RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017740
(366 letters)
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 494 bits (1275), Expect = e-177
Identities = 173/322 (53%), Positives = 222/322 (68%), Gaps = 5/322 (1%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 96
K P RV VTGA GQIGY+L+ IA G MLG DQPVIL +L+I A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
FPLL G+ AT D A KD + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 276
+WGNHSST +PD+ HA V +P E V D W FI TV QRGAAII+AR S
Sbjct: 182 TVWGNHSSTMFPDLFHAEV----DGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKG 336
SA SAA++A +HIRDW LGTP+G WVSM V S G YGIPEG++YSFPVT + G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 337 LKVDEFSRAKMDATAEELAEEK 358
L+++EF+R +M+ TA+EL +E
Sbjct: 297 LEINEFARKRMEITAQELLDEM 318
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 491 bits (1266), Expect = e-176
Identities = 171/331 (51%), Positives = 221/331 (66%), Gaps = 7/331 (2%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI--EPAAEALNGVKMELID 94
K P RV VTGA GQI Y+L+ IA G MLG DQPVIL +L+I E A +AL GV ME+ D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 95 AAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKH 154
AFPLL G+ A D + A KD ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 155 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVK 214
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRA+ QI+ + VS ++
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 215 NVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK 274
+ +WGNHS T Y D +A + V++ + DD W F+ TV +RGAAII AR
Sbjct: 183 KLFVWGNHSPTMYADYRYAQI----DGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARG 238
Query: 275 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 334
+SSA SAA++A DHI DWVLGT G W +MG+ SDGSYGIPEG+I+ FPVT E GE+ IV
Sbjct: 239 VSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIV 297
Query: 335 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 365
+GL +D FS+ +++ T EL EE+ L
Sbjct: 298 QGLSIDAFSQERINVTLNELLEEQNGVQHLL 328
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 488 bits (1259), Expect = e-175
Identities = 199/330 (60%), Positives = 245/330 (74%), Gaps = 1/330 (0%)
Query: 38 EPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAF 97
EP RVLVTGA GQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 98 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 157
PLLK V+AT A KD+++A++VG PR++GMERKD++ NV I+K Q +AL+K+A
Sbjct: 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 158 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVI 217
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +L V DVKNVI
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181
Query: 218 IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSS 277
IWGNHSSTQYPDVNHA V E V EAV DD+WL EFITTVQQRGAA+IKARKLSS
Sbjct: 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
Query: 278 ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDG-SYGIPEGLIYSFPVTCEKGEWSIVKG 336
A+SAA + CDH+RD GTP+G +VSMG+ SDG SYG+P+ L+YSFPVT + W IV+G
Sbjct: 242 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 301
Query: 337 LKVDEFSRAKMDATAEELAEEKTLAYSCLN 366
L +++FSR KMD TA+ELAEEK A+ L+
Sbjct: 302 LPINDFSREKMDLTAKELAEEKETAFEFLS 331
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 478 bits (1232), Expect = e-170
Identities = 136/331 (41%), Positives = 187/331 (56%), Gaps = 6/331 (1%)
Query: 37 KEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA 96
K+ + V+GA G I L+ +A G + G DQP+ L +L E + +AL GV MEL D+
Sbjct: 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL 89
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
+PLL+ V D E +DV+ A+++G PR GMER ++ N I+ Q AL A+
Sbjct: 90 YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ + V V NV
Sbjct: 150 KNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 209
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLS 276
IWGNHS+TQ PD +A + +PV+E + WL EF TVQ+RG A+I+ S
Sbjct: 210 TIWGNHSTTQVPDFLNAKI----DGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRS 265
Query: 277 SALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGS-YGIPEGLIYSFPVTCEK-GEWSIV 334
SA S A S D I+ V TP+G W S GVY+ G+ YGI E +++S P + G++ +
Sbjct: 266 SAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELA 325
Query: 335 KGLKVDEFSRAKMDATAEELAEEKTLAYSCL 365
+ D+F ++ + EL EK
Sbjct: 326 TDVSNDDFLWERIKKSEAELLAEKKCVAHLT 356
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 319 bits (820), Expect = e-108
Identities = 78/323 (24%), Positives = 129/323 (39%), Gaps = 19/323 (5%)
Query: 39 PCRVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFP 98
++ + GA G IG + A L P+ + L +P A L GV E+ F
Sbjct: 8 EEKLTIVGAAGMIGSNMAQTAAMM-RLTPN--LCL----YDPFAVGLEGVAEEIRHCGFE 60
Query: 99 LLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPN 158
L + T+D+ EA D V GG PRKEGM R+D++ N I ++ +
Sbjct: 61 GL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDC 119
Query: 159 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVII 218
V+++ NPA+ L+ ++ + +T L LD R ++++ + S V N
Sbjct: 120 KHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRT 178
Query: 219 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT---EFITTVQQRGAAIIKARKL 275
+G H + A V P+ + + D N E V + GA IIK R
Sbjct: 179 YGGHGEQMAVFASTAKV----NGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGR 234
Query: 276 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVK 335
SS S + + + IR + G W + Y + G ++ + G
Sbjct: 235 SSFQSPSYVSIEMIRAAMGGE-AFRWPAG-CYVNV-PGFEHIMMAMETTITKDGVKHSDI 291
Query: 336 GLKVDEFSRAKMDATAEELAEEK 358
+E RA + + LA+ +
Sbjct: 292 NQLGNEAERAALKESYSHLAKLR 314
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 89.5 bits (223), Expect = 2e-20
Identities = 64/331 (19%), Positives = 116/331 (35%), Gaps = 50/331 (15%)
Query: 41 RVLVTGATGQIGYALVPMIA-RGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 99
+V V GA G +G A IA R I D+ V +DI + G +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIA---DEVV---FVDIPDKEDDTVGQAADTNHGI-AY 54
Query: 100 LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNC 159
E ++ V+ G PR+ G R D+ N I + S+L++H +
Sbjct: 55 DSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDY 113
Query: 160 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLK 207
L +NP + L E + +G +SE
Sbjct: 114 ISLTTSNPVDLLNRHLYEA------------GDRSREQVIGFGGRLDSARFRYVLSEEFD 161
Query: 208 VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGA 267
V +V+ I+ G H Q P + +V + + + + +Q+
Sbjct: 162 APVQNVEGTIL-GEHGDAQVPVFSKVSV----DGTDPEFSGDEKE----QLLGDLQESAM 212
Query: 268 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPVT- 325
+I+ + + + H+ + +L S V +G +G E + PV+
Sbjct: 213 DVIE--RKGATEWGPARGVAHMVEAILHDTGEVLPAS--VKLEGEFGH-EDTAFGVPVSL 267
Query: 326 CEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
G IV+ +D++ + M AE+L++
Sbjct: 268 GSNGVEEIVE-WDLDDYEQDLMADAAEKLSD 297
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 86.8 bits (216), Expect = 2e-19
Identities = 49/270 (18%), Positives = 104/270 (38%), Gaps = 37/270 (13%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
V T D + ++ ++ ++ G PRK GM R D++ N+ + + ++ + PN V+
Sbjct: 62 VRGTNDY-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN-CPNAFVI 119
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
+ NP + +L++F + + N+ +G +++ L V V
Sbjct: 120 CITNPLDIMVNMLQKF------------SGVPDNKIVGMAGVLDSARFRTFLADELNVSV 167
