 59999999999998776 899999975 3343211111 111100 1245777
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHH
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t 172 (366)
++++ +++++||+||.+. | .+..+.+.+...+.+++++++ |+.||.+..-.
T Consensus 76 ~~~~-~~l~~aDlVIEav--~------------E~~~vK~~vf~~l~~~~~~~~--IlasnTStl~i 125 (503)
T TIGR02279 76 VTDL-HALADAGLVIEAI--V------------ENLEVKKALFAQLEELCPADT--IIASNTSSLSI 125 (503)
T ss_pred eCCH-HHhCCCCEEEEcC--c------------CcHHHHHHHHHHHHhhCCCCe--EEEECCCCCCH
Confidence 7776 6789999999882 1 234445566667888886654 57777766533
No 84
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.97 E-value=4.8e-05 Score=73.47 Aligned_cols=118 Identities=12% Similarity=0.176 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~al~~aD 117 (366)
.++|+||||+|++|++++..|++.+.- .+++++|++.. .......++...... ...++.-..++.+++++.|
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~-----~~V~~~~r~~~--~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD 76 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNP-----KKIIIYSRDEL--KQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVD 76 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCC-----cEEEEEcCChh--HHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCC
Confidence 368999999999999999999875310 17888887532 111111111110000 0112222234556778899
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 118 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 118 iVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+||++||....+ ..+..+.+..|+.....+.+.+.+.. .. .++.+|
T Consensus 77 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~-~~-~iV~~S 124 (324)
T TIGR03589 77 YVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG-VK-RVVALS 124 (324)
T ss_pred EEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEEe
Confidence 999999864322 23445678899999999999988763 33 445544
No 85
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.96 E-value=9.3e-05 Score=72.56 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhccc----CCCCCCeEEEEEeCccchHhhhhHHHHHh--hhhc------CCccceE
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIM----LGPDQPVILHMLDIEPAAEALNGVKMELI--DAAF------PLLKGVV 104 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~----~~~~~~~ei~L~D~~~~~~~l~~~~~dl~--~~~~------~~~~~v~ 104 (366)
...+||+|+| +|.+|+++|..|..++. +++ ++.||.+++..+ -+....+++ |.+. +++.++.
T Consensus 9 ~~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~----~V~lw~~~~~~~-~~~~~~~in~~~~N~~ylp~~~Lp~ni~ 82 (365)
T PTZ00345 9 CGPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHN----EVRMWVLEEIVE-GEKLSDIINTKHENVKYLPGIKLPDNIV 82 (365)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCC----eEEEEEeccccc-chHHHHHHHhcCCCcccCCCCcCCCceE
Confidence 3457999999 69999999999987642 121 788998765210 011222332 2221 2356899
Q ss_pred EeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHh--hcCCCcEEEEEcC---C----cchHHHHH
Q 017740 105 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK--HAAPNCKVLVVAN---P----ANTNALIL 175 (366)
Q Consensus 105 ~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~--~~~~~~~viv~tN---P----v~~~t~~~ 175 (366)
.++|+.+++++||+||++ .| ...++++++.+.. +-+++..+|.++- + ...++.++
T Consensus 83 ~tsdl~eav~~aDiIvlA--VP--------------sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi 146 (365)
T PTZ00345 83 AVSDLKEAVEDADLLIFV--IP--------------HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVI 146 (365)
T ss_pred EecCHHHHHhcCCEEEEE--cC--------------hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHH
Confidence 999998999999999988 22 2235666677765 3323444443331 1 12456666
Q ss_pred HHH
Q 017740 176 KEF 178 (366)
Q Consensus 176 ~~~ 178 (366)
.+.
T Consensus 147 ~e~ 149 (365)
T PTZ00345 147 EEE 149 (365)
T ss_pred HHH
Confidence 665
No 86
>PLN02214 cinnamoyl-CoA reductase
Probab=97.96 E-value=7.4e-05 Score=72.70 Aligned_cols=114 Identities=15% Similarity=0.058 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh--cC-CccceEEeCCHhhhhCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FP-LLKGVVATTDVVEACKD 115 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~--~~-~~~~v~~t~~l~~al~~ 115 (366)
+++|+||||+|++|++++..|++.+. +|+..+++... ........+.... .. ...++.-..++.+++++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-------TVKGTVRNPDD-PKNTHLRELEGGKERLILCKADLQDYEALKAAIDG 81 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-------EEEEEeCCchh-hhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhc
Confidence 46899999999999999999988665 67777765321 0111111111100 00 01122223345678889
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 116 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+|+||++|+... .+..+.+..|+.....+.+.+.+.. .. +++.+|
T Consensus 82 ~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~-v~-r~V~~S 126 (342)
T PLN02214 82 CDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAK-VK-RVVITS 126 (342)
T ss_pred CCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcC-CC-EEEEec
Confidence 999999998642 2345667889999999999988764 33 445444
No 87
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.95 E-value=4.2e-05 Score=73.51 Aligned_cols=108 Identities=13% Similarity=0.054 Sum_probs=67.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~al~~aDi 118 (366)
|||+||||+|++|++++..|+..+. +++.++++. +... .+.+.... ...++.-..++.++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-------~V~~l~R~~--~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-------QVRCLVRNL--RKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEEcCh--HHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 4899999999999999999988665 788888753 1111 11111100 01122223356788999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
|+.+++.... +.......|.....++.+++++.. -. +++.+|
T Consensus 68 Vi~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~g-vk-r~I~~S 109 (317)
T CHL00194 68 IIDASTSRPS---DLYNAKQIDWDGKLALIEAAKAAK-IK-RFIFFS 109 (317)
T ss_pred EEECCCCCCC---CccchhhhhHHHHHHHHHHHHHcC-CC-EEEEec
Confidence 9998754221 222345567777888888888864 33 445444
No 88
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.95 E-value=3.8e-05 Score=81.35 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCC-HhhhhC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTD-VVEACK 114 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~-l~~al~ 114 (366)
+++||+||||+||||++++..|+. ++. +|+.+|+... ... .. +.+..... ..++.-..+ +.++++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-------~V~~l~r~~~--~~~-~~--~~~~~~~~~~gDl~d~~~~l~~~l~ 381 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY-------EVYGLDIGSD--AIS-RF--LGHPRFHFVEGDISIHSEWIEYHIK 381 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc-------EEEEEeCCch--hhh-hh--cCCCceEEEeccccCcHHHHHHHhc
Confidence 457999999999999999999987 344 7888887541 111 00 01100000 112211111 345688
Q ss_pred CCcEEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 115 DVNIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 115 ~aDiVIi~aG~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
++|+||++|+... ....+..+....|+....++.+++.++. + +++.+|.
T Consensus 382 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~--~~V~~SS 432 (660)
T PRK08125 382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K--RIIFPST 432 (660)
T ss_pred CCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C--eEEEEcc
Confidence 9999999987543 2223445667889999999999998864 3 4444443
No 89
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=97.93 E-value=6.3e-05 Score=73.19 Aligned_cols=118 Identities=17% Similarity=0.079 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-hcC-CccceEEeCCHhhhhCC-
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFP-LLKGVVATTDVVEACKD- 115 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~~~-~~~~v~~t~~l~~al~~- 115 (366)
+++|+||||+|++|++++..|++.+. +|+.+|++... .......+... ... ...++.-..++.+.+++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-------EVYGYSLDPPT--SPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-------EEEEEeCCCcc--chhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence 36899999999999999999998654 78888876421 11111111100 000 01122112233344554
Q ss_pred -CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 116 -VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 116 -aDiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.|+||++||.+... ..+....+..|+.....+.+.+.+.. ...+++.+|.
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~iv~~SS 127 (349)
T TIGR02622 75 KPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG-SVKAVVNVTS 127 (349)
T ss_pred CCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcC-CCCEEEEEec
Confidence 59999999864321 12334567788888888999887653 2235555554
No 90
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=97.93 E-value=0.00013 Score=70.12 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-c-C----CccceEEeCCHhh
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-F-P----LLKGVVATTDVVE 111 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~-~----~~~~v~~t~~l~~ 111 (366)
+.++|+||||+|+||++++..|+..+. +++...++... .. ....+.... . . ...++.-...+.+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY-------TVKATVRDLTD--RK-KTEHLLALDGAKERLKLFKADLLEESSFEQ 73 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCCcc--hH-HHHHHHhccCCCCceEEEecCCCCcchHHH
Confidence 457999999999999999999988654 67654443211 11 111111100 0 0 0112222234567
Q ss_pred hhCCCcEEEEecCCCCCC-CCChhHHHhhhHHHHHHHHHHHHhh
Q 017740 112 ACKDVNIAVMVGGFPRKE-GMERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~-g~~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
+++++|+||++|+..... .....+.+..|+.....+.+.+.+.
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 74 AIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred HHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 788999999999853211 1122345778898889999888764
No 91
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.91 E-value=0.00017 Score=68.67 Aligned_cols=110 Identities=22% Similarity=0.279 Sum_probs=65.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh----hhhcC----------CccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----DAAFP----------LLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~----~~~~~----------~~~~v~~ 105 (366)
+||+|+| +|.+|+.++..|+..+. +++++|.++ +.++.....+. ..... ....+..
T Consensus 5 ~~V~vIG-~G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (295)
T PLN02545 5 KKVGVVG-AGQMGSGIAQLAAAAGM-------DVWLLDSDP--AALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC 74 (295)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe
Confidence 5899999 59999999999988665 899999875 23321111110 11000 0123455
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHH
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILK 176 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~ 176 (366)
+++. +++++||+||.+. +. +......+...+..++++++ +++||-+.+....+.
T Consensus 75 ~~~~-~~~~~aD~Vieav--~e------------~~~~k~~v~~~l~~~~~~~~--il~s~tS~i~~~~l~ 128 (295)
T PLN02545 75 TTNL-EELRDADFIIEAI--VE------------SEDLKKKLFSELDRICKPSA--ILASNTSSISITRLA 128 (295)
T ss_pred eCCH-HHhCCCCEEEEcC--cc------------CHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH
Confidence 5554 6799999999882 21 12334455555666665665 445666554333333
No 92
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.89 E-value=4.3e-05 Score=74.26 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=66.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHh-hhhcC-CccceE-EeCCHhhhhCC
Q 017740 40 CRVLVTGATGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAFP-LLKGVV-ATTDVVEACKD 115 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~-~~~~~-~~~~v~-~t~~l~~al~~ 115 (366)
|||+||||+||+|++++..|+.. +. +|+.+|+.. +... ++. ..... ...++. ....+.+++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~-------~V~~~~r~~--~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW-------EVYGMDMQT--DRLG----DLVNHPRMHFFEGDITINKEWIEYHVKK 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC-------eEEEEeCcH--HHHH----HhccCCCeEEEeCCCCCCHHHHHHHHcC
Confidence 58999999999999999999863 34 788888643 1111 111 10000 011221 11123356789
Q ss_pred CcEEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 116 VNIAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 116 aDiVIi~aG~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
+|+||++|+... ....+.......|+....++.+.+.+.. .+++.+|.
T Consensus 69 ~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~---~~~v~~SS 118 (347)
T PRK11908 69 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG---KHLVFPST 118 (347)
T ss_pred CCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC---CeEEEEec
Confidence 999999986532 2122334456678888888899888753 35554443
No 93
>PLN02572 UDP-sulfoquinovose synthase
Probab=97.88 E-value=9.2e-05 Score=74.69 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccch--H------hh---hhHHHHHh---hh---hcCC-
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA--E------AL---NGVKMELI---DA---AFPL- 99 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~--~------~l---~~~~~dl~---~~---~~~~- 99 (366)
+++||+||||+||||++++..|+..+. +++++|..... + .+ ......+. +. ....
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 118 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY-------EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELY 118 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEE
Confidence 357899999999999999999998664 78888742100 0 00 00000110 00 0000
Q ss_pred ccceEEeCCHhhhhC--CCcEEEEecCCCCCC-C-CC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE
Q 017740 100 LKGVVATTDVVEACK--DVNIAVMVGGFPRKE-G-ME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLV 163 (366)
Q Consensus 100 ~~~v~~t~~l~~al~--~aDiVIi~aG~~~~~-g-~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv 163 (366)
..++.-...+.++++ +.|+||++|+....+ . .+ ....+..|+.....+.+.+.+++ ...+++.
T Consensus 119 ~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~ 188 (442)
T PLN02572 119 VGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVK 188 (442)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEE
Confidence 012221123344555 479999998653321 1 11 12345689999999999998875 3334443
No 94
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.87 E-value=0.00018 Score=73.67 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=69.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh----------hhhcCCccceEEeCCH
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI----------DAAFPLLKGVVATTDV 109 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~----------~~~~~~~~~v~~t~~l 109 (366)
+||+||| +|.+|+.++..|+..++ +|.++|.++ +.++.....+. ........++..++++
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~~G~-------~V~v~D~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~ 74 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLLAGI-------DVAVFDPHP--EAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASL 74 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC-------eEEEEeCCH--HHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCH
Confidence 5899999 69999999999998766 899999975 33322111000 0000011246777888
Q ss_pred hhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 110 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 110 ~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
.+++++||+|+.+. |. +..+.+.+...+..++++++ ++.||-+......+.+
T Consensus 75 ~ea~~~aD~Vieav--pe------------~~~vk~~l~~~l~~~~~~~~--iI~SsTsgi~~s~l~~ 126 (495)
T PRK07531 75 AEAVAGADWIQESV--PE------------RLDLKRRVLAEIDAAARPDA--LIGSSTSGFLPSDLQE 126 (495)
T ss_pred HHHhcCCCEEEEcC--cC------------CHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHh
Confidence 88999999999872 21 22333445555677775554 5566666544333333
No 95
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.85 E-value=0.00039 Score=69.51 Aligned_cols=112 Identities=25% Similarity=0.334 Sum_probs=71.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC----C----------ccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP----L----------LKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~----~----------~~~v~~ 105 (366)
|||+|+| .|.+|..++..|+..+. ++..+|+++ ++++. +.....+ . ..++..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-------~V~~~d~~~--~~v~~----l~~g~~~~~e~~l~~~~~~~~~~g~l~~ 66 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-------EVTGVDIDQ--EKVDK----LNKGKSPIYEPGLDELLAKALAAGRLRA 66 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-------eEEEEECCH--HHHHH----hhcCCCCCCCCCHHHHHHHhhhcCCeEE
Confidence 4899999 69999999999988665 799999875 23321 2211100 0 123667
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchH
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTN 171 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~ 171 (366)
+++..+++++||+|+++.+.|..... ..+...+....+.+..+.+++..++. .|-|.+..
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~ 127 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTT 127 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCch
Confidence 77877889999999999877654311 12345555666666665545554444 44555544
No 96
>PLN02778 3,5-epimerase/4-reductase
Probab=97.85 E-value=0.00025 Score=67.73 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.|||+||||+||+|++++..|+..+. +++....+. ........++. + .+.|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-------~V~~~~~~~--~~~~~v~~~l~-----------------~--~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-------DFHYGSGRL--ENRASLEADID-----------------A--VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-------EEEEecCcc--CCHHHHHHHHH-----------------h--cCCCE
Confidence 47999999999999999999987654 554432211 00011111111 0 26899
Q ss_pred EEEecCCCCCCC-----CChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 119 AVMVGGFPRKEG-----MERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 119 VIi~aG~~~~~g-----~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
||++||....+. .+..+....|+....++++.+++..
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g 102 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG 102 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998643221 2345677899999999999998874
No 97
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.84 E-value=8.6e-05 Score=72.03 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccch---HhhhhHHHHHhh---hhcC-CccceEEeCCHhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMELID---AAFP-LLKGVVATTDVVEA 112 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~---~~l~~~~~dl~~---~~~~-~~~~v~~t~~l~~a 112 (366)
++|+||||+||||++++..|+..+. +|+.+|+.... +.+.....+... .... ...+++-...+.++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~ 73 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-------EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRI 73 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-------EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHH
Confidence 4899999999999999999988664 78888876421 111111101100 0000 00112111233455
Q ss_pred hCC--CcEEEEecCCCCCC-C-CChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 113 CKD--VNIAVMVGGFPRKE-G-MERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 113 l~~--aDiVIi~aG~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
+++ .|+||++|+..... . .........|......+.+.+.++.
T Consensus 74 ~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~ 120 (343)
T TIGR01472 74 IDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG 120 (343)
T ss_pred HHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 664 59999999864321 1 1223344567777788888888754
No 98
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.82 E-value=0.00013 Score=74.99 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-----c-C--Cc----cceEE
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-----F-P--LL----KGVVA 105 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-----~-~--~~----~~v~~ 105 (366)
..+.|+|+||+|++|++++..|++.+. +|++++++. +.+.....++.+.. . . .. .++.-
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-------~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-------RVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 346799999999999999999988665 788888764 33332222221100 0 0 00 11111
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
..++.+++.++|+||+++|.......+....+..|......+.+.+.+.. - .++|+++
T Consensus 150 ~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag-V-gRIV~VS 207 (576)
T PLN03209 150 PDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK-V-NHFILVT 207 (576)
T ss_pred HHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC-C-CEEEEEc
Confidence 12344578899999999987543212223345567777888888887753 3 3455554
No 99
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.82 E-value=0.00014 Score=70.86 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-cC-CccceEEeCCHhhhhCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FP-LLKGVVATTDVVEACKD 115 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~~-~~~~v~~t~~l~~al~~ 115 (366)
..+||+||||+|+||++++..|++.+. ++++.+++. +.......++.... .. ...++.-...+.+++++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-------TVHATLRDP--AKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcC
Confidence 347999999999999999999988654 677777653 21111111111100 00 00111111234566788
Q ss_pred CcEEEEecCCCCCC---C-CChhH-----HHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 116 VNIAVMVGGFPRKE---G-MERKD-----VMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 116 aDiVIi~aG~~~~~---g-~~r~~-----~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
.|.||++|+..... . .+..+ .+..|+.....+.+.+.++. .-.+++.+|
T Consensus 80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~-~~~~~v~~S 137 (353)
T PLN02896 80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK-TVKRVVFTS 137 (353)
T ss_pred CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC-CccEEEEEe
Confidence 99999999864321 1 12222 23334566777888777652 112445444
No 100
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.80 E-value=0.00063 Score=66.31 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-------cCCccceEEeCCH
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-------FPLLKGVVATTDV 109 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-------~~~~~~v~~t~~l 109 (366)
+.++||+|+| +|.+|+.++..|.+.+ +++++..++ +..+.... .+.. ...+.++..++++
T Consensus 5 ~~~mkI~IiG-aGa~G~alA~~La~~g--------~v~l~~~~~--~~~~~i~~--~~~~~~~l~~~~~l~~~i~~t~d~ 71 (341)
T PRK12439 5 KREPKVVVLG-GGSWGTTVASICARRG--------PTLQWVRSA--ETADDIND--NHRNSRYLGNDVVLSDTLRATTDF 71 (341)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCC--------CEEEEeCCH--HHHHHHHh--cCCCcccCCCCcccCCCeEEECCH
Confidence 4457999999 5999999999998754 356777653 22221111 1111 1112356778888
Q ss_pred hhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch-----HHHHHHHH
Q 017740 110 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT-----NALILKEF 178 (366)
Q Consensus 110 ~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~-----~t~~~~~~ 178 (366)
.++++++|+|+++. | ...++++++.+..+.+++..++.++|-++. +..++.+.
T Consensus 72 ~~a~~~aDlVilav--p--------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~ 129 (341)
T PRK12439 72 AEAANCADVVVMGV--P--------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV 129 (341)
T ss_pred HHHHhcCCEEEEEe--C--------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence 88999999999982 1 223556666777665566677888887664 45566654
No 101
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.79 E-value=9e-05 Score=72.05 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~l~~al~~aD 117 (366)
+.+++||||+||+|.+++..|++.+.. .+++++|..+..........++....... ...+.....+..|++++
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~- 77 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA- 77 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-
Confidence 468999999999999999999986532 28999998763222222222220110111 12333345667899999
Q ss_pred EEEEec-CCCCCCCC-ChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 118 IAVMVG-GFPRKEGM-ERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 118 iVIi~a-G~~~~~g~-~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
.|++.+ +....... .++.....|+...+.+.+++.+..
T Consensus 78 ~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~ 117 (361)
T KOG1430|consen 78 VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG 117 (361)
T ss_pred eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhC
Confidence 556554 33222223 366677899999999999999986
No 102
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.79 E-value=0.00035 Score=67.08 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=50.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHH----HH---Hhhhhc-------CCccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVK----ME---LIDAAF-------PLLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~----~d---l~~~~~-------~~~~~v~~ 105 (366)
+||+|+| +|.+|+.++..|+..++ +|+++|+++ +.++... .. +..... ....++..
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~-------~V~v~d~~~--~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~ 72 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGH-------EVRLWDADP--AAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV 72 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCC-------eeEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE
Confidence 5899999 69999999999998765 799999975 2222111 01 111000 01235677
Q ss_pred eCCHhhhhCCCcEEEEe
Q 017740 106 TTDVVEACKDVNIAVMV 122 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~ 122 (366)
+.++.+++++||+|+.+
T Consensus 73 ~~~~~~a~~~ad~Vi~a 89 (308)
T PRK06129 73 TDSLADAVADADYVQES 89 (308)
T ss_pred ECcHHHhhCCCCEEEEC
Confidence 88888889999999987
No 103
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.79 E-value=7.1e-05 Score=71.37 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC--CCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~--~aD 117 (366)
|||+||||+||+|++++..|+..+ +++.+|+.. . ....|+.+ ...+.++++ +.|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--------~V~~~~~~~--~---~~~~Dl~d-----------~~~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--------NLIALDVHS--T---DYCGDFSN-----------PEGVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--------CEEEecccc--c---cccCCCCC-----------HHHHHHHHHhcCCC
Confidence 489999999999999999988643 356666532 1 01112211 122334555 589
Q ss_pred EEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 118 IAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 118 iVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
+||++|+..... ..+.......|+....++++.+.+..
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g 96 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG 96 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999998764321 12233445688999999999998864
No 104
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.78 E-value=0.0001 Score=70.45 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=71.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~al~~aDi 118 (366)
+||+|+||+|++|++++..|++.+. +++.+++++. ... ++.+.... ...++.-..++.++++++|+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~----~~~~~~~~~~~~D~~~~~~l~~~~~~~d~ 67 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-------EVRVLVRPTS--DRR----NLEGLDVEIVEGDLRDPASLRKAVAGCRA 67 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-------EEEEEEecCc--ccc----ccccCCceEEEeeCCCHHHHHHHHhCCCE
Confidence 4899999999999999999988654 7888887642 111 11111000 00111112345567889999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
|+.+++.......+.......|+.....+.+.+.+.. -. +++.++.
T Consensus 68 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~SS 113 (328)
T TIGR03466 68 LFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAG-VE-RVVYTSS 113 (328)
T ss_pred EEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhC-CC-eEEEEec
Confidence 9999875432233456677888988888988887763 22 4454443
No 105
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00016 Score=68.56 Aligned_cols=101 Identities=21% Similarity=0.174 Sum_probs=65.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC-cEE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV-NIA 119 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a-DiV 119 (366)
+|+||||+||||++++..|++.+. +++.+|+.... ..... .+..+. ...+.-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~---~~~~~~-~~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-------DVRGLDRLRDG--LDPLL---SGVEFV-VLDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-------eEEEEeCCCcc--ccccc---ccccee-eecccchHHHHHHHhcCCCEE
Confidence 499999999999999999998655 78999975421 11110 111110 01111112334556666 999
Q ss_pred EEecCCCCCCCCC---hhHHHhhhHHHHHHHHHHHHhh
Q 017740 120 VMVGGFPRKEGME---RKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 120 Ii~aG~~~~~g~~---r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
+++++........ ..++...|+...+++.+++.+.
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~ 106 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA 106 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998775543322 2357889999999999999983
No 106
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.00018 Score=67.61 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=69.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhhhh--CCC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEAC--KDV 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~al--~~a 116 (366)
|+|+||||+|+|||+.+..|+..+. +++.+|.-.+ +...-+.....+ ...++.-..-+.+.+ ..-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~-------~vvV~DNL~~-----g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~i 68 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH-------EVVVLDNLSN-----GHKIALLKLQFKFYEGDLLDRALLTAVFEENKI 68 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC-------eEEEEecCCC-----CCHHHhhhccCceEEeccccHHHHHHHHHhcCC
Confidence 4899999999999999999998776 8999997542 222222111011 112222222222222 257
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 117 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 117 DiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
|.|++.||....+ -.....+...|+--...+.++|.+++
T Consensus 69 daViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~g 109 (329)
T COG1087 69 DAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG 109 (329)
T ss_pred CEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhC
Confidence 8899998765432 13467789999999999999999986
No 107
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.73 E-value=0.0003 Score=55.11 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=57.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEE-eCccchHhhhhHHHHHhhhhcCCccceEEeC-CHhhhhCCCcE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAAFPLLKGVVATT-DVVEACKDVNI 118 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~-D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~-~l~~al~~aDi 118 (366)
||+|+| +|.+|++++..|+..+. . +.++.++ ++++ +++.....++. +.... +..++++++|+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~-~---~~~v~~~~~r~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~adv 64 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGI-K---PHEVIIVSSRSP--EKAAELAKEYG---------VQATADDNEEAAQEADV 64 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-----GGEEEEEEESSH--HHHHHHHHHCT---------TEEESEEHHHHHHHTSE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCC-C---ceeEEeeccCcH--HHHHHHHHhhc---------cccccCChHHhhccCCE
Confidence 799999 69999999999988763 1 1278756 8764 33332222221 12233 66789999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
|+++. |. . .+.++++.+.... ++..+|-++||
T Consensus 65 vilav--~p---~-----------~~~~v~~~i~~~~-~~~~vis~~ag 96 (96)
T PF03807_consen 65 VILAV--KP---Q-----------QLPEVLSEIPHLL-KGKLVISIAAG 96 (96)
T ss_dssp EEE-S---G---G-----------GHHHHHHHHHHHH-TTSEEEEESTT
T ss_pred EEEEE--CH---H-----------HHHHHHHHHhhcc-CCCEEEEeCCC
Confidence 99982 11 0 1445666664443 55566666665
No 108
>PLN02240 UDP-glucose 4-epimerase
Probab=97.72 E-value=0.00055 Score=66.33 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchH-hhhhHHHHHhhhhcCC----ccceEEeCCHhh
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-ALNGVKMELIDAAFPL----LKGVVATTDVVE 111 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~-~l~~~~~dl~~~~~~~----~~~v~~t~~l~~ 111 (366)
..++||+|+||+|++|++++..|+..+. +|+++|+..... .......+........ ..++.-..++.+
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~ 75 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-------KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEK 75 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHH
Confidence 3457999999999999999999987654 788887532110 0001111111000000 011111123333
Q ss_pred hhC--CCcEEEEecCCCCCC-C-CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 112 ACK--DVNIAVMVGGFPRKE-G-MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 112 al~--~aDiVIi~aG~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+++ +.|+||++++..... . ......+..|+.....+.+.+.+.. .. .++.+|
T Consensus 76 ~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~S 131 (352)
T PLN02240 76 VFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG-CK-KLVFSS 131 (352)
T ss_pred HHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEEc
Confidence 343 689999998864321 1 2345577889988889998887753 22 445544
No 109
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.70 E-value=0.00011 Score=69.09 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=65.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVM 121 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi 121 (366)
|+||||+|++|++++..|+..+. +|+.++++... ..... ... ...+.. ....++++++|+||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~---~~~----~~~~~~-~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-------EVTILTRSPPA--GANTK---WEG----YKPWAP-LAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-------EEEEEeCCCCC--CCccc---cee----eecccc-cchhhhcCCCCEEEE
Confidence 68999999999999999988654 78888886421 11100 000 001111 344577899999999
Q ss_pred ecCCCCCCC----CChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 122 VGGFPRKEG----MERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 122 ~aG~~~~~g----~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
++|.+...+ ....++...|+...+.+.+.+.++.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~ 101 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAE 101 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 998754221 1234566788999999999998874
No 110
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=97.70 E-value=0.0003 Score=67.02 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=63.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhh-hhHHHHHhhhhcCCccceEEeCCH-hhhh-----C
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEAL-NGVKMELIDAAFPLLKGVVATTDV-VEAC-----K 114 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l-~~~~~dl~~~~~~~~~~v~~t~~l-~~al-----~ 114 (366)
|+||||+||+|++|+..|+..+.- .+.++|........ .-...|+.+ .....+. .+++ .
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT------DILVVDNLKDGTKFVNLVDLDIAD--------YMDKEDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCc------eEEEecCCCcchHHHhhhhhhhhh--------hhhHHHHHHHHhcccccC
Confidence 899999999999999999876541 46677764311100 000111111 1001111 2222 3
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
++|+||++|+.+.....+.......|+....++.+.+.+.. .+++..|
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~---~~~i~~S 115 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE---IPFLYAS 115 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcC---CcEEEEc
Confidence 68999999976443333444567888988999999988764 2445444
No 111
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.69 E-value=0.00014 Score=63.58 Aligned_cols=97 Identities=24% Similarity=0.257 Sum_probs=63.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVM 121 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi 121 (366)
|+|+||+|++|+.++..|++.+. +++.+-+++ +.+.. .........++.-..++.++++++|.|+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-------~V~~~~R~~--~~~~~-----~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-------EVTALVRSP--SKAED-----SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-------EEEEEESSG--GGHHH-----CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC-------EEEEEecCc--hhccc-----ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 78999999999999999998764 888888764 22221 11000000111112345778999999999
Q ss_pred ecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 122 VGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 122 ~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+.|.+.+ ....++.+.+.+++.. .. +++++|
T Consensus 67 ~~~~~~~-----------~~~~~~~~~~a~~~~~-~~-~~v~~s 97 (183)
T PF13460_consen 67 AAGPPPK-----------DVDAAKNIIEAAKKAG-VK-RVVYLS 97 (183)
T ss_dssp CCHSTTT-----------HHHHHHHHHHHHHHTT-SS-EEEEEE
T ss_pred hhhhhcc-----------cccccccccccccccc-cc-cceeee
Confidence 9876553 1666788888888864 32 444444
No 112
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.64 E-value=0.00062 Score=65.61 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=67.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC----ccceEEeCCHhhhhC-
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----LKGVVATTDVVEACK- 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~----~~~v~~t~~l~~al~- 114 (366)
|||+||||+|++|++++..|+..+. ++++++...... ......+.+..... ..++.-...+.++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-------~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-------DVVILDNLCNSK--RSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-------eEEEEecCCCch--HhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc
Confidence 4899999999999999999987654 788887532111 11111111110000 011111112233444
Q ss_pred -CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 115 -DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 115 -~aDiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
++|+||++||..... .....+.+..|+.....+.+.+.+.. .. .++.+|
T Consensus 72 ~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~-~~v~~S 123 (338)
T PRK10675 72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VK-NLIFSS 123 (338)
T ss_pred CCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC-CC-EEEEec
Confidence 589999998764321 12345678889999999999888763 22 445444
No 113
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.64 E-value=0.00014 Score=67.60 Aligned_cols=114 Identities=18% Similarity=0.091 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
..+.||+||||+|||||+|+..|+..+. ++...|.-.+ +....+.|......-.+........-+..+
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh-------~VIa~Dn~ft-----g~k~n~~~~~~~~~fel~~hdv~~pl~~ev 92 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH-------EVIALDNYFT-----GRKENLEHWIGHPNFELIRHDVVEPLLKEV 92 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC-------eEEEEecccc-----cchhhcchhccCcceeEEEeechhHHHHHh
Confidence 4568999999999999999999987654 7888886532 233333333211111222223334467789
Q ss_pred cEEEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 117 NIAVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 117 DiVIi~aG~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
|-|+..|.....++ .+..+.+..|.-........+++.. ++++.+|
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~---aR~l~aS 140 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARFLLAS 140 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC---ceEEEee
Confidence 99988875432222 3334445555555555555555543 4544433
No 114
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.63 E-value=0.00038 Score=66.31 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=67.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc--CCc---cceEEeCCHhhhhC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--PLL---KGVVATTDVVEACK 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~--~~~---~~v~~t~~l~~al~ 114 (366)
|||+|+| +|.+|..++..|.+.+. ++.++++ + +.++... + ..... ... ......++..++.+
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~g~-------~V~~~~r-~--~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEAGR-------DVTFLVR-P--KRAKALR-E-RGLVIRSDHGDAVVPGPVITDPEELTG 67 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCC-------ceEEEec-H--HHHHHHH-h-CCeEEEeCCCeEEecceeecCHHHccC
Confidence 4899999 59999999999988654 7899998 3 2222211 1 11100 000 01122345555568
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCce
Q 017740 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 187 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki 187 (366)
++|+|+++.-.+. ..++.+.+..+.+++..++...|.++....+ .+. ++.+++
T Consensus 68 ~~d~vilavk~~~----------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l-~~~---~~~~~v 120 (305)
T PRK12921 68 PFDLVILAVKAYQ----------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL-EPY---FGRERV 120 (305)
T ss_pred CCCEEEEEecccC----------------HHHHHHHHHhhcCCCCEEEEeeCCCChHHHH-HHh---CCcccE
Confidence 9999999842211 2334455555544566677788988755433 332 555564
No 115
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.60 E-value=0.0016 Score=65.41 Aligned_cols=112 Identities=12% Similarity=0.125 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC----------ccceEEeCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----------LKGVVATTD 108 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~----------~~~v~~t~~ 108 (366)
+|||+|+| .|++|..++..|+.+ + +++.+|+++ ++++ .+.....+. ..++..+++
T Consensus 6 ~mkI~vIG-lGyvGlpmA~~la~~-~-------~V~g~D~~~--~~ve----~l~~G~~~~~e~~~~~l~~~g~l~~t~~ 70 (425)
T PRK15182 6 EVKIAIIG-LGYVGLPLAVEFGKS-R-------QVVGFDVNK--KRIL----ELKNGVDVNLETTEEELREARYLKFTSE 70 (425)
T ss_pred CCeEEEEC-cCcchHHHHHHHhcC-C-------EEEEEeCCH--HHHH----HHHCcCCCCCCCCHHHHHhhCCeeEEeC
Confidence 36999999 899999999998764 3 899999975 3332 233222110 123455666
Q ss_pred HhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchHH
Q 017740 109 VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTNA 172 (366)
Q Consensus 109 l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~t 172 (366)
. +++++||+++++.+.|.+... ..+++.+....+.+..+.+++..+|+ +|-|....-
T Consensus 71 ~-~~~~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~ 128 (425)
T PRK15182 71 I-EKIKECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTE 128 (425)
T ss_pred H-HHHcCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchH
Confidence 4 579999999999888864321 12344455555666666545544444 666766543
No 116
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.60 E-value=0.00083 Score=64.56 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh----cCCccceEEeCCHhhhhCC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEACKD 115 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~----~~~~~~v~~t~~l~~al~~ 115 (366)
+||+|+| +|.+|+.++..|+..+. ++.++|+++ +.++....+..+.. .....++..+.+..+++++
T Consensus 2 mkI~iiG-~G~mG~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T PRK00094 2 MKIAVLG-AGSWGTALAIVLARNGH-------DVTLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD 71 (325)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC
Confidence 5899999 69999999999988655 789999864 22332221110100 0011245556677778899
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc
Q 017740 116 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 169 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~ 169 (366)
+|+|+++... ....++.+.+..+.+++..++..+|-++
T Consensus 72 ~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 72 ADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 9999998311 1133444555555546666676776543
No 117
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.60 E-value=0.0016 Score=58.51 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
||+++|+| +|.+|+.++.++...++ |+..-..+.. +.+......+ ...+++. ...+|.+.+|+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-------eV~igs~r~~-~~~~a~a~~l-------~~~i~~~-~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-------EVIIGSSRGP-KALAAAAAAL-------GPLITGG-SNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-------eEEEecCCCh-hHHHHHHHhh-------ccccccC-ChHHHHhcCCE
Confidence 36899999 79999999999998765 7877766542 2333222222 1224443 45789999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCc
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 168 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv 168 (366)
|+++ .| +.. ...+.+.+...- .+-++|=+|||.
T Consensus 64 VvLA--VP----------~~a----~~~v~~~l~~~~-~~KIvID~tnp~ 96 (211)
T COG2085 64 VVLA--VP----------FEA----IPDVLAELRDAL-GGKIVIDATNPI 96 (211)
T ss_pred EEEe--cc----------HHH----HHhHHHHHHHHh-CCeEEEecCCCc
Confidence 9998 22 112 334444454433 344566699995
No 118
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.60 E-value=0.00027 Score=67.00 Aligned_cols=118 Identities=18% Similarity=0.099 Sum_probs=68.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-hcC-CccceEEeCCHhhhhCC--C
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFP-LLKGVVATTDVVEACKD--V 116 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~~~-~~~~v~~t~~l~~al~~--a 116 (366)
||+||||+|++|++++..|+..+. ..++.++|....... .....++... ... ...++.-..++.+++++ +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~-----~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP-----DAEVIVLDKLTYAGN-LENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQP 74 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC-----CCEEEEecCCCcchh-hhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCC
Confidence 589999999999999999987431 016788875321111 1111111110 000 00112212234556776 8
Q ss_pred cEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 117 NIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 117 DiVIi~aG~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
|+||.+++.... ...........|......+++.+.+.. .+.+++.+|
T Consensus 75 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~i~~S 124 (317)
T TIGR01181 75 DAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYW-HEFRFHHIS 124 (317)
T ss_pred CEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEee
Confidence 999999875321 112344567889988999999888764 344555544
No 119
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=97.59 E-value=0.00045 Score=67.13 Aligned_cols=172 Identities=11% Similarity=0.071 Sum_probs=90.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh----hcCC-ccceEEeCCHhhhhC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AFPL-LKGVVATTDVVEACK 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~----~~~~-~~~v~~t~~l~~al~ 114 (366)
+||+||||+|+||++++..|+..+.. .+++.|...... ....+.+. .... ..++.-..++.++++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~------~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 71 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSD------AVVVVDKLTYAG----NLMSLAPVAQSERFAFEKVDICDRAELARVFT 71 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCC------EEEEEecCcccc----chhhhhhcccCCceEEEECCCcChHHHHHHHh
Confidence 58999999999999999999876531 356667542111 11111110 0000 012221223444565
Q ss_pred C--CcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhc------CCC-cEEEEEcCCcchHH------HHHHH
Q 017740 115 D--VNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHA------APN-CKVLVVANPANTNA------LILKE 177 (366)
Q Consensus 115 ~--aDiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~------~~~-~~viv~tNPv~~~t------~~~~~ 177 (366)
+ .|+||++||..... ..........|+.....+.+.+.++. .+. .+++.+|... +.. ..+.+
T Consensus 72 ~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E 150 (355)
T PRK10217 72 EHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTE 150 (355)
T ss_pred hcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCC
Confidence 3 89999999865321 12345677889998999999887641 012 2445444321 000 00001
Q ss_pred HCCCCCCCceeecccchHHHHHHHHHHHhCCCCCCeeeeEEEccCC
Q 017740 178 FAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHS 223 (366)
Q Consensus 178 ~~s~~~~~ki~~gt~lds~R~~~~la~~l~v~~~~v~~~~ViG~hg 223 (366)
. ....+...-+.+-....++....++..+++..-++...|+|.+.
T Consensus 151 ~-~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 151 T-TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred C-CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 0 01112212222333334444555677777776676666778643
No 120
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.58 E-value=0.0018 Score=64.18 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=72.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC--------CccceEEeCCHhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--------LLKGVVATTDVVE 111 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~--------~~~~v~~t~~l~~ 111 (366)
|||+|+| .|.+|..++..++. ++ +++.+|+++ ++++..........-+ ...++..+.+..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-------~VigvD~d~--~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-------EVVALDILP--SRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-------cEEEEECCH--HHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 4899999 69999999977664 44 799999975 3333211100000000 1124555666778
Q ss_pred hhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEE-EEcCCcchHHHHHHH
Q 017740 112 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL-VVANPANTNALILKE 177 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~vi-v~tNPv~~~t~~~~~ 177 (366)
+.++||+|+++.+.|...... ..+.+.+.+..+.+.+. +++..++ -.|-|.+..-.+...
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l~~~ 130 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAMHKK 130 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHHHHH
Confidence 889999999997665321111 12345555566666664 4555444 467788776555543
No 121
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=97.57 E-value=0.00027 Score=68.43 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccch---HhhhhHHHHHhhh--hcC-CccceEEeCCHhhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA---EALNGVKMELIDA--AFP-LLKGVVATTDVVEA 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~---~~l~~~~~dl~~~--~~~-~~~~v~~t~~l~~a 112 (366)
+++|+||||+|++|++++..|+..+. +++.+++++.. +.+.....+.... ... ...++.-..++.++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRW 78 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHH
Confidence 46899999999999999999998665 78888765311 1111110000000 000 00112111233344
Q ss_pred hCC--CcEEEEecCCCCCC-C-CChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 113 CKD--VNIAVMVGGFPRKE-G-MERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 113 l~~--aDiVIi~aG~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
+++ .|+||++|+..... . .+....+..|+.....+.+.+.++.