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----G 266
V+ ++ G H T P + V + + + + L E + + R G
Sbjct: 168 QQVQAYVM-GGHGDTMVPLTKMSNV----AGVSLEQ-LVKEGKLKQERLDAIVSRTRSGG 221
Query: 267 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 326
I+ K SA A ++A + + L K G YG+ E L P
Sbjct: 222 GEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEI 281
Query: 327 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
++ +++ + R ++ + + +
Sbjct: 282 SANGVRPIE-VEISDKEREQLQVSINAIKD 310
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 85.6 bits (213), Expect = 5e-19
Identities = 55/266 (20%), Positives = 105/266 (39%), Gaps = 35/266 (13%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
V + D + +I ++ G PRK GM R+D++ KN I K + KH + N ++
Sbjct: 58 VTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIII 115
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
VV+NP + + + L R +G I+ L V +
Sbjct: 116 VVSNPLDIMTHVAWVR------------SGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 270
D+ ++ G H P V + TV P+ + + + + + + GA I+
Sbjct: 164 QDINACVL-GGHGDAMVPVVKYTTV----AGIPISDLLPAETI--DKLVERTRNGGAEIV 216
Query: 271 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 330
+ K SA A +S+ + + ++ K + V +G YGI + PV +
Sbjct: 217 EHLKQGSAFYAPASSVVEMVESIVLDRKRV-LPCAVGLEGQYGI-DKTFVGVPVKLGRNG 274
Query: 331 WSIVKGLKVDEFSRAKMDATAEELAE 356
+ + +D+ + +A+ + E
Sbjct: 275 VEQIYEINLDQADLDLLQKSAKIVDE 300
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 85.6 bits (213), Expect = 6e-19
Identities = 50/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
+ + E ++ ++ ++ G PRK M R D+++ N I + A + K+ PN V+
Sbjct: 71 IFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
+ NP + KE + + N+ G +S L V
Sbjct: 129 CITNPLDAMVYYFKEK------------SGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----G 266
SDV +++ G H P + T+ G + + + + I + ++ G
Sbjct: 177 SDVSAIVV-GGHGDEMIPLTSSVTI----GGILLSD-FVEQGKITHSQINEIIKKTAFGG 230
Query: 267 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 326
I++ K SA A +++ + L K + Y G Y + L PV
Sbjct: 231 GEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSV-LVCSTYLTGQYNV-NNLFVGVPVVI 288
Query: 327 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
K V + + + ++ + E +
Sbjct: 289 GKNGIEDVVIVNLSDDEKSLFSKSVESIQN 318
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 85.0 bits (211), Expect = 7e-19
Identities = 74/336 (22%), Positives = 125/336 (37%), Gaps = 56/336 (16%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMELIDAAFP 98
+V V GA+G IG L ++ P++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKN-------SPLVSRLTLYDIAHT----PGVAADLSHIETR 50
Query: 99 L-LKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAP 157
+KG + + + K ++ V+ G PRK GM R D+ + N +I +A +H P
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CP 109
Query: 158 NCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDV 213
+ + +++NP N+ A + K+ I +T LD RA ++E + + V
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHG-VYNPNKIFGVTTLDIVRANAFVAELKGLDPARV 168
Query: 214 KNVIIWGNHSS-TQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKA 272
+V + G H+ T P ++ T K + P + +Q+ G ++KA
Sbjct: 169 -SVPVIGGHAGKTIIPLISQCTP---KVDFPQDQLST--------LTGRIQEAGTEVVKA 216
Query: 273 RK------LSSALSAASSA---CDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFP 323
+ LS A + A D + K V P Y F
Sbjct: 217 KAGAGSATLSMAYAGARFVFSLVDAMNG------KEGVVECSFVKSQETDCP----Y-FS 265
Query: 324 VTCEKGEWSIVKGLKVDEFS---RAKMDATAEELAE 356
G+ I K L + + S + EL
Sbjct: 266 TPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 84.9 bits (211), Expect = 8e-19
Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 44/270 (16%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
V T D +D ++ ++ G PR GM R D+++KN I + +P+ ++
Sbjct: 58 VTGTNDY-GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTII 115
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
VVANP + + E + NR MG I+E L V V
Sbjct: 116 VVANPLDVMTYVAYEA------------SGFPTNRVMGMAGVLDTGRFRSFIAEELDVSV 163
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 270
DV+ +++ G H T P + TV G PV + + D E + + G I+
Sbjct: 164 RDVQALLM-GGHGDTMVPLPRYTTV----GGIPVPQLIDDARI--EEIVERTKGAGGEIV 216
Query: 271 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 326
S+ +AA ++D + Y DG YG+ + L PV
Sbjct: 217 DLMGTSAWYAPGAAAAEMTEAILKD------NKRILPCAAYCDGEYGL-DDLFIGVPVKL 269
Query: 327 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
G V + +D +A++ +A +
Sbjct: 270 GAGGVEEVIEVDLDADEKAQLKTSAGHVHS 299
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 84.5 bits (210), Expect = 1e-18
Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 44/270 (16%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
+ + E + +I ++ G RK GM R+ ++ N + A ++ + A + V+
Sbjct: 56 ISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVV 113
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
+ NP + ++ + T R +G IS++L V
Sbjct: 114 ITTNPVDAMTYVMYKK------------TGFPRERVIGFSGILDSARMAYYISQKLGVSF 161
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 270
V +++ G H +P ++V G P+ ++ + E ++ GA I
Sbjct: 162 KSVNAIVL-GMHGQKMFPVPRLSSV----GGVPLEHLMSKEEI--EEVVSETVNAGAKIT 214
Query: 271 KARKLSS----ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTC 326
+ R SS A + RD +Y G YG ++ P
Sbjct: 215 ELRGYSSNYGPAAGLVLTVEAIKRD------SKRIYPYSLYLQGEYGY-NDIVAEVPAVI 267
Query: 327 EKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
K + L + E + K D + + +
Sbjct: 268 GKSGIERIIELPLTEDEKRKFDEAVQAVKK 297
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 84.1 bits (209), Expect = 1e-18
Identities = 53/295 (17%), Positives = 109/295 (36%), Gaps = 35/295 (11%)
Query: 75 MLDIEPAAEALNGVKMELIDAA-FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMER 133
++DI G +++++A+ + T D ++ V+ G RK GM R
Sbjct: 37 LVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSR 96
Query: 134 KDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRL 193
D+++ N I K+ + KH +PN ++V+ NP + + +
Sbjct: 97 DDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPVDAMTYSVFKE------------AGF 143
Query: 194 DHNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGE 241
R +GQ I++ L + V D+ ++ G H P V ++ G
Sbjct: 144 PKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYA----GG 198
Query: 242 KPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW 301
P+ + + + ++ G I+ SA A +++ + + +L +
Sbjct: 199 IPLETLIPKERL--EAIVERTRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRV- 255
Query: 302 VSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
+ Y +G YG L PV + L++ + +D + E +
Sbjct: 256 LPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVRN 309
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 84.1 bits (209), Expect = 2e-18
Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 42/275 (15%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEKHAAP 157
V A A + ++ G + G R D++ N I + ++K+ P
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CP 124
Query: 158 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISER 205
++VV NP + ++ E + + N G +++
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA------------SGVPTNMICGMACMLDSGRFRRYVADA 172
Query: 206 LKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR 265
L V DV+ +I G H P V + TV P+++ D + + + + +
Sbjct: 173 LSVSPRDVQATVI-GTHGDCMVPLVRYITV----NGYPIQK-FIKDGVVTEKQLEEIAEH 226
Query: 266 ----GAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 321