T Consensus 79 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~ 125 (340)
T PLN02653 79 LDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHG 125 (340)
T ss_pred HHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhc
Confidence 554 59999999864321 1 2233445678888888888888775
No 122
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.56 E-value=0.00041 Score=67.37 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhh-hhcC-CccceEEeCCHhhhhC--C
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID-AAFP-LLKGVVATTDVVEACK--D 115 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~-~~~~-~~~~v~~t~~l~~al~--~ 115 (366)
|||+||||+|++|++++..|+..+.. .+..+|......... ....+.. .... ...++.-..++.++++ +
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD------SVVNVDKLTYAGNLE-SLADVSDSERYVFEHADICDRAELDRIFAQHQ 73 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC------eEEEecCCCccchHH-HHHhcccCCceEEEEecCCCHHHHHHHHHhcC
Confidence 48999999999999999999875431 355566432101111 0001100 0000 0011111123344554 4
Q ss_pred CcEEEEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhh
Q 017740 116 VNIAVMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 116 aDiVIi~aG~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
.|+||++||.... ...+..+....|+.....+.+.+.++
T Consensus 74 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 74 PDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred CCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 7999999986431 11234567889999999999998875
No 123
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.56 E-value=0.00089 Score=64.68 Aligned_cols=104 Identities=11% Similarity=0.247 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh----cCCccceEEeCCHhhhh-C
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA----FPLLKGVVATTDVVEAC-K 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~----~~~~~~v~~t~~l~~al-~ 114 (366)
|||+|+| +|.+|+.++..|.+.+. ++.++++++ +.++....+-.+.. .....++..+.++.+++ .
T Consensus 1 MkI~IiG-aGa~G~ala~~L~~~g~-------~V~l~~r~~--~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILG-AGSFGTAIAIALSSKKI-------SVNLWGRNH--TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEecCH--HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 4899999 59999999999988654 789999864 22222211100111 11224677778887777 5
Q ss_pred CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHh-hcCCCcEEEEEcCCcc
Q 017740 115 DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK-HAAPNCKVLVVANPAN 169 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~-~~~~~~~viv~tNPv~ 169 (366)
++|+++++. | ...+.+..+.+.. +.+++..++..+|=++
T Consensus 71 ~~Dliiiav--k--------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 71 NATCIILAV--P--------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CCCEEEEEe--C--------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 899999982 1 1224455555554 4345666677787664
No 124
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.56 E-value=0.00064 Score=59.02 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
|+||.++| .|.+|+.++.+|+..++ ++..||++. ++++ ++.+. ......++.++++++|+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-------~v~~~d~~~--~~~~----~~~~~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-------EVTVYDRSP--EKAE----ALAEA------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-------EEEEEESSH--HHHH----HHHHT------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-------eEEeeccch--hhhh----hhHHh------hhhhhhhhhhHhhcccc
Confidence 36999999 79999999999998766 899999864 3222 23222 14667788899999999
Q ss_pred EEEe
Q 017740 119 AVMV 122 (366)
Q Consensus 119 VIi~ 122 (366)
|+.+
T Consensus 61 vi~~ 64 (163)
T PF03446_consen 61 VILC 64 (163)
T ss_dssp EEE-
T ss_pred eEee
Confidence 9987
No 125
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.55 E-value=0.0013 Score=62.84 Aligned_cols=131 Identities=24% Similarity=0.409 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcc----cCCCCCCeEEEEEeCccchHhhhh---HHHHH---hhhhcC------Ccc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGI----MLGPDQPVILHMLDIEPAAEALNG---VKMEL---IDAAFP------LLK 101 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~----~~~~~~~~ei~L~D~~~~~~~l~~---~~~dl---~~~~~~------~~~ 101 (366)
.+.||+|+| +|.||++++..+...- .+. . +++.+-..+ ...+ ...|. .|.+.. ++.
T Consensus 20 ~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~--~--~Vrmwv~ee---~i~~~~~~L~eiIN~~heN~KYlpg~~lP~ 91 (372)
T KOG2711|consen 20 DPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFD--P--QVRMWVFEE---EINGEAEKLTEIINSRHENVKYLPGIKLPE 91 (372)
T ss_pred CceEEEEEc-cChHHHHHHHHHhhhhhhccccC--c--eeeEEEecc---ccCChhHHHHHHhccccccccccCCccCCC
Confidence 357999999 7999999998886531 222 1 555555432 2222 22222 233321 357
Q ss_pred ceEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC--------C-cchHH
Q 017740 102 GVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN--------P-ANTNA 172 (366)
Q Consensus 102 ~v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN--------P-v~~~t 172 (366)
|+...+|+.++++|||++|+. .|. +.+..+++++..+-+|++..|-.+- | +.+++
T Consensus 92 NvvAv~dl~ea~~dADilvf~--vPh--------------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS 155 (372)
T KOG2711|consen 92 NVVAVPDLVEAAKDADILVFV--VPH--------------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLIS 155 (372)
T ss_pred CeEecchHHHHhccCCEEEEe--CCh--------------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehH
Confidence 899999999999999999988 332 2255788888888777665443321 2 35667
Q ss_pred HHHHHHCCCCCCCceeecccch
Q 017740 173 LILKEFAPSIPAKNITCLTRLD 194 (366)
Q Consensus 173 ~~~~~~~s~~~~~ki~~gt~ld 194 (366)
.++.+. .|+|.. +.+|+++.
T Consensus 156 ~iI~~~-lgI~~~-vL~GaNiA 175 (372)
T KOG2711|consen 156 QIIHRA-LGIPCS-VLMGANIA 175 (372)
T ss_pred HHHHHH-hCCCce-eecCCchH
Confidence 777665 466644 44445543
No 126
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.54 E-value=0.00064 Score=62.38 Aligned_cols=120 Identities=18% Similarity=0.119 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhhh--
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEAC-- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~al-- 113 (366)
+++++|+||+|++|++++..|++.+. ++++.+++.. +.++....++...... ...++.-..+..+++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-------~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-------HVVVNYRQKA-PRANKVVAEIEAAGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCch-HhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 36899999999999999999987654 6777776532 2222222223211000 001111111111122
Q ss_pred -----CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 114 -----KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 114 -----~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.+.|++|..+|.......+....+..|......+.+.+..+...+..+++++-
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 35799999987543222223344566777677777777765423445555543
No 127
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.53 E-value=0.00042 Score=73.53 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh-hhhcCCc----cceEEeCCHhhhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI-DAAFPLL----KGVVATTDVVEAC 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~-~~~~~~~----~~v~~t~~l~~al 113 (366)
++||+||||+||||++++..|++.+. + .+|+.+|.....+.+. .+. ....+.. .++.-.....+.+
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~-~----~~V~~~d~~~~~~~~~----~l~~~~~~~~v~~~~~Dl~d~~~~~~~~ 76 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYP-D----YKIVVLDKLDYCSNLK----NLNPSKSSPNFKFVKGDIASADLVNYLL 76 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCC-C----CEEEEEeCCCccchhh----hhhhcccCCCeEEEECCCCChHHHHHHH
Confidence 47999999999999999999987521 1 1788888642101111 111 0000000 1111001111222
Q ss_pred --CCCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 114 --KDVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 114 --~~aDiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.+.|+||++|+..... ..+..+....|+.....+.+.+++.. .-.++|.+|.
T Consensus 77 ~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~vkr~I~~SS 132 (668)
T PLN02260 77 ITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG-QIRRFIHVST 132 (668)
T ss_pred hhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEcc
Confidence 5799999999875321 12334567789998999999988864 2224555543
No 128
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.53 E-value=0.00091 Score=64.91 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-------CccceEEeCCHhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-------LLKGVVATTDVVEA 112 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-------~~~~v~~t~~l~~a 112 (366)
+||+|+| +|.+|+.++..|.+.+. ++.++|+++. .+....+-...... ...++..+++. ++
T Consensus 3 mkI~IiG-~G~mG~~~A~~L~~~G~-------~V~~~~r~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~ 70 (341)
T PRK08229 3 ARICVLG-AGSIGCYLGGRLAAAGA-------DVTLIGRARI---GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AA 70 (341)
T ss_pred ceEEEEC-CCHHHHHHHHHHHhcCC-------cEEEEecHHH---HHHHHhcCceeecCCCcceecccceeEeccCh-hh
Confidence 6899999 69999999999988765 7899997531 11111000000000 01234445555 67
Q ss_pred hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchH
Q 017740 113 CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 171 (366)
Q Consensus 113 l~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~ 171 (366)
++++|+|+++...+. ..++.+.+..+.+++..++..+|..+..
T Consensus 71 ~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 71 LATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred ccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 899999999853221 1123344555544666667788877654
No 129
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.52 E-value=0.00041 Score=65.20 Aligned_cols=95 Identities=20% Similarity=0.370 Sum_probs=63.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC--cE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV--NI 118 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a--Di 118 (366)
||+|+||+|++|++++..|+..+. +++.+++.. .|+.+ ..++.++++++ |+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-------~v~~~~r~~---------~d~~~-----------~~~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-------VVVALTSSQ---------LDLTD-----------PEALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-------EEEEeCCcc---------cCCCC-----------HHHHHHHHHhCCCCE
Confidence 689999999999999999987654 777777531 12211 12334455554 99
Q ss_pred EEEecCCCCCCC--CChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 119 AVMVGGFPRKEG--MERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 119 VIi~aG~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
||+++|...... .........|+.....+++.+.+.. . +++.+|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~v~~S 99 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG-A--RLVHIS 99 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEe
Confidence 999988643221 2344567788888899998887753 2 444444
No 130
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.50 E-value=0.00044 Score=68.66 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhh--HHHHHhhhhcCCc----cceEEeCCHh
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNG--VKMELIDAAFPLL----KGVVATTDVV 110 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~--~~~dl~~~~~~~~----~~v~~t~~l~ 110 (366)
.+.+||+|+||+|++|++++..|+..+. ++++++++.. .... ...++... .+.. .++.-..++.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~-------~V~~l~R~~~--~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~l~ 127 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY-------NVVAVAREKS--GIRGKNGKEDTKKE-LPGAEVVFGDVTDADSLR 127 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEEechh--hccccchhhHHhhh-cCCceEEEeeCCCHHHHH
Confidence 3457999999999999999999987664 7888887642 1110 00111100 0111 1111122344
Q ss_pred hhhC----CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 111 EACK----DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 111 ~al~----~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
++++ ++|+||.++|.+... ..+....|.....++.+.+++.. -. .++.+|
T Consensus 128 ~~~~~~~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~g-v~-r~V~iS 181 (390)
T PLN02657 128 KVLFSEGDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVG-AK-HFVLLS 181 (390)
T ss_pred HHHHHhCCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcC-CC-EEEEEe
Confidence 5566 589999987753311 11234556777778888887764 22 344444
No 131
>PLN02686 cinnamoyl-CoA reductase
Probab=97.50 E-value=0.00052 Score=67.48 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh--------hcC-CccceEEeCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA--------AFP-LLKGVVATTD 108 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~--------~~~-~~~~v~~t~~ 108 (366)
++++|+||||+||+|++++..|++.+. +++++..+. +.+... .++... ... ...++.-..+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-------~V~~~~r~~--~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-------SVRIAVDTQ--EDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 357999999999999999999998665 676655432 111111 111100 000 0112222233
Q ss_pred HhhhhCCCcEEEEecCCCCCCCC--ChhHHHhhhHHHHHHHHHHHHhh
Q 017740 109 VVEACKDVNIAVMVGGFPRKEGM--ERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 109 l~~al~~aDiVIi~aG~~~~~g~--~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
+.++++++|.|+++++.....+. ........|.....++.+.+.+.
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 45678899999998875322221 12344567888888999988875
No 132
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.49 E-value=0.0015 Score=62.11 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-hcCCccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~~~~~~~v~~t~~l~~al~~aDi 118 (366)
|||+|+| +|.+|+.++..|.+.+. ++.++++++ +.++....+-... .......+..+.+..+ ++++|+
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~~g~-------~V~~~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQAGH-------DVTLVARRG--AHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-------eEEEEECCh--HHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCE
Confidence 4899999 59999999999987654 799999853 2222111100000 0000011122344433 489999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI 174 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~ 174 (366)
|+++..... ..++.+.+..+.+++..++...|.++....+
T Consensus 70 vila~k~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l 109 (304)
T PRK06522 70 VILAVKAYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEEL 109 (304)
T ss_pred EEEeccccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence 999832211 2344455555444566778889988765433
No 133
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.49 E-value=0.00062 Score=62.36 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.+++|+|+||+|++|+.++..|++.+. ++++++++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-------~V~~~~r~~ 39 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-------RVVVTDRNE 39 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 346999999999999999999998665 789999875
No 134
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.48 E-value=0.00057 Score=72.11 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHh--cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc-CCccceEE-----eCCHhh
Q 017740 40 CRVLVTGATGQIGYALVPMIAR--GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVA-----TTDVVE 111 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~--~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~-~~~~~v~~-----t~~l~~ 111 (366)
|||+||||+||+|++++..|+. .+. +|+.++++.....+........+... ....++.- .....+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~-------~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~ 73 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA-------TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIA 73 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC-------EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHH
Confidence 4899999999999999999984 322 78888875422222211111000000 00011110 011223
Q ss_pred hhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 112 ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
.++++|+||++|+.... ..+..+....|+.....+++.+.+..
T Consensus 74 ~l~~~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~ 116 (657)
T PRK07201 74 ELGDIDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQ 116 (657)
T ss_pred HhcCCCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcC
Confidence 45899999999986432 23445567789999999999888763
No 135
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.47 E-value=0.0013 Score=63.55 Aligned_cols=74 Identities=26% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh----hcCCccceEEeCCHhhhhC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA----AFPLLKGVVATTDVVEACK 114 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~----~~~~~~~v~~t~~l~~al~ 114 (366)
+|||+|+| +|.+|+.++..|+..+. +++++|+++ +.++.......+. ......++..+.++.++++
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~~G~-------~V~~~~r~~--~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAASKGV-------PVRLWARRP--EFAAALAAERENREYLPGVALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc
Confidence 36999999 69999999999998765 799999964 2222221110000 1111233666778878899
Q ss_pred CCcEEEEe
Q 017740 115 DVNIAVMV 122 (366)
Q Consensus 115 ~aDiVIi~ 122 (366)
++|+|+++
T Consensus 74 ~aD~Vi~~ 81 (328)
T PRK14618 74 GADFAVVA 81 (328)
T ss_pred CCCEEEEE
Confidence 99999988
No 136
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.42 E-value=0.001 Score=61.50 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhh------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~a------ 112 (366)
.++++|+||+|++|.+++..|++.+. ++++.|++. +.+.....++.........++.-..+..++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA-------RVVIADIKP--ARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998765 789999874 333333322211100000111111122222
Q ss_pred -hCCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEcC
Q 017740 113 -CKDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHA---APNCKVLVVAN 166 (366)
Q Consensus 113 -l~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~tN 166 (366)
+...|++|..+|...... .+ ....+..|+.....+.+.+..+. ..++.+++++.
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 77 RFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 236799999988642111 11 23345667666655665554331 12355566554
No 137
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.40 E-value=0.0016 Score=63.11 Aligned_cols=97 Identities=24% Similarity=0.353 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
.++|+||||+|++|+.++..|... +. .++++++++. +++.....++.+. .+ .++.+++.++|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv------~~lilv~R~~--~rl~~La~el~~~------~i---~~l~~~l~~aD 217 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGV------AELLLVARQQ--ERLQELQAELGGG------KI---LSLEEALPEAD 217 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCC------CEEEEEcCCH--HHHHHHHHHhccc------cH---HhHHHHHccCC
Confidence 468999999899999999999753 32 1789998863 3444333333211 11 24678999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchH
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 171 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~ 171 (366)
+|+.+++.+...-.+..++ . +...++=++.|=|+-
T Consensus 218 iVv~~ts~~~~~~I~~~~l------------------~-~~~~viDiAvPRDVd 252 (340)
T PRK14982 218 IVVWVASMPKGVEIDPETL------------------K-KPCLMIDGGYPKNLD 252 (340)
T ss_pred EEEECCcCCcCCcCCHHHh------------------C-CCeEEEEecCCCCCC
Confidence 9999988875321222111 1 446666688887763
No 138
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.40 E-value=0.00088 Score=61.82 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC---ccceEEeCCHhhh---
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL---LKGVVATTDVVEA--- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~---~~~v~~t~~l~~a--- 112 (366)
.++++||||+|++|++++..|++.+. ++++.++++ +.......++.+..... ..++.-...+.++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-------AVAIADLNQ--DGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999998765 788888875 22333333332211000 0011101111122
Q ss_pred ----hCCCcEEEEecCCCCCC---C---CChhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEc
Q 017740 113 ----CKDVNIAVMVGGFPRKE---G---MERKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 113 ----l~~aDiVIi~aG~~~~~---g---~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~t 165 (366)
....|++|.++|..... . ....+.+..|... .+.+.+.+.+.. ....+++++
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~s 143 (262)
T PRK13394 78 VAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMG 143 (262)
T ss_pred HHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEc
Confidence 23479999999864211 1 1123345566665 455566552322 334555554
No 139
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.39 E-value=0.0026 Score=63.65 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC--------------CccceE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP--------------LLKGVV 104 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~--------------~~~~v~ 104 (366)
.+||+|+| .|.+|..++..|+..+. ++..+|+++ ++++. +.....+ ....+.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-------~V~~~D~~~--~~v~~----l~~g~~~~~e~~l~~~l~~~~~~g~l~ 68 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-------QVIGVDINQ--HAVDT----INRGEIHIVEPDLDMVVKTAVEGGYLR 68 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-------EEEEEeCCH--HHHHH----HHCCCCCcCCCCHHHHHHHHhhcCcee
Confidence 36999999 79999999999998665 899999975 33332 1111100 011233
Q ss_pred EeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchHHH
Q 017740 105 ATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTNAL 173 (366)
Q Consensus 105 ~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~t~ 173 (366)
.+++ +++||+|+++...|..... ..++..+....+.+..+.+++..||. .|-|....-.
T Consensus 69 ~~~~----~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~ 128 (415)
T PRK11064 69 ATTT----PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQ 128 (415)
T ss_pred eecc----cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHH
Confidence 3333 3589999999877753321 23355566666777777655555444 5567765433
No 140
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.39 E-value=0.0016 Score=62.54 Aligned_cols=124 Identities=23% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhhhh
Q 017740 35 IPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEAC 113 (366)
Q Consensus 35 m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~al 113 (366)
|+.+++||+|+| +|.+|..++..|.+.+. ++.++++++ .+.+......+...... ....+...++. ++.
T Consensus 1 ~~~~~m~I~IiG-~GaiG~~lA~~L~~~g~-------~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 70 (313)
T PRK06249 1 MDSETPRIGIIG-TGAIGGFYGAMLARAGF-------DVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDM 70 (313)
T ss_pred CCCcCcEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcch-hhc
Confidence 445568999999 59999999999987654 788888864 22211111011000000 00123333343 357
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCcee
Q 017740 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT 188 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki~ 188 (366)
..+|+||++.-... ..+..+.+....+++..++...|=++.--.+ .++ +|+.++.
T Consensus 71 ~~~D~vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l-~~~---~~~~~v~ 125 (313)
T PRK06249 71 PPCDWVLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQL-REI---LPAEHLL 125 (313)
T ss_pred CCCCEEEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHHH-HHH---CCCCcEE
Confidence 78999999832211 1233344444444677777788877654333 333 5666643
No 141
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.38 E-value=0.0018 Score=60.57 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC----CccceEEeCCHh---
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP----LLKGVVATTDVV--- 110 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~----~~~~v~~t~~l~--- 110 (366)
.++.++||||+|.||..+|..|++.+. +++|+.+++ ++|.....++.+.... ..-++.-..+..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-------~liLvaR~~--~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-------NLILVARRE--DKLEALAKELEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCcH--HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHH
Confidence 456899999999999999999999776 899999975 6788888888654310 001111111111
Q ss_pred hhh----CCCcEEEEecCCCCCCC------CChhHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEcCC
Q 017740 111 EAC----KDVNIAVMVGGFPRKEG------MERKDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 111 ~al----~~aDiVIi~aG~~~~~g------~~r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+.+ -..|+.|-.||...... .+..+.+.-|+-.. +.+...+.+.. .+-||+++.-
T Consensus 76 ~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~--~G~IiNI~S~ 144 (265)
T COG0300 76 DELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG--AGHIINIGSA 144 (265)
T ss_pred HHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEech
Confidence 112 25789999998743221 23455677776544 55555665543 3556776643
No 142
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.37 E-value=0.0011 Score=62.93 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=64.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhh----hCCCc
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA----CKDVN 117 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~a----l~~aD 117 (366)
|+||||+|++|++++..|+..+.. ++.++|.......+. .+... .....+.....+... +.+.|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~------~v~~~~~~~~~~~~~----~~~~~--~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT------DILVVDNLRDGHKFL----NLADL--VIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc------eEEEEecCCCchhhh----hhhhe--eeeccCcchhHHHHHHhhccCCCC
Confidence 689999999999999999876531 577777643211111 11100 000111111122221 24799
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+||++|+.+.....+.......|+.....+.+.+.+.. . .++.+|
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~--~~v~~S 113 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKG-I--PFIYAS 113 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhC-C--cEEEEc
Confidence 99999986432223445567789999999999888764 2 445444
No 143
>PRK06194 hypothetical protein; Provisional
Probab=97.36 E-value=0.00081 Score=63.24 Aligned_cols=103 Identities=19% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhhhC-
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEACK- 114 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~al~- 114 (366)
+++|+||||+|+||++++..|++.+. +++++|++. +.+.....++...... ...++.-..++.++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-------KLVLADVQQ--DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-------EEEEEeCCh--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 36899999999999999999998765 789999864 3334333333221100 0011111112222333
Q ss_pred ------CCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHH
Q 017740 115 ------DVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA 150 (366)
Q Consensus 115 ------~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~ 150 (366)
..|+||..||..... ..+. ...+..|+.....+.+.
T Consensus 77 ~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~ 124 (287)
T PRK06194 77 ALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRA 124 (287)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHH
Confidence 469999999874321 1122 22355666554444443
No 144
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.35 E-value=0.0017 Score=59.92 Aligned_cols=120 Identities=22% Similarity=0.248 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhh----
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVE---- 111 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~---- 111 (366)
.++|+|+||+|++|+.++..|+..+. +|++.++++ +.+......+.+.... ...++.-..+..+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-------EVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 47999999999999999999998665 788999874 3333333333221000 0001111111112
Q ss_pred ---hhCCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcCC
Q 017740 112 ---ACKDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANP 167 (366)
Q Consensus 112 ---al~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tNP 167 (366)
.+...|++|..+|...... .+ ....+..|+.....+.+.+.++. .....+++++..
T Consensus 81 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 2335799999998643211 11 13345577665555555555442 123466666543
No 145
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.35 E-value=0.00027 Score=64.04 Aligned_cols=166 Identities=14% Similarity=0.217 Sum_probs=89.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC--cEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV--NIA 119 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a--DiV 119 (366)
|+|+||+|++|++++..|+..+. +++.+......+ . .......... ...++.-..++.+.+++. |.|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-------~v~~~~~~~~~~-~--~~~~~~~~~~-~~~dl~~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-------EVIVLSRSSNSE-S--FEEKKLNVEF-VIGDLTDKEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-------EEEEEESCSTGG-H--HHHHHTTEEE-EESETTSHHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-------cccccccccccc-c--cccccceEEE-EEeeccccccccccccccCceEE
Confidence 78999999999999999998765 544444433211 1 1111101000 001111122444566666 999
Q ss_pred EEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHH----HHHHCCCCCCCceeecccc
Q 017740 120 VMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALI----LKEFAPSIPAKNITCLTRL 193 (366)
Q Consensus 120 Ii~aG~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~----~~~~~s~~~~~ki~~gt~l 193 (366)
+++++.+.. ...+..+....|+...+.+.+.+.+.. . .+++.++. ..+-... +.+. +.+.+...-+.+-.
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~sS-~~~y~~~~~~~~~e~-~~~~~~~~Y~~~K~ 145 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-V-KRFIFLSS-ASVYGDPDGEPIDED-SPINPLSPYGASKR 145 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-T-SEEEEEEE-GGGGTSSSSSSBETT-SGCCHSSHHHHHHH
T ss_pred EEeecccccccccccccccccccccccccccccccccc-c-cccccccc-ccccccccccccccc-cccccccccccccc
Confidence 999987531 113456778889999999999999985 4 35455443 2211000 0000 00000111112222
Q ss_pred hHHHHHHHHHHHhCCCCCCeeeeEEEccC
Q 017740 194 DHNRAMGQISERLKVHVSDVKNVIIWGNH 222 (366)
Q Consensus 194 ds~R~~~~la~~l~v~~~~v~~~~ViG~h 222 (366)
...++....+++.+++...++...|.|.+
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 146 AAEELLRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccccccccc
Confidence 33344444555668888888877777765
No 146
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.35 E-value=0.0012 Score=61.17 Aligned_cols=119 Identities=19% Similarity=0.141 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhhhh-----
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEAC----- 113 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~al----- 113 (366)
++++|+||+|++|+.++..|++.+. ++.+++++. +.++....++...... ..-++.-..+..+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-------RVGAYDINE--AGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998664 788888764 3333222222100000 000111111222222
Q ss_pred ---CCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcCC
Q 017740 114 ---KDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANP 167 (366)
Q Consensus 114 ---~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tNP 167 (366)
...|++|.++|...... .+ ....+..|+.....+.+.+..+- .+...+++++..
T Consensus 73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 137 (260)
T PRK08267 73 ATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA 137 (260)
T ss_pred HcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 24599999998754221 11 23456667765555555543321 133555655543
No 147
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.35 E-value=0.0017 Score=60.85 Aligned_cols=119 Identities=14% Similarity=0.047 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhh-----
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al----- 113 (366)
+++|+||||+|++|++++..|++.+. ++++++++. +.+................++.-.....+++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH-------RVVGTVRSE--AARADFEALHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC-------EEEEEeCCH--HHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 35899999999999999999988665 788999864 2222111100000000000111111112222
Q ss_pred --CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 114 --KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 114 --~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
...|++|.++|..... ..+. ...+..|+.....+.+.+..+. .....++++|.
T Consensus 75 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS 137 (277)
T PRK06180 75 TFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS 137 (277)
T ss_pred HhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 3579999999874311 1222 2336677766655665543322 12345566553
No 148
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.34 E-value=0.0011 Score=61.11 Aligned_cols=34 Identities=24% Similarity=0.148 Sum_probs=29.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
|+|+|+||+|++|.+++..|+..+. ++.++++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-------~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-------KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH
Confidence 4799999999999999999988664 789999864
No 149
>PRK09135 pteridine reductase; Provisional
Probab=97.34 E-value=0.0018 Score=59.18 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC----ccceEEeCCHhhhh-
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----LKGVVATTDVVEAC- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~----~~~v~~t~~l~~al- 113 (366)
.++|+||||+|++|++++..|++.+. ++.++++... +.+.....++.+..... ..++.-.....+++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~-------~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY-------RVAIHYHRSA-AEADALAAELNALRPGSAAALQADLLDPDALPELVA 77 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH-HHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999998665 7888887532 22332322332211000 01111111122222
Q ss_pred ------CCCcEEEEecCCCCC--CC-C---ChhHHHhhhHHHHHHHHHHHHhh
Q 017740 114 ------KDVNIAVMVGGFPRK--EG-M---ERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 114 ------~~aDiVIi~aG~~~~--~g-~---~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
...|+||.++|.... .. . +..+.+..|+.....+.+.+..+
T Consensus 78 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~ 130 (249)
T PRK09135 78 ACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ 130 (249)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 357999999985321 11 1 22445667777776777766543
No 150
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.002 Score=58.61 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE----eCCHhhh--
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA----TTDVVEA-- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~----t~~l~~a-- 112 (366)
.++|+|+||+|++|++++..|+..+. +++++++++ +.+.....++... .....+.. ..++.+.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~-------~V~~~~r~~--~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY-------KVAITARDQ--KELEEAAAELNNK--GNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEeeCCH--HHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHH
Confidence 46899999999999999999987654 788888864 3333333333211 00011111 1111222
Q ss_pred -----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcCC
Q 017740 113 -----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANP 167 (366)
Q Consensus 113 -----l~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tNP 167 (366)
+...|+||.++|..... ..+. .+.+..|+.....+.+.+.... .....+++++..
T Consensus 75 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 23789999998764321 1222 2345556554444444443321 123455655543
No 151
>PRK05717 oxidoreductase; Validated
Probab=97.33 E-value=0.00081 Score=62.15 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhh-------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------- 111 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~------- 111 (366)
.++++||||+|+||++++..|++.+. +++++|++. +.......++........-++.-..+..+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW-------QVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997654 788898764 22221111111000000011111111111
Q ss_pred hhCCCcEEEEecCCCCCC-----CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcC
Q 017740 112 ACKDVNIAVMVGGFPRKE-----GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVAN 166 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~-----g~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tN 166 (366)
.+...|++|..+|..... ..+. ...+..|+.....+.+.+..+. ...+.+++++.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS 144 (255)
T PRK05717 81 QFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLAS 144 (255)
T ss_pred HhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 123479999999865321 1121 3456677776666666665432 12345566553
No 152
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.31 E-value=0.0015 Score=59.22 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++|+|+||+|++|+.++..|++.+. ++++++++.
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-------~v~~~~r~~ 41 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-------RVALIGRGA 41 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-------eEEEEeCCh
Confidence 457899999999999999999988765 789999864
No 153
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.30 E-value=0.00087 Score=62.25 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++++||||+|.+|++++..|++.+. ++++.+++.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~ 39 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-------RVAVLDKSA 39 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 457999999999999999999998665 788888864
No 154
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.29 E-value=0.0019 Score=58.96 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh
Q 017740 36 PKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA 112 (366)
Q Consensus 36 ~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a 112 (366)
..+.++|+||||+|.+|++++..|++.+. ++++...+.. +.......++...... ...++.-..++.++
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGF-------AVAVNYAGSA-AAADELVAEIEAAGGRAIAVQADVADAAAVTRL 73 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCCH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 34457899999999999999999988665 6666665431 2222222222211100 00011111122233
Q ss_pred h-------CCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 113 C-------KDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 113 l-------~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+ .+.|++|..+|...... .+ ....+..|+.....+.+.+.+....+..+++++
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 74 FDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 3 36899999998643211 11 223355666555555555544332345555554
No 155
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.26 E-value=0.0019 Score=60.37 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhh-------h
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE-------A 112 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~-------a 112 (366)
++++||||+|++|++++..|+..+. ++.+.+++. +.+................++.-...+.+ .
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-------RVAATVRRP--DALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA 73 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999988654 678888753 22221111111000000001110111111 2
Q ss_pred hCCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 113 CKDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 113 l~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
....|+||..+|...... .+ ....+..|......+.+.+..+. .....+++++.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS 135 (276)
T PRK06482 74 LGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS 135 (276)
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 345799999998754221 11 13345577776666666653321 12235555543
No 156
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=97.25 E-value=0.0031 Score=58.16 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhhh
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEAC 113 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~al 113 (366)
.+.++|+|+||+|++|+.++..|+..+. +++++++++ +.+.....++...... ...++.-..++.+++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-------HVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-------eEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 3467999999999999999999987665 799999874 3333333333221100 001111111222222
Q ss_pred -------CCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcCC
Q 017740 114 -------KDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANP 167 (366)
Q Consensus 114 -------~~aDiVIi~aG~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tNP 167 (366)
...|++|..+|..... ..+ ....+..|+.....+.+.+.... .....+++++..
T Consensus 80 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 148 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSI 148 (256)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeec
Confidence 2458999999864321 111 12345566655545554443321 123455666654
No 157
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.24 E-value=0.0025 Score=61.14 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.+||+|+| +|.+|++++..|...+. +|.++|+++. .++.++++++|+
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~-------~V~~~~r~~~-------------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGH-------RVRVWSRRSG-------------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-------EEEEEeCCCC-------------------------CCHHHHHhcCCE
Confidence 47999999 69999999999988765 8999998631 245577889999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhh-cCCCcEEEEEcC
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH-AAPNCKVLVVAN 166 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~-~~~~~~viv~tN 166 (366)
|+++. |. ..++++.+.+..+ .+++..++..++
T Consensus 51 vi~~v--p~--------------~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 51 IVSAV--SM--------------KGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred EEEEC--Ch--------------HHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 99882 21 1244455556543 235666666666
No 158
>PRK05865 hypothetical protein; Provisional
Probab=97.24 E-value=0.0011 Score=71.51 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=67.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+||||+|++|++++..|+..+. +++.++++.. +... ..... ...++.-..++.++++++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-------~Vv~l~R~~~-~~~~------~~v~~-v~gDL~D~~~l~~al~~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-------EVVGIARHRP-DSWP------SSADF-IAADIRDATAVESAMTGADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-------EEEEEECCch-hhcc------cCceE-EEeeCCCHHHHHHHHhCCCEE
Confidence 4899999999999999999988665 7888887531 1110 00000 001222223445678899999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCc
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 168 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv 168 (366)
|++|+.... ....|+.....+.+.+.+.. . .+++.+|.+.
T Consensus 66 VHlAa~~~~-------~~~vNv~GT~nLLeAa~~~g-v-kr~V~iSS~~ 105 (854)
T PRK05865 66 AHCAWVRGR-------NDHINIDGTANVLKAMAETG-T-GRIVFTSSGH 105 (854)
T ss_pred EECCCcccc-------hHHHHHHHHHHHHHHHHHcC-C-CeEEEECCcH
Confidence 999875321 34567777788888877753 2 2556666553
No 159
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.002 Score=60.15 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++++|+||+|++|++++..|++.+. ++.+++++.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-------~V~~~~r~~ 41 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-------AVMIVGRNP 41 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-------eEEEEeCCH
Confidence 357999999999999999999998665 788888764
No 160
>PRK12320 hypothetical protein; Provisional
Probab=97.22 E-value=0.00099 Score=70.45 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+||||+||+|++++..|+..+. +++.+|.... ... + ....+ ...++.-. .+.+++.++|+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-------~Vi~ldr~~~--~~~----~-~~ve~-v~~Dl~d~-~l~~al~~~D~V 64 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-------TVSGIAQHPH--DAL----D-PRVDY-VCASLRNP-VLQELAGEADAV 64 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-------EEEEEeCChh--hcc----c-CCceE-EEccCCCH-HHHHHhcCCCEE
Confidence 4899999999999999999987654 7888886531 100 0 00000 00111111 244667889999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
|++++... . . ....|+....++.+.+++.. . +++.+|
T Consensus 65 IHLAa~~~--~-~---~~~vNv~Gt~nLleAA~~~G-v--RiV~~S 101 (699)
T PRK12320 65 IHLAPVDT--S-A---PGGVGITGLAHVANAAARAG-A--RLLFVS 101 (699)
T ss_pred EEcCccCc--c-c---hhhHHHHHHHHHHHHHHHcC-C--eEEEEE
Confidence 99986521 1 1 12367777888888887764 3 444444
No 161
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.21 E-value=0.0027 Score=57.67 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++|+|+||+|++|..++..|++.+. ++.++++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-------~v~~~~r~~ 39 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-------KVVIYDSNE 39 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCh
Confidence 46899999999999999999987665 788888864
No 162
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.21 E-value=0.0074 Score=60.87 Aligned_cols=66 Identities=23% Similarity=0.357 Sum_probs=47.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+||+|.+|.+++..|...+. ++.++|+++ +.+...+.++ .+..+.+..+++.++|+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-------~V~v~~r~~--~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-------EVIVTGRDP--KKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-------EEEEEECCh--HHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 4899999789999999999987654 789999864 2222111111 123456777889999999
Q ss_pred EEec
Q 017740 120 VMVG 123 (366)
Q Consensus 120 Ii~a 123 (366)
|++.
T Consensus 63 Ilav 66 (437)
T PRK08655 63 IISV 66 (437)
T ss_pred EEec
Confidence 9983
No 163
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.0022 Score=58.82 Aligned_cols=35 Identities=34% Similarity=0.391 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+|++|.+++..|++.+. +++++++++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-------~vi~~~r~~ 40 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA-------SVVVADINA 40 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 46899999999999999999988654 789999864
No 164
>PRK06128 oxidoreductase; Provisional
Probab=97.20 E-value=0.0034 Score=59.73 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHh-----
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVV----- 110 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~----- 110 (366)
.++|+||||+|++|.+++..|++.+. ++++.+++......+.....+...... ...++.-..+..
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-------~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-------DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-------EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 36899999999999999999998664 677766543211222222222211000 000111111111
Q ss_pred --hhhCCCcEEEEecCCCC--CC--CCC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 111 --EACKDVNIAVMVGGFPR--KE--GME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 111 --~al~~aDiVIi~aG~~~--~~--g~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
+.+...|++|..+|... .+ ..+ ....+..|+.....+.+.+..+...+..+++++.
T Consensus 128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 12346799999998642 11 122 2445667777666777777655434456666554
No 165
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.16 E-value=0.0039 Score=57.04 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC---ccceEEeCCHhhhh--
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL---LKGVVATTDVVEAC-- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~---~~~v~~t~~l~~al-- 113 (366)
+++++|+||+|++|+.++..|++.+. ++++++++. +.......++.+..... ..++.-..+..+++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-------KVAVFDLNR--EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999998765 789998864 33333333332211000 00111111111222
Q ss_pred -----CCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 114 -----KDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 114 -----~~aDiVIi~aG~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
...|++|..+|...... .+. ...+..|+.....+.+.+...- .....+++++.
T Consensus 74 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss 139 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS 139 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence 35799999998632211 122 2335566665555555443221 02234555553
No 166
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.0029 Score=58.80 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhh------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~a------ 112 (366)
.++++|+||+|.+|..++..|++.+. ++++.|++. +.+.....++.........++.-..+..++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-------RVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998665 789999864 223322222211000000111111112222
Q ss_pred -hCCCcEEEEecCCCCCC--CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcC
Q 017740 113 -CKDVNIAVMVGGFPRKE--GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVAN 166 (366)
Q Consensus 113 -l~~aDiVIi~aG~~~~~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tN 166 (366)
+...|++|..+|..... ..+. ...+..|+.....+.+.+..+. ++.+.+++++.
T Consensus 77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS 137 (261)
T PRK08265 77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS 137 (261)
T ss_pred HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 23579999999864321 1222 2334456554444444433322 23455565553
No 167
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.16 E-value=0.0024 Score=59.13 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
..++|+||||+|.+|..++..|++.+. ++.+++.+.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~ 49 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-------DIIITTHGT 49 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCc
Confidence 347899999999999999999998665 788888763
No 168
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.15 E-value=0.0026 Score=63.37 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC---ccceEEeCCHhhhhC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL---LKGVVATTDVVEACK 114 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~---~~~v~~t~~l~~al~ 114 (366)
++++|+||||+|.+|++++..|++.+. +++++++++ +.+... ..+..... ..++.-..+..+.+.
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-------~Vi~l~r~~--~~l~~~---~~~~~~~v~~v~~Dvsd~~~v~~~l~ 244 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-------KVVALTSNS--DKITLE---INGEDLPVKTLHWQVGQEAALAELLE 244 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHH---HhhcCCCeEEEEeeCCCHHHHHHHhC
Confidence 356899999999999999999987654 788888764 222211 11110000 001111122344577
Q ss_pred CCcEEEEecCCCCCCCCCh---hHHHhhhHHHHHHHHHH
Q 017740 115 DVNIAVMVGGFPRKEGMER---KDVMSKNVSIYKAQASA 150 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~g~~r---~~~~~~n~~~~~~i~~~ 150 (366)
+.|++|..||.......+. .+.+..|......+.+.
T Consensus 245 ~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a 283 (406)
T PRK07424 245 KVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMEL 283 (406)
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998643322332 34456666555444444
No 169
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.15 E-value=0.0017 Score=61.81 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=61.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-hcC-CccceEEeCCHhhhhC--CC
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AFP-LLKGVVATTDVVEACK--DV 116 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~~~-~~~~v~~t~~l~~al~--~a 116 (366)
||+|+||+|++|+.++..|++.+. +++++|..... ... ....+.+. ... ...++.-..++.++++ +.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-------~V~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-------EVVVLDNLSNG-SPE-ALKRGERITRVTFVEGDLRDRELLDRLFEEHKI 71 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-------eEEEEeCCCcc-chh-hhhhhccccceEEEECCCCCHHHHHHHHHhCCC
Confidence 689999999999999999988654 67777753211 001 11111110 000 0011111122333443 68
Q ss_pred cEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 117 NIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 117 DiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
|+||.++|..... ..+..+.+..|+.....+.+.+.+..
T Consensus 72 d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 112 (328)
T TIGR01179 72 DAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG 112 (328)
T ss_pred cEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC
Confidence 9999999864321 12334556788888888888887764
No 170
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0037 Score=57.21 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC----ccceEEeCCHhhhh--
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL----LKGVVATTDVVEAC-- 113 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~----~~~v~~t~~l~~al-- 113 (366)
++|+||||+|++|..++..|++.+. ++.+.|+++ +.+.....++....... ..++.-..+..+.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-------RLYLAARDV--ERLERLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-------EEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 5899999999999999999998664 788889864 23333333332110000 01111111222222
Q ss_pred --CCCcEEEEecCCCCC---CCCChh---HHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 114 --KDVNIAVMVGGFPRK---EGMERK---DVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 114 --~~aDiVIi~aG~~~~---~g~~r~---~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
+..|++|..+|.... ...+.+ +.+..|......+.+.+..+. .....+++++-
T Consensus 73 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 135 (243)
T PRK07102 73 LPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS 135 (243)
T ss_pred HhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 245999999875321 122322 345566665555555544432 12345555553
No 171
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0033 Score=57.54 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE-eCCH--------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TTDV-------- 109 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~-t~~l-------- 109 (366)
.++|+|+||+|++|++++..|+..+. ++++.++++ +.+.....++.. . ...+.. ..+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-------~v~~~~r~~--~~~~~~~~~~~~-~---~~~~~~D~~~~~~~~~~~~ 72 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA-------RVAITGRDP--ASLEAARAELGE-S---ALVIRADAGDVAAQKALAQ 72 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCCH--HHHHHHHHHhCC-c---eEEEEecCCCHHHHHHHHH
Confidence 36899999999999999999998664 788888763 223222212110 0 000111 0111
Q ss_pred --hhhhCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 110 --VEACKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 110 --~~al~~aDiVIi~aG~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
.+.....|++|..+|...... .+. ...+..|+.....+.+.+..+-.....+++++
T Consensus 73 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~ 136 (249)
T PRK06500 73 ALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG 136 (249)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 122346799999998643211 122 34566777767677777665321223444443
No 172
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0045 Score=56.89 Aligned_cols=119 Identities=15% Similarity=0.138 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEE-eCccchHhhhhHHHHHhhhh--cC-CccceEEeCCHhhhh-
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAA--FP-LLKGVVATTDVVEAC- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~-D~~~~~~~l~~~~~dl~~~~--~~-~~~~v~~t~~l~~al- 113 (366)
+++|+|+||+|++|++++..|++.+. ++.+. +++. +.+.....++.... .. ...++.-..+..+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~-------~v~i~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~ 76 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA-------LVAIHYGRNK--QAADETIREIESNGGKAFLIEADLNSIDGVKKLVE 76 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcCCCH--HHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHH
Confidence 36899999999999999999987654 56554 4432 23332222222110 00 001111111111222
Q ss_pred ------------CCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 114 ------------KDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 114 ------------~~aDiVIi~aG~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.+.|++|.++|...... .+. ...+..|......+.+.+..+......+++++.
T Consensus 77 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 77 QLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred HHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 25899999998743211 111 334456776666666666654322234555543
No 173
>PRK07680 late competence protein ComER; Validated
Probab=97.13 E-value=0.0069 Score=57.02 Aligned_cols=100 Identities=13% Similarity=0.219 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+| +|.+|++++..|.+.+... ..++.++|++. +.++. +.+. . ..+..+.+..++++++|+|
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~---~~~v~v~~r~~--~~~~~----~~~~-~---~g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVK---PSQLTITNRTP--AKAYH----IKER-Y---PGIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCH--HHHHH----HHHH-c---CCeEEECCHHHHHHhCCEE
Confidence 3799999 6999999999998765321 12689999864 22221 2111 0 1244556667778999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 169 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~ 169 (366)
+++. + + ..+.++.+.+..+.+++..++.+++.+.
T Consensus 67 ilav--~--p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICV--K--P------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEec--C--H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 9983 1 1 1123344445444435556777888764
No 174
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.12 E-value=0.0038 Score=57.41 Aligned_cols=36 Identities=28% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++|+|+||+|.+|+.++..|++.+. +++++++++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-------~v~~~~r~~ 41 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-------KVVVADRDA 41 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH
Confidence 457899999999999999999987654 788999864
No 175
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.12 E-value=0.0024 Score=58.24 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhh-------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------- 111 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~------- 111 (366)
.++++|+||+|++|++++..|++.+. .+.+.+.+. +.++....++.........++.-..+..+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~-------~v~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA-------IVGLHGTRV--EKLEALAAELGERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46999999999999999999987654 677777653 33332222221100000001110111111
Q ss_pred hhCCCcEEEEecCCCCCC---CC---ChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcCC
Q 017740 112 ACKDVNIAVMVGGFPRKE---GM---ERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANP 167 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~---g~---~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tNP 167 (366)
.+...|++|..+|..... .. +....+..|+.....+++.+.... .....+++++..
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 140 (245)
T PRK12936 77 DLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV 140 (245)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence 234579999999864321 11 123345566655444444443221 123455666543
No 176
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0055 Score=60.34 Aligned_cols=74 Identities=23% Similarity=0.339 Sum_probs=47.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc-CCccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~-~~~~~v~~t~~l~~al~~aDi 118 (366)
+||+|+|| |+||+..+..|++.+- + +|.+.|+.. +.+.... +..+... ...-++.....+.+.+++.|+
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d-~-----~V~iAdRs~--~~~~~i~-~~~~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGD-G-----EVTIADRSK--EKCARIA-ELIGGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCC-c-----eEEEEeCCH--HHHHHHH-hhccccceeEEecccChHHHHHHHhcCCE
Confidence 69999995 9999999999998653 2 899999974 3333222 1111100 000122223456788999999
Q ss_pred EEEec
Q 017740 119 AVMVG 123 (366)
Q Consensus 119 VIi~a 123 (366)
||.++
T Consensus 72 VIn~~ 76 (389)
T COG1748 72 VINAA 76 (389)
T ss_pred EEEeC
Confidence 99885
No 177
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0031 Score=57.80 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++++|+||+|++|++++..|++.+. ++.+++++.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~ 39 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-------RVVVADRDA 39 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-------eEEEecCCH
Confidence 456899999999999999999998654 788888764
No 178
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.10 E-value=0.003 Score=58.00 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+|+||+|++|++++..|++.+. ++++++++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-------~v~~~~r~~ 38 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-------KVVIADLND 38 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCH
Confidence 36899999999999999999988654 788999874
No 179
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.10 E-value=0.0019 Score=59.73 Aligned_cols=103 Identities=18% Similarity=0.141 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh-hc-CCccceEE-eCCHhhhh-
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA-AF-PLLKGVVA-TTDVVEAC- 113 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~-~~-~~~~~v~~-t~~l~~al- 113 (366)
.++||+|+||+|++|+.++..|++.+. +|+.+.++. +.+... +.+. .. ....++.- ..++.+++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-------~V~~~~R~~--~~~~~~---~~~~~~~~~~~~Dl~d~~~~l~~~~~ 83 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-------AVKAGVRDV--DKAKTS---LPQDPSLQIVRADVTEGSDKLVEAIG 83 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-------EEEEEecCH--HHHHHh---cccCCceEEEEeeCCCCHHHHHHHhh
Confidence 357999999999999999999988654 677666543 221111 1110 00 00011111 12344566
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhh
Q 017740 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
.+.|+||.++|.....+. ......|......+.+.+.+.
T Consensus 84 ~~~d~vi~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~ 122 (251)
T PLN00141 84 DDSDAVICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKA 122 (251)
T ss_pred cCCCEEEECCCCCcCCCC--CCceeeehHHHHHHHHHHHHc
Confidence 689999998876432111 111234554556677777664
No 180
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.0033 Score=59.15 Aligned_cols=116 Identities=19% Similarity=0.106 Sum_probs=70.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc-C---C-ccceEEeCCHhhhhC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-P---L-LKGVVATTDVVEACK 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~-~---~-~~~v~~t~~l~~al~ 114 (366)
++++||||+||||++++..++.... ..+|+.+|.-. -.|....+.+... | + ...+.-...+.+.++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~-----d~~v~~~DkLT----YAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~ 71 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHP-----DDHVVNLDKLT----YAGNLENLADVEDSPRYRFVQGDICDRELVDRLFK 71 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCC-----CceEEEEeccc----ccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHH
Confidence 4799999999999999999887532 12678888532 1222223322211 1 1 112221223334455
Q ss_pred --CCcEEEEecCCC--CCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 115 --DVNIAVMVGGFP--RKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 115 --~aDiVIi~aG~~--~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+.|.|+..|... .+.-....++++.|+-....+.++.+++. ...+++.+|
T Consensus 72 ~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~-~~frf~HIS 125 (340)
T COG1088 72 EYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYW-GKFRFHHIS 125 (340)
T ss_pred hcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhc-ccceEEEec
Confidence 589999887432 22223456788999999999999999996 444544443
No 181
>PRK07060 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.0031 Score=57.56 Aligned_cols=119 Identities=21% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhh---
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC--- 113 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al--- 113 (366)
...++++|+||+|++|++++..|++.+. ++++++++. +.+....... .... ...++.-..++.+++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~-~~~~-~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-------RVVAAARNA--AALDRLAGET-GCEP-LRLDVGDDAAIRAALAAA 75 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHh-CCeE-EEecCCCHHHHHHHHHHh
Confidence 3457999999999999999999988664 788999864 2222111111 0000 000111111222223
Q ss_pred CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcC---CCcEEEEEcC
Q 017740 114 KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAA---PNCKVLVVAN 166 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~~---~~~~viv~tN 166 (366)
...|+||..+|..... ..+. ...+..|......+.+.+.+... ....+++++.
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 76 GAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 3479999999864321 1122 23344666656556655554321 1245566553
No 182
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.08 E-value=0.0013 Score=54.10 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=43.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEE-EEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei-~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
||+|+||+|.+|+.++..|...+.+ ++ .+++.... .+..............++.......+.+.++|+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~------e~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDF------ELVALVSSSRS----AGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTE------EEEEEEESTTT----TTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCc------cEEEeeeeccc----cCCeeehhccccccccceeEeecchhHhhcCCEE
Confidence 7999999999999999999875433 44 56665431 1211111111111123344444345678999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
+++
T Consensus 71 f~a 73 (121)
T PF01118_consen 71 FLA 73 (121)
T ss_dssp EE-
T ss_pred Eec
Confidence 998
No 183
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.0081 Score=57.08 Aligned_cols=80 Identities=21% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh--
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA-- 112 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a-- 112 (366)
..++|+||||+|.+|.+++..|++.+. +|++.+++. +.++....++...... ...++.-..+..+.
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-------~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-------TVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 347899999999999999999988665 789999874 3444333333211000 00011111112222
Q ss_pred -----hCCCcEEEEecCCC
Q 017740 113 -----CKDVNIAVMVGGFP 126 (366)
Q Consensus 113 -----l~~aDiVIi~aG~~ 126 (366)
+.+.|++|..+|..
T Consensus 110 ~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 110 DVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 23689999999864
No 184
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0052 Score=55.25 Aligned_cols=77 Identities=22% Similarity=0.249 Sum_probs=46.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC---CC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---DV 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~---~a 116 (366)
++++|+||+|++|+.++..|++. . ++++++++. +.+.....++.+... ...++.-..++.++++ +.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-------~V~~~~r~~--~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-------TLLLGGRPA--ERLDELAAELPGATP-FPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-------CEEEEeCCH--HHHHHHHHHhccceE-EecCCCCHHHHHHHHHhcCCC
Confidence 58999999999999999999876 3 688888764 222211111111100 0111211223334444 58
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||+++|...
T Consensus 73 d~vi~~ag~~~ 83 (227)
T PRK08219 73 DVLVHNAGVAD 83 (227)
T ss_pred CEEEECCCcCC
Confidence 99999998743
No 185
>PLN02253 xanthoxin dehydrogenase
Probab=97.05 E-value=0.0049 Score=57.74 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+|.||++++..|+..+. +++++|+++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~-------~v~~~~~~~ 52 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA-------KVCIVDLQD 52 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH
Confidence 46899999999999999999998664 789998764
No 186
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.05 E-value=0.004 Score=56.62 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+|+||+|++|+.++..|++.+. ++++.++++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-------~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-------QVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 46899999999999999999987665 788888864
No 187
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=97.05 E-value=0.003 Score=58.22 Aligned_cols=120 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhh---
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVE--- 111 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~--- 111 (366)
..++++||||+|.+|.+++..|++.+. ++++.|+++ +.+.....++.+.... ...++.-..+..+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-------~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-------EIIINDITA--ERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHH
Confidence 346899999999999999999998664 789999864 3334333333321100 0001111111111
Q ss_pred ----hhCCCcEEEEecCCCCC-C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 112 ----ACKDVNIAVMVGGFPRK-E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 112 ----al~~aDiVIi~aG~~~~-~--g~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
.+...|++|..+|.... + ..+. ...+..|......+.+.+..+. .....+++++.
T Consensus 79 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 145 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS 145 (254)
T ss_pred HHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 12347999999986321 1 1122 2345566555444444444332 12355565553
No 188
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.05 E-value=0.0047 Score=57.59 Aligned_cols=116 Identities=18% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCC-------Hhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTD-------VVE 111 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~-------l~~ 111 (366)
.++|+||||+|.+|..++..|++.+. ++.+.++++ +.+.....++..... ...++.-..+ ..+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-------RVAIGDLDE--ALAKETAAELGLVVG-GPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHhccceE-EEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988664 788888864 333332222221100 0001111111 112
Q ss_pred hhCCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEcC
Q 017740 112 ACKDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIY----KAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~tN 166 (366)
...+.|++|..+|...... .+ ....+..|+... +.+.+.+.+. ..+.+++++.
T Consensus 75 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 75 DLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 2346799999998743211 11 123445565433 3344444443 2345666654
No 189
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.04 E-value=0.019 Score=55.36 Aligned_cols=47 Identities=28% Similarity=0.317 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI 93 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~ 93 (366)
....++||||+|.||.+++..|++.+. +++++++++ +.++....++.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-------~Vil~~R~~--~~l~~~~~~l~ 98 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-------NLVLVARNP--DKLKDVSDSIQ 98 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-------CEEEEECCH--HHHHHHHHHHH
Confidence 357899999999999999999998665 789999875 45555554543
No 190
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.004 Score=58.03 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh--
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA-- 112 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a-- 112 (366)
+.++++|+||+|.||+.++..|+..+. ++.+.|++. +.+.....++...... ..-++.-..+..++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-------NVAVASRSQ--EKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 357899999999999999999987654 789999864 2333332233211000 00011111112222
Q ss_pred -----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcCC
Q 017740 113 -----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANP 167 (366)
Q Consensus 113 -----l~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tNP 167 (366)
+...|++|..+|..... ..+. ...+..|......+.+.+..+. +++..+++++.+
T Consensus 79 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~ 145 (264)
T PRK07576 79 QIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAP 145 (264)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECCh
Confidence 23569999998753211 1222 2234466655555555444322 134566666654
No 191
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.03 E-value=0.0059 Score=55.50 Aligned_cols=122 Identities=19% Similarity=0.170 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh-
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA- 112 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a- 112 (366)
.++++|+|+||+|++|++++..|++.+. ++++...+.. +.......++...... ...++.-..++.++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~-------~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA-------NVVINYASSE-AGAEALVAEIGALGGKALAVQGDVSDAESVERAV 74 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCch-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 3457999999999999999999998654 6656555432 1122222222111000 00011101111111
Q ss_pred ------hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcC--CCcEEEEEcC
Q 017740 113 ------CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAA--PNCKVLVVAN 166 (366)
Q Consensus 113 ------l~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~~--~~~~viv~tN 166 (366)
..+.|.||+++|..... ..+. ...+..|+.....+.+.+..+.. ...++++++.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 75 DEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 23679999999864321 1122 22344566666666666655431 2234555553
No 192
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.03 E-value=0.012 Score=53.86 Aligned_cols=120 Identities=22% Similarity=0.202 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc----cceEEe--C----
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL----KGVVAT--T---- 107 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~----~~v~~t--~---- 107 (366)
+.++|+|+||+|++|.+++..|++.+. +++++|++. +.+.....++.+...... ..+... .
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-------TVILLGRTE--EKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 347899999999999999999988654 788999874 333333344433211100 011100 0
Q ss_pred ---CHhhhhCCCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 108 ---DVVEACKDVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 108 ---~l~~al~~aDiVIi~aG~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
.+.+.+...|+||..+|.... + ..+. ...+..|+.....+.+.+..+. .+...+++++.
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss 152 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS 152 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 112233467999999876321 1 1222 3345566655444444443221 13345555554
No 193
>PRK08628 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.0066 Score=56.00 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
...++++||||+|.+|..++..|++.+. ++++.++++
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~-------~v~~~~r~~ 41 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA-------IPVIFGRSA 41 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC-------cEEEEcCCh
Confidence 3456899999999999999999998664 677788764
No 194
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.0042 Score=57.21 Aligned_cols=119 Identities=16% Similarity=0.093 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHh-----
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVV----- 110 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~----- 110 (366)
.++|+|+||+|+||++++..|+..+. ++++.++++ +.++....++...... ...++.-..++.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-------DVVLAARTA--ERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHH
Confidence 46899999999999999999998765 789999864 2333333333211100 001111111111
Q ss_pred --hhhCCCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcC
Q 017740 111 --EACKDVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVAN 166 (366)
Q Consensus 111 --~al~~aDiVIi~aG~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tN 166 (366)
+.+...|++|..+|.... + ..+. ...+..|+.....+.+.+..+- .....+++++.
T Consensus 76 ~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 76 ALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred HHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 122467999999986321 1 1222 3345566665555665554432 11235565554
No 195
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.01 E-value=0.0024 Score=59.79 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=29.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+|+||+|++|++++..|++.+. ++.+.+++.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~-------~V~~~~r~~ 37 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD-------RVVATARDT 37 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEECCH
Confidence 5799999999999999999987654 788888764
No 196
>PRK08643 acetoin reductase; Validated
Probab=97.01 E-value=0.0077 Score=55.49 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=29.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++||||+|++|.+++..|++.+. ++++.|++.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-------~v~~~~r~~ 36 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-------KVAIVDYNE 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 5799999999999999999998664 789999864
No 197
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.00 E-value=0.0054 Score=53.85 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+||||+|.+|+.++...+..++ +++-+-++. .++... +........+.-.+.+.+++++-|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-------eVTAivRn~--~K~~~~-----~~~~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-------EVTAIVRNA--SKLAAR-----QGVTILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-------eeEEEEeCh--Hhcccc-----ccceeecccccChhhhHhhhcCCceE
Confidence 5999999999999999999888766 777777664 233210 11000112222233445789999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
|.+.|.+... ... ...+....+...++... ..+++|+.-
T Consensus 67 IsA~~~~~~~-~~~-----~~~k~~~~li~~l~~ag--v~RllVVGG 105 (211)
T COG2910 67 ISAFGAGASD-NDE-----LHSKSIEALIEALKGAG--VPRLLVVGG 105 (211)
T ss_pred EEeccCCCCC-hhH-----HHHHHHHHHHHHHhhcC--CeeEEEEcC
Confidence 9998776411 111 11222445555555543 345566553
No 198
>PRK06196 oxidoreductase; Provisional
Probab=96.98 E-value=0.0068 Score=58.06 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhh-------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE------- 111 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~------- 111 (366)
.++|+||||+|++|.+++..|++.+. ++++.+++. +.+.....++..... ...++.-..+..+
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-------~Vv~~~R~~--~~~~~~~~~l~~v~~-~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-------HVIVPARRP--DVAREALAGIDGVEV-VMLDLADLESVRAFAERFLD 95 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhhhCeE-EEccCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998665 788888864 333322222221110 0011111111111
Q ss_pred hhCCCcEEEEecCCCCCCC----CChhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEcC
Q 017740 112 ACKDVNIAVMVGGFPRKEG----MERKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~g----~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~tN 166 (366)
...+.|++|..||....+. ......+..|... .+.+.+.+.+. ..+++++++.
T Consensus 96 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 96 SGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred cCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1246899999998642211 1123345556544 34444455443 2356666654
No 199
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.98 E-value=0.0036 Score=58.10 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++++||||+|.||++++..|++.+. +|++.++++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-------RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 346899999999999999999998665 788999864
No 200
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.98 E-value=0.007 Score=64.29 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEE--EEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILH--MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~--L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
.|||+||||+||+|++|+..|...+. ++. ..|+.+ .+. ...++. -.+.
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g~-------~v~~~~~~l~d-~~~---v~~~i~-------------------~~~p 429 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQGI-------AYEYGKGRLED-RSS---LLADIR-------------------NVKP 429 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCCC-------eEEeecccccc-HHH---HHHHHH-------------------hhCC
Confidence 47999999999999999999986543 332 112211 000 000010 0257
Q ss_pred cEEEEecCCCCCC-----CCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 117 NIAVMVGGFPRKE-----GMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 117 DiVIi~aG~~~~~-----g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
|+||++|+....+ ..+..+....|+.....+++.+.+..
T Consensus 430 d~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g 473 (668)
T PLN02260 430 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG 473 (668)
T ss_pred CEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC
Confidence 9999999764321 12445667889999999999998874
No 201
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.0054 Score=56.18 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCC----
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD---- 115 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~---- 115 (366)
.+++||||+|++|..++..|+..+. ++++.++++ +.++.......+.. ...-++.-..+..++++.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~ 71 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-------QVIACGRNQ--SVLDELHTQSANIF-TLAFDVTDHPGTKAALSQLPFI 71 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-------EEEEEECCH--HHHHHHHHhcCCCe-EEEeeCCCHHHHHHHHHhcccC
Confidence 4799999999999999999987665 789999864 33332211111110 000111111222233332
Q ss_pred CcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 116 VNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 116 aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.|.+|+.+|..... ..+. ...+..|......+.+.+..+-.....+++++.
T Consensus 72 ~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 72 PELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred CCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 47778777753211 1222 345677777777777766654223345555543
No 202
>PLN02996 fatty acyl-CoA reductase
Probab=96.98 E-value=0.011 Score=60.51 Aligned_cols=110 Identities=21% Similarity=0.152 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEEEEEeCccch----HhhhhHHHH--Hh----hh---hcC--Cccc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAA----EALNGVKME--LI----DA---AFP--LLKG 102 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~----~~l~~~~~d--l~----~~---~~~--~~~~ 102 (366)
.+.|.||||+||+|++++..|++. .-. .+|.++.+.... +++.....+ +. +. ... ...+
T Consensus 11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v-----~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~k 85 (491)
T PLN02996 11 NKTILVTGATGFLAKIFVEKILRVQPNV-----KKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEK 85 (491)
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhhCCCC-----CEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcC
Confidence 468999999999999999998863 211 266665554321 111101000 00 00 000 0011
Q ss_pred eEE-eCC-------------HhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhh
Q 017740 103 VVA-TTD-------------VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 103 v~~-t~~-------------l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
+.. ..| ..+.++++|+||++|+...- ..+..+....|+.....+.+.+.+.
T Consensus 86 v~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 86 VTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF-DERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred EEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC-cCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 111 23456789999999976432 2345567788999999999888774
No 203
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.011 Score=54.87 Aligned_cols=120 Identities=20% Similarity=0.231 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-cC-CccceEEeCCHhh----
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FP-LLKGVVATTDVVE---- 111 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~~-~~~~v~~t~~l~~---- 111 (366)
+.++++||||+|++|..++..|+..+. +++++++++ +.+.....++.... .. ...++.-..+..+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-------RLLLVGRNA--EKLEALAARLPYPGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 456899999999999999999988665 789999864 33332222221100 00 0001100001111
Q ss_pred --hhCCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 112 --ACKDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 112 --al~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
.+...|++|.++|...... .+ ....+..|+.....+.+.+..+. .+...+++++.
T Consensus 75 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS 139 (263)
T PRK09072 75 AREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS 139 (263)
T ss_pred HHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 1346799999998743211 11 13345566665555555554332 12245555554
No 204
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0039 Score=57.69 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=29.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+||||+|.+|..++..|++.+. ++++.|++.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-------~v~~~~r~~ 36 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-------TLGLVARRT 36 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 5899999999999999999998654 789999864
No 205
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.96 E-value=0.0055 Score=55.97 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh---
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA--- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a--- 112 (366)
.++++|+||+|.+|++++..|++.+. +++++++++ +.+.....++...... ...++.-..++.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-------TVAFNDGLA--AEARELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 47899999999999999999988654 788888764 3333333333221100 00011111111111
Q ss_pred ----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 113 ----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 113 ----l~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
..+.|++|.++|..... ..+. ...+..|......+.+.+..+. ...+.+++++.
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 78 AAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 24689999999864321 1122 2234456655555555544332 12346565554
No 206
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.96 E-value=0.021 Score=52.73 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhh----
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVE---- 111 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~---- 111 (366)
.++++|+||+|++|++++..|+..+. ++++.+++. +.++....++...... ..-++.-..++.+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-------~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-------RVVLSARKA--EELEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999988654 788888864 2333222222211000 0001111111111
Q ss_pred ---hhCCCcEEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhh-c--CCCcEEEEEcC
Q 017740 112 ---ACKDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKH-A--APNCKVLVVAN 166 (366)
Q Consensus 112 ---al~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~-~--~~~~~viv~tN 166 (366)
.....|.+|+++|...... .+ ....+..|+.....+.+.+..+ . ++...+++++.
T Consensus 83 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 83 TLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 1235799999998632211 11 2334567777777777766544 1 12345565554
No 207
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.95 E-value=0.0049 Score=56.51 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=28.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 35 IPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 35 m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
|+.+.++|+||||+|++|++++..|++.+. ++++.+.
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~-------~vv~~~~ 37 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGA-------RVVVNYH 37 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-------eEEEEcC
Confidence 333456899999999999999999987654 6666554
No 208
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.95 E-value=0.0042 Score=56.87 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++|+||||+|.||++++..|++.+. ++++.++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~vi~~~r~~ 39 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-------DIVGAGRSE 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCch
Confidence 347899999999999999999998665 788888753
No 209
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.95 E-value=0.0044 Score=59.55 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++|+||||+|+||.+++..|+..+. +|++.+++.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-------~V~~~~r~~ 40 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-------HVIMACRNL 40 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-------EEEEEECCH
Confidence 46899999999999999999988664 788888764
No 210
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.93 E-value=0.0053 Score=57.28 Aligned_cols=95 Identities=19% Similarity=0.335 Sum_probs=59.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC-CCcEEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK-DVNIAV 120 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~-~aDiVI 120 (366)
|+|+||+|+||++|+..|...+. ++.++-++.. ....++ +. ++..-..+.+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-------~v~iltR~~~-----~~~~~~-~~------~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-------QVTILTRRPP-----KASQNL-HP------NVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-------eEEEEEcCCc-----chhhhc-Cc------cccccchhhhcccCCCCEEE
Confidence 68999999999999999988765 7777776542 111112 11 1111122223333 799999
Q ss_pred EecCCCCCCC---CC-hhHHHhhhHHHHHHHHHHHHhhc
Q 017740 121 MVGGFPRKEG---ME-RKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 121 i~aG~~~~~g---~~-r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
-.||.|-... .. ...+...-+...+.+.+.+.+..
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~ 100 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASE 100 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 9999874221 11 13344444667788888888765
No 211
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.0062 Score=56.60 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC---ccceEEeCCHhhh--
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL---LKGVVATTDVVEA-- 112 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~---~~~v~~t~~l~~a-- 112 (366)
+.++++|+||+|++|.+++..|+..+. ++++.+++. +.+.....++....... ..++.-..++.++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-------~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-------DVLIAARTE--SQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAG 79 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 357899999999999999999988665 789999864 33333333332110000 0011101111111
Q ss_pred -----hCCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHh----hcCCCcEEEEEcC
Q 017740 113 -----CKDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEK----HAAPNCKVLVVAN 166 (366)
Q Consensus 113 -----l~~aDiVIi~aG~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~----~~~~~~~viv~tN 166 (366)
+...|++|..||..... ..+ ..+.+..|......+.+.+.. .. ....+++++.
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~g~iv~~sS 147 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHS-GGGSVINISS 147 (263)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhc-CCeEEEEEcc
Confidence 23679999999853221 111 233445565555555554433 22 3355566554
No 212
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0043 Score=57.17 Aligned_cols=37 Identities=22% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.+.++++||||+|.+|++++..|+..+. ++++.+++.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-------~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-------TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCh
Confidence 3457899999999999999999988654 788888864
No 213
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.91 E-value=0.0049 Score=51.32 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.+||.||| +|.+|.+|+..|.+.++ +|.-+-... .+ ....+.+.. .... ..++.+.++++|+
T Consensus 10 ~l~I~iIG-aGrVG~~La~aL~~ag~-------~v~~v~srs-~~----sa~~a~~~~----~~~~-~~~~~~~~~~aDl 71 (127)
T PF10727_consen 10 RLKIGIIG-AGRVGTALARALARAGH-------EVVGVYSRS-PA----SAERAAAFI----GAGA-ILDLEEILRDADL 71 (127)
T ss_dssp --EEEEEC-TSCCCCHHHHHHHHTTS-------EEEEESSCH-H-----HHHHHHC------TT------TTGGGCC-SE
T ss_pred ccEEEEEC-CCHHHHHHHHHHHHCCC-------eEEEEEeCC-cc----ccccccccc----cccc-ccccccccccCCE
Confidence 47999999 59999999999988665 565443321 11 111222211 1112 2345678999999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhh--cCCCcEEEEEc--CCcchHHHHH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH--AAPNCKVLVVA--NPANTNALIL 175 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~--~~~~~~viv~t--NPv~~~t~~~ 175 (366)
++++ .|+. .+..+++++..+ ..|+-.|+..| -+++++..+-
T Consensus 72 v~ia--vpDd--------------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~ 116 (127)
T PF10727_consen 72 VFIA--VPDD--------------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPAR 116 (127)
T ss_dssp EEE---S-CC--------------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHH
T ss_pred EEEE--echH--------------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHH
Confidence 9999 2221 155677778776 23444444433 3567776654
No 214
>PRK06701 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.0042 Score=58.92 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh---
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA--- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a--- 112 (366)
.++++|+||+|++|++++..|++.+. ++++++++... .+......+...... ...++.-..++.+.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-------~V~l~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-------DIAIVYLDEHE-DANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCcch-HHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999998664 78888876421 222222222211000 00011111111122
Q ss_pred ----hCCCcEEEEecCCCCC--C--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 113 ----CKDVNIAVMVGGFPRK--E--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 113 ----l~~aDiVIi~aG~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
+...|++|..+|.... . ..+. ...+..|+.....+.+.+..+-.+...+|+++.
T Consensus 118 i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 118 TVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 2357999999986321 1 1222 345667777777777776654223445565554
No 215
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.91 E-value=0.013 Score=53.37 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++++|+||+|++|.+++..|+..+. ++++.+++.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-------~Vi~~~r~~ 41 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-------NVGLLARTE 41 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 46899999999999999999988665 789999864
No 216
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.91 E-value=0.013 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIM 64 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 64 (366)
.+++|+|+||+|++|++++..|++.+.
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 346999999999999999999997654
No 217
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.90 E-value=0.0078 Score=55.53 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++|+||+|++|+.++..|+..+. ++++++++.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~-------~V~~~~r~~ 45 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGA-------RVHVCDVSE 45 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 47999999999999999999998665 788999864
No 218
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.90 E-value=0.0085 Score=54.54 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEE-eCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHML-DIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~-D~~~ 80 (366)
+++|+|+||+|++|+.++..|++.+. ++++. +++.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-------~v~~~~~r~~ 40 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-------KVVIAYDINE 40 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEcCCCH
Confidence 35899999999999999999987654 67766 8764
No 219
>PRK06182 short chain dehydrogenase; Validated
Probab=96.90 E-value=0.0049 Score=57.57 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhh-----
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC----- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al----- 113 (366)
+++|+||||+|++|++++..|++.+. ++++.+++. +.+..... ........++.-..+..+++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~--~~l~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-------TVYGAARRV--DKMEDLAS---LGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHh---CCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 36899999999999999999987654 788888764 23321110 00000001111111222223
Q ss_pred --CCCcEEEEecCCCCCC---CCC---hhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEcC
Q 017740 114 --KDVNIAVMVGGFPRKE---GME---RKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 114 --~~aDiVIi~aG~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.+.|++|..+|..... ..+ ....+..|... .+.+.+.+++.. ...+++++.
T Consensus 71 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS 133 (273)
T PRK06182 71 EEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR--SGRIINISS 133 (273)
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcc
Confidence 2689999999864321 111 23345556544 455555555542 245565553
No 220
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.89 E-value=0.0073 Score=57.99 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=74.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+| +|.+|+.++..|.+.+. .+.++.+++..+.+...-+.+.+... .......+.+..+.+..+|+|
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g~-------~V~~~~R~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAGH-------DVTLLVRSRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCCC-------eEEEEecHHHHHHHHhCCeEEecCCC-ccccccccccChhhcCCCCEE
Confidence 5999999 59999999999998662 56666664311222211111111110 001122233445677799999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCce-eecccc
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL 193 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki-~~gt~l 193 (366)
|++.-..+ ..+..+.+..+.+++.+|+..-|=.+..- .+.+. ++.++| .|.|..
T Consensus 72 iv~vKa~q----------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~---~~~~~il~G~~~~ 126 (307)
T COG1893 72 IVTVKAYQ----------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI---LPKETVLGGVTTH 126 (307)
T ss_pred EEEecccc----------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh---CCcceEEEEEeee
Confidence 99842211 34566777777767777788888888766 55554 566664 554544
No 221
>PRK07069 short chain dehydrogenase; Validated
Probab=96.89 E-value=0.0048 Score=56.47 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=64.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-----ccceEEeCCH------
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-----LKGVVATTDV------ 109 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-----~~~v~~t~~l------ 109 (366)
||+|+||+|++|.+++..|++.+. ++++.+++.. +.+.....++....... ..++.-...+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-------KVFLTDINDA-AGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQ 72 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCcc-hHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHH
Confidence 589999999999999999988664 7888887621 23333333332211000 0011101111
Q ss_pred -hhhhCCCcEEEEecCCCCCCC---CCh---hHHHhhhHH----HHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 110 -VEACKDVNIAVMVGGFPRKEG---MER---KDVMSKNVS----IYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 110 -~~al~~aDiVIi~aG~~~~~g---~~r---~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.+.+...|++|..+|...... .+. ...+..|+. ..+.+.+.+++.. ...+++++.
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~ss 138 (251)
T PRK07069 73 AADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ--PASIVNISS 138 (251)
T ss_pred HHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEecC
Confidence 122346799999998653211 111 234556665 5566777776542 345555553
No 222
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.89 E-value=0.0061 Score=55.63 Aligned_cols=35 Identities=31% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++|+|+||+|++|.+++..|++.+. ++++++++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-------~V~~~~r~~ 40 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-------EVIVVDICG 40 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 46899999999999999999998654 788888864
No 223
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.89 E-value=0.02 Score=52.79 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=29.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+||||+|++|++++..|++.+. +++++|++.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-------~vi~~~r~~ 36 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-------RVAVADINS 36 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEECCH
Confidence 5799999999999999999998665 789999864
No 224
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.0088 Score=55.32 Aligned_cols=115 Identities=24% Similarity=0.216 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE-eC---C---Hhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-TT---D---VVEA 112 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~-t~---~---l~~a 112 (366)
++|+|+||+|++|+.++..|+..+. ++++.++++ +..+....++.... .++.. .. + +.++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-------~Vi~~~r~~--~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-------QLVLAARNE--TRLASLAQELADHG----GEALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4799999999999999999987654 788888864 22332322332211 11111 11 1 1112
Q ss_pred -------hCCCcEEEEecCCCCCCC---C-Ch---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcCC
Q 017740 113 -------CKDVNIAVMVGGFPRKEG---M-ER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVANP 167 (366)
Q Consensus 113 -------l~~aDiVIi~aG~~~~~g---~-~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tNP 167 (366)
+.+.|+||.++|...... . +. ...+..|+.....+.+.+..+. .....+++++..
T Consensus 69 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~ 138 (263)
T PRK06181 69 IEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL 138 (263)
T ss_pred HHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 236799999998643211 1 22 2335666666666656554332 122455555543
No 225
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=96.88 E-value=0.016 Score=55.94 Aligned_cols=109 Identities=18% Similarity=0.140 Sum_probs=63.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHh-hhhHHHHHhhhhcC---Cc-cceEE-eCC------
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEA-LNGVKMELIDAAFP---LL-KGVVA-TTD------ 108 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~-l~~~~~dl~~~~~~---~~-~~v~~-t~~------ 108 (366)
+|+||||+|++|++++..|+..+.. .+|+++.++...+. .+.....+...... .. .++.. ..|
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~-----~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQ-----AKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCC-----CEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 4899999999999999999876421 16777777543211 11111111111000 00 11211 112
Q ss_pred ------HhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 109 ------VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 109 ------l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
..+..+++|+||++++.... ..+..++...|+.....+.+.+.+..
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~ 127 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGR 127 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCC
Confidence 23456789999999876432 13345566788888888888777754
No 226
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.87 E-value=0.0067 Score=56.03 Aligned_cols=35 Identities=26% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+|++|++++..|++.+. +++++|+++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~-------~v~~~~r~~ 42 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA-------RVVLVDRSE 42 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCch
Confidence 46899999999999999999998664 788899863
No 227
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.011 Score=54.34 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh---
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA--- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a--- 112 (366)
.++++||||+|.+|..++..|++.+. ++++.++++ +.++....++.+.... ...++.-..+..++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-------KVVVGARRQ--AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999998665 788888864 3344333333221100 00011111111112
Q ss_pred ----hCCCcEEEEecCCCC--CC--CCCh---hHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEcC
Q 017740 113 ----CKDVNIAVMVGGFPR--KE--GMER---KDVMSKNVSI----YKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 113 ----l~~aDiVIi~aG~~~--~~--g~~r---~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~tN 166 (366)
....|++|..+|... .+ ..+. ...+..|... .+.+.+.+.+. ....+++++.
T Consensus 77 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 77 AVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 235799999998632 11 1222 3345666643 33444444443 2345565554
No 228
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.86 E-value=0.0068 Score=55.06 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=29.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
||++|+||+|.+|++++..|++.+. ++++.+++.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-------~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-------KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 3799999999999999999987654 788888864
No 229
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.84 E-value=0.0069 Score=56.94 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh---
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA--- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a--- 112 (366)
.+.++||||+|++|++++..|++.+. ++++.|++. +.+.....++...... ...++.-..++.+.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-------~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-------RVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 35799999999999999999998765 788999864 3344333333221100 00111111122222
Q ss_pred ----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHH----HHhhcCCCcEEEEEcC
Q 017740 113 ----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASA----LEKHAAPNCKVLVVAN 166 (366)
Q Consensus 113 ----l~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~----i~~~~~~~~~viv~tN 166 (366)
....|++|..+|..... ..+. ...+..|+.....+.+. +.+.. ..+.+++++.
T Consensus 77 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~-~~g~iv~isS 143 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQG-TGGHVVFTAS 143 (275)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCC
Confidence 22469999999864321 1222 23355666544444444 33332 2355566554
No 230
>PRK08278 short chain dehydrogenase; Provisional
Probab=96.84 E-value=0.015 Score=54.36 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.+++++||||+|++|++++..|++.+. ++++++++.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~ 40 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-------NIVIAAKTA 40 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeccc
Confidence 346899999999999999999998664 788888764
No 231
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.84 E-value=0.055 Score=51.13 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh
Q 017740 14 VVLFCVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI 93 (366)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~ 93 (366)
..+.|-+.+=..+....+...-......|+||||++.+|..++..+++.+. .++++|++.. -....+..+.
T Consensus 13 ~~~~~~~~~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-------~~vl~Din~~--~~~etv~~~~ 83 (300)
T KOG1201|consen 13 LTLLLLALLESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-------KLVLWDINKQ--GNEETVKEIR 83 (300)
T ss_pred HHHHHHHHHHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCC-------eEEEEecccc--chHHHHHHHH
Confidence 345555555555555554422223456899999988999999999998654 7899999862 2233333343
Q ss_pred hhh-c-CCc------cceEEe-CCHhhhhCCCcEEEEecCCC-CCC--CCChhH---HHhhh----HHHHHHHHHHHHhh
Q 017740 94 DAA-F-PLL------KGVVAT-TDVVEACKDVNIAVMVGGFP-RKE--GMERKD---VMSKN----VSIYKAQASALEKH 154 (366)
Q Consensus 94 ~~~-~-~~~------~~v~~t-~~l~~al~~aDiVIi~aG~~-~~~--g~~r~~---~~~~n----~~~~~~i~~~i~~~ 154 (366)
+.. . .+. .++..+ ...++...+.|++|--||.. -+. ..++++ .+..| ...++++.+.+.+.
T Consensus 84 ~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~ 163 (300)
T KOG1201|consen 84 KIGEAKAYTCDISDREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN 163 (300)
T ss_pred hcCceeEEEecCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc
Confidence 321 0 000 111111 12334556788999999873 222 223322 12222 35568888998886
Q ss_pred cCCCcEEEEEc
Q 017740 155 AAPNCKVLVVA 165 (366)
Q Consensus 155 ~~~~~~viv~t 165 (366)
+ ++-++.++
T Consensus 164 ~--~GHIV~Ia 172 (300)
T KOG1201|consen 164 N--NGHIVTIA 172 (300)
T ss_pred C--CceEEEeh
Confidence 4 45444444
No 232
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.039 Score=51.37 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC----CccceEEeCCHhhhh-
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP----LLKGVVATTDVVEAC- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~----~~~~v~~t~~l~~al- 113 (366)
.+.++||||+|.||.+++..|++.+. ++.+.|++. +.+.....++...... ...++.-..+..+.+
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-------DVILLSRNE--ENLKKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 45799999999999999999998765 788999864 3344333333221000 001111111122222
Q ss_pred -----CCCcEEEEecCCCCCC---CCCh---hHHHhhhHH----HHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 114 -----KDVNIAVMVGGFPRKE---GMER---KDVMSKNVS----IYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 114 -----~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
...|++|..+|.+... ..+. ...+..|+. ..+.+.+.+.+. ..+.+|+++..
T Consensus 79 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS~ 145 (263)
T PRK08339 79 ELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTSV 145 (263)
T ss_pred HHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCc
Confidence 2479999999865321 1222 223444433 345556666553 23566666543
No 233
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.0091 Score=56.84 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-Cc----cceEEeCCHhhh-
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LL----KGVVATTDVVEA- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~----~~v~~t~~l~~a- 112 (366)
.++|+||||+|+||++++..|++.+. ++++.+++. +.......++...... .. -++.-..+..++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-------~vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-------HVVLAVRNL--DKGKAAAARITAATPGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998664 788888764 2233222233211000 00 011111111111
Q ss_pred ------hCCCcEEEEecCCCCCC-C---CChhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEcC
Q 017740 113 ------CKDVNIAVMVGGFPRKE-G---MERKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 113 ------l~~aDiVIi~aG~~~~~-g---~~r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~tN 166 (366)
....|++|..||....+ . ......+..|... .+.+.+.+.+. ....+++++.