G I++ SA A +++ + L K + VY +G YG+ + +
Sbjct: 227 TKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRV-IPCSVYCNGEYGL-KDMFIG 284
Query: 322 FPVTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
P V L+++E + + + +++
Sbjct: 285 LPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMA 319
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 83.3 bits (207), Expect = 3e-18
Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 35/266 (13%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
V T + + ++ V+ G PRK GM R+D++ N I +A S +PN ++
Sbjct: 59 VTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVII 116
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
+V NP + + E + R +GQ I+ V V
Sbjct: 117 MVNNPLDAMTYLAAEV------------SGFPKERVIGQAGVLDAARYRTFIAMEAGVSV 164
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 270
DV+ +++ G H P + + PV E +A D + + ++ G I+
Sbjct: 165 EDVQAMLM-GGHGDEMVPLPRFSCI----SGIPVSEFIAPDRL--AQIVERTRKGGGEIV 217
Query: 271 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 330
K SA A ++A + + VL K + + Y G YG+ + + PV G
Sbjct: 218 NLLKTGSAYYAPAAATAQMVEAVLKDKKRV-MPVAAYLTGQYGL-NDIYFGVPVILGAGG 275
Query: 331 WSIVKGLKVDEFSRAKMDATAEELAE 356
+ L ++E A ++A+A+ +
Sbjct: 276 VEKILELPLNEEEMALLNASAKAVRA 301
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 83.3 bits (207), Expect = 3e-18
Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 37/262 (14%)
Query: 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170
++ ++ P + +R +++ N I + A ++K+ PN V+ + NP +
Sbjct: 68 ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICITNPLDV 126
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 218
++ + L HN+ G I++ V+ SDV +I
Sbjct: 127 MVSHFQKV------------SGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174
Query: 219 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 274
G H P + +V G P+ + + E I + + K
Sbjct: 175 -GGHGDGMVPATSSVSV----GGVPLSSFI-KQGLITQEQIDEIVCHTRIAWKEVADNLK 228
Query: 275 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 334
+A A ++A + + L K V + YG+ +G+ P K +
Sbjct: 229 TGTAYFAPAAAAVKMAEAYLKDKKAV-VPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDI 286
Query: 335 KGLKVDEFSRAKMDATAEELAE 356
L + + + + E+
Sbjct: 287 LELDLTPLEQKLLGESINEVNT 308
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 83.3 bits (207), Expect = 3e-18
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 37/262 (14%)
Query: 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170
A + ++ ++ G PRK GM R D++ N+ + + + ++K+ AP V+ + NP +
Sbjct: 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLDA 129
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 218
L++F + L ++ +G +SE V V DV ++
Sbjct: 130 MVWALQKF------------SGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 219 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 274
G H + P ++TV P+ + V W + + + + QR GA I+ K
Sbjct: 178 -GGHGDSMVPLARYSTV----AGIPLPDLV-KMGWTSQDKLDKIIQRTRDGGAEIVGLLK 231
Query: 275 LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIV 334
SA A +++ + + L K + + G YG+ + + P +
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKKRV-LPVAAQLSGQYGV-KDMYVGVPTVIGANGVERI 289
Query: 335 KGLKVDEFSRAKMDATAEELAE 356
+ +D+ +A+ D + +A
Sbjct: 290 IEIDLDKDEKAQFDKSVASVAG 311
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 83.0 bits (206), Expect = 4e-18
Identities = 69/327 (21%), Positives = 122/327 (37%), Gaps = 38/327 (11%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+V V GA G IG AL ++ + G + L + DI P GV ++L +
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAVK 54
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCK 160
+ D A + ++ ++ G RK GM+R D+ + N I K + K P
Sbjct: 55 IKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKAC 113
Query: 161 VLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNV 216
+ ++ NP NT A +LK+ A + +T LD R+ ++E +V+
Sbjct: 114 IGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVP 172
Query: 217 IIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKARK-- 274
+I G+ T P + + E + +Q G +++A+
Sbjct: 173 VIGGHSGVTILP------LLSQVPGVSFTEQEVA------DLTKRIQNAGTEVVEAKAGG 220
Query: 275 ----LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 330
LS +AA +R L +G V DG +S P+ K
Sbjct: 221 GSATLSMGQAAARFGLSLVRA--LQGEQGVVECAYVEGDG----QYARFFSQPLLLGKNG 274
Query: 331 WSIVKGL-KVDEFSRAKMDATAEELAE 356
K + + F + ++ + L +
Sbjct: 275 VEERKSIGTLSAFEQNALEGMLDTLKK 301
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 82.6 bits (205), Expect = 6e-18
Identities = 61/333 (18%), Positives = 129/333 (38%), Gaps = 46/333 (13%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAA---- 96
+V + GA+G++G A ++A + ++L + E + L G++ ++ DA
Sbjct: 2 KVTIIGASGRVGSATALLLA---KEPFMKDLVL--IGREHSINKLEGLREDIYDALAGTR 56
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
V + + + + ++ ++ G PRKEGM R D+ N I A + +
Sbjct: 57 SDA-NIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C 114
Query: 157 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISE 204
K+ V+ NP + ++ + N+ G I++
Sbjct: 115 DT-KIFVITNPVDVMTYKALVD------------SKFERNQVFGLGTHLDSLRFKVAIAK 161
Query: 205 RLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQ 264
VH+ +V+ II G H + P ++ ++ G P+++ E I V+
Sbjct: 162 FFGVHIDEVRTRII-GEHGDSMVPLLSATSI----GGIPIQKFERFKELPIDEIIEDVKT 216
Query: 265 RGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP 323
+G II+ + ++A ++ ++ K +S Y DG + + P
Sbjct: 217 KGEQIIR--LKGGSEFGPAAAILNVVRCIVNNEKRLLTLS--AYVDGEFDGIRDVCIGVP 272
Query: 324 VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
V + V +++D+ +AE + +
Sbjct: 273 VKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKK 305
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 80.8 bits (200), Expect = 3e-17
Identities = 71/332 (21%), Positives = 127/332 (38%), Gaps = 48/332 (14%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVI--LHMLDIEPAAEALNGVKMEL--IDAA 96
+V + GA G IG L ++ P++ LH+ D+ A GV ++ +D
Sbjct: 10 KVAILGAAGGIGQPLAMLMKM-------NPLVSVLHLYDVVNA----PGVTADISHMDTG 58
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAA 156
+ +G + + A +++ ++ G PRK GM R D+ N I K + K
Sbjct: 59 AVV-RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-C 116
Query: 157 PNCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRAMGQISERLKVHVSDV 213
P V +++NP N+ I E A + K + +T LD RA ++E L + DV
Sbjct: 117 PRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDV 176
Query: 214 KNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIKAR 273
++ G+ T P ++ +S ++ + +Q G +++A+
Sbjct: 177 DVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDR-----------IQNGGTEVVEAK 225
Query: 274 K------LSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCE 327
LS A +A A +R L G V + L + F
Sbjct: 226 AGAGSATLSMAYAAVKFADACLRG--LRGDAG--VIECAFVSSQVT---ELPF-FASKVR 277
Query: 328 KGEWSIVKGLKVDEFS---RAKMDATAEELAE 356
G I + + + R ++ +ELA
Sbjct: 278 LGRNGIEEVYSLGPLNEYERIGLEKAKKELAG 309
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 77.9 bits (193), Expect = 3e-16
Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 49/276 (17%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
+V++ D + + ++ G ++EG R +++ +NV+I+K + K+ +P CK+L
Sbjct: 76 IVSSKDY-SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLL 133
Query: 163 VVANPANTNA-LILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVH 209
+V+NP + + K ++ NR +G + ERL VH