T Consensus 87 ~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 152 (306)
T PRK06197 87 DALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSS 152 (306)
T ss_pred HHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECC
Confidence 23579999999863211 1 1123345566554 45555555543 2356666654
No 234
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.0049 Score=57.11 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.++++||||+|.+|++++..|++.+. ++++.+++.. +.+. .. ..........++.-..+..+.+...|+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~-------~Vi~~~r~~~-~~~~-~~--~~~~~~~~~~D~~~~~~~~~~~~~iDi 82 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA-------KVIGLTHSKI-NNSE-SN--DESPNEWIKWECGKEESLDKQLASLDV 82 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-------EEEEEECCch-hhhh-hh--ccCCCeEEEeeCCCHHHHHHhcCCCCE
Confidence 46899999999999999999988665 7888887641 1111 10 100000000011111223345667999
Q ss_pred EEEecCCCCCCCCC---hhHHHhhhHHHHHHHHHHH
Q 017740 119 AVMVGGFPRKEGME---RKDVMSKNVSIYKAQASAL 151 (366)
Q Consensus 119 VIi~aG~~~~~g~~---r~~~~~~n~~~~~~i~~~i 151 (366)
+|..||.......+ ..+.+..|+.....+.+.+
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 118 (245)
T PRK12367 83 LILNHGINPGGRQDPENINKALEINALSSWRLLELF 118 (245)
T ss_pred EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999874322222 2345566776554444443
No 235
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.82 E-value=0.025 Score=55.34 Aligned_cols=111 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc--------------CCccceEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF--------------PLLKGVVA 105 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~--------------~~~~~v~~ 105 (366)
.+|+|+| -|+||..+|..++..+. ++.-+|+++ .+.+ -++.... ....++..
T Consensus 10 ~~I~ViG-LGYVGLPlA~~fA~~G~-------~ViG~DIn~--~~Vd----~ln~G~~~i~e~~~~~~v~~~v~~g~lra 75 (436)
T COG0677 10 ATIGVIG-LGYVGLPLAAAFASAGF-------KVIGVDINQ--KKVD----KLNRGESYIEEPDLDEVVKEAVESGKLRA 75 (436)
T ss_pred eEEEEEc-cccccHHHHHHHHHcCC-------ceEeEeCCH--HHHH----HHhCCcceeecCcHHHHHHHHHhcCCceE
Confidence 6999999 89999999999988765 688899975 2222 1111110 11356888
Q ss_pred eCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchH
Q 017740 106 TTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTN 171 (366)
Q Consensus 106 t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~ 171 (366)
|+|. +.++.||+++++.=.|.+.. -.+.++.+.+.++.|..+-+++..||+ +|-|..+.
T Consensus 76 Ttd~-~~l~~~dv~iI~VPTPl~~~------~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT 135 (436)
T COG0677 76 TTDP-EELKECDVFIICVPTPLKKY------REPDLSYVESAARSIAPVLKKGDLVILESTTPPGTT 135 (436)
T ss_pred ecCh-hhcccCCEEEEEecCCcCCC------CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH
Confidence 8885 55889999999954444321 234567778888888888755544444 77887654
No 236
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=96.80 E-value=0.0034 Score=59.40 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred EEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC--CCcEEE
Q 017740 43 LVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVNIAV 120 (366)
Q Consensus 43 ~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~--~aDiVI 120 (366)
+||||+||||++++..|+..+. ++++..... . .|+.+ ..++.+.++ +.|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-------~v~~~~~~~-----~---~Dl~~-----------~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-------TNLVLRTHK-----E---LDLTR-----------QADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-------cEEEeeccc-----c---CCCCC-----------HHHHHHHHhccCCCEEE
Confidence 4899999999999999987543 334333211 1 12221 112333333 579999
Q ss_pred EecCCCCC---CCCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 121 MVGGFPRK---EGMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 121 i~aG~~~~---~g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
++|+.... ......+....|......+++.+++..
T Consensus 55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 92 (306)
T PLN02725 55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG 92 (306)
T ss_pred EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC
Confidence 99976321 112345677889999999999998864
No 237
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.80 E-value=0.022 Score=53.81 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=46.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||++|| +|.+|++++..|+..+... +.++..+|++. .++++ ++... . ++..+.+..+++++||+|
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~---~~~v~v~~r~~-~~~~~----~l~~~---~--g~~~~~~~~e~~~~aDvV 69 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVK---GEQITVSNRSN-ETRLQ----ELHQK---Y--GVKGTHNKKELLTDANIL 69 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCC---cceEEEECCCC-HHHHH----HHHHh---c--CceEeCCHHHHHhcCCEE
Confidence 6999999 6999999999998765221 12788898753 12222 22111 0 134456667788999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
|++
T Consensus 70 ila 72 (279)
T PRK07679 70 FLA 72 (279)
T ss_pred EEE
Confidence 998
No 238
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.80 E-value=0.012 Score=54.42 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhhh--
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEAC-- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~al-- 113 (366)
+++++||||+|++|.+++..|++.+. ++++.+... .+.+......+.+.... ...++.-..+..+++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF-------DVAVHYNRS-RDEAEALAAEIRALGRRAVALQADLADEAEVRALVAR 80 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEeCCC-HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999987654 666665532 12222222222111000 000111111222222
Q ss_pred -----CCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhh
Q 017740 114 -----KDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 114 -----~~aDiVIi~aG~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
...|++|..+|..... ..+ ....+..|+.....+.+.+..+
T Consensus 81 ~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 132 (258)
T PRK09134 81 ASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARA 132 (258)
T ss_pred HHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3469999999864321 112 2345667776655566655544
No 239
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.80 E-value=0.0071 Score=56.75 Aligned_cols=112 Identities=9% Similarity=0.116 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhhhh-----
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVEAC----- 113 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~al----- 113 (366)
++|+||||+|.+|.+++..|++.+. ++++.+++. +.+. ++...... ...++.-..+..+++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~-------~Vi~~~r~~--~~~~----~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW-------RVFATCRKE--EDVA----ALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-------EEEEEECCH--HHHH----HHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987654 788888864 2222 12111000 000111111111111
Q ss_pred ---CCCcEEEEecCCCCCCC---CC---hhHHHhhhHHH----HHHHHHHHHhhcCCCcEEEEEcC
Q 017740 114 ---KDVNIAVMVGGFPRKEG---ME---RKDVMSKNVSI----YKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 114 ---~~aDiVIi~aG~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~~~~~~viv~tN 166 (366)
...|++|..+|...... .+ ....+..|+.. .+.+.+.+.+.. .+.+++++.
T Consensus 72 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~--~g~iv~isS 135 (277)
T PRK05993 72 LSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG--QGRIVQCSS 135 (277)
T ss_pred HcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC--CCEEEEECC
Confidence 24699999987643211 12 13345566654 455566665542 345666654
No 240
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.79 E-value=0.0093 Score=56.38 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+| .|.+|..++..|.+.+. +|..+|.++ +.++ ...+. ... ...+++ .+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-------~V~~~d~~~--~~~~-~a~~~--g~~-----~~~~~~-~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-------TVYGVSRRE--STCE-RAIER--GLV-----DEASTD-LSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-------EEEEEECCH--HHHH-HHHHC--CCc-----ccccCC-HhHhcCCCEE
Confidence 4899999 69999999999987654 799999864 2222 11111 100 012233 3578999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
|++
T Consensus 62 ila 64 (279)
T PRK07417 62 ILA 64 (279)
T ss_pred EEc
Confidence 998
No 241
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.79 E-value=0.012 Score=54.42 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL 92 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl 92 (366)
+++++||||+|.+|.+++..|++.+. ++++.++++ +.++....++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-------~vv~~~r~~--~~~~~~~~~~ 51 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-------AVALADLDA--ALAERAAAAI 51 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHH
Confidence 46899999999999999999998765 788999864 3344444344
No 242
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.0089 Score=54.95 Aligned_cols=119 Identities=21% Similarity=0.213 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc-CCccceEEeCCHhhh----
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEA---- 112 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~-~~~~~v~~t~~l~~a---- 112 (366)
..++|+|+||+|.+|++++..|++.+. ++++.+++.. . .....++..... ....++.-..+..+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-------~Vi~~~r~~~--~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-------RVALLDRSED--V-AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCHH--H-HHHHHHhhCCceEEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999998664 7888888642 1 112222211000 000111111111111
Q ss_pred ---hCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 113 ---CKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 113 ---l~~aDiVIi~aG~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
+...|++|..+|...... .+. ...+..|+.....+.+.+..+. .....+++++.
T Consensus 84 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 148 (255)
T PRK06841 84 ISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS 148 (255)
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 235799999998643211 111 2345566665555555554432 12345565553
No 243
>PRK07985 oxidoreductase; Provisional
Probab=96.77 E-value=0.007 Score=57.49 Aligned_cols=120 Identities=16% Similarity=0.114 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCH-------
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDV------- 109 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l------- 109 (366)
++++||||+|.||.+++..|++.+. ++++.+++.+.+.++.....+.+.... ...++.-..+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~-------~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA-------DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-------EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 5899999999999999999998765 777777543222222221111111000 00011100111
Q ss_pred hhhhCCCcEEEEecCCCC--CC--CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 110 VEACKDVNIAVMVGGFPR--KE--GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 110 ~~al~~aDiVIi~aG~~~--~~--g~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.+.+...|++|..+|... .+ ..+. ...+..|+.....+.+.+..+...++.||+++.
T Consensus 123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS 186 (294)
T PRK07985 123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS 186 (294)
T ss_pred HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence 122345799999988632 11 1222 334567776655566555544323456666664
No 244
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.0086 Score=54.64 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++++|+||+|.+|..++..|++.+. +++++++++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~ 40 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-------DLALVARSQ 40 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 45899999999999999999998665 788899864
No 245
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.012 Score=53.98 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+|+||+|++|.+++..|++.+. ++++.+++.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-------~Vi~~~r~~ 42 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-------HVIVSSRKL 42 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 46899999999999999999988654 789999864
No 246
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.019 Score=52.75 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=45.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-c--cceEEeCCHhhhhC-C
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-L--KGVVATTDVVEACK-D 115 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~--~~v~~t~~l~~al~-~ 115 (366)
++|+||||+|.+|+.++..|++.+. ++++.++++ +.+.....+........ . .++.-..++.+++. +
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-------NVIAGVQIA--PQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 4799999999999999999988664 677777753 22221111111110000 0 01111112333444 7
Q ss_pred CcEEEEecCCCC
Q 017740 116 VNIAVMVGGFPR 127 (366)
Q Consensus 116 aDiVIi~aG~~~ 127 (366)
.|++|..+|.+.
T Consensus 74 id~vi~~ag~~~ 85 (257)
T PRK09291 74 VDVLLNNAGIGE 85 (257)
T ss_pred CCEEEECCCcCC
Confidence 999999998754
No 247
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.007 Score=56.28 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++|+||||+|++|++++..|++.+. ++++.+++.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-------~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-------RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCh
Confidence 35899999999999999999988664 788888764
No 248
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.012 Score=54.70 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=29.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+||||+|.+|+.++..|+..+. ++.+.+++.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-------~V~~~~r~~ 34 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-------RLALADVNE 34 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 3799999999999999999988665 788888764
No 249
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.0094 Score=54.92 Aligned_cols=104 Identities=20% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhh----
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVE---- 111 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~---- 111 (366)
.+.++||||+|.+|.+++..|++.+. ++++.+++. +.++....++.+.... ..-++.-..+..+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-------QVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999998765 788998864 3344333333221100 0001111111111
Q ss_pred ---hhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHH
Q 017740 112 ---ACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASAL 151 (366)
Q Consensus 112 ---al~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i 151 (366)
.+...|++|..+|..... ..+. ...+..|+.....+.+.+
T Consensus 80 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 128 (253)
T PRK05867 80 VTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAA 128 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHH
Confidence 234689999999864321 1222 233456665444444443
No 250
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0095 Score=55.09 Aligned_cols=35 Identities=37% Similarity=0.445 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++++|+||+|++|++++..|++.+. +++++++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~-------~Vv~~~r~~ 40 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA-------NLILLDISP 40 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEecCCH
Confidence 46899999999999999999998665 789998864
No 251
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.75 E-value=0.014 Score=54.54 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| +|.+|+.++..|.+.+.. ..++.++|+++ +.++ .+.+.. .+..+.+..+.++++|+|
T Consensus 3 m~I~iIG-~G~mG~~la~~l~~~g~~----~~~v~v~~r~~--~~~~----~~~~~~-----g~~~~~~~~~~~~~advV 66 (267)
T PRK11880 3 KKIGFIG-GGNMASAIIGGLLASGVP----AKDIIVSDPSP--EKRA----ALAEEY-----GVRAATDNQEAAQEADVV 66 (267)
T ss_pred CEEEEEe-chHHHHHHHHHHHhCCCC----cceEEEEcCCH--HHHH----HHHHhc-----CCeecCChHHHHhcCCEE
Confidence 6899999 699999999999876521 12688999864 2222 121110 123345666778899999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
+++
T Consensus 67 il~ 69 (267)
T PRK11880 67 VLA 69 (267)
T ss_pred EEE
Confidence 998
No 252
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.75 E-value=0.0016 Score=61.81 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=53.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+||+|++|+++...|...+. ++..++..+ .|+.+... ..++.+.. +.|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-------~v~~~~r~~---------~dl~d~~~--------~~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-------EVIATSRSD---------LDLTDPEA--------VAKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-------EEEEESTTC---------S-TTSHHH--------HHHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-------EEEEeCchh---------cCCCCHHH--------HHHHHHHh-CCCeE
Confidence 6999999999999999999987554 667675431 12222110 01122222 47899
Q ss_pred EEecCCCCC--CCCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 120 VMVGGFPRK--EGMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 120 Ii~aG~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
|.+|+.... ...+...-...|+.....+++.+.+..
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~ 93 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERG 93 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC
Confidence 999876431 112344556778888889999888764
No 253
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.74 E-value=0.016 Score=53.43 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC---ccceEEeCCHh---
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL---LKGVVATTDVV--- 110 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~---~~~v~~t~~l~--- 110 (366)
...++|+|+||+|.||++++..|++.+. ++++.+++. +.+.....++.+..... ..++.-..+..
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-------~vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~ 79 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-------SVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3457999999999999999999998664 788888764 33333333332211000 00111111111
Q ss_pred ----hhhCCCcEEEEecCCCCC--CCCChhH---HHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 111 ----EACKDVNIAVMVGGFPRK--EGMERKD---VMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 111 ----~al~~aDiVIi~aG~~~~--~g~~r~~---~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
+.+...|++|..+|.... ...+..+ .+..|+.....+.+.+..+- .....+++++.
T Consensus 80 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 146 (255)
T PRK06113 80 DFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS 146 (255)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 223356999999986321 1222222 25566655555555443221 12235555553
No 254
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.74 E-value=0.021 Score=54.02 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| +|.+|++++..|.+.+... +.++.++++++. +++. .+... . ..+..+.+..++++++|+|
T Consensus 2 ~~I~iIG-~G~mG~ala~~L~~~g~~~---~~~V~~~~r~~~-~~~~----~l~~~-~---~~~~~~~~~~e~~~~aDvV 68 (277)
T PRK06928 2 EKIGFIG-YGSMADMIATKLLETEVAT---PEEIILYSSSKN-EHFN----QLYDK-Y---PTVELADNEAEIFTKCDHS 68 (277)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCC---cccEEEEeCCcH-HHHH----HHHHH-c---CCeEEeCCHHHHHhhCCEE
Confidence 5899999 6999999999998765221 127888987541 2222 11111 0 1234456667788999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~ 170 (366)
|++. |. ..+.++.+.+..+.+++..++.+.+-++.
T Consensus 69 ilav--pp--------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 69 FICV--PP--------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred EEec--CH--------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 9883 11 11344555554443344455556565443
No 255
>PRK07904 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.012 Score=54.53 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc----cceEEeCCH---
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL----KGVVATTDV--- 109 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~----~~v~~t~~l--- 109 (366)
++++|+||||+|.+|.+++..|++. +. ++.+.++++.. .++....++........ -++.-..+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~-------~V~~~~r~~~~-~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA-------RVVLAALPDDP-RRDAAVAQMKAAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC-------eEEEEeCCcch-hHHHHHHHHHhcCCCceEEEEecCCChHHHHHH
Confidence 3568999999999999999999875 34 78888886521 13333334432110000 011111111
Q ss_pred -hhhh--CCCcEEEEecCCCCCCCC---Ch---hHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEcC
Q 017740 110 -VEAC--KDVNIAVMVGGFPRKEGM---ER---KDVMSKNVSIY----KAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 110 -~~al--~~aDiVIi~aG~~~~~g~---~r---~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~tN 166 (366)
.+.. .+.|++|..+|....... +. .+.+..|.... +.+.+.+.+.. ...+++++.
T Consensus 79 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~--~~~iv~isS 146 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG--FGQIIAMSS 146 (253)
T ss_pred HHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC--CceEEEEec
Confidence 1111 268999988887532111 11 12356666433 44555555543 345555543
No 256
>PRK08264 short chain dehydrogenase; Validated
Probab=96.74 E-value=0.0078 Score=54.74 Aligned_cols=118 Identities=25% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhh---hC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA---CK 114 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~a---l~ 114 (366)
..++|+|+||+|++|++++..|++.+.. ++.+++++. +.+.. ..........++.-..++.+. +.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~------~V~~~~r~~--~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAA------KVYAAARDP--ESVTD----LGPRVVPLQLDVTDPASVAAAAEAAS 72 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcc------cEEEEecCh--hhhhh----cCCceEEEEecCCCHHHHHHHHHhcC
Confidence 4568999999999999999999876531 578888764 22221 100000000011111122222 33
Q ss_pred CCcEEEEecCCCCCC----CCC---hhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcCC
Q 017740 115 DVNIAVMVGGFPRKE----GME---RKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANP 167 (366)
Q Consensus 115 ~aDiVIi~aG~~~~~----g~~---r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tNP 167 (366)
..|+||..+|.+... ..+ ..+.+..|......+.+.+.... .....++.++..
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 134 (238)
T PRK08264 73 DVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV 134 (238)
T ss_pred CCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence 579999999873211 112 22344556655555555544322 123455655543
No 257
>PRK12742 oxidoreductase; Provisional
Probab=96.73 E-value=0.016 Score=52.63 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhh---hCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA---CKD 115 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~a---l~~ 115 (366)
.++|+|+||+|.||+.++..|++.+. ++++.+.+. .+.++....++. ... ...++.-.....+. ...
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~-------~v~~~~~~~-~~~~~~l~~~~~-~~~-~~~D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA-------NVRFTYAGS-KDAAERLAQETG-ATA-VQTDSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCC-HHHHHHHHHHhC-CeE-EecCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999987654 676665432 122222211211 000 00111100111222 234
Q ss_pred CcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 116 VNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 116 aDiVIi~aG~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
.|++|..+|..... ..+ ....+..|+.....+...+.......+.+++++.
T Consensus 76 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 132 (237)
T PRK12742 76 LDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS 132 (237)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 79999999864321 111 1334555665544444444333223445555443
No 258
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.72 E-value=0.013 Score=59.49 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC---CC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK---DV 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~---~a 116 (366)
.+|+|+| .|.+|++++.+|+..+. +|.+||+++ ++.+.......+ ...++..+.++.+.++ ++
T Consensus 2 ~~IgvIG-LG~MG~~lA~nL~~~G~-------~V~v~dr~~--~~~~~l~~~~~~----~g~~i~~~~s~~e~v~~l~~~ 67 (470)
T PTZ00142 2 SDIGLIG-LAVMGQNLALNIASRGF-------KISVYNRTY--EKTEEFVKKAKE----GNTRVKGYHTLEELVNSLKKP 67 (470)
T ss_pred CEEEEEe-EhHHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHhhhh----cCCcceecCCHHHHHhcCCCC
Confidence 4899999 79999999999998776 899999975 333322111111 0123455667767665 58
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
|+|++..-. -+.+.++.+.+..+..++.++|-.+|-
T Consensus 68 d~Iil~v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 68 RKVILLIKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CEEEEEeCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 988777211 122334444555444456666777763
No 259
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.71 E-value=0.019 Score=52.95 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
..++++||||+|.+|.+++..|++.+. ++++.+.+
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-------~v~~~~~~ 40 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-------KVAVLYNS 40 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCC
Confidence 457899999999999999999988664 67776654
No 260
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.71 E-value=0.016 Score=54.17 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
..++++|+||+|.+|++++..|++.+. +++++|++.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-------~V~~~~r~~ 44 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-------KVAILDRNQ 44 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 346899999999999999999988665 789999864
No 261
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=96.70 E-value=0.012 Score=53.85 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=29.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+|+||+|++|+.++..|++.+. ++++++++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-------~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-------NVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 4799999999999999999987654 789999864
No 262
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=96.67 E-value=0.014 Score=53.34 Aligned_cols=120 Identities=20% Similarity=0.175 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhhh--
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEAC-- 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~al-- 113 (366)
.+.++||||+|.+|++++..|++.+. ++.+.+... .+.++....++.+.... ..-++.-...+.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~-------~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA-------KVVINYNSS-KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEcCCc-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999997654 565544322 12233232333221100 000111111122222
Q ss_pred -----CCCcEEEEecCCCCCCC------CChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcC
Q 017740 114 -----KDVNIAVMVGGFPRKEG------MERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVAN 166 (366)
Q Consensus 114 -----~~aDiVIi~aG~~~~~g------~~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tN 166 (366)
...|+||+++|...... ....+.+..|+.....+.+.+..+. .....+++++.
T Consensus 78 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 78 AVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 34699999998743221 1223455667766555555554432 12345555554
No 263
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.67 E-value=0.022 Score=53.75 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||++|| +|.+|++++..|+..+... ..+|..+|++. +.++ .+.+. . .+..+.+..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~---~~~I~v~~r~~--~~~~----~l~~~-~----g~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVS---PDQIICSDLNV--SNLK----NASDK-Y----GITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCC---CceEEEECCCH--HHHH----HHHHh-c----CcEEeCCcHHHHhhCCEE
Confidence 5899999 6999999999998765422 22789999863 3222 12111 0 123455666778999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
|++
T Consensus 68 iLa 70 (272)
T PRK12491 68 ILS 70 (272)
T ss_pred EEE
Confidence 998
No 264
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.67 E-value=0.039 Score=50.80 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.+||+|+| +|.+|.+++..|+..+... ..++..++++. .++++ ++.+. . ++..+.+..+.++++|+
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~---~~~i~~~~~~~-~~~~~----~~~~~---~--~~~~~~~~~~~~~~~Di 69 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEY---IEEIIVSNRSN-VEKLD----QLQAR---Y--NVSTTTDWKQHVTSVDT 69 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCC---cCeEEEECCCC-HHHHH----HHHHH---c--CcEEeCChHHHHhcCCE
Confidence 47999999 6999999999988654211 11477777532 12222 22111 0 13345677788899999
Q ss_pred EEEe
Q 017740 119 AVMV 122 (366)
Q Consensus 119 VIi~ 122 (366)
|+++
T Consensus 70 Viia 73 (245)
T PRK07634 70 IVLA 73 (245)
T ss_pred EEEe
Confidence 9998
No 265
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.66 E-value=0.014 Score=53.03 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhccc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIM 64 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~ 64 (366)
+++|+|+||+|.+|+.++..|++.+.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999988665
No 266
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.66 E-value=0.014 Score=56.50 Aligned_cols=80 Identities=24% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC---ccceEEeCCHhhh--
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL---LKGVVATTDVVEA-- 112 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~---~~~v~~t~~l~~a-- 112 (366)
..+.|+||||+|.||..++..|++.+. ++++.++++ +.++....++....... ..++.-..+..++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-------~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-------RLVLAARDE--EALQAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 346899999999999999999998765 789999864 44444433443211100 0011111111222
Q ss_pred -----hCCCcEEEEecCCC
Q 017740 113 -----CKDVNIAVMVGGFP 126 (366)
Q Consensus 113 -----l~~aDiVIi~aG~~ 126 (366)
+...|++|..+|..
T Consensus 77 ~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 77 QAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 24579999999864
No 267
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.012 Score=54.27 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+||||+|++|.+++..|++.+. +++++|++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~-------~v~~~~r~~ 41 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA-------TVVVGDIDP 41 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-------EEEEEeCCH
Confidence 46899999999999999999998664 788898864
No 268
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.64 E-value=0.014 Score=55.43 Aligned_cols=119 Identities=21% Similarity=0.178 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc--cceEEeCCHh------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL--KGVVATTDVV------ 110 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~--~~v~~t~~l~------ 110 (366)
.++++||||+|.+|..++..|++.+. ++++.+++. +.++....++........ .++.-..+..
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~--~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-------KLALVDLEE--AELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999988765 789999864 334433333321100000 0111001111
Q ss_pred -hhhCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhc-CCCcEEEEEcC
Q 017740 111 -EACKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHA-APNCKVLVVAN 166 (366)
Q Consensus 111 -~al~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~-~~~~~viv~tN 166 (366)
+.+...|++|..+|..... ..+. ...+..|+.....+.+.+..+. +..+.+++++.
T Consensus 80 ~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS 143 (296)
T PRK05872 80 VERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS 143 (296)
T ss_pred HHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 1224579999999864321 1222 3345566665555555544322 12345555553
No 269
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.64 E-value=0.018 Score=52.83 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=77.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-cCCccceEEe-------CCHhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FPLLKGVVAT-------TDVVE 111 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~~~~~~v~~t-------~~l~~ 111 (366)
+=++||||++.+|.+++..|.+.+. .++|..++. ++|+..+.++.+.. .+..-+++-. ..+.+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-------~vvl~aRR~--drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~ 77 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-------KVVLAARRE--ERLEALADEIGAGAALALALDVTDRAAVEAAIEALPE 77 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-------eEEEEeccH--HHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHH
Confidence 4589999999999999999998776 899999975 67887777775311 1111122211 12334
Q ss_pred hhCCCcEEEEecCCCCCCC------CChhHHHhhhHHHH----HHHHHHHHhhcCCCcEEEEEcCCc
Q 017740 112 ACKDVNIAVMVGGFPRKEG------MERKDVMSKNVSIY----KAQASALEKHAAPNCKVLVVANPA 168 (366)
Q Consensus 112 al~~aDiVIi~aG~~~~~g------~~r~~~~~~n~~~~----~~i~~~i~~~~~~~~~viv~tNPv 168 (366)
.....|++|.-||...... .+....+..|+..+ +.+...+.+.. .+.||+++.-.
T Consensus 78 ~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~--~G~IiN~~SiA 142 (246)
T COG4221 78 EFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK--SGHIINLGSIA 142 (246)
T ss_pred hhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC--CceEEEecccc
Confidence 5667899999998744221 23455677887655 55556666643 45677766433
No 270
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.63 E-value=0.019 Score=47.49 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=46.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEE-EEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 40 CRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei-~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
+||+|+|++|.+|+.++..+.. .++ ++ ..+|.++. + .. ..|+.+........+..+.++.+.++.+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~-------~lv~~v~~~~~-~-~~--g~d~g~~~~~~~~~~~v~~~l~~~~~~~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF-------ELVGAVDRKPS-A-KV--GKDVGELAGIGPLGVPVTDDLEELLEEAD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE-------EEEEEEETTTS-T-TT--TSBCHHHCTSST-SSBEBS-HHHHTTH-S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCc-c-cc--cchhhhhhCcCCcccccchhHHHhcccCC
Confidence 5899999779999999999987 333 55 56676541 1 11 22333322212345667789999999999
Q ss_pred EEEEe
Q 017740 118 IAVMV 122 (366)
Q Consensus 118 iVIi~ 122 (366)
++|-.
T Consensus 70 VvIDf 74 (124)
T PF01113_consen 70 VVIDF 74 (124)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88865
No 271
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=96.63 E-value=0.016 Score=55.31 Aligned_cols=106 Identities=17% Similarity=0.090 Sum_probs=65.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEe-CC--HhhhhC--
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TD--VVEACK-- 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t-~~--l~~al~-- 114 (366)
..|+||||+|+||++.+..|+.++. +++.+|.-.+. .+. ......... .....+... .| ..++|+
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy-------~v~~vDNl~n~-~~~-sl~r~~~l~-~~~~~v~f~~~Dl~D~~~L~kv 72 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGY-------GVVIVDNLNNS-YLE-SLKRVRQLL-GEGKSVFFVEGDLNDAEALEKL 72 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCC-------cEEEEeccccc-chh-HHHHHHHhc-CCCCceEEEEeccCCHHHHHHH
Confidence 5899999999999999999998776 78999975432 111 111111111 111233221 12 123333
Q ss_pred ----CCcEEEEecCCCCCC--CCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 115 ----DVNIAVMVGGFPRKE--GMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 115 ----~aDiVIi~aG~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
.-|-|++.|+..... -+.+..+...|+-..-.+.+.++++.
T Consensus 73 F~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 73 FSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred HhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 347788887653321 13456677788888889999999985
No 272
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.63 E-value=0.0035 Score=58.22 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=34.0
Q ss_pred hccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 29 MWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 29 ~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
|++++.|. .+.++||||+|.+|.+++..|++.+. ++++.|+++
T Consensus 1 ~~~~~~l~--~k~vlItG~s~gIG~~la~~l~~~G~-------~v~~~~~~~ 43 (266)
T PRK06171 1 MQDWLNLQ--GKIIIVTGGSSGIGLAIVKELLANGA-------NVVNADIHG 43 (266)
T ss_pred CcccccCC--CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCc
Confidence 45555553 46899999999999999999988665 788888764
No 273
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.63 E-value=0.011 Score=56.24 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=45.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVI 120 (366)
||+|+| .|.+|+.++..|+..+. +|.++|+++ ++++. +.+. ......+..+++++||+|+
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-------~V~~~dr~~--~~~~~----~~~~------g~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-------QLHVTTIGP--EVADE----LLAA------GAVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHHH----HHHC------CCcccCCHHHHHhcCCEEE
Confidence 589999 69999999999988665 799999874 32221 2111 1122346678899999999
Q ss_pred Ee
Q 017740 121 MV 122 (366)
Q Consensus 121 i~ 122 (366)
++
T Consensus 61 ~~ 62 (291)
T TIGR01505 61 TM 62 (291)
T ss_pred Ee
Confidence 98
No 274
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.031 Score=51.32 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEe-------CC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVAT-------TD 108 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t-------~~ 108 (366)
.+.++||||+|++|.+++..|++.+. ++.+.+... .+.+.....++...... ...++.-. .+
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA-------LVAIHYGNR-KEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSS 75 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------eEEEEcCCC-HHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHH
Confidence 36899999999999999999998664 677765322 12333333333211000 00011000 01
Q ss_pred Hhhhh------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 109 VVEAC------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 109 l~~al------~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
..+.+ ...|++|..||..... ..+. ...+..|+.....+.+.+.......+.+++++.-
T Consensus 76 ~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~ 146 (252)
T PRK12747 76 LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA 146 (252)
T ss_pred HHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCc
Confidence 11111 2589999999863211 1121 3344566655555555444432234566666543
No 275
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.62 E-value=0.0059 Score=56.39 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+|.||..++..|++.+. +++++++++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~-------~vv~~~~~~ 42 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA-------DIVGVGVAE 42 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEecCch
Confidence 46899999999999999999998765 788888753
No 276
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.61 E-value=0.028 Score=52.49 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=46.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEE-eCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHML-DIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~-D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
|||++|| .|.+|++++..|++.+... +.+++.+ |+++ ++.+ .+.+. .+....+..++++++|+
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~---~~~i~v~~~r~~--~~~~----~~~~~------g~~~~~~~~e~~~~aDv 64 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVP---PSRISTADDSNP--ARRD----VFQSL------GVKTAASNTEVVKSSDV 64 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCC---cceEEEEeCCCH--HHHH----HHHHc------CCEEeCChHHHHhcCCE
Confidence 5899999 7999999999998765421 2367888 7653 2222 12211 23445566678899999
Q ss_pred EEEec
Q 017740 119 AVMVG 123 (366)
Q Consensus 119 VIi~a 123 (366)
||++.
T Consensus 65 Vil~v 69 (266)
T PLN02688 65 IILAV 69 (266)
T ss_pred EEEEE
Confidence 99984
No 277
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.61 E-value=0.029 Score=54.11 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcccCCCCCCeEEEEEeCccch-----Hhhh---hHHHHH-hhhh----c------CCccceEEeCC--H
Q 017740 51 IGYALVPMIARGIMLGPDQPVILHMLDIEPAA-----EALN---GVKMEL-IDAA----F------PLLKGVVATTD--V 109 (366)
Q Consensus 51 vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~-----~~l~---~~~~dl-~~~~----~------~~~~~v~~t~~--l 109 (366)
+|+.++..++..++ +++|+|.++.. +.++ ...... .... . ....+++.+++ .
T Consensus 1 MG~giA~~~a~~G~-------~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 73 (314)
T PRK08269 1 MGQGIALAFAFAGH-------DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGA 73 (314)
T ss_pred CcHHHHHHHHhCCC-------eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcch
Confidence 46788888888776 89999998621 0111 111111 1110 0 01246777654 6
Q ss_pred hhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHH
Q 017740 110 VEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKE 177 (366)
Q Consensus 110 ~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~ 177 (366)
.+++++||+||.+. ..+..+.+.+...+.+.++|++ |+.||-+......+.+
T Consensus 74 ~~a~~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~--ilaSntS~~~~~~la~ 125 (314)
T PRK08269 74 ADALADADLVFEAV--------------PEVLDAKREALRWLGRHVDADA--IIASTTSTFLVTDLQR 125 (314)
T ss_pred HHHhccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCc--EEEEccccCCHHHHHh
Confidence 68899999999882 2335556677777989887776 4478877655444444
No 278
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.61 E-value=0.0097 Score=56.16 Aligned_cols=146 Identities=22% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-c----cceEEeCCHh--
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-L----KGVVATTDVV-- 110 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~----~~v~~t~~l~-- 110 (366)
.++-|.|||||+.||.++|+.|+..+. .++|+.... ++++....++.....+. . -+++-..+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-------~l~lvar~~--rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~ 81 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-------KLVLVARRA--RRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKF 81 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-------ceEEeehhh--hhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHH
Confidence 457899999999999999999998765 566666643 34554445554332211 0 0111111111
Q ss_pred -----hhhCCCcEEEEecCCCCCCCC---C---hhHHHhhh----HHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHH
Q 017740 111 -----EACKDVNIAVMVGGFPRKEGM---E---RKDVMSKN----VSIYKAQASALEKHAAPNCKVLVVANPANTNALIL 175 (366)
Q Consensus 111 -----~al~~aDiVIi~aG~~~~~g~---~---r~~~~~~n----~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~ 175 (366)
..+.+.|+.|.-||..+..-. + ....+..| +-..+.....+.+.. ++.|++++...+-++.-.
T Consensus 82 ~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~--~GhIVvisSiaG~~~~P~ 159 (282)
T KOG1205|consen 82 VEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN--DGHIVVISSIAGKMPLPF 159 (282)
T ss_pred HHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC--CCeEEEEeccccccCCCc
Confidence 245588999999998763211 1 12233444 355577777777763 578788877766544332
Q ss_pred HHHCCCCCCCceeecccchHHH
Q 017740 176 KEFAPSIPAKNITCLTRLDHNR 197 (366)
Q Consensus 176 ~~~~s~~~~~ki~~gt~lds~R 197 (366)
. +-|++.|.-.....++.|
T Consensus 160 ~---~~Y~ASK~Al~~f~etLR 178 (282)
T KOG1205|consen 160 R---SIYSASKHALEGFFETLR 178 (282)
T ss_pred c---cccchHHHHHHHHHHHHH
Confidence 1 125666643333455544
No 279
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.61 E-value=0.0085 Score=50.84 Aligned_cols=119 Identities=14% Similarity=0.241 Sum_probs=70.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh--cCCc-c---ceEEeCCHhhhhCC
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA--FPLL-K---GVVATTDVVEACKD 115 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~--~~~~-~---~v~~t~~l~~al~~ 115 (366)
|+|+| +|.+|..++..|.+.+. ++.++++.+ .++. ..-.... .... . ......+..+..+.
T Consensus 1 I~I~G-~GaiG~~~a~~L~~~g~-------~V~l~~r~~---~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (151)
T PF02558_consen 1 ILIIG-AGAIGSLYAARLAQAGH-------DVTLVSRSP---RLEA--IKEQGLTITGPDGDETVQPPIVISAPSADAGP 67 (151)
T ss_dssp EEEES-TSHHHHHHHHHHHHTTC-------EEEEEESHH---HHHH--HHHHCEEEEETTEEEEEEEEEEESSHGHHHST
T ss_pred CEEEC-cCHHHHHHHHHHHHCCC-------ceEEEEccc---cHHh--hhheeEEEEecccceecccccccCcchhccCC
Confidence 78999 59999999999988655 899999863 1221 1111111 1111 1 11112222356789
Q ss_pred CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCce-eecccc
Q 017740 116 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI-TCLTRL 193 (366)
Q Consensus 116 aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki-~~gt~l 193 (366)
.|+|+++.-... ..+..+.++.+.+++..++..-|=++..- .+.+. +++.++ .+.+..
T Consensus 68 ~D~viv~vKa~~----------------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-~l~~~---~~~~~v~~g~~~~ 126 (151)
T PF02558_consen 68 YDLVIVAVKAYQ----------------LEQALQSLKPYLDPNTTIVSLQNGMGNEE-VLAEY---FPRPRVLGGVTTI 126 (151)
T ss_dssp ESEEEE-SSGGG----------------HHHHHHHHCTGEETTEEEEEESSSSSHHH-HHHCH---STGSGEEEEEEEE
T ss_pred CcEEEEEecccc----------------hHHHHHHHhhccCCCcEEEEEeCCCCcHH-HHHHH---cCCCcEEEEEEeE
Confidence 999999832111 23466667788767777788888877663 33343 455674 554543
No 280
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.059 Score=49.75 Aligned_cols=80 Identities=25% Similarity=0.256 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC----CccceEEeCC---Hh
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP----LLKGVVATTD---VV 110 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~----~~~~v~~t~~---l~ 110 (366)
+.++++|+||+|.+|..++..|++.+. ++.+.++++ +.+.....++...... ...++.-..+ ..
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-------HLHLVARDA--DALEALAADLRAAHGVDVAVHALDLSSPEAREQLA 76 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 457899999999999999999988654 788999864 3333333333211000 0001111111 12
Q ss_pred hhhCCCcEEEEecCCC
Q 017740 111 EACKDVNIAVMVGGFP 126 (366)
Q Consensus 111 ~al~~aDiVIi~aG~~ 126 (366)
+.+...|++|..+|..
T Consensus 77 ~~~g~id~lv~~ag~~ 92 (259)
T PRK06125 77 AEAGDIDILVNNAGAI 92 (259)
T ss_pred HHhCCCCEEEECCCCC
Confidence 2345689999999864
No 281
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.0093 Score=55.70 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=29.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++||||+|++|..++..|++.+. +|++.+++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-------~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-------EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 4799999999999999999987664 788888764
No 282
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.59 E-value=0.023 Score=54.41 Aligned_cols=68 Identities=28% Similarity=0.247 Sum_probs=45.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| +|.+|..++..|...+.. .++.++|+++ +.++ ..... . .......+..++++++|+|
T Consensus 7 ~~I~IIG-~G~mG~sla~~l~~~g~~-----~~V~~~dr~~--~~~~-~a~~~---g----~~~~~~~~~~~~~~~aDvV 70 (307)
T PRK07502 7 DRVALIG-IGLIGSSLARAIRRLGLA-----GEIVGADRSA--ETRA-RAREL---G----LGDRVTTSAAEAVKGADLV 70 (307)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC-----cEEEEEECCH--HHHH-HHHhC---C----CCceecCCHHHHhcCCCEE
Confidence 6899999 699999999999875531 1789999874 2222 11111 0 0112234566788999999
Q ss_pred EEec
Q 017740 120 VMVG 123 (366)
Q Consensus 120 Ii~a 123 (366)
|++.
T Consensus 71 iiav 74 (307)
T PRK07502 71 ILCV 74 (307)
T ss_pred EECC
Confidence 9984
No 283
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.051 Score=50.65 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCcc--ceEEe---------CC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLK--GVVAT---------TD 108 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~--~v~~t---------~~ 108 (366)
++++||||+|.+|..++..|++.+. +++++++++ +.++....++......... ....+ ..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-------ELFLTDRDA--DGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 3799999999999999999987654 788888764 3333333333221100000 01111 01
Q ss_pred HhhhhCCCcEEEEecCCCCCCC---CCh---hHHHhhhHHHHHHHHHHHHhhc---CCCcEEEEEcCC
Q 017740 109 VVEACKDVNIAVMVGGFPRKEG---MER---KDVMSKNVSIYKAQASALEKHA---APNCKVLVVANP 167 (366)
Q Consensus 109 l~~al~~aDiVIi~aG~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---~~~~~viv~tNP 167 (366)
..+.....|++|..+|...... .+. ...+..|......+.+.+..+- +..+.+++++..
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~ 139 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA 139 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 1122345799999998643211 222 3345566655555555443221 123556665543
No 284
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.57 E-value=0.014 Score=53.97 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=47.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-c-CCccceEEeCCHhh------
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-F-PLLKGVVATTDVVE------ 111 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~-~~~~~v~~t~~l~~------ 111 (366)
|+++||||+|.+|..++..|++.+. ++.+.++++ +.+.....++.+.. . ....++.-..+..+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-------RVVISSRNE--ENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 4899999999999999999998765 788889864 33443333332211 0 00011111111111
Q ss_pred -hhCCCcEEEEecCCC
Q 017740 112 -ACKDVNIAVMVGGFP 126 (366)
Q Consensus 112 -al~~aDiVIi~aG~~ 126 (366)
.+..-|++|..+|..
T Consensus 72 ~~~g~id~li~naG~~ 87 (259)
T PRK08340 72 ELLGGIDALVWNAGNV 87 (259)
T ss_pred HhcCCCCEEEECCCCC
Confidence 224679999999864
No 285
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.57 E-value=0.02 Score=55.58 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+| .|.||+.++..|...+. +|..+|+... ... + . ...+.++.+++++||
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~-------~V~~~d~~~~--~~~----~---~-------~~~~~~l~ell~~aD 200 (330)
T PRK12480 145 KNMTVAIIG-TGRIGAATAKIYAGFGA-------TITAYDAYPN--KDL----D---F-------LTYKDSVKEAIKDAD 200 (330)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEeCChh--Hhh----h---h-------hhccCCHHHHHhcCC
Confidence 346899999 69999999999976544 8999998641 100 1 0 112456788999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcch
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~ 170 (366)
+|+++. |..+ .+...+. .+.+.. .++++.+|++++=.-+
T Consensus 201 iVil~l--P~t~---------~t~~li~--~~~l~~-mk~gavlIN~aRG~~v 239 (330)
T PRK12480 201 IISLHV--PANK---------ESYHLFD--KAMFDH-VKKGAILVNAARGAVI 239 (330)
T ss_pred EEEEeC--CCcH---------HHHHHHh--HHHHhc-CCCCcEEEEcCCcccc
Confidence 999883 2211 0111121 223333 3578888888875433
No 286
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.56 E-value=0.019 Score=52.83 Aligned_cols=34 Identities=38% Similarity=0.396 Sum_probs=29.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++||||+|++|..++..|++.+. ++++++++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-------~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-------RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 4799999999999999999987654 788899864
No 287
>PRK09186 flagellin modification protein A; Provisional
Probab=96.56 E-value=0.012 Score=54.04 Aligned_cols=35 Identities=40% Similarity=0.443 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+|+||+|.+|.+++..|++.+. ++++.+++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-------~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-------IVIAADIDK 38 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEecCh
Confidence 46899999999999999999988665 788888764
No 288
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.55 E-value=0.02 Score=52.82 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhccc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIM 64 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~ 64 (366)
+.++++|+||+|++|.+++..|+..+.
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999987654
No 289
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.54 E-value=0.03 Score=53.19 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=45.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| .|.+|+.++..|++.+. ++..+|+++ +..+ .+... .+..+.+..++++++|+|
T Consensus 3 ~~IgviG-~G~mG~~~a~~l~~~g~-------~v~~~d~~~--~~~~----~~~~~------g~~~~~~~~e~~~~~d~v 62 (296)
T PRK11559 3 MKVGFIG-LGIMGKPMSKNLLKAGY-------SLVVYDRNP--EAVA----EVIAA------GAETASTAKAVAEQCDVI 62 (296)
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHC------CCeecCCHHHHHhcCCEE
Confidence 5899999 69999999999988654 788999864 2222 11111 123455677888999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
+++
T Consensus 63 i~~ 65 (296)
T PRK11559 63 ITM 65 (296)
T ss_pred EEe
Confidence 998
No 290
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.53 E-value=0.014 Score=53.71 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=29.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+||||+|++|+.++..|++.+. +++++++..
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~-------~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF-------DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecCc
Confidence 5799999999999999999998664 788888753
No 291
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.53 E-value=0.024 Score=50.40 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE-----eCCHhhh
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA-----TTDVVEA 112 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~-----t~~l~~a 112 (366)
+.++++|+||+|.+|+.++..|+..+. ++.+++++. ++++....++.+. . ...+.. ..++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-------~V~l~~R~~--~~~~~l~~~l~~~-~--~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-------RVVLVGRDL--ERAQKAADSLRAR-F--GEGVGAVETSDDAARAAA 94 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHHHhh-c--CCcEEEeeCCCHHHHHHH
Confidence 347999999889999999999987543 788898764 4444333333211 1 111111 1233578
Q ss_pred hCCCcEEEEec
Q 017740 113 CKDVNIAVMVG 123 (366)
Q Consensus 113 l~~aDiVIi~a 123 (366)
++++|+||.+.
T Consensus 95 ~~~~diVi~at 105 (194)
T cd01078 95 IKGADVVFAAG 105 (194)
T ss_pred HhcCCEEEECC
Confidence 89999877764
No 292
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.042 Score=51.31 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=29.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++||||+|++|++++..|+..+. +++++++++
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~-------~V~~~~r~~ 37 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY-------LVIATMRNP 37 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC-------EEEEEeCCH
Confidence 5799999999999999999988664 788888764
No 293
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.021 Score=52.64 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.+.++||||+|.||++++..|++.+. ++++.|+++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~-------~v~~~~r~~ 42 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA-------DVALFDLRT 42 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCc
Confidence 46899999999999999999998665 788888764
No 294
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=96.52 E-value=0.029 Score=59.81 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=34.4
Q ss_pred hhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 28 HMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 28 ~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.|++..+|. .++|+||||+|+||++++..|++.+. +|++.|++.
T Consensus 405 ~~~~~~~l~--gkvvLVTGasggIG~aiA~~La~~Ga-------~Vvi~~r~~ 448 (676)
T TIGR02632 405 RMPKEKTLA--RRVAFVTGGAGGIGRETARRLAAEGA-------HVVLADLNL 448 (676)
T ss_pred cCCCCcCCC--CCEEEEeCCCcHHHHHHHHHHHhCCC-------EEEEEeCCH
Confidence 444444432 46899999999999999999998665 789999864
No 295
>PLN02503 fatty acyl-CoA reductase 2
Probab=96.51 E-value=0.017 Score=60.49 Aligned_cols=110 Identities=23% Similarity=0.160 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcc-cCCCCCCeEEEEEeCccchHhh-hhHHHHHhh-hhc-------C------Cccc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEAL-NGVKMELID-AAF-------P------LLKG 102 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ei~L~D~~~~~~~l-~~~~~dl~~-~~~-------~------~~~~ 102 (366)
.+.|.||||+||+|+.++..|++.. -. .+|.++.+..+.+.. +....++.+ ..+ + ...+
T Consensus 119 ~k~VlVTGaTGFLGk~LlekLLr~~~~v-----~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~K 193 (605)
T PLN02503 119 GKNFLITGATGFLAKVLIEKILRTNPDV-----GKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSK 193 (605)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhCCCC-----cEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCcccccccccc
Confidence 4789999999999999999998632 11 267766654321111 111111110 000 0 0111
Q ss_pred eEE-eC------------CHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhh
Q 017740 103 VVA-TT------------DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 103 v~~-t~------------~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
+.. .. +.....++.|+||++|+... ...+.......|+....++.+.+.+.
T Consensus 194 i~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~ 257 (605)
T PLN02503 194 LVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKC 257 (605)
T ss_pred EEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHc
Confidence 211 11 11223467999999987643 22445667788999999999988775
No 296
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.0071 Score=55.86 Aligned_cols=35 Identities=29% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+|+||+|.+|+.++..|++.+. ++++.++++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA-------RVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC-------EEEEEeCCh
Confidence 46899999999999999999998664 788888764
No 297
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.027 Score=54.59 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL 92 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl 92 (366)
.++|+||||+|.+|..++..|++.+. +++++++++ +.++....++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-------~Vvl~~R~~--~~l~~~~~~l 52 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-------KVVLLARGE--EGLEALAAEI 52 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHHHHHHH
Confidence 46899999999999999999998665 789999864 3444333333
No 298
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.49 E-value=0.014 Score=49.00 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..+++|+| +|.+|+.++..|...+.- +|.+++++. ++++..+..+... .-.+....++.+.+.++|+
T Consensus 12 ~~~vlviG-aGg~ar~v~~~L~~~g~~------~i~i~nRt~--~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 12 GKRVLVIG-AGGAARAVAAALAALGAK------EITIVNRTP--ERAEALAEEFGGV----NIEAIPLEDLEEALQEADI 78 (135)
T ss_dssp TSEEEEES-SSHHHHHHHHHHHHTTSS------EEEEEESSH--HHHHHHHHHHTGC----SEEEEEGGGHCHHHHTESE
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCC------EEEEEECCH--HHHHHHHHHcCcc----ccceeeHHHHHHHHhhCCe
Confidence 47999999 599999999999886652 799999874 4444443333111 1122334567778999999
Q ss_pred EEEecCCCC
Q 017740 119 AVMVGGFPR 127 (366)
Q Consensus 119 VIi~aG~~~ 127 (366)
||.+-+.+.
T Consensus 79 vI~aT~~~~ 87 (135)
T PF01488_consen 79 VINATPSGM 87 (135)
T ss_dssp EEE-SSTTS
T ss_pred EEEecCCCC
Confidence 999865543
No 299
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.48 E-value=0.027 Score=53.76 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=56.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+| .|.+|++++..|.+.+. ++.++|+++ ++++. +....... ..-..++.+.++++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-------~V~~~dr~~--~~~~~----l~~~g~~~---~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-------DCVGYDHDQ--DAVKA----MKEDRTTG---VANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-------EEEEEECCH--HHHHH----HHHcCCcc---cCCHHHHHhhcCCCCEE
Confidence 4899999 69999999999988665 789999874 33322 21111100 00011333456789999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+++. |. - .+.++.+.+....+++..++..+|.
T Consensus 64 i~~v--p~-------------~-~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 64 WVMV--PH-------------G-IVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred EEEc--Cc-------------h-HHHHHHHHHHhhCCCCCEEEECCCC
Confidence 9882 21 1 2334444555554455566666664
No 300
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.48 E-value=0.024 Score=51.87 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=29.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++||||+|.+|.+++..|++.+. ++.+.+++.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-------~v~~~~r~~ 36 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-------DLALCARRT 36 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-------EEEEEeCCH
Confidence 5799999999999999999987654 788888864
No 301
>PRK12827 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.046 Score=49.75 Aligned_cols=107 Identities=23% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc--chHhhhhHHHHHhhhhcC---CccceEEeCCHhhhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP--AAEALNGVKMELIDAAFP---LLKGVVATTDVVEAC 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~--~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~al 113 (366)
+++|+|+||+|++|++++..|++.+. ++++++... +.+.+.....++...... ...++.-..++.+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 78 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA-------DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAAL 78 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 46899999999999999999998654 677776532 112222111122111000 000111011112222
Q ss_pred -------CCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHHHHHHHH
Q 017740 114 -------KDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKAQASALE 152 (366)
Q Consensus 114 -------~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~ 152 (366)
...|.||+.+|..... ..+. ...+..|......+.+.+.
T Consensus 79 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 130 (249)
T PRK12827 79 DAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL 130 (249)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3579999999864421 1122 2345667776666776665
No 302
>PRK09242 tropinone reductase; Provisional
Probab=96.47 E-value=0.014 Score=53.92 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL 92 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl 92 (366)
.++++|+||+|.+|..++..|++.+. ++++.+++. +.+.....++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~l 53 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-------DVLIVARDA--DALAQARDEL 53 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCH--HHHHHHHHHH
Confidence 46899999999999999999998665 788888864 3344333344
No 303
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.44 E-value=0.0055 Score=57.64 Aligned_cols=120 Identities=15% Similarity=0.227 Sum_probs=73.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc----ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccce--EEeCCHhhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARG----IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGV--VATTDVVEAC 113 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~----~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v--~~t~~l~~al 113 (366)
.||++.| +|..|..++..|... ++-..+.+.++.++|... .+.....|+.+...++.+.. ....++.+++
T Consensus 26 ~~iv~~G-AGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G---ll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 26 QRILFLG-AGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG---LLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred cEEEEEC-cCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC---eEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 5999999 599999999988764 432112233789999863 22211112222111111111 2346899999
Q ss_pred C--CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc---hHHHHHHHH
Q 017740 114 K--DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN---TNALILKEF 178 (366)
Q Consensus 114 ~--~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~---~~t~~~~~~ 178 (366)
+ ++|++|=+.+.+.- + .+++.+.|.++| ++.+|.-.+||.. ....-+.+.
T Consensus 102 ~~v~ptvlIG~S~~~g~--------f------t~evv~~Ma~~~-~~PIIFaLSNPt~~~E~~pe~a~~~ 156 (279)
T cd05312 102 KAVKPTVLIGLSGVGGA--------F------TEEVVRAMAKSN-ERPIIFALSNPTSKAECTAEDAYKW 156 (279)
T ss_pred HhcCCCEEEEeCCCCCC--------C------CHHHHHHHHhcC-CCCEEEECCCcCCccccCHHHHHHh
Confidence 9 88988765443321 1 236778888888 7788888999974 444444443
No 304
>PRK08324 short chain dehydrogenase; Validated
Probab=96.44 E-value=0.017 Score=61.51 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+||||+|+||+.++..|++.+. +++++|++.
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga-------~Vvl~~r~~ 456 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA-------CVVLADLDE 456 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC-------EEEEEeCCH
Confidence 36899999999999999999987654 799999875
No 305
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.43 E-value=0.025 Score=52.18 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.+.++|+||+|.||.+++..|++.+. +++++|...
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~-------~vv~~~~~~ 44 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC-------DIVGINIVE 44 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEecCcc
Confidence 46899999999999999999998654 677787654
No 306
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.42 E-value=0.021 Score=52.96 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
..++++||||+|.+|.+++..|+..+. ++++.+.++
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-------~vv~~~~~~ 44 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-------TIVFNDINQ 44 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH
Confidence 446899999999999999999998665 788888764
No 307
>PRK08589 short chain dehydrogenase; Validated
Probab=96.42 E-value=0.018 Score=53.87 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.++++||||+|.+|.+++..|+..+. ++++.+++
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-------~vi~~~r~ 39 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-------YVLAVDIA 39 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCc
Confidence 46899999999999999999998665 78888886
No 308
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.41 E-value=0.017 Score=52.68 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
...+++|+||+|++|+.++..|+..+. +++++|+++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-------~vi~~~r~~ 39 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-------KLALIDLNQ 39 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 346899999999999999999987654 788889864
No 309
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.38 E-value=0.036 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIM 64 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~ 64 (366)
++++|+||+|++|+.++..|++.+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998654
No 310
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.37 E-value=0.024 Score=53.87 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..||+|+| +|.+|++++..|...+.. +|.++|++. +++++.+.++.+.. +. ..+....++.++++++|+
T Consensus 127 ~k~vlIlG-aGGaaraia~aL~~~G~~------~I~I~nR~~--~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLG-AGGAGAAVAHALLTLGVE------RLTIFDVDP--ARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHcCCC------EEEEECCCH--HHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 46899999 599999999999876542 799999975 45565655554321 11 122223455667899999
Q ss_pred EEEe--cCC
Q 017740 119 AVMV--GGF 125 (366)
Q Consensus 119 VIi~--aG~ 125 (366)
||.+ +|.
T Consensus 196 VInaTp~Gm 204 (284)
T PRK12549 196 LVHATPTGM 204 (284)
T ss_pred EEECCcCCC
Confidence 9998 454
No 311
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.027 Score=51.87 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeE-EEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~e-i~L~D~~~ 80 (366)
.++|+|+||+|.+|+.++..|+..+. + +.+++++.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~-------~~V~~~~r~~ 41 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA-------AGLVICGRNA 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-------CeEEEEcCCH
Confidence 46899999999999999999987654 4 88898864
No 312
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.35 E-value=0.014 Score=52.84 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++|+||+|++|++++..|++.+. ++++.+++.
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~-------~v~~~~r~~ 39 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGA-------QVYGVDKQD 39 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCC-------EEEEEeCCc
Confidence 36899999999999999999988654 788888764
No 313
>PRK06398 aldose dehydrogenase; Validated
Probab=96.32 E-value=0.023 Score=52.69 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+|.+|.+++..|++.+. ++++.++++
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~-------~Vi~~~r~~ 40 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS-------NVINFDIKE 40 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------eEEEEeCCc
Confidence 36899999999999999999988664 678888754
No 314
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.32 E-value=0.013 Score=55.19 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=28.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
||+|+||+|++|++++..|++.+. +++...+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~-------~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV-------PFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC-------cEEEEeCCC
Confidence 589999999999999999987654 678887764
No 315
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.02 Score=50.78 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=57.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|+++|+||+|.+|..++..|.+. . ++.+.+++. + ....|+.+... .....+.+...|++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~-------~vi~~~r~~--~---~~~~D~~~~~~--------~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H-------EVITAGRSS--G---DVQVDITDPAS--------IRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C-------cEEEEecCC--C---ceEecCCChHH--------HHHHHHhcCCCCEE
Confidence 37999999999999999999875 2 677777653 1 11123322110 00111223468999
Q ss_pred EEecCCCCCC---CCChh---HHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 120 VMVGGFPRKE---GMERK---DVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 120 Ii~aG~~~~~---g~~r~---~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
|..+|..... ..+.. ..+..|+.....+.+....+-.+...+++++
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 9999864321 12222 2344555544455554444322334455554
No 316
>PRK06924 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.016 Score=53.13 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=29.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+|+||+|.+|++++..|++.+. ++.+.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-------~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-------HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-------EEEEEeCCc
Confidence 4799999999999999999998665 788888764
No 317
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.24 E-value=0.022 Score=52.25 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++|+||+|.+|..++..|++.+. ++++++.++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r~~ 34 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-------AVAVADLNE 34 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 689999999999999999988665 788888763
No 318
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.23 E-value=0.056 Score=51.79 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHH--HhhhhcCCc-cceEEeCCHhhhhCCC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME--LIDAAFPLL-KGVVATTDVVEACKDV 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~d--l~~~~~~~~-~~v~~t~~l~~al~~a 116 (366)
|||+|+| +|.||+.++..|.+.+. ++.++++.. +.++....+ +. ...... ..+.......+.....
T Consensus 3 m~I~IiG-aGaiG~~~a~~L~~~G~-------~V~lv~r~~--~~~~~i~~~~Gl~-i~~~g~~~~~~~~~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILG-AGSLGSLWACRLARAGL-------PVRLILRDR--QRLAAYQQAGGLT-LVEQGQASLYAIPAETADAAEPI 71 (305)
T ss_pred ceEEEEC-CCHHHHHHHHHHHhCCC-------CeEEEEech--HHHHHHhhcCCeE-EeeCCcceeeccCCCCccccccc
Confidence 6999999 59999999999987654 789999853 222211110 10 000000 0111111111234578
Q ss_pred cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHHHHHHHHCCCCCCCceeec
Q 017740 117 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 190 (366)
Q Consensus 117 DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t~~~~~~~s~~~~~ki~~g 190 (366)
|+|+++.-.. ...+..+.+..+..++..++.+-|=++....+. +. ++.+++.++
T Consensus 72 D~viv~vK~~----------------~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~---~~~~~v~~g 125 (305)
T PRK05708 72 HRLLLACKAY----------------DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-AR---VPHARCIFA 125 (305)
T ss_pred CEEEEECCHH----------------hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-Hh---CCCCcEEEE
Confidence 9999883110 123444556666557777888889887765443 33 566665444
No 319
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=96.23 E-value=0.016 Score=52.46 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=63.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhhh-----
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEAC----- 113 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~al----- 113 (366)
|+|+||+|++|+.++..|++.+. ++.+.+++.. +.+.....++.+.... ...++.-..++.+++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-------~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-------KVIITYRSSE-EGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEE 72 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCch-hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57999999999999999988665 7888887542 2222222333221100 001111111222222
Q ss_pred --CCCcEEEEecCCCCCC---C---CChhHHHhhhHHHHHHHHHHHHhhc--CCCcEEEEEcCC
Q 017740 114 --KDVNIAVMVGGFPRKE---G---MERKDVMSKNVSIYKAQASALEKHA--APNCKVLVVANP 167 (366)
Q Consensus 114 --~~aDiVIi~aG~~~~~---g---~~r~~~~~~n~~~~~~i~~~i~~~~--~~~~~viv~tNP 167 (366)
...|+||..+|..... . ......+..|......+.+.+..+. .....+++++..
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 73 ELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 3469999999864321 1 1123455677776666666665542 123355665543
No 320
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.022 Score=53.78 Aligned_cols=95 Identities=19% Similarity=0.321 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC--CCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK--DVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~--~aD 117 (366)
|||+|+|++|++|+.|...|. ++. ++.-.|..+ +|+.+.. .+.+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~-------~v~a~~~~~---------~Ditd~~-----------~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF-------EVIATDRAE---------LDITDPD-----------AVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc-------eEEeccCcc---------ccccChH-----------HHHHHHHhhCCC
Confidence 469999999999999998886 322 555555431 2333221 1233333 459
Q ss_pred EEEEecCCCC--CCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 118 IAVMVGGFPR--KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 118 iVIi~aG~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
+||.+|.... +...+++.-+..|+.....+++.+.+.+ +++|.+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g---a~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVG---ARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC---CeEEEee
Confidence 9999987654 2323445567789999999999999975 4444443
No 321
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=96.22 E-value=0.021 Score=52.24 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.++++|+||+|++|+.++..|++.+. ++++.+.+
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~-------~v~~~~~~ 41 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA-------KVIGFDQA 41 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecc
Confidence 46899999999999999999988665 78888875
No 322
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.22 E-value=0.066 Score=49.77 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEE-EEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei-~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
++||+|.||+|.+|+.++..+.+.+-+ ++ .-+|..+. . . ...|..+........+.++.++.....++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~------~L~aa~~~~~~-~-~--~g~d~ge~~g~~~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL------ELVAAFDRPGS-L-S--LGSDAGELAGLGLLGVPVTDDLLLVKADAD 71 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc------eEEEEEecCCc-c-c--cccchhhhccccccCceeecchhhcccCCC
Confidence 479999999999999999998875421 33 45665431 1 1 112222222112234555666677788888
Q ss_pred EEEE
Q 017740 118 IAVM 121 (366)
Q Consensus 118 iVIi 121 (366)
++|=
T Consensus 72 V~ID 75 (266)
T COG0289 72 VLID 75 (266)
T ss_pred EEEE
Confidence 8763
No 323
>PRK06484 short chain dehydrogenase; Validated
Probab=96.21 E-value=0.022 Score=58.37 Aligned_cols=120 Identities=20% Similarity=0.173 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhh------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEA------ 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~a------ 112 (366)
.+.++||||+|.||.+++..|++.+. ++++.+++. +.++.....+.........++.-..+..+.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-------RLLIIDRDA--EGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998664 789999864 333322222211000000111111111111
Q ss_pred -hCCCcEEEEecCCCC--CC--CCC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 113 -CKDVNIAVMVGGFPR--KE--GME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 113 -l~~aDiVIi~aG~~~--~~--g~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+...|++|..||... .+ ..+ ....+..|+.....+.+.+..+-...+.+++++..
T Consensus 340 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~ 402 (520)
T PRK06484 340 RWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI 402 (520)
T ss_pred HcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence 234799999998742 11 122 23446667766655555544433234566766653
No 324
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.025 Score=50.99 Aligned_cols=102 Identities=23% Similarity=0.154 Sum_probs=57.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC-CccceEEeCCHhh---hhC-
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP-LLKGVVATTDVVE---ACK- 114 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~-~~~~v~~t~~l~~---al~- 114 (366)
++++||||+|.+|++++..|++.+. ++++++++. +.++ ++...... ...++....+..+ .+.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-------~v~~~~r~~--~~~~----~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-------RVIATARDA--AALA----ALQALGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-------EEEEEECCH--HHHH----HHHhccceEEEecCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987654 788898864 2222 11111000 0011111112222 133
Q ss_pred -CCcEEEEecCCCC--C-C--CCCh---hHHHhhhHHHHHHHHHHHHhh
Q 017740 115 -DVNIAVMVGGFPR--K-E--GMER---KDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 115 -~aDiVIi~aG~~~--~-~--g~~r---~~~~~~n~~~~~~i~~~i~~~ 154 (366)
..|++|.++|... . + ..+. ...+..|+.....+.+.+..+
T Consensus 69 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 117 (222)
T PRK06953 69 EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPL 117 (222)
T ss_pred CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 3799999998742 1 1 1122 334667776666666665543
No 325
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.02 Score=51.75 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=29.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+|+||+|.+|+.++..|++.+. +|.++++++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-------~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-------QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-------EEEEEeCCC
Confidence 4799999999999999999998654 789999875
No 326
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.18 E-value=0.055 Score=51.23 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=48.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||++|| .|.+|+.++.+|+..++ +++.||++. ++. ...+... ......+..++.+++|+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-------~v~v~~r~~--~ka---~~~~~~~------Ga~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-------EVTVYNRTP--EKA---AELLAAA------GATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-------EEEEEeCCh--hhh---hHHHHHc------CCcccCCHHHHHHhCCEE
Confidence 4899999 89999999999998776 899999975 221 1222221 123345667999999999
Q ss_pred EEec
Q 017740 120 VMVG 123 (366)
Q Consensus 120 Ii~a 123 (366)
|.+-
T Consensus 62 itmv 65 (286)
T COG2084 62 ITML 65 (286)
T ss_pred EEec
Confidence 9883
No 327
>PRK07023 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.013 Score=53.64 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=29.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++|+||+|++|..++..|++.+. ++.+++++.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~-------~v~~~~r~~ 35 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGI-------AVLGVARSR 35 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCC-------EEEEEecCc
Confidence 5899999999999999999987664 788888764
No 328
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.17 E-value=0.032 Score=55.08 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..+||+|+||.|.+|..++..|...+. ++.++|.++. .+..+++++||
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~-------~V~~~d~~~~-------------------------~~~~~~~~~aD 144 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY-------QVRILEQDDW-------------------------DRAEDILADAG 144 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC-------eEEEeCCCcc-------------------------hhHHHHHhcCC
Confidence 347999999789999999999988664 7999997420 12346678999
Q ss_pred EEEEe
Q 017740 118 IAVMV 122 (366)
Q Consensus 118 iVIi~ 122 (366)
+||++
T Consensus 145 lVila 149 (374)
T PRK11199 145 MVIVS 149 (374)
T ss_pred EEEEe
Confidence 99998
No 329
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.17 E-value=0.031 Score=54.89 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=44.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| .|.+|.+++..|...+. ++.++|.+.+...+. . .. ... ... ..++++.+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-------~v~i~~~~~~~~~~~-~--a~-~~~--~~~--~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-------DVFIIGYDPSAAQLA-R--AL-GFG--VID--ELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-------CeEEEEeCCCHHHHH-H--Hh-cCC--CCc--ccccCHHHHhcCCCEE
Confidence 3799999 69999999999987664 567788765321111 1 11 110 001 2345677889999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
|++
T Consensus 65 ila 67 (359)
T PRK06545 65 VLA 67 (359)
T ss_pred EEe
Confidence 998
No 330
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=96.17 E-value=0.024 Score=51.49 Aligned_cols=34 Identities=24% Similarity=0.123 Sum_probs=29.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++|+||+|++|+.++..|++.+. ++.+.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~-------~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY-------RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-------EEEEEeCCc
Confidence 4899999999999999999987654 788888764
No 331
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.16 E-value=0.035 Score=53.01 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++++||||+|.||.+++..|++.+. ++++.|...
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-------~Vv~~~~~~ 46 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-------TVVVNDVAS 46 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEecCCc
Confidence 457899999999999999999998664 788888753
No 332
>PRK06720 hypothetical protein; Provisional
Probab=96.15 E-value=0.073 Score=46.49 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 34 DIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 34 ~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+|..+.+.+.|+||+|.+|..++..|++.+. ++.+.|+++
T Consensus 11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~-------~V~l~~r~~ 50 (169)
T PRK06720 11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGA-------KVIVTDIDQ 50 (169)
T ss_pred ccccCCCEEEEecCCChHHHHHHHHHHHCCC-------EEEEEECCH
Confidence 4444567899999999999999999987654 789999764
No 333
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.14 E-value=0.025 Score=51.50 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=54.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCC-ccceEEeCCHhhhhCCCcEEE
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~-~~~v~~t~~l~~al~~aDiVI 120 (366)
|+|+||+|.+|+.++..|+..+. +++.+-++.+.+ ....+.+..... ..+..-...+.++++|+|.|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-------~V~~l~R~~~~~----~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-------SVRALVRDPSSD----RAQQLQALGAEVVEADYDDPESLVAALKGVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-------CEEEEESSSHHH----HHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCC-------CcEEEEeccchh----hhhhhhcccceEeecccCCHHHHHHHHcCCceEE
Confidence 79999999999999999998544 677666654322 122232221100 011111235667899999999
Q ss_pred EecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhc
Q 017740 121 MVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHA 155 (366)
Q Consensus 121 i~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~ 155 (366)
++-+... ..+ .+.-..+.+++.+..
T Consensus 70 ~~~~~~~---~~~-------~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 70 SVTPPSH---PSE-------LEQQKNLIDAAKAAG 94 (233)
T ss_dssp EESSCSC---CCH-------HHHHHHHHHHHHHHT
T ss_pred eecCcch---hhh-------hhhhhhHHHhhhccc
Confidence 8855432 111 333455666666654
No 334
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.13 E-value=0.046 Score=52.57 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.++|+|+| +|.+|..++..|...+.. ++.++|++. ++....+..+. ..+....++.+++.++|+
T Consensus 178 ~~~V~ViG-aG~iG~~~a~~L~~~g~~------~V~v~~r~~--~ra~~la~~~g-------~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 178 GKKVLVIG-AGEMGELAAKHLAAKGVA------EITIANRTY--ERAEELAKELG-------GNAVPLDELLELLNEADV 241 (311)
T ss_pred CCEEEEEC-cHHHHHHHHHHHHHcCCC------EEEEEeCCH--HHHHHHHHHcC-------CeEEeHHHHHHHHhcCCE
Confidence 47999999 599999999988764321 789999864 33332322221 112222456788899999
Q ss_pred EEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchH
Q 017740 119 AVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTN 171 (366)
Q Consensus 119 VIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~ 171 (366)
||.+.+.|.. ...+... +......+..++-+++|-|+-
T Consensus 242 Vi~at~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 242 VISATGAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEECCCCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCc
Confidence 9999765541 0111111 222111345667799998864
No 335
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.12 E-value=0.018 Score=54.89 Aligned_cols=63 Identities=19% Similarity=0.436 Sum_probs=46.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| .|.+|..++..|++.+. ++.+||+++ +.++ ++... ....+.+..++++++|+|
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~-------~V~v~d~~~--~~~~----~~~~~------g~~~~~s~~~~~~~aDvV 61 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGH-------QLQVFDVNP--QAVD----ALVDK------GATPAASPAQAAAGAEFV 61 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCC-------eEEEEcCCH--HHHH----HHHHc------CCcccCCHHHHHhcCCEE
Confidence 4899999 69999999999988665 799999874 3222 22211 122345667889999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
+++
T Consensus 62 i~~ 64 (296)
T PRK15461 62 ITM 64 (296)
T ss_pred EEe
Confidence 988
No 336
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.051 Score=50.82 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=28.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.++|+||+|++|++++..|+..+. ++.+.+++.
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~-------~V~~~~r~~ 44 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGF-------PVALGARRV 44 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 5799999999999999999998665 677887753
No 337
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.11 E-value=0.11 Score=47.37 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+++|+|+||+|++|.+++..|++.+. +++++++++
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~-------~V~~~~r~~ 40 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA-------TVILVARHQ 40 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-------EEEEEeCCh
Confidence 36899999999999999999987654 789999875
No 338
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.041 Score=50.59 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=29.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++|+||+|.+|.+++..|++.+. ++++.+++.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-------~Vi~~~r~~ 35 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-------NVVITGRTK 35 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 5799999999999999999988654 788888864
No 339
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.09 E-value=0.049 Score=52.04 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCC---C
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD---V 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~---a 116 (366)
|||+|+| .|.+|++++..|+..+. +|..||+++ ++++ .+.+. ....+.+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-------~v~v~dr~~--~~~~----~~~~~------g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-------EVVGYDVNQ--EAVD----VAGKL------GITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-------EEEEEECCH--HHHH----HHHHC------CCeecCCHHHHHHhCCCC
Confidence 3799999 69999999999988654 788999864 2222 12111 12344556666554 6
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+|+++
T Consensus 61 dvVi~~ 66 (299)
T PRK12490 61 RTIWVM 66 (299)
T ss_pred CEEEEE
Confidence 899887
No 340
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.07 E-value=0.041 Score=50.99 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGA--TGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.+.++|||| ++.||..++..|++.+. ++++.+++.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-------~v~l~~r~~ 43 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-------EVVLTGFGR 43 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-------EEEEecCcc
Confidence 468999998 78999999999998665 788888653
No 341
>PRK06484 short chain dehydrogenase; Validated
Probab=96.07 E-value=0.028 Score=57.67 Aligned_cols=36 Identities=36% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
..+.++||||++.||..++..|++.+. ++.+++++.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-------~V~~~~r~~ 39 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-------QVVVADRNV 39 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 346899999999999999999998664 788898864
No 342
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=96.05 E-value=0.026 Score=50.14 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=77.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhh----hhcCCc-cceEEeCC-Hhh--
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELID----AAFPLL-KGVVATTD-VVE-- 111 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~----~~~~~~-~~v~~t~~-l~~-- 111 (366)
....|+||+..||.+++..|...+. ++...|.+. +.+++.+.+|.. ..|.+. .+-+...+ +++
T Consensus 15 k~~~vtGg~sGIGrAia~~la~~Ga-------rv~v~dl~~--~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~ 85 (256)
T KOG1200|consen 15 KVAAVTGGSSGIGRAIAQLLAKKGA-------RVAVADLDS--AAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEME 85 (256)
T ss_pred ceeEEecCCchHHHHHHHHHHhcCc-------EEEEeecch--hhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHH
Confidence 5788999999999999999998776 788899875 345666777743 223221 11110111 222
Q ss_pred -hhCCCcEEEEecCCCCCC------CCChhHHHhhhHHHHHHH----HHHHHhhcCCCcEEEEEcCCcchHHHHH
Q 017740 112 -ACKDVNIAVMVGGFPRKE------GMERKDVMSKNVSIYKAQ----ASALEKHAAPNCKVLVVANPANTNALIL 175 (366)
Q Consensus 112 -al~~aDiVIi~aG~~~~~------g~~r~~~~~~n~~~~~~i----~~~i~~~~~~~~~viv~tNPv~~~t~~~ 175 (366)
.+---+++|-+||..+.. ....++.+..|+...--. ++.+.........||+++.-+..+...-
T Consensus 86 k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~G 160 (256)
T KOG1200|consen 86 KSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFG 160 (256)
T ss_pred HhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccccc
Confidence 233458999999987643 123466777887666433 3443332213347899988887665443
No 343
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.04 E-value=0.046 Score=49.95 Aligned_cols=32 Identities=28% Similarity=0.176 Sum_probs=26.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
++|+|+||+|++|+.++..|++.+. ++++.+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~-------~v~~~~~ 34 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW-------SVGINYA 34 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC-------EEEEEeC
Confidence 5899999999999999999998654 5666543
No 344
>PRK05855 short chain dehydrogenase; Validated
Probab=96.02 E-value=0.047 Score=56.31 Aligned_cols=119 Identities=18% Similarity=0.069 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh--
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA-- 112 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a-- 112 (366)
..++++||||+|++|++++..|+..+. ++++.+++. +.++....++...... ...++.-.....+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-------EVVASDIDE--AAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAE 384 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999988665 789999864 3334333333221100 00011101111111
Q ss_pred -----hCCCcEEEEecCCCCCC---CCCh---hHHHhhhHHHHHH----HHHHHHhhcCCCcEEEEEcC
Q 017740 113 -----CKDVNIAVMVGGFPRKE---GMER---KDVMSKNVSIYKA----QASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 113 -----l~~aDiVIi~aG~~~~~---g~~r---~~~~~~n~~~~~~----i~~~i~~~~~~~~~viv~tN 166 (366)
....|++|..||..... ..+. ...+..|+..... +...+.+.. ..+.+++++.
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~g~iv~~sS 452 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERG-TGGHIVNVAS 452 (582)
T ss_pred HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCcEEEEECC
Confidence 22479999999875321 1222 2334466544433 344444432 3456666654
No 345
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.046 Score=50.61 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL 92 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl 92 (366)
.+.++||||+|.+|.+++..|++.+. ++++.++++ +.+.....++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~-------~V~~~~r~~--~~~~~~~~~~ 52 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA-------SVAICGRDE--ERLASAEARL 52 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------eEEEEeCCH--HHHHHHHHHH
Confidence 46899999999999999999998665 788999864 3344333333
No 346
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.026 Score=51.90 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+|+||+|+||++++..|++.+. ++++.++++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-------~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-------KVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 47999999999999999999987654 788888864
No 347
>PRK12743 oxidoreductase; Provisional
Probab=96.01 E-value=0.085 Score=48.64 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=27.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
++|+|+||+|.+|++++..|++.+. ++.+.+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~-------~V~~~~~ 34 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF-------DIGITWH 34 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------EEEEEeC
Confidence 5899999999999999999998665 6776654
No 348
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.00 E-value=0.04 Score=55.49 Aligned_cols=119 Identities=24% Similarity=0.256 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhh---h---
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE---A--- 112 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~---a--- 112 (366)
.++++||||+|.+|..++..|++.+. +++++|.....+.+.....++.. .. ..-++.-..+..+ .
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga-------~vi~~~~~~~~~~l~~~~~~~~~-~~-~~~Dv~~~~~~~~~~~~~~~ 280 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGA-------HVVCLDVPAAGEALAAVANRVGG-TA-LALDITAPDAPARIAEHLAE 280 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-------EEEEEeCCccHHHHHHHHHHcCC-eE-EEEeCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988664 78888875432322222221110 00 0001110111111 1
Q ss_pred -hCCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhh--cCCCcEEEEEcC
Q 017740 113 -CKDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKH--AAPNCKVLVVAN 166 (366)
Q Consensus 113 -l~~aDiVIi~aG~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~--~~~~~~viv~tN 166 (366)
....|++|..+|..... ..+ ....+..|+.....+.+.+... ..++..+++++.
T Consensus 281 ~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 281 RHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 22579999999865321 122 2334567777666676666552 123456666653
No 349
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.97 E-value=0.031 Score=52.57 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGAT--GQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
..+.++||||+ +.||..++..|++.+. ++++.++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-------~Vil~~r~~ 41 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-------ELAFTYLNE 41 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEEecCH
Confidence 34689999986 6899999999998665 788888763
No 350
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=95.96 E-value=0.023 Score=53.88 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHH--------hhhhcC-CccceEEeCCH
Q 017740 40 CRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMEL--------IDAAFP-LLKGVVATTDV 109 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl--------~~~~~~-~~~~v~~t~~l 109 (366)
+||+-+| +|++|...+.-++. .+ .+++.++|.+. .+..+.--|- .+.... ...|+..++|.
T Consensus 2 ~kiccig-agyvggptcavia~kcp------~i~vtvvd~s~--~ri~~wnsd~lpiyepgldevv~~crgknlffstdi 72 (481)
T KOG2666|consen 2 VKICCIG-AGYVGGPTCAVIALKCP------DIEVTVVDISV--PRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDI 72 (481)
T ss_pred ceEEEec-CcccCCcchheeeecCC------ceEEEEEecCc--hHhhcccCCCCcccCCCHHHHHHHhcCCceeeecch
Confidence 6999999 59999887655443 22 24899999975 3332211110 000001 14688889999
Q ss_pred hhhhCCCcEEEEecCCCCC
Q 017740 110 VEACKDVNIAVMVGGFPRK 128 (366)
Q Consensus 110 ~~al~~aDiVIi~aG~~~~ 128 (366)
+.+++.||+|++....|.+
T Consensus 73 ekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 73 EKAIKEADLVFISVNTPTK 91 (481)
T ss_pred HHHhhhcceEEEEecCCcc
Confidence 9999999999999877754
No 351
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.041 Score=51.59 Aligned_cols=115 Identities=21% Similarity=0.193 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh----
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA---- 112 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a---- 112 (366)
+.++|||| |.||.+++..|. .+. +|++.|+++ +.++....++.+.... ..-++.-..+..++
T Consensus 3 k~~lItGa-~gIG~~la~~l~-~G~-------~Vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~ 71 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVG-AGK-------KVLLADYNE--ENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA 71 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHh-CCC-------EEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH
Confidence 35777885 899999999986 333 789999864 3333333333221000 00011111111111
Q ss_pred --hCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 113 --CKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 113 --l~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
....|++|..||.... ..+....+..|+.....+.+.+...-.++..+++++.
T Consensus 72 ~~~g~id~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS 126 (275)
T PRK06940 72 QTLGPVTGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS 126 (275)
T ss_pred HhcCCCCEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 2357999999997532 2344556777776666665555444222333344443
No 352
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.94 E-value=0.12 Score=43.95 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=67.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEe----CC--------
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVAT----TD-------- 108 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t----~~-------- 108 (366)
.++||||+|.+|..++..|++.+- ..+.+++++++.+.......++.+.. .++... ++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~------~~v~~~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~~~ 71 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA------RVVILTSRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRALI 71 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT------EEEEEEESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc------eEEEEeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 589999999999999999998632 16788888622233333333333211 111110 11
Q ss_pred --HhhhhCCCcEEEEecCCCCCCCCC------hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc
Q 017740 109 --VVEACKDVNIAVMVGGFPRKEGME------RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN 169 (366)
Q Consensus 109 --l~~al~~aDiVIi~aG~~~~~g~~------r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~ 169 (366)
..+....-|++|..+|........ -...+..|+.....+.+.+.. . +.+.+++++....