Sbjct: 134 IVSNPVDILTYVAWK-------------ISGFPKNRVIGSGCNLDSARFRYLMGERLGVH 180
Query: 210 VSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT-----EFITTVQQ 264
++ G H + P + V ++ + V
Sbjct: 181 PLSCHGWVL-GEHGDSSVPVWSGVNV----AGVSLKSLNPQLGTDADKEQWKDVHKQVVD 235
Query: 265 RGAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 321
+IK + +S LS A A +++ + G YGI E + S
Sbjct: 236 SAYEVIKLKGYTSWAIGLSVADLAESIMKN------LRRVHPISTMIKGLYGIKEDVFLS 289
Query: 322 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
P + + G +VK + + A++ +A+ L
Sbjct: 290 VPCILGQNGISDVVK-VTLTPDEEARLKKSADTLWG 324
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 77.6 bits (192), Expect = 3e-16
Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 45/300 (15%)
Query: 75 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 134
++DI + G ++L +A P + KD ++ V+ G P+K G R
Sbjct: 39 IVDI--FKDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRL 95
Query: 135 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 194
D+++KN+ I K+ + N LV ANP + + L+
Sbjct: 96 DLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWK------------LSGFP 142
Query: 195 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 242
NR +G I+E + V V I+ G H T++P +HA + G
Sbjct: 143 KNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANI----GGV 197
Query: 243 PVREAVADDNWLNTEFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPK 298
+ E V + + + + + IIK + + ++A I +L
Sbjct: 198 TIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKG--ATFYGIATALARISKAILNDEN 255
Query: 299 GTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
+S VY DG YG+ + P V G +I++ + + + M +A +L +
Sbjct: 256 AVLPLS--VYMDGQYGL-NDIYIGTPAVINRNGIQNILE-IPLTDHEEESMQKSASQLKK 311
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 77.2 bits (191), Expect = 4e-16
Identities = 53/276 (19%), Positives = 100/276 (36%), Gaps = 42/276 (15%)
Query: 111 EACKDVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVA 165
+ ++ ++ GF + G R D++ N I ++K+ PN ++VV
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 126
Query: 166 NPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDV 213
NP + +L + + + N+ +G IS++L V DV
Sbjct: 127 NPVDVMVQLLHQH------------SGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 214 KNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR---GAAII 270
I+ G H + + TV G P++E ++ ++ + + R A I
Sbjct: 175 NAHIV-GAHGNKMVLLKRYITV----GGIPLQE-FINNKLISDAELEAIFDRTVNTALEI 228
Query: 271 KARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGE 330
+S A ++A + + L K + +G YG + PV
Sbjct: 229 VNLH-ASPYVAPAAAIIEMAESYLKDLKKV-LICSTLLEGQYGH-SDIFGGTPVVLGANG 285
Query: 331 WSIVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 366
V L+++ +AK D E K LA+ +
Sbjct: 286 VEQVIELQLNSEEKAKFDEAIAETKRMKALAHHHHH 321
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 76.9 bits (190), Expect = 5e-16
Identities = 51/302 (16%), Positives = 104/302 (34%), Gaps = 61/302 (20%)
Query: 75 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 134
M+D+E + L+ K +V+ D + V+ G ++EG R
Sbjct: 63 MMDLEHGSLFLHTAK-------------IVSGKDY-SVSAGSKLVVITAGARQQEGESRL 108
Query: 135 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 194
+++ +NV+I+K + KH +P+C + + L+ L
Sbjct: 109 NLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWK------------LSGLP 155
Query: 195 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 242
+R +G + ERL VH V +I G H + + +K K
Sbjct: 156 MHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI-GQHGDSVPSVWSGMWD--AKLHK 212
Query: 243 PVREAVADDNWLNTEFITTVQQR-----GAAIIKARKLSSALSAASSACDHIRDWVLGTP 297
V ++ + + ++ G + + + ++ + + ++
Sbjct: 213 DVVDSAYE--------VIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDL 264
Query: 298 KGTW-VSMGVYSDGSYGIPEGLIYSFPVTCEKG--EWSIVKGLKVDEFSRAKMDATAEEL 354
VS YGI + + S P G +IVK +K+ ++ +A L
Sbjct: 265 CRVHPVS--TMVKDFYGIKDNVFLSLPCVLNNGISHCNIVK-MKLKPDEEQQLQKSATTL 321
Query: 355 AE 356
+
Sbjct: 322 WD 323
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 75.6 bits (187), Expect = 1e-15
Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 45/300 (15%)
Query: 75 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 134
++D+ + G ++LI P + K ++ ++ G P+K G R
Sbjct: 30 LIDV--DKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRL 86
Query: 135 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 194
++ +N + K A + K+ AP+ V+VV NP + + + +D
Sbjct: 87 QLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKE------------SGMD 133
Query: 195 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 242
+ G I++ V +I G H ++ P + A + G
Sbjct: 134 PRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMI----GGI 188
Query: 243 PVREAVADDNWLNTEFITTVQQR----GAAIIKARKLSSALSAASSACDHIRDWVLGTPK 298
P++ +++ + ++ II+ + + A + A I + + K
Sbjct: 189 PLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE--RKGATHYAIALAVADIVESIFFDEK 246
Query: 299 GTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
+S VY + G+ + L S P + G I++ L ++E +A L
Sbjct: 247 RVLTLS--VYLEDYLGV-KDLCISVPVTLGKHGVERILE-LNLNEEELEAFRKSASILKN 302
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 74.8 bits (185), Expect = 2e-15
Identities = 55/267 (20%), Positives = 92/267 (34%), Gaps = 50/267 (18%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
+V D K I V+ G RK GM R D+ KN I K A + ++ AP K+L
Sbjct: 58 IVGGADY-SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKIL 115
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
VV NP + I+ + + N G +
Sbjct: 116 VVTNPMDVMTYIMWKE------------SGKPRNEVFGMGNQLDSQRLKERLYNAGAR-- 161
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGAAII 270
+++ I G H + + + A + EAV +D V+ A +I
Sbjct: 162 -NIRRAWIIGEHGDSMFVAKSLADF----DGEVDWEAVEND----------VRFVAAEVI 206
Query: 271 KARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFPVTCEKG 329
K + + + + A + V+ S + G YGI E + P K
Sbjct: 207 K--RKGATIFGPAVAIYRMVKAVVEDTGEIIPTS--MILQGEYGI-ENVAVGVPAKLGKN 261
Query: 330 EWSIVKGLKVDEFSRAKMDATAEELAE 356
+ +K+ + K+ +A+ L E
Sbjct: 262 GAEVAD-IKLSDEEIEKLRNSAKILRE 287
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 74.1 bits (183), Expect = 5e-15
Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 49/276 (17%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
+ + D E C+D ++ V+ G +K G R +++ V+I KA L K APN +
Sbjct: 64 IDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
++ NP + + ++ LT L N+ G I+++ V+V
Sbjct: 122 LITNPVDIATHVAQK------------LTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDN--WLNTEFITTVQQR--- 265
+V I G H ++ P AT+ G P+ + L+ + + Q
Sbjct: 170 KNVHAYIA-GEHGDSEVPLWESATI----GGVPMSDWTPLPGHDPLDADKREEIHQEVKN 224
Query: 266 -GAAIIKARKLSS---ALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYS 321
II + ++ +S + D + + +GI + S
Sbjct: 225 AAYKIINGKGATNYAIGMSGVDIIEAVLHD------TNRILPVSSMLKDFHGI-SDICMS 277
Query: 322 FP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
P + +G + + V + A + +AE L E
Sbjct: 278 VPTLLNRQGVNNTIN-TPVSDKELAALKRSAETLKE 312
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 74.1 bits (183), Expect = 5e-15
Identities = 58/272 (21%), Positives = 95/272 (34%), Gaps = 43/272 (15%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
+ E CKD +I + G +K G R +++ KN+ I+K S + + L
Sbjct: 62 KTSYGTY-EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFL 119
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
V NP + + + L R +G +SE
Sbjct: 120 VATNPVDILTYATWK------------FSGLPKERVIGSGTTLDSARFRFMLSEYFGAAP 167