T Consensus 72 ~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~-~~g~iv~~sS~~~ 138 (167)
T PF00106_consen 72 EEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-Q-GGGKIVNISSIAG 138 (167)
T ss_dssp HHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-H-TTEEEEEEEEGGG
T ss_pred cccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-c-cccceEEecchhh
Confidence 111234679999999886532211 124455665555555665555 3 4567777775543
No 353
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.92 E-value=0.088 Score=47.34 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 18 CVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 18 ~~~~~~~~~~~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.-+++|.+...+.... ...||+|+| +|.+|+.++..|++.++ + +++|+|.+
T Consensus 4 ~~~~~~~~~~~~q~~L----~~~~V~IvG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D 54 (200)
T TIGR02354 4 RRALVARHTPKIVQKL----EQATVAICG-LGGLGSNVAINLARAGI-G-----KLILVDFD 54 (200)
T ss_pred HHHHHHhcCHHHHHHH----hCCcEEEEC-cCHHHHHHHHHHHHcCC-C-----EEEEECCC
Confidence 3445555554443321 246999999 59999999999998765 2 78999987
No 354
>PRK07577 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.042 Score=49.69 Aligned_cols=35 Identities=34% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++|+|+||+|.+|+.++..|++.+. ++++++++.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~-------~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH-------QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-------EEEEEeCCc
Confidence 36899999999999999999988664 788888764
No 355
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.87 E-value=0.084 Score=48.15 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIM 64 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~ 64 (366)
+.++|+||+|++|+.++..|++.+.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 5789999999999999999988664
No 356
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.84 E-value=0.12 Score=49.44 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=42.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCC---C
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD---V 116 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~---a 116 (366)
|||+|+| .|.+|+.++..|+..+. ++.++|+++ ++.+ .+.+. .+....+..+.++. +
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-------~v~v~dr~~--~~~~----~~~~~------g~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-------EVVGYDRNP--EAVE----ALAEE------GATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-------eEEEEECCH--HHHH----HHHHC------CCeecCCHHHHHhhcCCC
Confidence 4899999 79999999999998664 789999874 3222 12111 12334455555554 6
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+|+++
T Consensus 61 dvvi~~ 66 (301)
T PRK09599 61 RVVWLM 66 (301)
T ss_pred CEEEEE
Confidence 888887
No 357
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.014 Score=53.54 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=29.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
|+++|+| +|.+|+++|..|.+.+. +++++|.++
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~-------~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGH-------NVVLIDRDE 33 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCC-------ceEEEEcCH
Confidence 5899999 59999999999998765 799999875
No 358
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=95.83 E-value=0.084 Score=48.78 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.++++||||+|.+|..++..|+..+. .+++...+
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~-------~vvi~~~~ 40 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA-------KVVINYRS 40 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCC
Confidence 46899999999999999999998664 66666654
No 359
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.83 E-value=0.065 Score=49.65 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=29.3
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGAT--GQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
+.+.++||||+ +.||..++..|++.+. ++++.|+++
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-------~v~l~~r~~ 46 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-------ELAVTYLND 46 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-------EEEEEeCCh
Confidence 34689999987 4899999999998664 788888764
No 360
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.81 E-value=0.058 Score=52.23 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
...+++|+| +|..|.+.+..+....-+ .++.++|++. ++++....++.+. ..++....+..+++++||
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~~~~-----~~v~V~~r~~--~~~~~~~~~~~~~----g~~v~~~~~~~eav~~aD 194 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRVFDL-----EEVSVYCRTP--STREKFALRASDY----EVPVRAATDPREAVEGCD 194 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhh----CCcEEEeCCHHHHhccCC
Confidence 357899999 699999877766543222 2899999975 4444444444321 224566788899999999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+.+-
T Consensus 195 iVitaT 200 (325)
T TIGR02371 195 ILVTTT 200 (325)
T ss_pred EEEEec
Confidence 999873
No 361
>PRK06123 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.076 Score=48.41 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=26.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
+.++||||+|++|++++..|++.+. ++++.+.+
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~-------~vv~~~~~ 35 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY-------AVCLNYLR 35 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-------eEEEecCC
Confidence 4699999999999999999987654 56666643
No 362
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.77 E-value=0.17 Score=44.43 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|.|+| .|.||+.++..|..-+. ++..+|+.... . . ...+. .+ ...++.+.++.||
T Consensus 35 ~g~tvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~---~-~--~~~~~------~~-~~~~l~ell~~aD 93 (178)
T PF02826_consen 35 RGKTVGIIG-YGRIGRAVARRLKAFGM-------RVIGYDRSPKP---E-E--GADEF------GV-EYVSLDELLAQAD 93 (178)
T ss_dssp TTSEEEEES-TSHHHHHHHHHHHHTT--------EEEEEESSCHH---H-H--HHHHT------TE-EESSHHHHHHH-S
T ss_pred CCCEEEEEE-EcCCcCeEeeeeecCCc-------eeEEecccCCh---h-h--hcccc------cc-eeeehhhhcchhh
Confidence 457999999 79999999999986444 89999987521 1 1 11111 12 2457889999999
Q ss_pred EEEEecC-CCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCc
Q 017740 118 IAVMVGG-FPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 168 (366)
Q Consensus 118 iVIi~aG-~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv 168 (366)
+|+++.- .+...+ ++. .+.+.+. ++++.+|++++--
T Consensus 94 iv~~~~plt~~T~~-----li~---------~~~l~~m-k~ga~lvN~aRG~ 130 (178)
T PF02826_consen 94 IVSLHLPLTPETRG-----LIN---------AEFLAKM-KPGAVLVNVARGE 130 (178)
T ss_dssp EEEE-SSSSTTTTT-----SBS---------HHHHHTS-TTTEEEEESSSGG
T ss_pred hhhhhhccccccce-----eee---------eeeeecc-ccceEEEeccchh
Confidence 9999842 222111 111 1223343 4788889988753
No 363
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.76 E-value=0.065 Score=45.45 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
+++|+|+| +|.+|..++..|...+. .++.++|++. +.++....++... . ... ...+..+.++++|+
T Consensus 19 ~~~i~iiG-~G~~g~~~a~~l~~~g~------~~v~v~~r~~--~~~~~~~~~~~~~---~-~~~-~~~~~~~~~~~~Dv 84 (155)
T cd01065 19 GKKVLILG-AGGAARAVAYALAELGA------AKIVIVNRTL--EKAKALAERFGEL---G-IAI-AYLDLEELLAEADL 84 (155)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHCCC------CEEEEEcCCH--HHHHHHHHHHhhc---c-cce-eecchhhccccCCE
Confidence 47999999 59999999999987541 1789999864 3333333222211 0 011 13455666899999
Q ss_pred EEEecCCC
Q 017740 119 AVMVGGFP 126 (366)
Q Consensus 119 VIi~aG~~ 126 (366)
||.+....
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99986543
No 364
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.74 E-value=0.028 Score=55.60 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.++||+|+||+|.+|..+...|...+.+ +++++..+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~------el~~l~s~ 72 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDF------EITVMTAD 72 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCC------eEEEEECh
Confidence 4579999999999999999988876432 78877754
No 365
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.068 Score=56.42 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+|.+|.+++..|++.+. +++++++++
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-------~V~~~~r~~ 405 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-------TVFLVARNG 405 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-------EEEEEECCH
Confidence 46899999999999999999988664 789999864
No 366
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=95.72 E-value=0.033 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc
Q 017740 40 CRVLVTGATGQIGYALVPMIARG 62 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~ 62 (366)
|+|+|+||+|+||+.++..|++.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~ 23 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLER 23 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHh
Confidence 48999999999999999999875
No 367
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.69 E-value=0.066 Score=49.32 Aligned_cols=35 Identities=26% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 38 EPCRVLVTGATG--QIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 38 ~~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
+.++|+|+||+| .+|.+++..|+..+. ++.+.+++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~-------~vi~~~r~ 40 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGI-------DIFFTYWS 40 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCC-------cEEEEcCC
Confidence 346899999885 699999999987654 67888765
No 368
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.69 E-value=0.16 Score=48.04 Aligned_cols=67 Identities=18% Similarity=0.373 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhh-hHHHHHhhhhcCCccceEEeCCH-hhhhCCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDAAFPLLKGVVATTDV-VEACKDV 116 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~-~~~~dl~~~~~~~~~~v~~t~~l-~~al~~a 116 (366)
.++|+|+| .|.+|..++..|...+. .+..++.+.+.+.+. +...++.+ +.+.+. .++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~-------~v~i~g~d~~~~~~~~a~~lgv~d---------~~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGL-------VVRIIGRDRSAATLKAALELGVID---------ELTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCC-------eEEEEeecCcHHHHHHHhhcCccc---------ccccchhhhhcccC
Confidence 36899999 79999999999988765 455666654322111 11111111 122333 5778889
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+||++
T Consensus 66 D~Viva 71 (279)
T COG0287 66 DLVIVA 71 (279)
T ss_pred CEEEEe
Confidence 999998
No 369
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=95.65 E-value=0.054 Score=50.10 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=54.8
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHH-HHHhhhhc--C----CccceEE-eCCH------
Q 017740 44 VTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVK-MELIDAAF--P----LLKGVVA-TTDV------ 109 (366)
Q Consensus 44 IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~-~dl~~~~~--~----~~~~v~~-t~~l------ 109 (366)
||||+||+|+++...|++.... .+|+++-+..+.+...... ..+.+... . ...++.. ..|+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~-----~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lG 75 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPD-----VKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLG 75 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-T-----TEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG
T ss_pred CcCCCcHHHHHHHHHHHcCCCC-----cEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccC
Confidence 7999999999999999875320 1676666554321111111 11111000 0 0122221 1222
Q ss_pred -----hh-hhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 110 -----VE-ACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 110 -----~~-al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
++ -.+++|+|+++|+.-.-. .+..++...|+...+++.+.+.... .. .++.+|
T Consensus 76 L~~~~~~~L~~~v~~IiH~Aa~v~~~-~~~~~~~~~NV~gt~~ll~la~~~~-~~-~~~~iS 134 (249)
T PF07993_consen 76 LSDEDYQELAEEVDVIIHCAASVNFN-APYSELRAVNVDGTRNLLRLAAQGK-RK-RFHYIS 134 (249)
T ss_dssp --HHHHHHHHHH--EEEE--SS-SBS--S--EEHHHHHHHHHHHHHHHTSSS-----EEEEE
T ss_pred CChHHhhccccccceeeecchhhhhc-ccchhhhhhHHHHHHHHHHHHHhcc-Cc-ceEEec
Confidence 22 236899999998654321 2445577889999999999887643 22 444444
No 370
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.60 E-value=0.01 Score=55.11 Aligned_cols=119 Identities=15% Similarity=0.185 Sum_probs=70.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc----ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc---cceEEeCCHhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARG----IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL---KGVVATTDVVEA 112 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~----~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~---~~v~~t~~l~~a 112 (366)
.||++.| +|..|..++..|+.. ++-..+-+.++.++|... .+.....|+.+...++. .......++.++
T Consensus 26 ~riv~~G-AGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G---ll~~~r~~l~~~~~~~a~~~~~~~~~~~L~ea 101 (255)
T PF03949_consen 26 QRIVFFG-AGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG---LLTDDREDLNPHKKPFARKTNPEKDWGSLLEA 101 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE---EEBTTTSSHSHHHHHHHBSSSTTT--SSHHHH
T ss_pred cEEEEeC-CChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc---eEeccCccCChhhhhhhccCcccccccCHHHH
Confidence 5999999 599999999988764 441000012799999863 22211123322211111 111112689999
Q ss_pred hCCC--cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc---hHHHHHHH
Q 017740 113 CKDV--NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN---TNALILKE 177 (366)
Q Consensus 113 l~~a--DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~---~~t~~~~~ 177 (366)
++++ |++|=+.|.+... .+++.+.|.+++ ++.+|.-.|||.. ....-+++
T Consensus 102 v~~~kPtvLIG~S~~~g~f--------------t~evv~~Ma~~~-erPIIF~LSNPt~~aE~~peda~~ 156 (255)
T PF03949_consen 102 VKGAKPTVLIGLSGQGGAF--------------TEEVVRAMAKHN-ERPIIFPLSNPTPKAECTPEDAYE 156 (255)
T ss_dssp HHCH--SEEEECSSSTTSS---------------HHHHHHCHHHS-SSEEEEE-SSSCGGSSS-HHHHHH
T ss_pred HHhcCCCEEEEecCCCCcC--------------CHHHHHHHhccC-CCCEEEECCCCCCcccCCHHHHHh
Confidence 9999 8888665544321 346788888998 7788888999975 44444444
No 371
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.60 E-value=0.069 Score=51.14 Aligned_cols=74 Identities=7% Similarity=0.011 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..+++|+| +|..|.+.+..+..-.-+ .++.+||++. ++++....++.+. ..-.+....+..+++++||+
T Consensus 117 a~~l~iiG-aG~QA~~~~~a~~~v~~i-----~~v~v~~r~~--~~a~~f~~~~~~~---~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 117 VENFTIIG-SGFQAETQLEGMASVYNP-----KRIRVYSRNF--DHARAFAERFSKE---FGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCCE
Confidence 47899999 699999888777653222 2899999975 4555555555432 12246667888999999999
Q ss_pred EEEec
Q 017740 119 AVMVG 123 (366)
Q Consensus 119 VIi~a 123 (366)
|+.+-
T Consensus 186 V~taT 190 (301)
T PRK06407 186 ITSIT 190 (301)
T ss_pred EEEec
Confidence 98663
No 372
>PLN02256 arogenate dehydrogenase
Probab=95.56 E-value=0.27 Score=47.15 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhh-CCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-KDV 116 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al-~~a 116 (366)
.++||+|+| .|.+|..++..|.+.+. ++..+|.+. . ...+.++ .+....+..+.+ .++
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-------~V~~~d~~~--~--~~~a~~~---------gv~~~~~~~e~~~~~a 93 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-------TVLATSRSD--Y--SDIAAEL---------GVSFFRDPDDFCEEHP 93 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCC-------EEEEEECcc--H--HHHHHHc---------CCeeeCCHHHHhhCCC
Confidence 347999999 69999999999987543 788899763 1 1111111 112245555555 479
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+|+++
T Consensus 94 DvVila 99 (304)
T PLN02256 94 DVVLLC 99 (304)
T ss_pred CEEEEe
Confidence 999998
No 373
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.1 Score=50.04 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+|.||..++..|++.+. +|++.+++.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-------~Vil~~R~~ 48 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-------EVILPVRNR 48 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 46899999999999999999998664 788888864
No 374
>PRK07041 short chain dehydrogenase; Provisional
Probab=95.54 E-value=0.07 Score=48.13 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=58.9
Q ss_pred EEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhh-cC-CccceEEeCCHhhhhC---CCc
Q 017740 43 LVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA-FP-LLKGVVATTDVVEACK---DVN 117 (366)
Q Consensus 43 ~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~-~~-~~~~v~~t~~l~~al~---~aD 117 (366)
+||||+|++|+.++..|++.+. ++++.+++. +.+.....++.... .. ..-++.-..++.++++ ..|
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-------~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-------RVTIASRSR--DRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-------EEEEEeCCH--HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 4899999999999999998765 788999864 23333322221100 00 0011111122223333 469
Q ss_pred EEEEecCCCCCCC---CC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 118 IAVMVGGFPRKEG---ME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 118 iVIi~aG~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
++|..+|...... .+ ....+..|......+.+ ..... ....+++++
T Consensus 72 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~-~~g~iv~~s 123 (230)
T PRK07041 72 HVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIA-PGGSLTFVS 123 (230)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhc-CCeEEEEEC
Confidence 9999988643211 11 23345566655555555 22222 334555443
No 375
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.54 E-value=0.096 Score=50.80 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
.++|+|+| +|..|.+.+..+.. .+. . ++.+++++. ++++....++.+. ..-.+....++.++++++|
T Consensus 132 ~~~v~IiG-aG~~a~~~~~al~~~~~~-~-----~V~v~~R~~--~~a~~l~~~~~~~---~g~~v~~~~d~~~al~~aD 199 (330)
T PRK08291 132 ASRAAVIG-AGEQARLQLEALTLVRPI-R-----EVRVWARDA--AKAEAYAADLRAE---LGIPVTVARDVHEAVAGAD 199 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC-C-----EEEEEcCCH--HHHHHHHHHHhhc---cCceEEEeCCHHHHHccCC
Confidence 46999999 69999988877764 332 1 899999874 4455444444321 1123455678889999999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+.+.
T Consensus 200 iVi~aT 205 (330)
T PRK08291 200 IIVTTT 205 (330)
T ss_pred EEEEee
Confidence 998774
No 376
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.09 Score=48.58 Aligned_cols=35 Identities=31% Similarity=0.212 Sum_probs=29.2
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATG-QIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G-~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++++||||+| .+|..++..|+..+. ++.+.|++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-------~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-------RVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-------EEEEEeCCH
Confidence 46899999887 699999999988665 688888764
No 377
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.22 Score=45.36 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL 92 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl 92 (366)
.+.++|+||++.+|..++..|++.+. ++++.++++ +.++....++
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-------~V~~~~r~~--~~l~~~~~~i 49 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-------TLILCDQDQ--SALKDTYEQC 49 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-------EEEEEcCCH--HHHHHHHHHH
Confidence 46899999999999999999998765 788888864 3444333333
No 378
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.52 E-value=0.025 Score=52.52 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=72.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc----CCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcC---CccceEEeCCHhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIM----LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP---LLKGVVATTDVVEA 112 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~----~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~---~~~~v~~t~~l~~a 112 (366)
.||++.| +|..|..++..|+.... ...+-+.++.++|... .+.....|+.....+ +..+-....++.++
T Consensus 26 ~riv~~G-AGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G---ll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 26 HKVLFNG-AGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG---LLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred cEEEEEC-cCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC---eEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 6999999 59999999998875432 1111233789999753 111111111110000 11111224689999
Q ss_pred hC--CCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc---hHHHHHHHH
Q 017740 113 CK--DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN---TNALILKEF 178 (366)
Q Consensus 113 l~--~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~---~~t~~~~~~ 178 (366)
++ ++|++|=+.+.|.- + .+++.+.|.+++ ++.+|.-.|||.. ....-+++.
T Consensus 102 v~~~kptvlIG~S~~~g~--------f------t~evv~~Ma~~~-~~PIIFaLSNPt~~aE~tpe~a~~~ 157 (254)
T cd00762 102 VEAAKPDFLIGVSRVGGA--------F------TPEVIRAXAEIN-ERPVIFALSNPTSKAECTAEEAYTA 157 (254)
T ss_pred HHhhCCCEEEEeCCCCCC--------C------CHHHHHHHhhcC-CCCEEEECCCcCCccccCHHHHHhh
Confidence 99 99998866554431 1 236778888888 7788888999974 455555543
No 379
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.52 E-value=0.08 Score=51.26 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
...+++|+| +|..|...+..++...-+ .++.++|++. ++.+....++.+. ...++....+..++++++|
T Consensus 126 ~~~~v~iiG-aG~~a~~~~~al~~~~~~-----~~v~v~~r~~--~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~aD 194 (325)
T PRK08618 126 DAKTLCLIG-TGGQAKGQLEAVLAVRDI-----ERVRVYSRTF--EKAYAFAQEIQSK---FNTEIYVVNSADEAIEEAD 194 (325)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCc-----cEEEEECCCH--HHHHHHHHHHHHh---cCCcEEEeCCHHHHHhcCC
Confidence 346899999 699998887766542211 2899999975 4444444444321 1123445677888999999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+.+-
T Consensus 195 iVi~aT 200 (325)
T PRK08618 195 IIVTVT 200 (325)
T ss_pred EEEEcc
Confidence 999874
No 380
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.50 E-value=0.068 Score=49.35 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=29.1
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 38 EPCRVLVTGAT--GQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 38 ~~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
+.+.++||||+ +.||..++..|++.+. +|++.+++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-------~Vi~~~r~ 42 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-------TVIYTYQN 42 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEecCc
Confidence 34689999987 6899999999998665 78888875
No 381
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.023 Score=52.55 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
++|+|+||+|++|++++..|+..+. +++..-++. +.+.... .... ....++.....+..++++.|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~-------~v~~~~r~~--~~~~~~~---~~v~-~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH-------EVRAAVRNP--EAAAALA---GGVE-VVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC-------EEEEEEeCH--HHHHhhc---CCcE-EEEeccCCHhHHHHHhccccEE
Confidence 4899999999999999999988644 666666653 2222111 1110 0112344445677889999999
Q ss_pred EEecCCC
Q 017740 120 VMVGGFP 126 (366)
Q Consensus 120 Ii~aG~~ 126 (366)
+++.+..
T Consensus 68 ~~i~~~~ 74 (275)
T COG0702 68 LLISGLL 74 (275)
T ss_pred EEEeccc
Confidence 9886543
No 382
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.46 E-value=0.087 Score=53.84 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCC---
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD--- 115 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~--- 115 (366)
.++|.+|| .|.+|++++.+|+..+. +++.||++. ++.+......... ...++....++.+.++.
T Consensus 6 ~~~IG~IG-LG~MG~~mA~nL~~~G~-------~V~V~NRt~--~k~~~l~~~~~~~---Ga~~~~~a~s~~e~v~~l~~ 72 (493)
T PLN02350 6 LSRIGLAG-LAVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKE---GNLPLYGFKDPEDFVLSIQK 72 (493)
T ss_pred CCCEEEEe-eHHHHHHHHHHHHhCCC-------eEEEECCCH--HHHHHHHHhhhhc---CCcccccCCCHHHHHhcCCC
Confidence 35899999 89999999999998776 899999874 3333221101100 11223344566665554
Q ss_pred CcEEEEe
Q 017740 116 VNIAVMV 122 (366)
Q Consensus 116 aDiVIi~ 122 (366)
+|+|+++
T Consensus 73 ~dvIi~~ 79 (493)
T PLN02350 73 PRSVIIL 79 (493)
T ss_pred CCEEEEE
Confidence 9999988
No 383
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.44 E-value=0.079 Score=51.03 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
...+++|+| +|..+.+.+..+.. .+ +. +|.+++++. ++++..+.++.+ ..-.+....+.++++++|
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~-i~-----~v~v~~r~~--~~~~~~~~~~~~----~~~~v~~~~~~~~av~~a 193 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRP-IK-----EVRVYSRSP--ERAEAFAARLRD----LGVPVVAVDSAEEAVRGA 193 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS---S-----EEEEE-SSH--HHHHHHHHHHHC----CCTCEEEESSHHHHHTTS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCC-ce-----EEEEEccCh--hHHHHHHHhhcc----ccccceeccchhhhcccC
Confidence 346899999 69999988887765 33 22 899999975 455555555544 134567778899999999
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+|+.+
T Consensus 194 Dii~ta 199 (313)
T PF02423_consen 194 DIIVTA 199 (313)
T ss_dssp SEEEE-
T ss_pred CEEEEc
Confidence 998865
No 384
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=95.39 E-value=0.18 Score=47.17 Aligned_cols=61 Identities=23% Similarity=0.214 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| +|.+|++++..|.+.+... +.++..+|++. +.+ .+....+..++++++|+|
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~---~~~i~~~~~~~--~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIG---KENIYYHTPSK--KNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCC---cceEEEECCCh--hcC----------------CeEEeCChHHHHHhCCEE
Confidence 6899999 6999999999998765432 12588888753 111 012344556778899999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
|++
T Consensus 62 ila 64 (260)
T PTZ00431 62 VLA 64 (260)
T ss_pred EEE
Confidence 988
No 385
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.36 E-value=0.054 Score=50.49 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||+|+| +|.+|++++..|...+.. ...+.++|++. ++++ .+.+. . ..+..+.+..+.++++|+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~----~~~i~v~~r~~--~~~~----~l~~~-~---~~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPAD----VSEIIVSPRNA--QIAA----RLAER-F---PKVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCC----hheEEEECCCH--HHHH----HHHHH-c---CCceEeCCHHHHHHhCCEE
Confidence 3799999 699999999999875431 12567888753 3322 22111 0 1234456667778899999
Q ss_pred EEec
Q 017740 120 VMVG 123 (366)
Q Consensus 120 Ii~a 123 (366)
+++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9983
No 386
>PRK06483 dihydromonapterin reductase; Provisional
Probab=95.36 E-value=0.081 Score=48.04 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=29.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++++|+||+|.+|.+++..|++.+. ++.+.++++
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~-------~V~~~~r~~ 36 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ-------PVIVSYRTH 36 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC-------eEEEEeCCc
Confidence 5899999999999999999988664 788888764
No 387
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=95.33 E-value=0.11 Score=46.92 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=25.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
.++|+||+|++|+.++..|+..+. ++++...
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-------~v~~~~r 32 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY-------RVAANCG 32 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC-------EEEEEeC
Confidence 589999999999999999987654 6666665
No 388
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=95.29 E-value=0.56 Score=45.12 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhh-hHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEEe
Q 017740 51 IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALN-GVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMV 122 (366)
Q Consensus 51 vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~-~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi~ 122 (366)
=|+++|.+|++.++ ++.+||++. +.+. .....+.+. ......+..++++++|+||++
T Consensus 31 gGspMArnLlkAGh-------eV~V~Drnr--sa~e~e~~e~Laea------GA~~AaS~aEAAa~ADVVIL~ 88 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-------DVVLAEPNR--EFMSDDLWKKVEDA------GVKVVSDDKEAAKHGEIHVLF 88 (341)
T ss_pred CHHHHHHHHHHCCC-------EEEEEeCCh--hhhhhhhhHHHHHC------CCeecCCHHHHHhCCCEEEEe
Confidence 47889999887665 899999864 2221 122223222 124456778999999999988
No 389
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.26 E-value=0.061 Score=52.43 Aligned_cols=77 Identities=17% Similarity=0.391 Sum_probs=47.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC
Q 017740 35 IPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 114 (366)
Q Consensus 35 m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~ 114 (366)
|+.+.+||+|+||+|.+|+-+...|...+.+. ..++.++..... .|....+.. .++.+..-..+.++
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~---v~~l~~~aS~~s----aGk~~~~~~------~~l~v~~~~~~~~~ 67 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFN---IAEVTLLSSKRS----AGKTVQFKG------REIIIQEAKINSFE 67 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCC---cccEEEEECccc----CCCCeeeCC------cceEEEeCCHHHhc
Confidence 44456799999999999999999888644332 125777765421 233322211 13333322235678
Q ss_pred CCcEEEEecC
Q 017740 115 DVNIAVMVGG 124 (366)
Q Consensus 115 ~aDiVIi~aG 124 (366)
+.|+++++.+
T Consensus 68 ~~Divf~a~~ 77 (347)
T PRK06728 68 GVDIAFFSAG 77 (347)
T ss_pred CCCEEEECCC
Confidence 8999999864
No 390
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.18 E-value=0.3 Score=45.11 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
.++++||||+|.||.+++..|++.+. ++++.+.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-------~v~~~~~ 40 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-------NIAFTYN 40 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEcC
Confidence 46899999999999999999998664 6777654
No 391
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.18 E-value=0.1 Score=44.22 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-+.++|+|+|.+..+|..++..|.+.+. ++.+++.+. .++.+++++|
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga-------tV~~~~~~t--------------------------~~l~~~v~~A 72 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA-------TVYSCDWKT--------------------------IQLQSKVHDA 72 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-------EEEEeCCCC--------------------------cCHHHHHhhC
Confidence 3568999999999999999999987654 677777531 2566789999
Q ss_pred cEEEEecCCC
Q 017740 117 NIAVMVGGFP 126 (366)
Q Consensus 117 DiVIi~aG~~ 126 (366)
|+||.+.|.+
T Consensus 73 DIVvsAtg~~ 82 (140)
T cd05212 73 DVVVVGSPKP 82 (140)
T ss_pred CEEEEecCCC
Confidence 9999998876
No 392
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.18 E-value=0.13 Score=49.87 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..+++|+| +|..|...+..|.. .++ .++.+++++. ++.+..+.++.+. ..-++....++.+++++||
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~~i------~~v~V~~R~~--~~a~~~a~~~~~~---~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVRDI------RSARIWARDS--AKAEALALQLSSL---LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhCCc------cEEEEECCCH--HHHHHHHHHHHhh---cCceEEEeCCHHHHhccCC
Confidence 46899999 69999999888864 332 2799999875 4455454444321 1123455678888999999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+.+-
T Consensus 197 iVvtaT 202 (326)
T TIGR02992 197 IIVTTT 202 (326)
T ss_pred EEEEec
Confidence 999874
No 393
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=95.17 E-value=0.084 Score=47.91 Aligned_cols=31 Identities=32% Similarity=0.311 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
|+||||+|++|.+++..|++.+. ++++.+..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-------~v~~~~~~ 31 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-------EICVHYHS 31 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-------EEEEEeCC
Confidence 57999999999999999998665 67777654
No 394
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.16 E-value=0.015 Score=57.41 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=43.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE----eCCHhhhhCCCc
Q 017740 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA----TTDVVEACKDVN 117 (366)
Q Consensus 42 I~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~----t~~l~~al~~aD 117 (366)
|+|+|| |++|+.++..|++..-.. ++++.|++. ++++.....+.... ...+.. ..++.+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~-----~v~va~r~~--~~~~~~~~~~~~~~---~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE-----EVTVADRNP--EKAERLAEKLLGDR---VEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE------EEEEEESSH--HHHHHHHT--TTTT---EEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC-----cEEEEECCH--HHHHHHHhhccccc---eeEEEEecCCHHHHHHHHhcCC
Confidence 789997 999999999998754321 799999975 34443332221111 111111 123567899999
Q ss_pred EEEEecCCC
Q 017740 118 IAVMVGGFP 126 (366)
Q Consensus 118 iVIi~aG~~ 126 (366)
+||.++|..
T Consensus 70 vVin~~gp~ 78 (386)
T PF03435_consen 70 VVINCAGPF 78 (386)
T ss_dssp EEEE-SSGG
T ss_pred EEEECCccc
Confidence 999997653
No 395
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.16 E-value=0.13 Score=50.34 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..+++|+| +|..+.+.+..+..-.-+ .+|.+|+++. ++.+....++.+. .-++....+..+++++||+
T Consensus 129 a~~l~iiG-aG~QA~~~l~a~~~vr~i-----~~V~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 129 SRTMALIG-NGAQSEFQALAFKALLGI-----EEIRLYDIDP--AATAKLARNLAGP----GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHhCCc-----eEEEEEeCCH--HHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCE
Confidence 46899999 699998887766652212 2899999975 4455555555431 1246667889999999999
Q ss_pred EEEec
Q 017740 119 AVMVG 123 (366)
Q Consensus 119 VIi~a 123 (366)
|+.+-
T Consensus 197 IvtaT 201 (346)
T PRK07589 197 ITTVT 201 (346)
T ss_pred EEEec
Confidence 98764
No 396
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.14 E-value=0.067 Score=52.21 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
..++||+|+||+|++|..+...|...++ +..++..+..... .|...+... .++....-..++++++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~h----P~~~l~~las~rs----aGk~~~~~~------~~~~v~~~~~~~~~~~ 70 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDF----PYSSLKMLASARS----AGKKVTFEG------RDYTVEELTEDSFDGV 70 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCC----CcceEEEEEccCC----CCCeeeecC------ceeEEEeCCHHHHcCC
Confidence 3457999999999999999988876432 1126665544321 222222211 2223322223567899
Q ss_pred cEEEEecC
Q 017740 117 NIAVMVGG 124 (366)
Q Consensus 117 DiVIi~aG 124 (366)
|+|+++.|
T Consensus 71 D~vf~a~p 78 (344)
T PLN02383 71 DIALFSAG 78 (344)
T ss_pred CEEEECCC
Confidence 99999864
No 397
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.12 E-value=0.16 Score=48.99 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
...+|+|+| +|..|...+..+.. .+. .+|.+++++. ++.+....++.+. ..++....+..+++++|
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~------~~V~V~~Rs~--~~a~~~a~~~~~~----g~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI------KQVRVWGRDP--AKAEALAAELRAQ----GFDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC------CEEEEEcCCH--HHHHHHHHHHHhc----CCceEEeCCHHHHHhcC
Confidence 357999999 69999999876654 332 1899999875 4445444444321 11355567788899999
Q ss_pred cEEEEec
Q 017740 117 NIAVMVG 123 (366)
Q Consensus 117 DiVIi~a 123 (366)
|+|+.+-
T Consensus 191 DIVi~aT 197 (314)
T PRK06141 191 DIISCAT 197 (314)
T ss_pred CEEEEee
Confidence 9996553
No 398
>PLN02712 arogenate dehydrogenase
Probab=95.12 E-value=0.35 Score=51.46 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhh-CCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC-KDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al-~~aD 117 (366)
++||+|+| .|.+|..++..|...+. +|..+|.+. .. ..+.++ .+....+..+.+ +++|
T Consensus 52 ~~kIgIIG-~G~mG~slA~~L~~~G~-------~V~~~dr~~--~~--~~A~~~---------Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 52 QLKIAIIG-FGNYGQFLAKTLISQGH-------TVLAHSRSD--HS--LAARSL---------GVSFFLDPHDLCERHPD 110 (667)
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC-------EEEEEeCCH--HH--HHHHHc---------CCEEeCCHHHHhhcCCC
Confidence 47999999 69999999999987654 788899863 11 111111 122345655544 5799
Q ss_pred EEEEe
Q 017740 118 IAVMV 122 (366)
Q Consensus 118 iVIi~ 122 (366)
+|+++
T Consensus 111 vViLa 115 (667)
T PLN02712 111 VILLC 115 (667)
T ss_pred EEEEc
Confidence 99998
No 399
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.08 E-value=0.17 Score=48.76 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
....++|+| +|..+.+.+..+....-+ .+|.+||++. ++++.....+.+. .-++....+..+++++||
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i-----~~v~v~~r~~--~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDC-----RQLWVWGRSE--TALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCC-----CEEEEECCCH--HHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence 347899999 699999888877653222 2899999975 4444444333321 234666778889999999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+.+-
T Consensus 195 IV~taT 200 (315)
T PRK06823 195 LIVTTT 200 (315)
T ss_pred EEEEec
Confidence 998763
No 400
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.07 E-value=0.16 Score=49.23 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
+.+||+|+| .|.+|.+++..|...++ +++.++.+.. .....+. .. .+.. .+..+++++||
T Consensus 16 ~gktIgIIG-~GsmG~AlA~~L~~sG~-------~Vvv~~r~~~--~s~~~A~---~~------G~~~-~s~~eaa~~AD 75 (330)
T PRK05479 16 KGKKVAIIG-YGSQGHAHALNLRDSGV-------DVVVGLREGS--KSWKKAE---AD------GFEV-LTVAEAAKWAD 75 (330)
T ss_pred CCCEEEEEe-eHHHHHHHHHHHHHCCC-------EEEEEECCch--hhHHHHH---HC------CCee-CCHHHHHhcCC
Confidence 347999999 69999999999987654 6777766431 1111111 11 1122 36778999999
Q ss_pred EEEEe
Q 017740 118 IAVMV 122 (366)
Q Consensus 118 iVIi~ 122 (366)
+|+++
T Consensus 76 VVvLa 80 (330)
T PRK05479 76 VIMIL 80 (330)
T ss_pred EEEEc
Confidence 99998
No 401
>PRK08017 oxidoreductase; Provisional
Probab=95.06 E-value=0.15 Score=46.61 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=28.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
++|+||||+|++|++++..|++.+. ++++.+++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-------~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-------RVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEeCCH
Confidence 4799999999999999999987654 788888764
No 402
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.074 Score=50.72 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+|.+|.+|..++.+|++.+. ++.+++... .++.+.++.||
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga-------tVtv~~~~t--------------------------~~l~e~~~~AD 204 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC-------SVTVVHSRS--------------------------TDAKALCRQAD 204 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEECCCC--------------------------CCHHHHHhcCC
Confidence 457999999767999999999998765 788887542 15678889999
Q ss_pred EEEEecCCCC
Q 017740 118 IAVMVGGFPR 127 (366)
Q Consensus 118 iVIi~aG~~~ 127 (366)
+||.+.|.|.
T Consensus 205 IVIsavg~~~ 214 (301)
T PRK14194 205 IVVAAVGRPR 214 (301)
T ss_pred EEEEecCChh
Confidence 9999988764
No 403
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.03 E-value=0.12 Score=49.50 Aligned_cols=72 Identities=14% Similarity=0.025 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh-cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIAR-GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~-~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
...+|+|+| +|..|...+..+.. .+. .++.++|++. ++++..+.++... ...+. ..+..++++++
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~------~~v~v~~r~~--~~a~~~a~~~~~~----~~~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPV------RRVWVRGRTA--ASAAAFCAHARAL----GPTAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCC------CEEEEEcCCH--HHHHHHHHHHHhc----CCeeE-ECCHHHHhhcC
Confidence 347999999 69999999988865 332 2799999975 4455454444321 11222 46778899999
Q ss_pred cEEEEec
Q 017740 117 NIAVMVG 123 (366)
Q Consensus 117 DiVIi~a 123 (366)
|+|+.+-
T Consensus 190 DiVitaT 196 (304)
T PRK07340 190 DLVVTAT 196 (304)
T ss_pred CEEEEcc
Confidence 9999874
No 404
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.02 E-value=0.13 Score=46.67 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIM 64 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~ 64 (366)
..++|+||+|++|++++..|++.+.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 3799999999999999999987654
No 405
>PRK05599 hypothetical protein; Provisional
Probab=95.02 E-value=0.25 Score=45.33 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHh
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELI 93 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~ 93 (366)
.++||||++.+|..++..|++ +. ++++.++++ +.++....++.
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g~-------~Vil~~r~~--~~~~~~~~~l~ 44 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-GE-------DVVLAARRP--EAAQGLASDLR 44 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-CC-------EEEEEeCCH--HHHHHHHHHHH
Confidence 589999999999999999984 43 788888764 44554444453
No 406
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.02 E-value=0.073 Score=48.36 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=66.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccch--HhhhhHHHHHhhhh----cCC-------ccceEEe
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAA--EALNGVKMELIDAA----FPL-------LKGVVAT 106 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~--~~l~~~~~dl~~~~----~~~-------~~~v~~t 106 (366)
.||+|.| +|-+|+.+|..++..++ ++.|||+.+.. ..++....|+.... ... ..-+.+|
T Consensus 4 ~ki~ivg-Sgl~g~~WAmlFAs~Gy-------qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t 75 (313)
T KOG2305|consen 4 GKIAIVG-SGLVGSSWAMLFASSGY-------QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGT 75 (313)
T ss_pred cceeEee-cccccchHHHHHhccCc-------eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCC
Confidence 5999999 89999999999999887 89999997521 11222223332211 110 1346677
Q ss_pred CCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcchHH
Q 017740 107 TDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNA 172 (366)
Q Consensus 107 ~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~~~t 172 (366)
+++.|..++|=.+ ++... ..+...+++-+++++...| ..|+.|..+..|.
T Consensus 76 ~~l~E~vk~Ai~i--------QEcvp------E~L~lkk~ly~qlD~i~d~--~tIlaSSTSt~mp 125 (313)
T KOG2305|consen 76 TSLNELVKGAIHI--------QECVP------EDLNLKKQLYKQLDEIADP--TTILASSTSTFMP 125 (313)
T ss_pred ccHHHHHhhhhhH--------Hhhch------HhhHHHHHHHHHHHHhcCC--ceEEeccccccCh
Confidence 8888888877333 11111 1134456677778887644 3466665554444
No 407
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.01 E-value=0.13 Score=48.25 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.5
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATG--QIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.+.++||||++ .||..++..|++.+. ++++.+++
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga-------~V~~~~r~ 42 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA-------ELAFTYQG 42 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC-------EEEEecCc
Confidence 46799999875 899999999998765 78888875
No 408
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.99 E-value=0.055 Score=52.58 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=42.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+||+|++|..++..|.+.++ +..+++.+-.+.. .+...++.. .++........+++++|+|
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h----p~~~l~~l~s~~~----~g~~l~~~g------~~i~v~d~~~~~~~~vDvV 67 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF----PVDKLRLLASARS----AGKELSFKG------KELKVEDLTTFDFSGVDIA 67 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----CcceEEEEEcccc----CCCeeeeCC------ceeEEeeCCHHHHcCCCEE
Confidence 6999999999999999998877432 1126666654321 222222211 1222221112456789999
Q ss_pred EEecC
Q 017740 120 VMVGG 124 (366)
Q Consensus 120 Ii~aG 124 (366)
+++.|
T Consensus 68 f~A~g 72 (334)
T PRK14874 68 LFSAG 72 (334)
T ss_pred EECCC
Confidence 98864
No 409
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.95 E-value=0.11 Score=50.44 Aligned_cols=64 Identities=28% Similarity=0.350 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+| .|.||+.++..|+.+ ++ .++..+|..... . .... +....++.+++++||
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~--~g----~~V~~~d~~~~~-----~---~~~~-------~~~~~~l~ell~~aD 202 (332)
T PRK08605 145 KDLKVAVIG-TGRIGLAVAKIFAKG--YG----SDVVAYDPFPNA-----K---AATY-------VDYKDTIEEAVEGAD 202 (332)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhc--CC----CEEEEECCCccH-----h---HHhh-------ccccCCHHHHHHhCC
Confidence 357999999 699999999998532 12 278889876421 0 1111 223457888999999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+++.
T Consensus 203 vIvl~l 208 (332)
T PRK08605 203 IVTLHM 208 (332)
T ss_pred EEEEeC
Confidence 999984
No 410
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=94.94 E-value=0.13 Score=49.41 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=29.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcc-cCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGI-MLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~-~~~~~~~~ei~L~D~~~ 80 (366)
+.++||||++.||.+++..|++.+ . ++++.+++.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~-------~V~l~~r~~ 38 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW-------HVIMACRDF 38 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC-------EEEEEeCCH
Confidence 579999999999999999998766 4 788888764
No 411
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.88 E-value=0.096 Score=49.39 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEE-EEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARG-IMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei-~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
++||+|+| .|.+|+.++..|... .- .++ .++|.++ ++.+.....+ . ......++.+.+.++
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~------~el~aV~dr~~--~~a~~~a~~~-g-------~~~~~~~~eell~~~ 68 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPG------LTLSAVAVRDP--QRHADFIWGL-R-------RPPPVVPLDQLATHA 68 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCC------eEEEEEECCCH--HHHHHHHHhc-C-------CCcccCCHHHHhcCC
Confidence 47999999 699999999988753 11 255 4788764 2222221111 0 012235667778899
Q ss_pred cEEEEecC
Q 017740 117 NIAVMVGG 124 (366)
Q Consensus 117 DiVIi~aG 124 (366)
|+|++++.
T Consensus 69 D~Vvi~tp 76 (271)
T PRK13302 69 DIVVEAAP 76 (271)
T ss_pred CEEEECCC
Confidence 99999953
No 412
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.87 E-value=0.068 Score=51.56 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeC-CHhh-hhCCC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT-DVVE-ACKDV 116 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~-~l~~-al~~a 116 (366)
++||+|+||+|+.|.-|..+|...+- .|+.++...+ . .+....-.+.......+..... +..+ ..++|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~------ve~~~~ss~~---~-~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~ 71 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPD------VELILISSRE---R-AGKPVSDVHPNLRGLVDLPFQTIDPEKIELDEC 71 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCC------eEEEEeechh---h-cCCchHHhCcccccccccccccCChhhhhcccC
Confidence 46999999999999999999987643 3777887653 1 2332222222211111122221 2222 35568
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+|+++
T Consensus 72 DvvFla 77 (349)
T COG0002 72 DVVFLA 77 (349)
T ss_pred CEEEEe
Confidence 999988
No 413
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=94.86 E-value=0.27 Score=44.21 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeC---CHhh--
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATT---DVVE-- 111 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~---~l~~-- 111 (366)
-....|+||||+..||..++..+.+.+. ++.+..+++ +++.+.....+..... .-.+.-.. .+.+
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN-------~VIi~gR~e--~~L~e~~~~~p~~~t~-v~Dv~d~~~~~~lvewL 72 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGN-------TVIICGRNE--ERLAEAKAENPEIHTE-VCDVADRDSRRELVEWL 72 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCC-------EEEEecCcH--HHHHHHHhcCcchhee-eecccchhhHHHHHHHH
Confidence 3456899999999999999999987544 788888864 5555433333322110 00111111 1122
Q ss_pred --hhCCCcEEEEecCCCCCCCCC-----h---hHHHhhh----HHHHHHHHHHHHhhcCCCcEEEEEcC
Q 017740 112 --ACKDVNIAVMVGGFPRKEGME-----R---KDVMSKN----VSIYKAQASALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 112 --al~~aDiVIi~aG~~~~~g~~-----r---~~~~~~n----~~~~~~i~~~i~~~~~~~~~viv~tN 166 (366)
..-+-+++|-.||.-+..+.. . .+-+.-| +.....+.+.+.+. |.+.||++|.
T Consensus 73 kk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q--~~a~IInVSS 139 (245)
T COG3967 73 KKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQ--PEATIINVSS 139 (245)
T ss_pred HhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCceEEEecc
Confidence 233568999999976543211 1 1112222 34445555555553 5787888764
No 414
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.84 E-value=0.076 Score=54.74 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=73.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc-----ccCCCCCCeEEEEEeCccchHhhhhHHHH-HhhhhcCCccceEEeCCHhhhh
Q 017740 40 CRVLVTGATGQIGYALVPMIARG-----IMLGPDQPVILHMLDIEPAAEALNGVKME-LIDAAFPLLKGVVATTDVVEAC 113 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~-----~~~~~~~~~ei~L~D~~~~~~~l~~~~~d-l~~~~~~~~~~v~~t~~l~~al 113 (366)
.||++.| +|..|..++..|+.. ++...+.+.++.++|... .+.....| +.+...++.+......++.+++
T Consensus 322 ~riv~~G-AGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G---Li~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 397 (581)
T PLN03129 322 QRILFAG-AGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG---LVTKSRKDSLQPFKKPFAHDHEPGASLLEAV 397 (581)
T ss_pred ceEEEEC-CCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC---eEeCCCCccChHHHHHHHhhcccCCCHHHHH
Confidence 6999999 599999999888762 332112234789999763 22211111 2221111111112246899999
Q ss_pred CC--CcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCc---chHHHHHHHH
Q 017740 114 KD--VNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA---NTNALILKEF 178 (366)
Q Consensus 114 ~~--aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv---~~~t~~~~~~ 178 (366)
++ +|++|=+.+.+.. + ..++.+.|.+++ ++.+|.-.|||. +....-+.+.
T Consensus 398 ~~vkptvLIG~S~~~g~--------F------t~evi~~Ma~~~-~rPIIFaLSNPt~~~E~~pe~a~~~ 452 (581)
T PLN03129 398 KAIKPTVLIGLSGVGGT--------F------TKEVLEAMASLN-ERPIIFALSNPTSKAECTAEEAYTW 452 (581)
T ss_pred hccCCCEEEEecCCCCC--------C------CHHHHHHHHhcC-CCCEEEECCCCCCCcCcCHHHHHHh
Confidence 99 7887755444321 1 236777888887 778888899997 5565555554
No 415
>PRK07791 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.19 Score=47.41 Aligned_cols=34 Identities=35% Similarity=0.265 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.+.++||||++.||..++..|++.+. ++++.|.+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~-------~vii~~~~ 39 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGA-------RVVVNDIG 39 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-------EEEEeeCC
Confidence 46899999999999999999998654 67887764
No 416
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=94.81 E-value=0.084 Score=50.32 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=44.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
|||.+|| .|.+|+.++..|++.++ ++.++|+++. .. ++... ......+..++++++|+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-------~v~v~~~~~~---~~----~~~~~------g~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-------QLHVTTIGPV---AD----ELLSL------GAVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-------eEEEEeCCHh---HH----HHHHc------CCeecCCHHHHHhcCCEE
Confidence 3799999 79999999999998765 7888998631 11 12111 122344566788999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
+++
T Consensus 60 i~~ 62 (292)
T PRK15059 60 FIM 62 (292)
T ss_pred EEe
Confidence 988
No 417
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.78 E-value=0.43 Score=44.83 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||+|+| .|.+|..++..|...+.. .++..+|+++ +.++ . ..+... +....+..+ +.++|+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~-----~~v~~~d~~~--~~~~-~---~~~~g~-----~~~~~~~~~-~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI-----SKVYGYDHNE--LHLK-K---ALELGL-----VDEIVSFEE-LKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC-----CEEEEEcCCH--HHHH-H---HHHCCC-----CcccCCHHH-HhcCCEE
Confidence 3899999 699999999999876531 2688889864 2222 1 111110 011234444 4469999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
|++
T Consensus 63 ila 65 (275)
T PRK08507 63 FLA 65 (275)
T ss_pred EEe
Confidence 998
No 418
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.78 E-value=0.079 Score=51.54 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
++||+|+||+|.+|.-+...|.+.++ +..+++.+...+. .|..+.+.. ..........++++++|+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~h----P~~~l~~v~s~~~----aG~~l~~~~------~~l~~~~~~~~~~~~vD~ 69 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDF----PVGTLHLLASSES----AGHSVPFAG------KNLRVREVDSFDFSQVQL 69 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCC----CceEEEEEECccc----CCCeeccCC------cceEEeeCChHHhcCCCE
Confidence 37999999999999999999986432 1126666654321 232222211 122332211234688999
Q ss_pred EEEec
Q 017740 119 AVMVG 123 (366)
Q Consensus 119 VIi~a 123 (366)
|+++.
T Consensus 70 vFla~ 74 (336)
T PRK05671 70 AFFAA 74 (336)
T ss_pred EEEcC
Confidence 98875
No 419
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.78 E-value=0.14 Score=44.40 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=41.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-+.++|+|+|.+..+|..++..|.+.+. .+.+++.. |.++.+.++.|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a-------tVt~~h~~--------------------------T~~l~~~~~~A 80 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA-------TVTICHSK--------------------------TKNLQEITRRA 80 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT--------EEEEE-TT--------------------------SSSHHHHHTTS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC-------eEEeccCC--------------------------CCcccceeeec
Confidence 3457999999888999999999987653 56666642 14566778899
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 81 DIVVsa~G~~~ 91 (160)
T PF02882_consen 81 DIVVSAVGKPN 91 (160)
T ss_dssp SEEEE-SSSTT
T ss_pred cEEeeeecccc
Confidence 99999988865
No 420
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=94.75 E-value=0.35 Score=44.81 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=26.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
..++||||+|.||++++..|++.+. ++++.+.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~-------~V~~~~~ 33 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY-------RVVLHYH 33 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC-------eEEEEcC
Confidence 3689999999999999999998665 6777654
No 421
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.13 Score=48.76 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhh
Q 017740 16 LFCVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDA 95 (366)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~ 95 (366)
+.|.+ +.+++.+..+ ....+.++|+|+|++|.+|.+++..|+..+. ++.+++..
T Consensus 139 ~p~T~--~gii~~L~~~-~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-------tVtv~~~~---------------- 192 (283)
T PRK14192 139 GSATP--AGIMRLLKAY-NIELAGKHAVVVGRSAILGKPMAMMLLNANA-------TVTICHSR---------------- 192 (283)
T ss_pred cCCcH--HHHHHHHHHc-CCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-------EEEEEeCC----------------
Confidence 45555 6666655432 2223457999999755699999999987654 68888752
Q ss_pred hcCCccceEEeCCHhhhhCCCcEEEEecCCCC
Q 017740 96 AFPLLKGVVATTDVVEACKDVNIAVMVGGFPR 127 (366)
Q Consensus 96 ~~~~~~~v~~t~~l~~al~~aDiVIi~aG~~~ 127 (366)
+.++.+.+++||+||.+.|.|.
T Consensus 193 ----------t~~L~~~~~~aDIvI~AtG~~~ 214 (283)
T PRK14192 193 ----------TQNLPELVKQADIIVGAVGKPE 214 (283)
T ss_pred ----------chhHHHHhccCCEEEEccCCCC
Confidence 1123444589999999987543
No 422
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.61 E-value=0.11 Score=52.72 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=42.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhh---hhCCCc
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE---ACKDVN 117 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~---al~~aD 117 (366)
+|.|+| .|.+|.+++.+|+..+. +|.++|+++ ++++........ ...+....++.+ +++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-------~V~v~drt~--~~~~~l~~~~~~-----g~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-------TVSVYNRTP--EKTDEFLAEHAK-----GKKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-------eEEEEeCCH--HHHHHHHhhccC-----CCCceecCCHHHHHhhcCCCC
Confidence 489999 79999999999998775 899999874 333322111000 011233333333 456789
Q ss_pred EEEEe
Q 017740 118 IAVMV 122 (366)
Q Consensus 118 iVIi~ 122 (366)
+|+++
T Consensus 66 vIil~ 70 (467)
T TIGR00873 66 KIMLM 70 (467)
T ss_pred EEEEE
Confidence 88887
No 423
>PRK07574 formate dehydrogenase; Provisional
Probab=94.60 E-value=0.23 Score=49.21 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|.|+| .|.||+.++..|..-+. ++..+|+.... .... ... .+....++.+.++.||
T Consensus 191 ~gktVGIvG-~G~IG~~vA~~l~~fG~-------~V~~~dr~~~~---~~~~---~~~------g~~~~~~l~ell~~aD 250 (385)
T PRK07574 191 EGMTVGIVG-AGRIGLAVLRRLKPFDV-------KLHYTDRHRLP---EEVE---QEL------GLTYHVSFDSLVSVCD 250 (385)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCCc---hhhH---hhc------CceecCCHHHHhhcCC
Confidence 357899999 79999999999986444 78999975311 1010 011 1233457889999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+|++.. |..+ +-..++ | .+.+... ++++.+|++++=
T Consensus 251 vV~l~l--Plt~--~T~~li--~-------~~~l~~m-k~ga~lIN~aRG 286 (385)
T PRK07574 251 VVTIHC--PLHP--ETEHLF--D-------ADVLSRM-KRGSYLVNTARG 286 (385)
T ss_pred EEEEcC--CCCH--HHHHHh--C-------HHHHhcC-CCCcEEEECCCC
Confidence 999983 2211 111111 1 2334444 477888888864
No 424
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.59 E-value=0.32 Score=45.93 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.++++|+| +|.+|.+++..|...+.. +|.+++++. ++++....++... ..+....+..+.+.++|+
T Consensus 123 ~k~vlVlG-aGg~a~ai~~aL~~~g~~------~V~v~~R~~--~~a~~l~~~~~~~-----~~~~~~~~~~~~~~~~Di 188 (278)
T PRK00258 123 GKRILILG-AGGAARAVILPLLDLGVA------EITIVNRTV--ERAEELAKLFGAL-----GKAELDLELQEELADFDL 188 (278)
T ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCC------EEEEEeCCH--HHHHHHHHHhhhc-----cceeecccchhccccCCE
Confidence 46899999 599999999999875532 799999874 3444333333211 012222234567889999
Q ss_pred EEEecCC
Q 017740 119 AVMVGGF 125 (366)
Q Consensus 119 VIi~aG~ 125 (366)
||-+...
T Consensus 189 vInaTp~ 195 (278)
T PRK00258 189 IINATSA 195 (278)
T ss_pred EEECCcC
Confidence 9988533
No 425
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=94.55 E-value=0.2 Score=47.54 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=43.1
Q ss_pred EEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEEec
Q 017740 44 VTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVG 123 (366)
Q Consensus 44 IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi~a 123 (366)
++| .|.+|..++..|+..+. ++.+||+++ ++.+ ++... ....+.+..++++++|+|+++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-------PVRVFDLFP--DAVE----EAVAA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-------eEEEEeCCH--HHHH----HHHHc------CCeecCCHHHHHhcCCEEEEeC
Confidence 478 79999999999998665 799999874 2222 22211 1234557778899999999983
No 426
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.54 E-value=0.36 Score=47.21 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEE-EEEeCccchHhhhhHHHHHhhh---hcCCccceEEe-CC------
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDA---AFPLLKGVVAT-TD------ 108 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei-~L~D~~~~~~~l~~~~~dl~~~---~~~~~~~v~~t-~~------ 108 (366)
++|.+|||+||+|..+...|+.+.-. +| +|+.-+.++........-+.+. .-....+++.- .|
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~------kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~l 74 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDA------KVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDL 74 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCC------cEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccC
Confidence 36999999999999999999875322 34 5555543222122111111111 10111233221 12
Q ss_pred ------HhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCc
Q 017740 109 ------VVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 159 (366)
Q Consensus 109 ------l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~ 159 (366)
+.+-..+.|.|++.+..-..- .+...+...|+....++.+-.... +++.
T Consensus 75 GL~~~~~~~La~~vD~I~H~gA~Vn~v-~pYs~L~~~NVlGT~evlrLa~~g-k~Kp 129 (382)
T COG3320 75 GLSERTWQELAENVDLIIHNAALVNHV-FPYSELRGANVLGTAEVLRLAATG-KPKP 129 (382)
T ss_pred CCCHHHHHHHhhhcceEEecchhhccc-CcHHHhcCcchHhHHHHHHHHhcC-CCce
Confidence 222334589999986542211 334556788998888888766553 3443
No 427
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.52 E-value=0.24 Score=48.09 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+| .|.||+.++..|..-+. ++..+|+.... . . +.... +. ..++.+.+++||
T Consensus 149 ~gktvgIiG-~G~IG~~vA~~l~~~G~-------~V~~~d~~~~~---~-~--~~~~~-------~~-~~~l~ell~~aD 206 (333)
T PRK13243 149 YGKTIGIIG-FGRIGQAVARRAKGFGM-------RILYYSRTRKP---E-A--EKELG-------AE-YRPLEELLRESD 206 (333)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCC-------EEEEECCCCCh---h-h--HHHcC-------CE-ecCHHHHHhhCC
Confidence 357999999 79999999999986544 78899986421 1 1 11111 12 246788899999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+|+++. |..+ .+ ..++ | .+.+... ++++.+|++++=
T Consensus 207 iV~l~l--P~t~-~T-~~~i--~-------~~~~~~m-k~ga~lIN~aRg 242 (333)
T PRK13243 207 FVSLHV--PLTK-ET-YHMI--N-------EERLKLM-KPTAILVNTARG 242 (333)
T ss_pred EEEEeC--CCCh-HH-hhcc--C-------HHHHhcC-CCCeEEEECcCc
Confidence 999984 3211 11 1111 1 1233443 478888888863
No 428
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.47 E-value=0.12 Score=45.23 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=42.6
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 38 EPCRVLVTGATGQ-IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 38 ~~~KI~IiGA~G~-vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
...||+|+|+ |. +|..++..|...+. ++.+.+++. .++.+.+++|
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~-------~V~v~~r~~--------------------------~~l~~~l~~a 88 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA-------TVTVCHSKT--------------------------KNLKEHTKQA 88 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC-------EEEEEECCc--------------------------hhHHHHHhhC
Confidence 3579999995 76 59989999987654 677888531 3566788999
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 89 DiVIsat~~~~ 99 (168)
T cd01080 89 DIVIVAVGKPG 99 (168)
T ss_pred CEEEEcCCCCc
Confidence 99999877764
No 429
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.44 E-value=0.16 Score=47.28 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATG--QIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.+.++||||++ .||.+++..|++.+. ++++.+++
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~-------~vil~~r~ 41 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA-------ELAFTYQN 41 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC-------EEEEEecc
Confidence 35799999864 799999999998664 68888875
No 430
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.44 E-value=0.24 Score=48.96 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhc-ccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARG-IMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~-~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
....++|+| +|..+...+..++.- +-+. ++.++|++. ++++..+.++.+. ++...++....+..+++++|
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v~~~i~-----~V~v~~r~~--~~a~~f~~~~~~~-~~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAVCPGID-----TIKIKGRGQ--KSLDSFATWVAET-YPQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhcCCcc-----EEEEECCCH--HHHHHHHHHHHHh-cCCCceEEEeCCHHHHHcCC
Confidence 357899999 699999888777652 2122 899999985 4555555555432 11112467778899999999
Q ss_pred cEEEEec
Q 017740 117 NIAVMVG 123 (366)
Q Consensus 117 DiVIi~a 123 (366)
|+|+.+-
T Consensus 225 DIVvtaT 231 (379)
T PRK06199 225 DIVTYCN 231 (379)
T ss_pred CEEEEcc
Confidence 9998653
No 431
>PRK08303 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.24 Score=47.41 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.+.++||||++.||.+++..|++.+. +|++.+++
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~-------~Vv~~~r~ 41 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGA-------TVYVTGRS 41 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-------EEEEEecc
Confidence 46899999999999999999998664 78888875
No 432
>PLN02712 arogenate dehydrogenase
Probab=94.40 E-value=0.62 Score=49.58 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhC-CC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK-DV 116 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~-~a 116 (366)
.++||+||| .|.+|..++..|...+. +|..+|++. + ...+.++ .+....+..+.++ ++
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~-------~V~~~dr~~--~--~~~a~~~---------Gv~~~~~~~el~~~~a 426 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH-------TVLAYSRSD--Y--SDEAQKL---------GVSYFSDADDLCEEHP 426 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC-------EEEEEECCh--H--HHHHHHc---------CCeEeCCHHHHHhcCC
Confidence 458999999 69999999999987553 788999863 1 1111111 1123456666565 58
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+|+++
T Consensus 427 DvVILa 432 (667)
T PLN02712 427 EVILLC 432 (667)
T ss_pred CEEEEC
Confidence 999998
No 433
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.38 E-value=0.11 Score=46.37 Aligned_cols=78 Identities=8% Similarity=0.058 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+|-+.-+|..++..|++.+. .+.++|++... +......+.|...+ .. ..+.++.+.++.||
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~A-------tVti~~~~~~~--~~~~~~~~~hs~t~-~~--~~~~~l~~~~~~AD 128 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGA-------RVYSVDINGIQ--VFTRGESIRHEKHH-VT--DEEAMTLDCLSQSD 128 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCC-------EEEEEecCccc--cccccccccccccc-cc--chhhHHHHHhhhCC
Confidence 457999999988999999999987654 78999875311 10000011121100 00 00123678899999
Q ss_pred EEEEecCCCC
Q 017740 118 IAVMVGGFPR 127 (366)
Q Consensus 118 iVIi~aG~~~ 127 (366)
+||.+.|.|.
T Consensus 129 IVIsAvG~~~ 138 (197)
T cd01079 129 VVITGVPSPN 138 (197)
T ss_pred EEEEccCCCC
Confidence 9999998876
No 434
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.38 E-value=0.22 Score=50.10 Aligned_cols=77 Identities=25% Similarity=0.236 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
+.++|.|+|+ |.+|..++..|+..+. +++++|.+.. +.+.....++... .-++.......+...++|
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~-------~V~~~d~~~~-~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGA-------KVILTDEKEE-DQLKEALEELGEL----GIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-------EEEEEeCCch-HHHHHHHHHHHhc----CCEEEeCCcchhHhhcCC
Confidence 3579999995 7799999999998775 8999998642 2222222223111 111211111124456899
Q ss_pred EEEEecCCCC
Q 017740 118 IAVMVGGFPR 127 (366)
Q Consensus 118 iVIi~aG~~~ 127 (366)
+||.++|.+.
T Consensus 71 ~vv~~~g~~~ 80 (450)
T PRK14106 71 LVVVSPGVPL 80 (450)
T ss_pred EEEECCCCCC
Confidence 9999988753
No 435
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.36 E-value=0.38 Score=47.43 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=40.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.+||+|+|.+|-+|..++..|.+.. + .+|+-+|..+ . ...+..+.+++||+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~----~~V~g~D~~d--------------~---------~~~~~~~~v~~aDl 54 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--Q----LEVIGHDPAD--------------P---------GSLDPATLLQRADV 54 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--C----CEEEEEcCCc--------------c---------ccCCHHHHhcCCCE
Confidence 4699999966999999999998641 2 1788888631 0 12345677899999
Q ss_pred EEEe
Q 017740 119 AVMV 122 (366)
Q Consensus 119 VIi~ 122 (366)
||++
T Consensus 55 Vila 58 (370)
T PRK08818 55 LIFS 58 (370)
T ss_pred EEEe
Confidence 9998
No 436
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.36 E-value=0.61 Score=42.73 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc----ch-HhhhhHHHHHhhhhcCCccceEEeCCHhhhh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP----AA-EALNGVKMELIDAAFPLLKGVVATTDVVEAC 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~----~~-~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al 113 (366)
..||+|+| +|..|..++..|...+.- +.++.++|++. ++ +.+......+.+.. .. .. ...++.+++
T Consensus 25 ~~rvlvlG-AGgAg~aiA~~L~~~G~~----~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~~l 95 (226)
T cd05311 25 EVKIVING-AGAAGIAIARLLLAAGAK----PENIVVVDSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKEAL 95 (226)
T ss_pred CCEEEEEC-chHHHHHHHHHHHHcCcC----cceEEEEeCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHHHH
Confidence 36999999 599999999999876541 12699999972 11 01111212221111 00 11 113677889
Q ss_pred CCCcEEEEecC
Q 017740 114 KDVNIAVMVGG 124 (366)
Q Consensus 114 ~~aDiVIi~aG 124 (366)
+++|++|-+.+
T Consensus 96 ~~~dvlIgaT~ 106 (226)
T cd05311 96 KGADVFIGVSR 106 (226)
T ss_pred hcCCEEEeCCC
Confidence 99999887754
No 437
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.35 E-value=0.11 Score=48.52 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=42.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEE-EEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVIL-HMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei-~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
+||+|+|++|.+|+.++..+...+- .++ .++|.+. +..... ....+..+.++.+.++++|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~------~elvav~d~~~--~~~~~~----------~~~~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAED------LELVAAVDRPG--SPLVGQ----------GALGVAITDDLEAVLADADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCC--cccccc----------CCCCccccCCHHHhccCCCE
Confidence 6999999769999999987765321 155 4678764 222211 11133446777777888999
Q ss_pred EEEe
Q 017740 119 AVMV 122 (366)
Q Consensus 119 VIi~ 122 (366)
||.+
T Consensus 64 Vid~ 67 (257)
T PRK00048 64 LIDF 67 (257)
T ss_pred EEEC
Confidence 8855
No 438
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=94.33 E-value=0.18 Score=46.66 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.7
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGAT--GQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.+.++||||+ +.||..++..|++.+. ++++.+.+
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~-------~v~~~~~~ 41 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGA-------ELGITYLP 41 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCC-------EEEEEecC
Confidence 3579999975 6899999999998664 67766543
No 439
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.33 E-value=0.16 Score=44.56 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=27.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
||+|+| +|.+|+.++..|++.++ + +++++|.+.
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGV-G-----NLKLVDFDV 33 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCC-C-----eEEEEeCCE
Confidence 689999 59999999999998765 2 789999864
No 440
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.31 E-value=0.12 Score=50.79 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=42.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
++|+|+||+|.+|+-+..+|+....+. ..+++++.... ..+...++.. ...........+.++++|++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~---~~~l~~~ss~~----sg~~~~~f~g-----~~~~v~~~~~~~~~~~~Div 69 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFD---LIEPVFFSTSQ----AGGAAPSFGG-----KEGTLQDAFDIDALKKLDII 69 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCC---cCcEEEecchh----hCCcccccCC-----CcceEEecCChhHhcCCCEE
Confidence 589999999999999998777654332 12577765431 1222212211 11111121213457899999
Q ss_pred EEecC
Q 017740 120 VMVGG 124 (366)
Q Consensus 120 Ii~aG 124 (366)
++++|
T Consensus 70 f~a~~ 74 (369)
T PRK06598 70 ITCQG 74 (369)
T ss_pred EECCC
Confidence 99864
No 441
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.30 E-value=0.13 Score=46.24 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
..||+|+| .|.+|+.++..|++.++ + +++++|.+
T Consensus 21 ~~~VlviG-~GglGs~ia~~La~~Gv-~-----~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIG-AGGLGSPAALYLAGAGV-G-----TIVIVDDD 54 (202)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEecCC
Confidence 46999999 69999999999998765 2 78899976
No 442
>PRK06046 alanine dehydrogenase; Validated
Probab=94.29 E-value=0.26 Score=47.72 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
...+|+|+| +|..|.+.+..+....-+ .++.++|++. ++++....++.+. ...++....+..++++ +|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i-----~~v~v~~r~~--~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEVFDL-----EEVRVYDRTK--SSAEKFVERMSSV---VGCDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhhCCc-----eEEEEECCCH--HHHHHHHHHHHhh---cCceEEEeCCHHHHhh-CC
Confidence 346899999 699999998877653222 2789999975 3444444444321 1223555677778887 99
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+.+-
T Consensus 196 iVv~aT 201 (326)
T PRK06046 196 ILVTTT 201 (326)
T ss_pred EEEEec
Confidence 999873
No 443
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.25 E-value=0.14 Score=51.17 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.+||+|+| +|.+|..++..|...+.. ++.+++++. ++....+..+.. ..+....++.+.+.++|+
T Consensus 181 ~kkvlviG-aG~~a~~va~~L~~~g~~------~I~V~nRt~--~ra~~La~~~~~------~~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIG-AGQTGELLFRHVTALAPK------QIMLANRTI--EKAQKITSAFRN------ASAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCC------EEEEECCCH--HHHHHHHHHhcC------CeEecHHHHHHHhccCCE
Confidence 36899999 599999999999876542 799999874 333333222211 122223566788999999
Q ss_pred EEEecCCCC
Q 017740 119 AVMVGGFPR 127 (366)
Q Consensus 119 VIi~aG~~~ 127 (366)
||.+-+.|.
T Consensus 246 VI~aT~a~~ 254 (414)
T PRK13940 246 IIAAVNVLE 254 (414)
T ss_pred EEECcCCCC
Confidence 999977765
No 444
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=94.24 E-value=0.16 Score=47.68 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=46.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||.+|| +|.+|++++.-|+..+... +.+|...++++ +.+. ++... ++. .+ +++..++..++|+|
T Consensus 2 ~~IgfIG-~G~Mg~Ai~~gl~~~g~~~---~~~I~v~~~~~--e~~~----~l~~~-~g~--~~--~~~~~~~~~~advv 66 (266)
T COG0345 2 MKIGFIG-AGNMGEAILSGLLKSGALP---PEEIIVTNRSE--EKRA----ALAAE-YGV--VT--TTDNQEAVEEADVV 66 (266)
T ss_pred ceEEEEc-cCHHHHHHHHHHHhcCCCC---cceEEEeCCCH--HHHH----HHHHH-cCC--cc--cCcHHHHHhhCCEE
Confidence 6899999 5999999999998866332 23788888764 3222 22111 111 11 66767889999999
Q ss_pred EEe
Q 017740 120 VMV 122 (366)
Q Consensus 120 Ii~ 122 (366)
+++
T Consensus 67 ~La 69 (266)
T COG0345 67 FLA 69 (266)
T ss_pred EEE
Confidence 998
No 445
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.23 E-value=0.17 Score=48.05 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-..++|+|+|+++.+|..++..|...+. ++..++.. |.++.+.+++|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga-------tVtv~~s~--------------------------t~~l~~~~~~A 202 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA-------SVTILHSR--------------------------SKDMASYLKDA 202 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC-------eEEEEeCC--------------------------chhHHHHHhhC
Confidence 3457999999756699999999987553 67777642 13567789999
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 203 DIVIsAvg~p~ 213 (286)
T PRK14175 203 DVIVSAVGKPG 213 (286)
T ss_pred CEEEECCCCCc
Confidence 99999988864
No 446
>PRK13529 malate dehydrogenase; Provisional
Probab=94.21 E-value=0.1 Score=53.55 Aligned_cols=120 Identities=17% Similarity=0.269 Sum_probs=72.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHh----cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCc---cce------EEe
Q 017740 40 CRVLVTGATGQIGYALVPMIAR----GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL---KGV------VAT 106 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~----~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~---~~v------~~t 106 (366)
.||++.| +|..|..++..|+. .++-..+.+.++.++|... .+.....|+.+...++. ... ...
T Consensus 296 ~riv~~G-AGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G---Ll~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~ 371 (563)
T PRK13529 296 QRIVFLG-AGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG---LLTDDMPDLLDFQKPYARKREELADWDTEGDV 371 (563)
T ss_pred cEEEEEC-CCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC---eEeCCCCcchHHHHHHhhhcccccccccccCC
Confidence 5999999 59999999998875 3332112234899999763 11111112222111111 111 123
Q ss_pred CCHhhhhCCC--cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCcc---hHHHHHHHH
Q 017740 107 TDVVEACKDV--NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPAN---TNALILKEF 178 (366)
Q Consensus 107 ~~l~~al~~a--DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv~---~~t~~~~~~ 178 (366)
.++.++++++ |+.|=+.+.+.. + ..++.+.|.+++ ++.+|.-.|||.. ....-+.+.
T Consensus 372 ~~L~e~v~~~kPtvLIG~S~~~g~--------F------t~evv~~Ma~~~-erPIIFaLSNPt~~aE~tpe~a~~~ 433 (563)
T PRK13529 372 ISLLEVVRNVKPTVLIGVSGQPGA--------F------TEEIVKEMAAHC-ERPIIFPLSNPTSRAEATPEDLIAW 433 (563)
T ss_pred CCHHHHHhccCCCEEEEecCCCCC--------C------CHHHHHHHHhcC-CCCEEEECCCcCCCcccCHHHHHHh
Confidence 5789999998 877755444321 1 236778888888 7778888999974 455555543
No 447
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=94.20 E-value=0.3 Score=47.04 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+| .|.||+.++..|..-+. ++..+|.... ... ... ......++.+.+++||
T Consensus 135 ~g~tvgIvG-~G~IG~~vA~~l~afG~-------~V~~~~~~~~--~~~----~~~--------~~~~~~~l~e~l~~aD 192 (312)
T PRK15469 135 EDFTIGILG-AGVLGSKVAQSLQTWGF-------PLRCWSRSRK--SWP----GVQ--------SFAGREELSAFLSQTR 192 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEeCCCC--CCC----Cce--------eecccccHHHHHhcCC
Confidence 347999999 79999999999986444 7888997531 101 000 0111246789999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+|+++. |..+ .+..++- .+.+.+. ++++.+|++++=
T Consensus 193 vvv~~l--Plt~---------~T~~li~--~~~l~~m-k~ga~lIN~aRG 228 (312)
T PRK15469 193 VLINLL--PNTP---------ETVGIIN--QQLLEQL-PDGAYLLNLARG 228 (312)
T ss_pred EEEECC--CCCH---------HHHHHhH--HHHHhcC-CCCcEEEECCCc
Confidence 999983 2211 1111221 3345554 478888888863
No 448
>PLN00016 RNA-binding protein; Provisional
Probab=94.18 E-value=0.061 Score=52.95 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCCEEEEE----cCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVT----GATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~Ii----GA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.++||+|| ||+|++|++++..|+..+. +|+.++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-------~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-------EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC-------EEEEEecCC
Confidence 45789999 9999999999999998765 788888764
No 449
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.14 E-value=0.12 Score=51.72 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..+|+|+| +|.+|..++..|...+.. ++.++|++. +++...+..+.. ......++.+++.++|+
T Consensus 180 ~~~VlViG-aG~iG~~~a~~L~~~G~~------~V~v~~rs~--~ra~~la~~~g~-------~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIG-AGEMGELVAKHLLRKGVG------KILIANRTY--ERAEDLAKELGG-------EAVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCC------EEEEEeCCH--HHHHHHHHHcCC-------eEeeHHHHHHHHhhCCE
Confidence 46999999 599999999999875532 789999864 333322222211 11122466788899999
Q ss_pred EEEecCCCC
Q 017740 119 AVMVGGFPR 127 (366)
Q Consensus 119 VIi~aG~~~ 127 (366)
||.+.|.|.
T Consensus 244 Vi~aT~s~~ 252 (417)
T TIGR01035 244 VISSTGAPH 252 (417)
T ss_pred EEECCCCCC
Confidence 999876654
No 450
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.14 E-value=0.15 Score=49.82 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
++||+|+||+|++|+.++..|...+. .+++.+..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~------~el~~~~~ 36 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW------FEVTALAA 36 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEEc
Confidence 37999999999999999998886433 27777743
No 451
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.13 E-value=0.5 Score=43.76 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGAT--GQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.+.++||||+ +.||..++..|++.+. ++++.+++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~-------~v~~~~r~ 42 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGA-------KLVFTYAG 42 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-------EEEEecCc
Confidence 4689999986 7999999999998664 67887754
No 452
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.09 E-value=0.24 Score=46.43 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=27.7
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGAT--GQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~--G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
.+.++||||+ +.||..++..|++.+. ++++.+++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~-------~V~l~~r~ 45 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGA-------ELAFTYQG 45 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-------EEEEEcCc
Confidence 3589999986 6899999999998765 67777654
No 453
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.06 E-value=0.16 Score=48.08 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+|.+|.+|..++.+|++.+. ++.++... +.++.+.+++||
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga-------tVtv~~s~--------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNA-------TVTLTHSR--------------------------TRNLAEVARKAD 203 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCC-------EEEEECCC--------------------------CCCHHHHHhhCC
Confidence 457999999889999999999987654 67776321 115677899999
Q ss_pred EEEEecCCCC
Q 017740 118 IAVMVGGFPR 127 (366)
Q Consensus 118 iVIi~aG~~~ 127 (366)
+||.+.|.|.
T Consensus 204 IVI~avg~~~ 213 (284)
T PRK14179 204 ILVVAIGRGH 213 (284)
T ss_pred EEEEecCccc
Confidence 9999988875
No 454
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=94.06 E-value=0.43 Score=40.24 Aligned_cols=115 Identities=15% Similarity=0.099 Sum_probs=58.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHH---HHHhhhhcC---CccceEEeCCHhhhh-
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVK---MELIDAAFP---LLKGVVATTDVVEAC- 113 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~---~dl~~~~~~---~~~~v~~t~~l~~al- 113 (366)
+++|+||+|++|.+++..|++.+.. .+.+.++++. ...... .++...... ...++.-..++.+.+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGAR------HLVLLSRSGP--DAPGAAELLAELEALGAEVTVVACDVADRAALAAALA 73 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCC------eEEEEeCCCC--CCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 6899999999999999999875431 4566665431 111111 122111000 000110001111221
Q ss_pred ------CCCcEEEEecCCCCCC---CCC---hhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEc
Q 017740 114 ------KDVNIAVMVGGFPRKE---GME---RKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165 (366)
Q Consensus 114 ------~~aDiVIi~aG~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~t 165 (366)
...|.+|..+|..... ..+ ....+..|+.....+.+.+.... + ..+++++
T Consensus 74 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~ii~~s 135 (180)
T smart00822 74 AIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLP-L-DFFVLFS 135 (180)
T ss_pred HHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCC-c-ceEEEEc
Confidence 2359999999864321 111 23446677777777777775532 3 3445444
No 455
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.05 E-value=0.2 Score=48.82 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
..||+|+| +|.+|++++..|++.++ + ++.++|.+.
T Consensus 24 ~~~VlIiG-~GglGs~va~~La~aGv-g-----~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVG-AGALGAANAEALVRAGI-G-----KLTIADRDY 58 (338)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCC-C-----EEEEEcCCc
Confidence 46899999 59999999999998765 2 788898763
No 456
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.99 E-value=0.19 Score=48.92 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
..||+|+| +|.+|+.++..|++.++ + ++.++|.+
T Consensus 24 ~~~VlVvG-~GglGs~va~~La~aGv-g-----~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIG-AGALGTANAEMLVRAGV-G-----KVTIVDRD 57 (339)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCC-C-----eEEEEeCC
Confidence 46999999 59999999999998765 2 79999986
No 457
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.93 E-value=0.21 Score=47.33 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=44.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-...+|+|+|.++.+|..++..|.+.+. .+.+++. -|.++.+.++.|
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~a-------tVt~~hs--------------------------~t~~l~~~~~~A 202 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA-------TVTICHS--------------------------KTRDLAAHTRQA 202 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEecC--------------------------CCCCHHHHhhhC
Confidence 3457999999888889999999987543 5655432 134677889999
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 203 DIVV~avG~~~ 213 (285)
T PRK14189 203 DIVVAAVGKRN 213 (285)
T ss_pred CEEEEcCCCcC
Confidence 99999988654
No 458
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=93.90 E-value=0.18 Score=51.82 Aligned_cols=120 Identities=11% Similarity=0.139 Sum_probs=72.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHh----cccCCCCCCeEEEEEeCccchHhhhhHHHH-HhhhhcCCcc-----ceEEeCCH
Q 017740 40 CRVLVTGATGQIGYALVPMIAR----GIMLGPDQPVILHMLDIEPAAEALNGVKME-LIDAAFPLLK-----GVVATTDV 109 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~----~~~~~~~~~~ei~L~D~~~~~~~l~~~~~d-l~~~~~~~~~-----~v~~t~~l 109 (366)
.||++.| +|..|..++..|+. .++...+.+.++.++|... .+.....| +.+...++.+ .-....++
T Consensus 298 ~riv~~G-AGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G---Ll~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L 373 (559)
T PTZ00317 298 QRIVFFG-AGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG---LVTTTRGDKLAKHKVPFARTDISAEDSSLKTL 373 (559)
T ss_pred cEEEEEC-CCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC---eEeCCCCccccHHHHHHhccccccccccCCCH
Confidence 5999999 59999999988864 3332112234899999753 22111111 2111111111 10113689
Q ss_pred hhhhCCC--cEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCc---chHHHHHHHH
Q 017740 110 VEACKDV--NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA---NTNALILKEF 178 (366)
Q Consensus 110 ~~al~~a--DiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv---~~~t~~~~~~ 178 (366)
.++++++ |++|=+.|.+.. + .+++.+.|.+++ +..+|.-.|||. +....-+.+.
T Consensus 374 ~e~v~~~KPtvLIG~S~~~g~--------F------t~evv~~Ma~~~-~rPIIFaLSNPt~~aE~tpeda~~~ 432 (559)
T PTZ00317 374 EDVVRFVKPTALLGLSGVGGV--------F------TEEVVKTMASNV-ERPIIFPLSNPTSKAECTAEDAYKW 432 (559)
T ss_pred HHHHhccCCCEEEEecCCCCC--------C------CHHHHHHHHhcC-CCCEEEECCCCCCCCCcCHHHHHhh
Confidence 9999999 887755444321 1 236778888888 778888899997 5565555554
No 459
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.90 E-value=0.16 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhc
Q 017740 40 CRVLVTGATGQIGYALVPMIARG 62 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~ 62 (366)
+||+|+||+|.+|..++..|...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~ 25 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH 25 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC
Confidence 69999999999999999988764
No 460
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=93.90 E-value=0.32 Score=47.10 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
...++||| +|..+...+..+..-.-+ .+|++|++++ +..+..+.++... ....+....+.++++++||+
T Consensus 130 a~~laiIG-aG~qA~~ql~a~~~v~~~-----~~I~i~~r~~--~~~e~~a~~l~~~---~~~~v~a~~s~~~av~~aDi 198 (330)
T COG2423 130 ASTLAIIG-AGAQARTQLEALKAVRDI-----REIRVYSRDP--EAAEAFAARLRKR---GGEAVGAADSAEEAVEGADI 198 (330)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhhCCc-----cEEEEEcCCH--HHHHHHHHHHHhh---cCccceeccCHHHHhhcCCE
Confidence 35799999 699988887777652211 2899999985 4455555555432 22245667788999999999
Q ss_pred EEEe
Q 017740 119 AVMV 122 (366)
Q Consensus 119 VIi~ 122 (366)
|+-+
T Consensus 199 Ivt~ 202 (330)
T COG2423 199 VVTA 202 (330)
T ss_pred EEEe
Confidence 9877
No 461
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.74 E-value=0.17 Score=49.42 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=41.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEE-EEeCccchHhhhhHHHHHhhhhcCCccceEEe-CCHhhhhCCCc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILH-MLDIEPAAEALNGVKMELIDAAFPLLKGVVAT-TDVVEACKDVN 117 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~-L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t-~~l~~al~~aD 117 (366)
+||+|+||+|.+|..++..|...+.. +++ +++.+.. .+....-.+............ .+..+.++++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~------el~~l~~s~~s----agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV------EITYLVSSRES----AGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDAD 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc------eEEEEeccchh----cCCChHHhCccccccCCceeecCCHHHhhcCCC
Confidence 48999999999999999998865332 666 6675431 122111001100111111222 24344446899
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+++.