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----G 266
+V II G H T+ P +HA V G PV E V ++ E + +
Sbjct: 168 QNVCAHII-GEHGDTELPVWSHANV----GGVPVSELVEKNDAYKQEELDQIVDDVKNAA 222
Query: 267 AAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-V 324
II+ + + + + I +L VS Y DG YG + + P V
Sbjct: 223 YHIIEKKG--ATYYGVAMSLARITKAILHNENSILTVS--TYLDGQYGA-DDVYIGVPAV 277
Query: 325 TCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
G I + L ++E + + +A L
Sbjct: 278 VNRGGIAGITE-LNLNEKEKEQFLHSAGVLKN 308
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 73.0 bits (180), Expect = 1e-14
Identities = 48/301 (15%), Positives = 90/301 (29%), Gaps = 67/301 (22%)
Query: 75 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 134
+LD+ + +D L V + D+ A + +
Sbjct: 44 LLDLSEGTKG------ATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVN-SLGSSQSYL 95
Query: 135 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 194
DV+ NV +++A AL + + + +LV + P + + L+
Sbjct: 96 DVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWK------------LSTFP 142
Query: 195 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 242
NR +G I+ LK S + +I G + + S
Sbjct: 143 ANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVI-GEQGEDKVLTWSGQEEVVSH--- 198
Query: 243 PVREAVADDNWLNTEFITTVQQRGAAIIKARKLSS---ALSAASSACDHIRDW--VLGTP 297
+ R +++ + S LS A + + V
Sbjct: 199 --------------TSQVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVH--S 242
Query: 298 KGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVK-GLKVDEFSRAKMDATAEELA 355
VS + G Y I + S P + G ++K LK D K+ ++A +
Sbjct: 243 ----VS--ALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDT-VTEKLQSSASSIH 295
Query: 356 E 356
Sbjct: 296 S 296
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 72.9 bits (180), Expect = 1e-14
Identities = 50/271 (18%), Positives = 97/271 (35%), Gaps = 41/271 (15%)
Query: 103 VVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVL 162
+ D + C+D ++ V+ G +K G R D++ KN++I+++ ++ L
Sbjct: 63 DIWHGDY-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFL 120
Query: 163 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHV 210
V NP + + + L H R +G + E V
Sbjct: 121 VATNPVDILTYATWK------------FSGLPHERVIGSGTILDTARFRFLLGEYFSVAP 168
Query: 211 SDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR---GA 267
+V II G H T+ P + A + G P+R+ V + + + A
Sbjct: 169 QNVHAYII-GEHGDTELPVWSQAYI----GVMPIRKLVESKGEEAQKDLERIFVNVRDAA 223
Query: 268 AIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-VT 325
I +K + + + +L VS Y DG YG + P V
Sbjct: 224 YQIIEKK-GATYYGIAMGLARVTRAILHNENAILTVS--AYLDGLYGE-RDVYIGVPAVI 279
Query: 326 CEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
G +++ +++++ + + +A L
Sbjct: 280 NRNGIREVIE-IELNDDEKNRFHHSAATLKS 309
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 71.8 bits (177), Expect = 2e-14
Identities = 56/302 (18%), Positives = 113/302 (37%), Gaps = 50/302 (16%)
Query: 75 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 134
++D+ + G ++L DA + CKD ++ V+ G P+K G R
Sbjct: 35 IVDV--VKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRL 91
Query: 135 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 194
D+++KN++I + + + LV ANP + + +
Sbjct: 92 DLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWK------------FSGFP 138
Query: 195 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 242
R +G + ++ V V I+ G H +++ + AT+ G +
Sbjct: 139 KERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATI----GTR 193
Query: 243 PVREAVADDNWLNTEFITTVQQR---GAAIIKARKLSS----ALSAASSACDHIRDWVLG 295
PVR+ VA + ++ + + ++ A I K ++ + + +RD
Sbjct: 194 PVRD-VAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRD---- 248
Query: 296 TPKGTWVSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEEL 354
+ + +G Y DG YG+ + P + G I++ + KM +A L
Sbjct: 249 --ENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQIIE-SPLSADELKKMQDSAATL 304
Query: 355 AE 356
+
Sbjct: 305 KK 306
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 71.8 bits (177), Expect = 3e-14
Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 43/264 (16%)
Query: 111 EACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANT 170
C D ++ V+ G +K G R D++SKN+ I+K+ + + LV NP +
Sbjct: 70 SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDI 128
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVII 218
A + + L R +G +SE V V II
Sbjct: 129 LAYATWK------------FSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176
Query: 219 WGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQR----GAAIIKARK 274
G H T+ P +HA + +P++ + + I + + II+A+
Sbjct: 177 -GEHGDTELPVWSHANI----AGQPLKT-LLEQRPEGKAQIEQIFVQTRDAAYDIIQAKG 230
Query: 275 LSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWS 332
+ + I + + VS +G Y E + P V G +
Sbjct: 231 --ATYYGVAMGLARITEAIFRNEDAVLTVS--ALLEGEYEE-EDVYIGVPAVINRNGIRN 285
Query: 333 IVKGLKVDEFSRAKMDATAEELAE 356
+V+ + +++ ++K +A+ L +
Sbjct: 286 VVE-IPLNDEEQSKFAHSAKTLKD 308
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 71.8 bits (177), Expect = 3e-14
Identities = 49/301 (16%), Positives = 99/301 (32%), Gaps = 46/301 (15%)
Query: 75 MLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERK 134
++D+ + +++ A P V + V+ G ++ G R
Sbjct: 30 LVDL--DRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRL 86
Query: 135 DVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 194
++ +N ++ + + AP +LV NP + + L+ L
Sbjct: 87 QLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYA------------LSGLP 133
Query: 195 HNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEK 242
R +G ++E L+V V ++ G H ++ + A V G
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQV----GGV 188
Query: 243 PVREAVADDNWLNT-----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTP 297
P+ E + V++ II+ + + + + +L
Sbjct: 189 PLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKG--ATYYGIGAGLARLVRAILTDE 246
Query: 298 KGTW-VSMGVYSDGSYGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELA 355
KG + VS ++ G+ + S P + G V + RA + +AE L
Sbjct: 247 KGVYTVS--AFTPEVAGV-LEVSLSLPRILGAGGVAGTVY-PSLSPEERAALRRSAEILK 302
Query: 356 E 356
E
Sbjct: 303 E 303
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 71.4 bits (176), Expect = 3e-14
Identities = 59/286 (20%), Positives = 109/286 (38%), Gaps = 44/286 (15%)
Query: 90 MELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAS 149
M++ P + + KD ++ V+ G RK G R D+ KNV I K
Sbjct: 50 MDINHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQ 108
Query: 150 ALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQ-------- 201
+ K+ + +LVV+NP + ++++ + L + +G
Sbjct: 109 NIMKY-YNHGVILVVSNPVDIITYMIQK------------WSGLPVGKVIGSGTVLDSIR 155
Query: 202 ----ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNT- 256
+SE+L V V +V II G H +Q P + + K + E + D T
Sbjct: 156 FRYLLSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHI----AGKNINEYIDDPKCNFTE 210
Query: 257 ----EFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTW-VSMGVYSDGS 311
+ V+ GA IIK + + + + I + +L V +G
Sbjct: 211 EDKKKIAEDVKTAGATIIK--NKGATYYGIAVSINTIVETLLKNQNTIRTVG--TVINGM 266
Query: 312 YGIPEGLIYSFP-VTCEKGEWSIVKGLKVDEFSRAKMDATAEELAE 356
YGI E + S P + +G +++ + + +AE++ +
Sbjct: 267 YGI-EDVAISLPSIVNSEGVQEVLQ-FNLTPEEEEALRFSAEQVKK 310
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 70.6 bits (174), Expect = 6e-14
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 22/205 (10%)