T Consensus 71 vVf~al 76 (346)
T TIGR01850 71 VVFLAL 76 (346)
T ss_pred EEEECC
Confidence 999984
No 462
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.73 E-value=0.19 Score=50.40 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..+|+|+| +|.+|..++..|...+.. ++.+++++. +++...+.++. ..+....++.+++.++|+
T Consensus 182 ~~~vlViG-aG~iG~~~a~~L~~~G~~------~V~v~~r~~--~ra~~la~~~g-------~~~~~~~~~~~~l~~aDv 245 (423)
T PRK00045 182 GKKVLVIG-AGEMGELVAKHLAEKGVR------KITVANRTL--ERAEELAEEFG-------GEAIPLDELPEALAEADI 245 (423)
T ss_pred CCEEEEEC-chHHHHHHHHHHHHCCCC------eEEEEeCCH--HHHHHHHHHcC-------CcEeeHHHHHHHhccCCE
Confidence 47999999 599999999988765431 789999864 33332222221 112222456678899999
Q ss_pred EEEecCCCC
Q 017740 119 AVMVGGFPR 127 (366)
Q Consensus 119 VIi~aG~~~ 127 (366)
||.+.|.|.
T Consensus 246 VI~aT~s~~ 254 (423)
T PRK00045 246 VISSTGAPH 254 (423)
T ss_pred EEECCCCCC
Confidence 999876654
No 463
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.71 E-value=0.56 Score=43.43 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=26.9
Q ss_pred CEEEEEcCCC--chHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 40 CRVLVTGATG--QIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 40 ~KI~IiGA~G--~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
+.++||||++ .||.+++..|+..+. ++++.+++
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~-------~v~~~~r~ 43 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGA-------ELWFTYQS 43 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCC-------EEEEEeCc
Confidence 5789999876 699999999987664 67887765
No 464
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.68 E-value=0.91 Score=45.57 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc
Q 017740 18 CVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 97 (366)
Q Consensus 18 ~~~~~~~~~~~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~ 97 (366)
|.--.|.-+.++.... ....+|+|+| .|.+|..++..|...+. ++..+|+++. +...... +. +
T Consensus 194 t~~s~~~ai~rat~~~---l~Gk~VlViG-~G~IG~~vA~~lr~~Ga-------~ViV~d~dp~--ra~~A~~---~G-~ 256 (425)
T PRK05476 194 TGESLLDGIKRATNVL---IAGKVVVVAG-YGDVGKGCAQRLRGLGA-------RVIVTEVDPI--CALQAAM---DG-F 256 (425)
T ss_pred HHhhhHHHHHHhccCC---CCCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEEcCCch--hhHHHHh---cC-C
Confidence 4445566555553321 2346999999 59999999999887554 7899998752 2111111 11 1
Q ss_pred CCccceEEeCCHhhhhCCCcEEEEecC
Q 017740 98 PLLKGVVATTDVVEACKDVNIAVMVGG 124 (366)
Q Consensus 98 ~~~~~v~~t~~l~~al~~aDiVIi~aG 124 (366)
. ..++.++++++|+||.+.|
T Consensus 257 ------~-v~~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 257 ------R-VMTMEEAAELGDIFVTATG 276 (425)
T ss_pred ------E-ecCHHHHHhCCCEEEECCC
Confidence 1 1245678899999987754
No 465
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=93.63 E-value=0.42 Score=51.43 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=45.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
.||+|+| .|.+|..++..|...+.. .++..+|+++ +.++ ...+. . . ......+..++++++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~-----~~V~~~d~~~--~~~~-~a~~~--g-~----~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLA-----REVVAVDRRA--KSLE-LAVSL--G-V----IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC-----CEEEEEECCh--hHHH-HHHHC--C-C----CCcccCCHHHHhcCCCEE
Confidence 5899999 699999999999875531 1688999874 2222 11111 1 0 011234667788999999
Q ss_pred EEec
Q 017740 120 VMVG 123 (366)
Q Consensus 120 Ii~a 123 (366)
+++.
T Consensus 68 ilav 71 (735)
T PRK14806 68 VLAV 71 (735)
T ss_pred EECC
Confidence 9983
No 466
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=93.62 E-value=0.28 Score=45.15 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=31.5
Q ss_pred EEEEEcCCCchHHHHHHHHHh----cccCCCCCCeEEEEEeCccchHhhhhHHHHH
Q 017740 41 RVLVTGATGQIGYALVPMIAR----GIMLGPDQPVILHMLDIEPAAEALNGVKMEL 92 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~----~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl 92 (366)
.++||||+|.+|..++..|++ .+. .|++.++++ +.++....++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-------~V~~~~r~~--~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-------VLVLSARND--EALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-------EEEEEEcCH--HHHHHHHHHH
Confidence 488999999999999999985 232 788888864 3444444444
No 467
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=93.62 E-value=0.46 Score=54.74 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchH-hhhhHHHHHhhhhc--C-CccceEE-eC------
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAE-ALNGVKMELIDAAF--P-LLKGVVA-TT------ 107 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~-~l~~~~~dl~~~~~--~-~~~~v~~-t~------ 107 (366)
+++|+||||+|++|++++..|+..+-. ...+++...+..... ........+..... . ...++.. ..
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~---~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~ 1047 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSN---SNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEK 1047 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCC---CCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCcc
Confidence 578999999999999999999865310 012565555543211 11111000000000 0 0011111 11
Q ss_pred ------CHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhh
Q 017740 108 ------DVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 154 (366)
Q Consensus 108 ------~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~ 154 (366)
.+.+..+++|+||++|+... ...+...+...|+....++.+.+.+.
T Consensus 1048 lgl~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~ 1099 (1389)
T TIGR03443 1048 FGLSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEG 1099 (1389)
T ss_pred CCcCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhC
Confidence 12334568999999987543 12334445557898889999888765
No 468
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.59 E-value=0.28 Score=46.48 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+|-+..+|..++..|+..+. .+.+++.. |.++.+.++.||
T Consensus 158 ~Gk~vvViGrs~iVG~Pla~lL~~~~a-------tVtv~hs~--------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 158 YGLNAVVVGASNIVGRPMSLELLLAGC-------TVTVCHRF--------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCC-------eEEEEECC--------------------------CCCHHHHHhhCC
Confidence 457999999777799999999987543 67777642 346778899999
Q ss_pred EEEEecCCCC
Q 017740 118 IAVMVGGFPR 127 (366)
Q Consensus 118 iVIi~aG~~~ 127 (366)
+||.+.|.|.
T Consensus 205 Ivi~avG~p~ 214 (285)
T PRK10792 205 LLVVAVGKPG 214 (285)
T ss_pred EEEEcCCCcc
Confidence 9999998876
No 469
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.40 E-value=0.21 Score=47.37 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-..++|+|+|.+..||..++..|++.+. .+.++... |.++.+.+++|
T Consensus 153 l~Gk~vvViGrS~iVGkPla~lL~~~~a-------TVtichs~--------------------------T~~l~~~~~~A 199 (287)
T PRK14173 153 LAGKEVVVVGRSNIVGKPLAALLLREDA-------TVTLAHSK--------------------------TQDLPAVTRRA 199 (287)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEeCCC--------------------------CCCHHHHHhhC
Confidence 3457999999999999999999987543 56655421 23567788999
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 200 DIvIsAvGkp~ 210 (287)
T PRK14173 200 DVLVVAVGRPH 210 (287)
T ss_pred CEEEEecCCcC
Confidence 99999998875
No 470
>PLN03139 formate dehydrogenase; Provisional
Probab=93.40 E-value=0.73 Score=45.69 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+| .|.||+.++..|..-+. ++..+|..... .... .+. ++....++.+.+++||
T Consensus 198 ~gktVGIVG-~G~IG~~vA~~L~afG~-------~V~~~d~~~~~---~~~~---~~~------g~~~~~~l~ell~~sD 257 (386)
T PLN03139 198 EGKTVGTVG-AGRIGRLLLQRLKPFNC-------NLLYHDRLKMD---PELE---KET------GAKFEEDLDAMLPKCD 257 (386)
T ss_pred CCCEEEEEe-ecHHHHHHHHHHHHCCC-------EEEEECCCCcc---hhhH---hhc------CceecCCHHHHHhhCC
Confidence 457999999 79999999999976443 78889975311 1110 111 1223357888999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+|++.. |..+ +...++ | .+.+... ++++.+|++++=
T Consensus 258 vV~l~l--Plt~--~T~~li--~-------~~~l~~m-k~ga~lIN~aRG 293 (386)
T PLN03139 258 VVVINT--PLTE--KTRGMF--N-------KERIAKM-KKGVLIVNNARG 293 (386)
T ss_pred EEEEeC--CCCH--HHHHHh--C-------HHHHhhC-CCCeEEEECCCC
Confidence 999983 3211 111111 1 2344444 478888888863
No 471
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.36 E-value=0.25 Score=46.78 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh--cccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCC
Q 017740 38 EPCRVLVTGATGQIGYALVPMIAR--GIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD 115 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~--~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~ 115 (366)
..++|+|+|.+..+|..++..|++ .+. .+.+++.. |.++.+.++.
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~a-------tVtvchs~--------------------------T~~l~~~~k~ 203 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSENA-------TVTLCHTG--------------------------TRDLAAHTRR 203 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCCC-------EEEEeCCC--------------------------CCCHHHHHHh
Confidence 457999999999999999999986 232 55555421 3567788999
Q ss_pred CcEEEEecCCCC
Q 017740 116 VNIAVMVGGFPR 127 (366)
Q Consensus 116 aDiVIi~aG~~~ 127 (366)
||+||.+.|.|.
T Consensus 204 ADIvV~AvGkp~ 215 (284)
T PRK14193 204 ADIIVAAAGVAH 215 (284)
T ss_pred CCEEEEecCCcC
Confidence 999999999875
No 472
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.35 E-value=0.45 Score=43.32 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIA 119 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiV 119 (366)
+||.++| .|.||..++..+..+.. +. .-+.+||.+. +++. .+.... .. ...+++.+.+++.|++
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~-~~---e~v~v~D~~~--ek~~----~~~~~~---~~--~~~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRV-DF---ELVAVYDRDE--EKAK----ELEASV---GR--RCVSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCc-ce---eEEEEecCCH--HHHH----HHHhhc---CC--CccccHHHHhhcccee
Confidence 4899999 69999999888776542 11 1457899874 3222 222211 11 1126777777999999
Q ss_pred EEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCCc
Q 017740 120 VMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPA 168 (366)
Q Consensus 120 Ii~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNPv 168 (366)
|-+|+. +.+++++.++-+.+ .|++|+-++--+
T Consensus 65 VEaAS~----------------~Av~e~~~~~L~~g-~d~iV~SVGALa 96 (255)
T COG1712 65 VEAASP----------------EAVREYVPKILKAG-IDVIVMSVGALA 96 (255)
T ss_pred eeeCCH----------------HHHHHHhHHHHhcC-CCEEEEechhcc
Confidence 988632 33677888887765 676655444444
No 473
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.31 E-value=0.11 Score=43.29 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=28.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
.||+|+| +|.+|+.++..|++.++ + ++.++|.+.
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv-~-----~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGV-G-----KITLVDDDI 36 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTT-S-----EEEEEESSB
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCC-C-----ceeecCCcc
Confidence 6999999 69999999999998765 2 899999763
No 474
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.30 E-value=0.41 Score=41.47 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++++|+| -|.+|+.+|..|...+. ++..+|+++- ..++ ..+ +. +.. ..+.++++.+|
T Consensus 22 ~Gk~vvV~G-YG~vG~g~A~~lr~~Ga-------~V~V~e~DPi-~alq-A~~---dG-------f~v-~~~~~a~~~ad 80 (162)
T PF00670_consen 22 AGKRVVVIG-YGKVGKGIARALRGLGA-------RVTVTEIDPI-RALQ-AAM---DG-------FEV-MTLEEALRDAD 80 (162)
T ss_dssp TTSEEEEE---SHHHHHHHHHHHHTT--------EEEEE-SSHH-HHHH-HHH---TT--------EE-E-HHHHTTT-S
T ss_pred CCCEEEEeC-CCcccHHHHHHHhhCCC-------EEEEEECChH-HHHH-hhh---cC-------cEe-cCHHHHHhhCC
Confidence 357899999 79999999999987654 8999999862 1222 111 11 122 35788999999
Q ss_pred EEEEecCCC
Q 017740 118 IAVMVGGFP 126 (366)
Q Consensus 118 iVIi~aG~~ 126 (366)
++|.+-|..
T Consensus 81 i~vtaTG~~ 89 (162)
T PF00670_consen 81 IFVTATGNK 89 (162)
T ss_dssp EEEE-SSSS
T ss_pred EEEECCCCc
Confidence 988876653
No 475
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.29 E-value=0.3 Score=47.05 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
.+||+||| .|.+|.+++..|...++ +++.++.... +... .+... .+..+ +..+++++||+
T Consensus 3 ~kkIgiIG-~G~mG~AiA~~L~~sG~-------~Viv~~~~~~-~~~~----~a~~~------Gv~~~-s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIG-YGSQGHAQALNLRDSGL-------NVIVGLRKGG-ASWK----KATED------GFKVG-TVEEAIPQADL 62 (314)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCCC-------eEEEEECcCh-hhHH----HHHHC------CCEEC-CHHHHHhcCCE
Confidence 46899999 69999999999987654 5655554321 1111 11111 12223 46778999999
Q ss_pred EEEe
Q 017740 119 AVMV 122 (366)
Q Consensus 119 VIi~ 122 (366)
|+++
T Consensus 63 VvLa 66 (314)
T TIGR00465 63 IMNL 66 (314)
T ss_pred EEEe
Confidence 9998
No 476
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.26 E-value=0.26 Score=44.65 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIE 79 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~ 79 (366)
..||+|+| +|.+|+.++..|++.++ + ++.++|.+
T Consensus 28 ~~~V~ViG-~GglGs~ia~~La~~Gv-g-----~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAG-AGGLGSNIAVALARSGV-G-----NLKLVDFD 61 (212)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHcCC-C-----eEEEEeCC
Confidence 46899999 59999999999998765 2 78888876
No 477
>PLN00203 glutamyl-tRNA reductase
Probab=93.25 E-value=0.25 Score=50.93 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..+|+|+| +|.+|..++..|...+.. ++.+++++. +++......+... ...+....++.+++.++|+
T Consensus 266 ~kkVlVIG-AG~mG~~~a~~L~~~G~~------~V~V~nRs~--era~~La~~~~g~----~i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIG-AGKMGKLLVKHLVSKGCT------KMVVVNRSE--ERVAALREEFPDV----EIIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEe-CHHHHHHHHHHHHhCCCC------eEEEEeCCH--HHHHHHHHHhCCC----ceEeecHhhHHHHHhcCCE
Confidence 47999999 599999999998865531 689999874 3333322222110 0012223466788999999
Q ss_pred EEEecCCC
Q 017740 119 AVMVGGFP 126 (366)
Q Consensus 119 VIi~aG~~ 126 (366)
||.+-+.+
T Consensus 333 VIsAT~s~ 340 (519)
T PLN00203 333 VFTSTSSE 340 (519)
T ss_pred EEEccCCC
Confidence 88875543
No 478
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.25 E-value=0.28 Score=46.76 Aligned_cols=57 Identities=16% Similarity=0.329 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|+|+|.+|.+|..++.+|+..+. ++.+++... . ++.+.++.||
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~-------tVtv~~~rT-----~---------------------~l~e~~~~AD 203 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANA-------TVTIAHSRT-----R---------------------DLPAVCRRAD 203 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCC-------EEEEECCCC-----C---------------------CHHHHHhcCC
Confidence 457999999999999999999997665 788886321 1 2467788999
Q ss_pred EEEEecCCCC
Q 017740 118 IAVMVGGFPR 127 (366)
Q Consensus 118 iVIi~aG~~~ 127 (366)
+||.+.|.|.
T Consensus 204 IVIsavg~~~ 213 (296)
T PRK14188 204 ILVAAVGRPE 213 (296)
T ss_pred EEEEecCChh
Confidence 9999977754
No 479
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.21 E-value=0.24 Score=48.14 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..+||+|+||+|.+|..+...|....+ +..++.++..+.. .|....+.. .++.+......++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h----P~~~l~~laS~~s----aG~~~~~~~------~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF----PVGELYALASEES----AGETLRFGG------KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC----CceEEEEEEccCc----CCceEEECC------cceEEEeCchhhccCCC
Confidence 357999999999999999998887422 1127777754321 222222211 13333321123447889
Q ss_pred EEEEecC
Q 017740 118 IAVMVGG 124 (366)
Q Consensus 118 iVIi~aG 124 (366)
+++++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9988753
No 480
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.17 E-value=1.2 Score=44.47 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc
Q 017740 18 CVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 97 (366)
Q Consensus 18 ~~~~~~~~~~~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~ 97 (366)
|+--.|..+-++.+.+ ....+|+|+| .|.+|..++..+...+. ++..+|.++. +.. .+. .+. +
T Consensus 177 ~g~s~~~~i~r~t~~~---l~Gk~VvViG-~G~IG~~vA~~ak~~Ga-------~ViV~d~dp~--r~~-~A~--~~G-~ 239 (406)
T TIGR00936 177 TGQSTIDGILRATNLL---IAGKTVVVAG-YGWCGKGIAMRARGMGA-------RVIVTEVDPI--RAL-EAA--MDG-F 239 (406)
T ss_pred cchhHHHHHHHhcCCC---CCcCEEEEEC-CCHHHHHHHHHHhhCcC-------EEEEEeCChh--hHH-HHH--hcC-C
Confidence 3333555555554431 2346999999 69999999998876544 7888998752 111 111 111 1
Q ss_pred CCccceEEeCCHhhhhCCCcEEEEecC
Q 017740 98 PLLKGVVATTDVVEACKDVNIAVMVGG 124 (366)
Q Consensus 98 ~~~~~v~~t~~l~~al~~aDiVIi~aG 124 (366)
.. .++.++++++|+||.+.|
T Consensus 240 ------~v-~~leeal~~aDVVItaTG 259 (406)
T TIGR00936 240 ------RV-MTMEEAAKIGDIFITATG 259 (406)
T ss_pred ------Ee-CCHHHHHhcCCEEEECCC
Confidence 11 234678899999987644
No 481
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.15 E-value=0.77 Score=42.54 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhcccCCCCCCeEEEEEeC
Q 017740 39 PCRVLVTGA--TGQIGYALVPMIARGIMLGPDQPVILHMLDI 78 (366)
Q Consensus 39 ~~KI~IiGA--~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~ 78 (366)
.+.++|||| ++.||.+++..|++.+. ++++.++
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-------~v~~~~~ 40 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-------ELAFTYV 40 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-------eEEEEcc
Confidence 357999996 46899999999998664 6777764
No 482
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.11 E-value=0.32 Score=46.07 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-..++|+|+|.+..+|..++..|+..+. .+.+++.. |.|+.+.+++|
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~a-------tVtv~hs~--------------------------T~~l~~~~~~A 208 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNA-------TVSVCHVF--------------------------TDDLKKYTLDA 208 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCC-------EEEEEecc--------------------------CCCHHHHHhhC
Confidence 3467999999877799999999987543 66666632 23566778999
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 209 DIvv~AvG~p~ 219 (287)
T PRK14176 209 DILVVATGVKH 219 (287)
T ss_pred CEEEEccCCcc
Confidence 99999999875
No 483
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.09 E-value=0.56 Score=42.07 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCcc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEP 80 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~ 80 (366)
..++|+|+| .|.+|++++..|.+.+. +++.+|.++
T Consensus 27 ~gk~v~I~G-~G~vG~~~A~~L~~~G~-------~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQG-LGKVGYKLAEHLLEEGA-------KLIVADINE 61 (200)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEcCCH
Confidence 347899999 69999999999988665 788999864
No 484
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.08 E-value=0.46 Score=49.95 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhh-----hh
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVE-----AC 113 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~-----al 113 (366)
..+|.|+| .|.+|+.++..|...+. +++.+|.|+ ++.+ .+.+... .-+.+.....+ -+
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~-------~vvvID~d~--~~v~----~~~~~g~---~v~~GDat~~~~L~~agi 462 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANKM-------RITVLERDI--SAVN----LMRKYGY---KVYYGDATQLELLRAAGA 462 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCCC-------CEEEEECCH--HHHH----HHHhCCC---eEEEeeCCCHHHHHhcCC
Confidence 36899999 69999999999987655 789999875 3332 2222111 11222211122 35
Q ss_pred CCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEE-EcCCcchHHHHHHHHCCCCCCCceeeccc
Q 017740 114 KDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLV-VANPANTNALILKEFAPSIPAKNITCLTR 192 (366)
Q Consensus 114 ~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv-~tNPv~~~t~~~~~~~s~~~~~ki~~gt~ 192 (366)
++||.+|++-+.+ ..|. .++..++++. |+.++++ +.||.+. ..+.+. |- +.+.--|.
T Consensus 463 ~~A~~vv~~~~d~-----------~~n~----~i~~~~r~~~-p~~~IiaRa~~~~~~--~~L~~~--Ga--~~vv~e~~ 520 (601)
T PRK03659 463 EKAEAIVITCNEP-----------EDTM----KIVELCQQHF-PHLHILARARGRVEA--HELLQA--GV--TQFSRETF 520 (601)
T ss_pred ccCCEEEEEeCCH-----------HHHH----HHHHHHHHHC-CCCeEEEEeCCHHHH--HHHHhC--CC--CEEEccHH
Confidence 6888888883221 1233 3555677776 8877655 5555433 334332 32 33433334
Q ss_pred chHHHHHHHHHHHhCCCCCCeee
Q 017740 193 LDHNRAMGQISERLKVHVSDVKN 215 (366)
Q Consensus 193 lds~R~~~~la~~l~v~~~~v~~ 215 (366)
.-+..+-...-..+|+++.+++.
T Consensus 521 es~l~l~~~~L~~lg~~~~~~~~ 543 (601)
T PRK03659 521 SSALELGRKTLVSLGMHPHQAQR 543 (601)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Confidence 44556666777788888877753
No 485
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.05 E-value=0.27 Score=46.54 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-..++|+|+|.+..||..++..|++.+. .+.+++.. |.++.+.++.|
T Consensus 156 l~Gk~vvViGrS~iVG~Pla~lL~~~~a-------tVt~chs~--------------------------t~~l~~~~~~A 202 (284)
T PRK14190 156 ISGKHVVVVGRSNIVGKPVGQLLLNENA-------TVTYCHSK--------------------------TKNLAELTKQA 202 (284)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-------EEEEEeCC--------------------------chhHHHHHHhC
Confidence 3457999999999999999999987543 56666421 23677789999
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 203 DIvI~AvG~p~ 213 (284)
T PRK14190 203 DILIVAVGKPK 213 (284)
T ss_pred CEEEEecCCCC
Confidence 99999988875
No 486
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=93.04 E-value=0.18 Score=49.14 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=41.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEE
Q 017740 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAV 120 (366)
Q Consensus 41 KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVI 120 (366)
||+|+||+|.+|..++..|...++ +..+++++..... .+....+. . .++....-..++++++|+|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h----p~~~l~~~as~~~----~g~~~~~~-----~-~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF----PIDKLVLLASDRS----AGRKVTFK-----G-KELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC----ChhhEEEEecccc----CCCeeeeC-----C-eeEEEEeCChHHhcCCCEEE
Confidence 689999999999999998876432 1126666654321 12222111 1 12222211134578899999
Q ss_pred EecCC
Q 017740 121 MVGGF 125 (366)
Q Consensus 121 i~aG~ 125 (366)
++.|.
T Consensus 67 ~a~g~ 71 (339)
T TIGR01296 67 FSAGG 71 (339)
T ss_pred ECCCH
Confidence 98653
No 487
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.00 E-value=1.2 Score=44.48 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc
Q 017740 18 CVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 97 (366)
Q Consensus 18 ~~~~~~~~~~~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~ 97 (366)
|+--.|.-+-+.-+. .....+|+|+| .|.+|..++..+...+. ++..+|.++. ++. .+..+ . +
T Consensus 184 ~g~s~~~~i~r~t~~---~l~GktVvViG-~G~IG~~va~~ak~~Ga-------~ViV~d~d~~--R~~-~A~~~--G-~ 246 (413)
T cd00401 184 CRESLIDGIKRATDV---MIAGKVAVVAG-YGDVGKGCAQSLRGQGA-------RVIVTEVDPI--CAL-QAAME--G-Y 246 (413)
T ss_pred hchhhHHHHHHhcCC---CCCCCEEEEEC-CCHHHHHHHHHHHHCCC-------EEEEEECChh--hHH-HHHhc--C-C
Confidence 344445444443332 12347999999 59999999998876554 6788998752 222 22111 1 0
Q ss_pred CCccceEEeCCHhhhhCCCcEEEEecCCCCCCCCChhHHHhhhHHHHHHHHHH-HHhhcCCCcEEEEEcCC
Q 017740 98 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA-LEKHAAPNCKVLVVANP 167 (366)
Q Consensus 98 ~~~~~v~~t~~l~~al~~aDiVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~-i~~~~~~~~~viv~tNP 167 (366)
.. .+..++++++|+||.+.|.+. . +... +... ++++++++++.+
T Consensus 247 ------~~-~~~~e~v~~aDVVI~atG~~~---------------~---i~~~~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 247 ------EV-MTMEEAVKEGDIFVTTTGNKD---------------I---ITGEHFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred ------EE-ccHHHHHcCCCEEEECCCCHH---------------H---HHHHHHhcC-CCCcEEEEeCCC
Confidence 11 134577899999998755421 1 1122 3333 467888888864
No 488
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=92.97 E-value=0.38 Score=45.16 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=43.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhcccCCCCCCeE-EEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~e-i~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
+||+|+| .|.+|..++..+.+.+. + .+ +.++|.+. ++.. ++.+. . ......++.+.+.++|+
T Consensus 2 mrIgIIG-~G~iG~~ia~~l~~~~~-~----~elv~v~d~~~--~~a~----~~a~~---~--~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 2 LKIGIVG-CGAIASLITKAILSGRI-N----AELYAFYDRNL--EKAE----NLASK---T--GAKACLSIDELVEDVDL 64 (265)
T ss_pred CEEEEEC-ccHHHHHHHHHHHcCCC-C----eEEEEEECCCH--HHHH----HHHHh---c--CCeeECCHHHHhcCCCE
Confidence 5999999 69999999998876431 1 14 46788864 2222 12111 0 12345677776789999
Q ss_pred EEEec
Q 017740 119 AVMVG 123 (366)
Q Consensus 119 VIi~a 123 (366)
|++++
T Consensus 65 Vvi~a 69 (265)
T PRK13304 65 VVECA 69 (265)
T ss_pred EEEcC
Confidence 99985
No 489
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.97 E-value=0.34 Score=48.25 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=53.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..||+|+| +|-+|.-.+..|...++. +|.+.++.. +++...+..+. ..+.--.++.+.+.++|+
T Consensus 178 ~~~vlvIG-AGem~~lva~~L~~~g~~------~i~IaNRT~--erA~~La~~~~-------~~~~~l~el~~~l~~~Dv 241 (414)
T COG0373 178 DKKVLVIG-AGEMGELVAKHLAEKGVK------KITIANRTL--ERAEELAKKLG-------AEAVALEELLEALAEADV 241 (414)
T ss_pred cCeEEEEc-ccHHHHHHHHHHHhCCCC------EEEEEcCCH--HHHHHHHHHhC-------CeeecHHHHHHhhhhCCE
Confidence 46899999 599999999999987763 788888863 44443343332 222334577889999999
Q ss_pred EEEecCCCC
Q 017740 119 AVMVGGFPR 127 (366)
Q Consensus 119 VIi~aG~~~ 127 (366)
||.+-|.|.
T Consensus 242 VissTsa~~ 250 (414)
T COG0373 242 VISSTSAPH 250 (414)
T ss_pred EEEecCCCc
Confidence 999877765
No 490
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=92.96 E-value=1.5 Score=42.90 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcEEEEe
Q 017740 51 IGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMV 122 (366)
Q Consensus 51 vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDiVIi~ 122 (366)
-|..++..|++.+. +++++|+++ +.+.....+... ...+..+++..+++++||+||++
T Consensus 31 gG~~MA~~La~aG~-------~V~v~Dr~~--~~l~~~~~~~l~-----~~Gi~~asd~~eaa~~ADvVIla 88 (342)
T PRK12557 31 GGSRMAIEFAEAGH-------DVVLAEPNR--SILSEELWKKVE-----DAGVKVVSDDAEAAKHGEIHILF 88 (342)
T ss_pred CHHHHHHHHHhCCC-------eEEEEECCH--HHhhHHHHHHHH-----HCCCEEeCCHHHHHhCCCEEEEE
Confidence 47778888877554 799999864 222211111111 12345566777889999999998
No 491
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.88 E-value=2.6 Score=40.31 Aligned_cols=145 Identities=21% Similarity=0.265 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHH
Q 017740 12 ILVVLFCVALFWKIIRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME 91 (366)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~d 91 (366)
-+.+.||++..-..--.+-+|---++..++|+|+|++..+|..++..+...+. .+.+.-++. +++++....
T Consensus 6 ~~~i~~i~~~~~~~~~~~~~~~~~~k~~~hi~itggS~glgl~la~e~~~~ga-------~Vti~ar~~--~kl~~a~~~ 76 (331)
T KOG1210|consen 6 LLFIAFIVGIVHLLLLDHRSFIVKPKPRRHILITGGSSGLGLALALECKREGA-------DVTITARSG--KKLLEAKAE 76 (331)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhcccCccceEEEecCcchhhHHHHHHHHHccC-------ceEEEeccH--HHHHHHHhh
Confidence 34455666555333222223322234447999999999999999999987654 466666543 455544444
Q ss_pred Hhhhhc-C----CccceEEe---CCHhhhhC----CCcEEEEecCCCC--CC-CCC---hhHHHhhh----HHHHHHHHH
Q 017740 92 LIDAAF-P----LLKGVVAT---TDVVEACK----DVNIAVMVGGFPR--KE-GME---RKDVMSKN----VSIYKAQAS 149 (366)
Q Consensus 92 l~~~~~-~----~~~~v~~t---~~l~~al~----~aDiVIi~aG~~~--~~-g~~---r~~~~~~n----~~~~~~i~~ 149 (366)
++.... . ...++... ....+.++ .-|.++.+||..- .. +.+ -..+...| +.+.++.+.
T Consensus 77 l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~ 156 (331)
T KOG1210|consen 77 LELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAAR 156 (331)
T ss_pred hhhhhccceeeEeccccccHHHHHHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 432211 1 01122111 12223343 3477888888632 11 111 11122222 455677777
Q ss_pred HHHhhcCCCcEEEEEcC
Q 017740 150 ALEKHAAPNCKVLVVAN 166 (366)
Q Consensus 150 ~i~~~~~~~~~viv~tN 166 (366)
.+.+-+ +.+.++.++.
T Consensus 157 ~mk~~~-~~g~I~~vsS 172 (331)
T KOG1210|consen 157 AMKKRE-HLGRIILVSS 172 (331)
T ss_pred Hhhccc-cCcEEEEehh
Confidence 777765 5556565553
No 492
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.87 E-value=0.34 Score=45.85 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-..++|+|+|.+..+|..++..|++.+. .+..++.. |.|+.+.++.|
T Consensus 157 l~Gk~vvViGrS~iVGkPla~lL~~~~a-------tVt~chs~--------------------------T~~l~~~~~~A 203 (284)
T PRK14177 157 VTGKNAVVVGRSPILGKPMAMLLTEMNA-------TVTLCHSK--------------------------TQNLPSIVRQA 203 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC-------EEEEeCCC--------------------------CCCHHHHHhhC
Confidence 3457999999999999999999987543 56666531 34666778999
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.+.|.|.
T Consensus 204 DIvIsAvGk~~ 214 (284)
T PRK14177 204 DIIVGAVGKPE 214 (284)
T ss_pred CEEEEeCCCcC
Confidence 99999988875
No 493
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.87 E-value=0.35 Score=45.68 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCC
Q 017740 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 37 ~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
-..++|+|+|.+..+|..++..|++.+. .+.+++.. |.++.+.++.|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~A-------tVt~chs~--------------------------T~~l~~~~~~A 202 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKPVAQLLLNENA-------TVTICHSK--------------------------TKNLKEVCKKA 202 (278)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC-------EEEEeCCC--------------------------CCCHHHHHhhC
Confidence 3457999999999999999999986543 56666531 34567778899
Q ss_pred cEEEEecCCCC
Q 017740 117 NIAVMVGGFPR 127 (366)
Q Consensus 117 DiVIi~aG~~~ 127 (366)
|+||.++|.|.
T Consensus 203 DIvIsAvGkp~ 213 (278)
T PRK14172 203 DILVVAIGRPK 213 (278)
T ss_pred CEEEEcCCCcC
Confidence 99999999876
No 494
>PRK06444 prephenate dehydrogenase; Provisional
Probab=92.84 E-value=0.21 Score=44.76 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhccc
Q 017740 40 CRVLVTGATGQIGYALVPMIARGIM 64 (366)
Q Consensus 40 ~KI~IiGA~G~vG~~la~~L~~~~~ 64 (366)
+||+|+||+|.+|+.++..+.+.++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~ 25 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL 25 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC
Confidence 4899999999999999999987554
No 495
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=92.82 E-value=0.48 Score=44.95 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCcE
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNI 118 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aDi 118 (366)
..+|..|| .|-+|++++.+|+..++ .++.||++. ++ ..++.+.-. +....+.|-.+++|+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-------kVtV~dr~~--~k----~~~f~~~Ga------~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-------KVTVYDRTK--DK----CKEFQEAGA------RVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-------EEEEEeCcH--HH----HHHHHHhch------hhhCCHHHHHhhcCE
Confidence 46999999 89999999999998776 899999863 22 234544321 234456788889999
Q ss_pred EEEecCCC
Q 017740 119 AVMVGGFP 126 (366)
Q Consensus 119 VIi~aG~~ 126 (366)
||..-+.|
T Consensus 95 vitmv~~~ 102 (327)
T KOG0409|consen 95 VITMVPNP 102 (327)
T ss_pred EEEEcCCh
Confidence 98876543
No 496
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.81 E-value=0.4 Score=43.14 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=44.9
Q ss_pred ccccCCCCCCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEE--eC
Q 017740 30 WSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVA--TT 107 (366)
Q Consensus 30 ~~~~~m~~~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~--t~ 107 (366)
|-|.++ +.+||+|+|| |.+|...+..|+..+. ++++++.+... .+ .++.+. ..+.. ..
T Consensus 3 Pl~l~l--~~k~vLVIGg-G~va~~ka~~Ll~~ga-------~V~VIs~~~~~-~l----~~l~~~-----~~i~~~~~~ 62 (202)
T PRK06718 3 PLMIDL--SNKRVVIVGG-GKVAGRRAITLLKYGA-------HIVVISPELTE-NL----VKLVEE-----GKIRWKQKE 62 (202)
T ss_pred ceEEEc--CCCEEEEECC-CHHHHHHHHHHHHCCC-------eEEEEcCCCCH-HH----HHHHhC-----CCEEEEecC
Confidence 444443 3579999995 9999999999987653 78888764321 11 122111 11111 11
Q ss_pred CHhhhhCCCcEEEEec
Q 017740 108 DVVEACKDVNIAVMVG 123 (366)
Q Consensus 108 ~l~~al~~aDiVIi~a 123 (366)
-..+.+.++|+||.+-
T Consensus 63 ~~~~~l~~adlViaaT 78 (202)
T PRK06718 63 FEPSDIVDAFLVIAAT 78 (202)
T ss_pred CChhhcCCceEEEEcC
Confidence 1245688999888763
No 497
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.79 E-value=0.69 Score=47.86 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
..++|.|+| .|.||+.++..|..-+. ++..||.....+ ...+. .+... ++.+.++.||
T Consensus 139 ~gktvgIiG-~G~IG~~vA~~l~~fG~-------~V~~~d~~~~~~----~~~~~---------g~~~~-~l~ell~~aD 196 (526)
T PRK13581 139 YGKTLGIIG-LGRIGSEVAKRAKAFGM-------KVIAYDPYISPE----RAAQL---------GVELV-SLDELLARAD 196 (526)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC-------EEEEECCCCChh----HHHhc---------CCEEE-cHHHHHhhCC
Confidence 357999999 79999999999986444 789999753211 11111 11222 6788999999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+++.
T Consensus 197 iV~l~l 202 (526)
T PRK13581 197 FITLHT 202 (526)
T ss_pred EEEEcc
Confidence 999984
No 498
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.77 E-value=0.4 Score=45.56 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhcCCccceEEeCCHhhhhCCCc
Q 017740 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 38 ~~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~~~~~~v~~t~~l~~al~~aD 117 (366)
...+|+|+| .|.+|..++..|...+. ++.++|++. +.+. . ..... ...+ ...++.+.++++|
T Consensus 150 ~gk~v~IiG-~G~iG~avA~~L~~~G~-------~V~v~~R~~--~~~~-~---~~~~g---~~~~-~~~~l~~~l~~aD 211 (287)
T TIGR02853 150 HGSNVMVLG-FGRTGMTIARTFSALGA-------RVFVGARSS--ADLA-R---ITEMG---LIPF-PLNKLEEKVAEID 211 (287)
T ss_pred CCCEEEEEc-ChHHHHHHHHHHHHCCC-------EEEEEeCCH--HHHH-H---HHHCC---Ceee-cHHHHHHHhccCC
Confidence 347999999 69999999999987554 789999864 2211 1 11110 0111 1235667889999
Q ss_pred EEEEec
Q 017740 118 IAVMVG 123 (366)
Q Consensus 118 iVIi~a 123 (366)
+|+.+.
T Consensus 212 iVint~ 217 (287)
T TIGR02853 212 IVINTI 217 (287)
T ss_pred EEEECC
Confidence 999984
No 499
>PLN02928 oxidoreductase family protein
Probab=92.68 E-value=0.39 Score=46.97 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=59.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHHhhhhc-CCccceEEeCCHhhhhCCCc
Q 017740 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF-PLLKGVVATTDVVEACKDVN 117 (366)
Q Consensus 39 ~~KI~IiGA~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl~~~~~-~~~~~v~~t~~l~~al~~aD 117 (366)
.++|.|+| .|.||+.++..|..-+. +|..+|+....+ ......++.... ..........++.+.++.||
T Consensus 159 gktvGIiG-~G~IG~~vA~~l~afG~-------~V~~~dr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aD 228 (347)
T PLN02928 159 GKTVFILG-YGAIGIELAKRLRPFGV-------KLLATRRSWTSE--PEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD 228 (347)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhCCC-------EEEEECCCCChh--hhhhhccccccccccccccCcccCHHHHHhhCC
Confidence 47999999 79999999999976443 788898753111 100000110000 00000012347889999999
Q ss_pred EEEEecCCCCCCCCChhHHHhhhHHHHHHHHHHHHhhcCCCcEEEEEcCC
Q 017740 118 IAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANP 167 (366)
Q Consensus 118 iVIi~aG~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~~~~~~viv~tNP 167 (366)
+|+++. |..+ .+ ..+ +. .+.+++. ++++.+|++++-
T Consensus 229 iVvl~l--Plt~-~T-~~l-------i~--~~~l~~M-k~ga~lINvaRG 264 (347)
T PLN02928 229 IVVLCC--TLTK-ET-AGI-------VN--DEFLSSM-KKGALLVNIARG 264 (347)
T ss_pred EEEECC--CCCh-Hh-hcc-------cC--HHHHhcC-CCCeEEEECCCc
Confidence 999984 2211 11 111 11 2344444 478888998874
No 500
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=92.63 E-value=1.2 Score=38.42 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=46.1
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHhcccCCCCCCeEEEEEeCccchHhhhhHHHHH-hhhhcCCccceEEeCCHhhhhCCC
Q 017740 39 PCRVLVTGA-TGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL-IDAAFPLLKGVVATTDVVEACKDV 116 (366)
Q Consensus 39 ~~KI~IiGA-~G~vG~~la~~L~~~~~~~~~~~~ei~L~D~~~~~~~l~~~~~dl-~~~~~~~~~~v~~t~~l~~al~~a 116 (366)
..||+++|= -+.+..+++..+..-+. +++++-.....-.......+. .........++..+.+..+++++|
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-------~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~a 74 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-------EVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGA 74 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-------EEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-------EEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCC
Confidence 468999993 36777777776665433 688887653110011112221 111111235688889999999999
Q ss_pred cEEEEe
Q 017740 117 NIAVMV 122 (366)
Q Consensus 117 DiVIi~ 122 (366)
|+|+..
T Consensus 75 Dvvy~~ 80 (158)
T PF00185_consen 75 DVVYTD 80 (158)
T ss_dssp SEEEEE
T ss_pred CEEEEc
Confidence 998876
Done!