Query: 75 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGM 131
++D + AEA ++ AA P+ G D + ++ G +K G
Sbjct: 30 LVDRDEDRAQAEA-----EDIAHAA-PVSHGTRVWHGGHSELADAQVVILTAGANQKPGE 83
Query: 132 ERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 191
R D++ KN I++ + + AP+ +LV +NP + + + AP I T
Sbjct: 84 SRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGT 140
Query: 192 RLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADD 251
LD R +++ V + ++ G H ++ + A V PV + +
Sbjct: 141 VLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMV----AGMPVADFMQAQ 195
Query: 252 NWLNTEF-----ITTVQQRGAAIIK 271
N E + A+II+
Sbjct: 196 NLPWNEQVRAKIDEGTRNAAASIIE 220
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 60.2 bits (147), Expect = 2e-10
Identities = 25/216 (11%), Positives = 68/216 (31%), Gaps = 42/216 (19%)
Query: 75 MLDIEPA---AEALNGVKMELIDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPR---- 127
+D A A+ ++ DA L + A D ++ + G +
Sbjct: 31 FIDANEAKVKADQ-----IDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQD 85
Query: 128 KEGMERKDVMSKNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 187
+R + S+ ++ + L++ + ++V++NP + + +
Sbjct: 86 NPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQH---------- 134
Query: 188 TCLTRLDHNRAMGQ------------ISERLKVHVSDVKNVIIWGNHSSTQYPDVNHATV 235
+T ++ +G + E + V + G H ++Q+ + V
Sbjct: 135 --VTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRV 191
Query: 236 TTSKGEKPVREAVADDNWLNTEFITTVQQRGAAIIK 271
+P+ + ++ G ++
Sbjct: 192 ----MGQPIVTLADAGDIDLAAIEEEARKGGFTVLN 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 4e-05
Identities = 47/330 (14%), Positives = 102/330 (30%), Gaps = 115/330 (34%)
Query: 25 IIRHMWS------FLDIPKEPCRVLVTGATGQIGYAL-------VPMIARGIMLGPDQ-- 69
++ ++ + F ++ C++L+T Q+ L + + + L PD+
Sbjct: 249 VLLNVQNAKAWNAF-NLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 70 PVILHMLDIEPA---AEALNG--VKMELIDAAFPLLKGVVATTD------------VVEA 112
++L LD P E L ++ +I ++ +AT D ++E+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 113 C--------------------KDVNIAVMVGGFPRK------EGMERKDVMSKNVSIYKA 146
+I P + + DVM ++K
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHK- 413
Query: 147 QASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERL 206
S +EK + + ++ L+ + +N L H + +
Sbjct: 414 -YSLVEKQPKESTISI--------PSIYLEL---KVKLENEYAL----HRSIVDHYNIPK 457
Query: 207 KVHVSDVKNVII---WGNHSSTQYPDVNHATVTTSKGEK--PVREAVADDNWLNTEFITT 261
D+ + + +H + H E+ R D +L
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIG--H----HLK-NIEHPERMTLFRMVFLDFRFL------- 503
Query: 262 VQQRGAAIIKARKLSSALSAASSACDHIRD 291
+Q K R S+A +A+ S + ++
Sbjct: 504 -EQ------KIRHDSTAWNASGSILNTLQQ 526
Score = 28.3 bits (62), Expect = 5.1
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 174 ILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDVNHA 233
IL F + N C D +++ +S+ ++ ++I+ + S
Sbjct: 21 ILSVFEDAF-VDNFDCKDVQDMPKSI--LSKE------EIDHIIMSKDAVSGTLRLF--- 68
Query: 234 TVTTSKGEKPVREAVADD-----NWLNTEFITTVQQR 265
SK E+ V++ V + +L + T +Q
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 42.8 bits (100), Expect = 1e-04
Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 34/208 (16%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
++ G G G+A + + + + + D++ EA K E+I
Sbjct: 7 KIAYIGG-GSQGWA--RSLMSDLSIDERMSGTVALYDLDF--EAAQ--KNEVIGNHSGNG 59
Query: 101 KG-VVATTDVVEACKDVN---IAVMVGGF---------PRKEGMERKDVMS--------- 138
+ A + + +A + I+++ G P + G+ + +
Sbjct: 60 RWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRG 119
Query: 139 -KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHN- 196
+ V I+ A A+ +A P V+ NP + +L + P I A
Sbjct: 120 LRAVPIFAEIARAIRDYA-PESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKL 178
Query: 197 --RAMGQISERLKVHVSDVKNVIIWGNH 222
+ + D++ ++ NH
Sbjct: 179 LAEMVTERLGIEVPRREDIRVNVLGINH 206
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 40.5 bits (94), Expect = 6e-04
Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 33/234 (14%)
Query: 56 VPMIARGIMLG-PDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEAC 113
P I ++ + P+ L + D + + ++ ATTD EA
Sbjct: 41 TPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAF 100
Query: 114 KDVN---IAVMVGGF---------PRKEGMERKDVMS--------KNVSIYKAQASALEK 153
DV+ + VG + P K G+ ++ +++ +EK
Sbjct: 101 TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEK 160
Query: 154 HAAPNCKVLVVANPANTNALILKEFAPSIPAKNIT----CLTRLDHNRAMGQISERLKVH 209
++ P+ +L +NPA A + P+ NI + + +KV
Sbjct: 161 YS-PDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPVGIEDRMAQILGLSSRKEMKVR 219
Query: 210 VSDVKNVI----IWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFI 259
+ + I + P + + G P EA A + N F
Sbjct: 220 YYGLNHFGWWTSIQDQEGNDLMPKLKEH--VSQYGYIPKTEAEAVEASWNDTFA 271
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 39.8 bits (92), Expect = 0.001
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 31/203 (15%)
Query: 73 LHMLDIEPAAEALNGVKM--ELIDAAFPLLKGVVATTDVVEACKDVN---IAVMVGGF-- 125
L ++DI E L V + + + + T D A + VGG
Sbjct: 39 LWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEA 98
Query: 126 -------PRKEGMERKDVMS--------KNVSIYKAQASALEKHAAPNCKVLVVANPANT 170
P K G+ ++ + + + +E+ P+ ++ NPA
Sbjct: 99 RAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGM 157
Query: 171 NALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNHSSTQYPDV 230
+ + + C +++ L V V NH
Sbjct: 158 VTEAVLRYTKQEKVVGL-CNV---PIGMRMGVAKLLGVDADRVHIDFAGLNHMVF----G 209
Query: 231 NHATVTTSKGEKPVREAVADDNW 253
H + + + V + VA +
Sbjct: 210 LHVYLDGVEVTEKVIDLVAHPDR 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 52/357 (14%), Positives = 112/357 (31%), Gaps = 102/357 (28%)
Query: 77 DIEPAAEALNGVKMELIDAAFPLLKGVVA----------TTDVVEAC-----------KD 115
D EP A EL+ F L G V+ V+ C D
Sbjct: 51 DDEPTTPA------ELV-GKF--L-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 116 VN-IAVMVGGFPRKEGMERKDV--------MSKNVSIYKAQASALEKHA-APNCKVLVV- 164
++ +A + ++ K++ + K SAL + N +++ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 165 ---ANPA----------NTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVS 211
N T +++ + A+ ++ L R + +E++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLD------AEKVFTQGL 213
Query: 212 DVKNVIIWGNHSSTQYPDVNH-ATVTTSKGEKPVREAVADDNWLNT---------EFITT 261
++ W + S PD ++ ++ S P+ + +++ T E +
Sbjct: 214 NILE---WLENPSNT-PDKDYLLSIPISC---PLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 262 VQ---QRGAAIIKARKLSSALSAAS--SACDHIRDWVLGTPKGTWVSMGVYSDGSYGI-- 314
++ ++ A ++ S S + + ++ GV +Y
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF------FI--GVRCYEAYPNTS 318
Query: 315 --PEGLIYSFPVTCEKGEWS---IVKGLKVDEFSRAKMDATAEELAEEKTLAYSCLN 366
P L S + +G S + L E + ++ T L K + S +N
Sbjct: 319 LPPSILEDS--LENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHLPAGKQVEISLVN 372
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 38.5 bits (90), Expect = 0.002
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 13/91 (14%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+ + GA G +G L + + LG ++D+ A
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAG------FSGAVDAR 69
Query: 101 KGVVATTDVVEACKDVNI-------AVMVGG 124
++ E + A++ G
Sbjct: 70 AADLSAPGEAEKLVEARPDVIFHLAAIVSGE 100
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 37.3 bits (87), Expect = 0.004
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 41 RVLVTGATGQIGYALVP-MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 99
R+LVTGA GQ+G + + + + + ++PA V+ +L DA
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMA-----EILRLADLSPLDPAGPNEECVQCDLADAN--A 57
Query: 100 LKGVVATTDVV 110
+ +VA D +
Sbjct: 58 VNAMVAGCDGI 68
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 36.7 bits (85), Expect = 0.007
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 27/106 (25%)
Query: 41 RVLVTGATGQIGYALVPMIA---------------RGIMLGPD--QPVILHMLDIEPAAE 83
VL+ GA GQI ++ +A + P Q ++ +L+ +
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQ 84
Query: 84 ALNGVKMELIDAAFPLLKG---VVATTDVVEACKDVNIA--VMVGG 124
A+ G D + L G + V+ A K ++ + V
Sbjct: 85 AMQGQ-----DIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLS 125
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 36.1 bits (83), Expect = 0.010
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 41 RVLVTGATGQIGYALVP-MIARGIMLGPDQPVIL--HMLDIEPAAEALNGVKMELIDAAF 97
++ + GATG+ G ++ RG + + + I + +N ++ ++ D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRG-----HEVTAIVRNAGKITQTHKDINILQKDIFDLTL 56
Query: 98 PLLKGVVATTDVVEACKD 115
L D D
Sbjct: 57 SDLSDQNVVVDAYGISPD 74
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 36.2 bits (84), Expect = 0.010
Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 43/204 (21%)
Query: 41 RVLVTGATGQIGYALVPM-IARGI-----------MLGPDQPVILH---MLDIEPAAEAL 85
++++ GA+G +G AL+ + RG + ++ + + + ++ E
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVC 65
Query: 86 NGVKMELIDAAFPLLKG-------VVATTDVVEACKDVNIA--VMVGGF------PRKEG 130
G +I A P + +++ K + +MVGG P
Sbjct: 66 KGADA-VISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRL 124
Query: 131 MERKDVMSKNVSIYKAQASALEKHAAPNCKV-LVVANPANTNALILKEFAPSIPAKNITC 189
M+ +V + KA ++ V +PA P + T
Sbjct: 125 MDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAAD-------MRPGVR----TG 173
Query: 190 LTRLDHNRAMGQISERLKVHVSDV 213
RL + + I + V D
Sbjct: 174 RYRLGKDDMIVDIVGNSHISVEDY 197
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 36.3 bits (83), Expect = 0.015
Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 26/179 (14%)
Query: 63 IMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKD---VNI 118
+ + D + + DI+ + + ++ + V+ + A D V
Sbjct: 23 LDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFK---VLISDTFEGAVVDAKYVIF 79
Query: 119 AVMVGGF---------PRKEGMERKD------VMSKNVSIYKAQASALEKHAAPNCKVLV 163
GG P K G+ ++ + + + N ++
Sbjct: 80 QFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVN 139
Query: 164 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLKVHVSDVKNVIIWGNH 222
NP+ ++ + + C + +I+E + DV NH
Sbjct: 140 FTNPSGHITEFVRNYLEYEKFIGL-CNV---PINFIREIAEMFSARLEDVFLKYYGLNH 194
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 35.4 bits (82), Expect = 0.017
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 34 DIPKEPCRVLVTGATGQIGYALVPM-IARGIMLGPDQPVILHMLDIEPAAEALNGVKMEL 92
++ + RVLV GA G++ L+ +G +PV + + E E ++
Sbjct: 16 NLYFQGMRVLVVGANGKVARYLLSELKNKG-----HEPVAMVR-NEEQGPELRERGASDI 69
Query: 93 IDAAFPLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKD 135
+ A D A ++ V G G ++
Sbjct: 70 VVAN--------LEEDFSHAFASIDAVVFAAGSGPHTGADKTI 104
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 35.0 bits (81), Expect = 0.019
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 25/132 (18%)
Query: 41 RVLVTGATGQIGYALVPM-IARGI-------------MLGPD--QPVILHMLDIEPAAEA 84
++ + GATGQ G + + G GP V+ +L +
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 85 LNGVKMELIDAAFPLLKGVVATTD------VVEACKDVNIA--VMVGGFPRKEGMERKDV 136
+ G +I T +V A K + V +
Sbjct: 65 VAGQDA-VIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPP 123
Query: 137 MSKNVSIYKAQA 148
+ V+ +
Sbjct: 124 RLQAVTDDHIRM 135
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 34.9 bits (81), Expect = 0.027
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 41 RVLVTGATGQIGYALV 56
++L+ GA GQIG L
Sbjct: 4 KILIIGACGQIGTELT 19
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 34.6 bits (79), Expect = 0.035
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 41 RVLVTGATGQIGYALVP-MIARG 62
++ V GATG+ G A+V RG
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRG 24
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 33.8 bits (77), Expect = 0.056
Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 15/122 (12%)
Query: 41 RVLVTGATGQIGYALVP-MIARGIMLGPDQPVILHMLDIE--PAAEALNGVKMELIDAAF 97
+ + GA GQI L ++ D + L+ ++ E ++ ++ +I+ +
Sbjct: 7 YITILGAAGQIAQXLTATLLTYT-----DMHITLYGRQLKTRIPPEIIDHERVTVIEGS- 60
Query: 98 PLLKGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSK-NVSIYKAQASALEKHAA 156
+ +A + + + + +S+ N+ + A
Sbjct: 61 -----FQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALSRXNIRRVIGVSMAGLSGEF 115
Query: 157 PN 158
P
Sbjct: 116 PV 117
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 34.1 bits (78), Expect = 0.057
Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 11/113 (9%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
VLVTGA+G+ G + + G + + + + + D
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEG---SDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA-- 60
Query: 101 KGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEK 153
+ A + ++ V++ K E+
Sbjct: 61 ------DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQ 107
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 34.3 bits (79), Expect = 0.061
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 27 RHMWSFLDIPKEPCRVLVTGATGQIGYALVPM-IARGIML-----GPDQPVILHMLDIEP 80
+ P V +TG+ G +G AL G + +P + P
Sbjct: 135 FLSRTSTLFDGSPLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNP 194
Query: 81 AAEALNGV 88
A++ L+G
Sbjct: 195 ASDLLDGA 202
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 34.1 bits (79), Expect = 0.062
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 41 RVLVTGATGQIGYALVPMIA-RGIMLGPDQPVILHMLDI 78
+L+ G TGQ+G+ L +A G ++ D D
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDF 40
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 33.4 bits (77), Expect = 0.080
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 41 RVLVTGATGQIGYALVPM-IARGI 63
++ + G+TG++G +L+
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDY 25
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 33.8 bits (78), Expect = 0.080
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 41 RVLVTGATGQIGYALV 56
RVLVTGATG +G A+
Sbjct: 4 RVLVTGATGLLGRAVH 19
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 33.4 bits (77), Expect = 0.088
Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 38/110 (34%)
Query: 41 RVLVTGATGQIGYALVPMIA------RGIMLGPDQPVILHMLDIEPA----------AEA 84
+ V GATG +G+ I I Q L L+ E A
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA 74
Query: 85 LNGV----------------KMELIDAAFPLLKGVVATTDVVEACKDVNI 118
L G+ E + +A + T AC +
Sbjct: 75 LRGLDGVIFSAGYYPSRPRRWQEEVASA------LGQTNPFYAACLQARV 118
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 33.1 bits (76), Expect = 0.11
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 42 VLVTGATGQIGYALVPM----------IARGIMLGPDQPVILHMLDIEPAAEALNGVKME 91
+LVTG++GQIG LVP IA I+ + LD+ E V+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKY 61
Query: 92 LIDAAFPL--LKGVVATTDVVEACKDVNI 118
IDA F L + D A VN+
Sbjct: 62 SIDAIFHLAGILSAKGEKDPALAY-KVNM 89
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 33.1 bits (76), Expect = 0.13
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDI 78
R LV G G IG A+ I + P + LH++DI
Sbjct: 37 RFLVLGGAGSIGQAVTKEIFK---RNPQK---LHVVDI 68
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 32.5 bits (75), Expect = 0.18
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 41 RVLVTGATGQIGYALV 56
++L+TGA GQ+G +
Sbjct: 14 KILITGANGQLGREIQ 29
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 32.5 bits (75), Expect = 0.20
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 41 RVLVTGATGQIGYALV 56
RV++TGA GQ+G L
Sbjct: 7 RVIITGANGQLGKQLQ 22
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 32.2 bits (74), Expect = 0.24
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 41 RVLVTGATGQIGYALV 56
R L+TGA+GQ+G L
Sbjct: 2 RTLITGASGQLGIELS 17
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 31.5 bits (72), Expect = 0.33
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 41 RVLVTGATGQIGYALVP-MIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 99
R+LVTGA G +G A+ P + + + ++D+ A V +L DA
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLA-----HEVRLSDIVDLGAAEAHEEIVACDLADAQ--A 56
Query: 100 LKGVVATTDVV 110
+ +V D +
Sbjct: 57 VHDLVKDCDGI 67
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 31.9 bits (73), Expect = 0.33
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 34 DIPKEPCRVLVTGATGQIGYALV 56
++P +P L+TG G IG L+
Sbjct: 22 ELPAQPKVWLITGVAGFIGSNLL 44
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 31.8 bits (73), Expect = 0.36
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMV 122
L VVA DVV+A +D +I + V
Sbjct: 72 HKLPPNVVAVPDVVQAAEDADILIFV 97
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 31.5 bits (72), Expect = 0.38
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 97 FPLLKGVVATTDVVEACKDVNIAVMV 122
PL +VA +D+ D ++ + +
Sbjct: 85 VPLPHNIVAHSDLASVINDADLLIFI 110
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 31.6 bits (71), Expect = 0.41
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 41 RVLVTGATGQIGYALVP-MIARGIMLGPDQPVIL--HMLDIEPAAEALNGVKMELIDAA- 96
L+ G TG IG +L + GP + + +N V+ ++ D
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDD 62
Query: 97 -FPLLKGVVATTDVV 110
L + T V
Sbjct: 63 SQAKLSPLTDVTHVF 77
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.4 bits (71), Expect = 0.42
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
R+L+ GATG IG +A+ + +L + + + ++
Sbjct: 6 RILLIGATGYIGRH----VAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIV 61
Query: 101 KGVVATTD-VVEACKDVNIAVMVGGFPRKEG 130
G + +VEA K+V++ + G + E
Sbjct: 62 HGSIDDHASLVEAVKNVDVVISTVGSLQIES 92
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 31.1 bits (71), Expect = 0.47
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 41 RVLVTGATGQIGYALV 56
+++TGATG +G +
Sbjct: 2 NIMLTGATGHLGTHIT 17
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.48
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 27/47 (57%)
Query: 139 KNVSIYKAQASALEKHAAPNCKVLVVANPANTNALILKEFAP-SIPA 184
K ++ K QAS LK +A S PA
Sbjct: 19 KQ-ALKKLQAS-------------------------LKLYADDSAPA 39
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 31.2 bits (70), Expect = 0.58
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 35 IPKEPCRVLVTGATGQIGYALV 56
+P RVL+ GATG IG +
Sbjct: 6 VPSPKGRVLIAGATGFIGQFVA 27
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 31.1 bits (71), Expect = 0.63
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 24 KIIRHMWSFLDI----PKEPCRVLVTGATGQIGYALV 56
+ +M + +I P L+TG G IG L+
Sbjct: 6 HMDIYMSRYEEITQQLIFSPKTWLITGVAGFIGSNLL 42
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 30.2 bits (69), Expect = 0.85
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 41 RVLVTGATGQIGYALVPMIARGI-MLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPL 99
LVTG+T IG A IA + G + V+++ E E + ++ + DA
Sbjct: 12 TALVTGSTAGIGKA----IATSLVAEGAN--VLINGRREENVNETIKEIRAQYPDAILQP 65
Query: 100 LKGVVATTD----VVEACKDVNIAV-MVGGFPRKEGMERKD 135
+ + T V+E V+I + +G F E + D
Sbjct: 66 VVADLGTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPD 106
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 30.3 bits (68), Expect = 0.97
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
++++ G TG IG + R + I + + ++ E ++
Sbjct: 6 KIIIYGGTGYIGKF----MVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTII 61
Query: 101 KGVVATTD-VVEACKDVNIAV 120
+G + + +V K V+I +
Sbjct: 62 EGEMEEHEKMVSVLKQVDIVI 82
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.3 bits (68), Expect = 0.98
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 38 EPCRVLVTGATGQIGYALV 56
+ RVL+ G TG IG +V
Sbjct: 3 KKSRVLIVGGTGYIGKRIV 21
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 29.9 bits (68), Expect = 1.0
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 42 VLVTGATGQIGYALV 56
+ +TGATGQ+G+ ++
Sbjct: 2 IAITGATGQLGHYVI 16
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 30.2 bits (67), Expect = 1.1
Identities = 31/208 (14%), Positives = 57/208 (27%), Gaps = 35/208 (16%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVI-LHMLDIEPAAEALNGVKMELIDAAFPL 99
++ + GA G ++L + + P + ++DI+ +
Sbjct: 5 KIGIIGA-GSAVFSLR--LVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 61
Query: 100 LKGVVATTDVVEACKD---VNIAVMVGGFPRKEGMERKD----------------VMSKN 140
T ++ + D V MVGG E + + V
Sbjct: 62 DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 121
Query: 141 VSIYKAQASALEKHA------APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 194
Q A +P L ANP ++ I A
Sbjct: 122 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRT-VPIKAVGFC-----H 175
Query: 195 HNRAMGQISERLKVHVSDVKNVIIWGNH 222
+ + +I E+L + V + NH
Sbjct: 176 GHYGVMEIVEKLGLEEEKVDWQVAGVNH 203
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 30.3 bits (69), Expect = 1.2
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 299 GTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVKGLK-------VDEFSRAKMDATA 351
GTW MG S + L + T E G + LK + + +
Sbjct: 258 GTWSLMGFESQTPFTNDTALAANI--TNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDL 315
Query: 352 EELAEE 357
L
Sbjct: 316 PALIAA 321
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 29.9 bits (67), Expect = 1.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 41 RVLVTGATGQIGYALV 56
++L+ G TG IG +V
Sbjct: 4 KILILGPTGAIGRHIV 19
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.6 bits (67), Expect = 1.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 42 VLVTGATGQIGYALV 56
+ VTGATGQ+G ++
Sbjct: 3 IAVTGATGQLGGLVI 17
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor,
lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB:
3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Length = 307
Score = 29.5 bits (67), Expect = 1.5
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 42 VLVTGATGQIGYA----LVPMIARGIMLGPDQPVILHM---LDIEPAAEAL-NGVKMELI 93
+ + + G I Y V M+ P PV LH+ E +A+ G +I
Sbjct: 44 LFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103
Query: 94 DA-AFPLLKGVVATTDVVEACKDVNIAV 120
DA + + T+ VV+ + ++V
Sbjct: 104 DASHHAFEENLELTSKVVKMAHNAGVSV 131
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II
fructose-1,6-bisphosphate aldolase, glycolytic pathway,
giardia lamblia, drug target; HET: PGH; 1.75A {Giardia
intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A*
3gb6_A*
Length = 323
Score = 29.6 bits (67), Expect = 1.6
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 42 VLVTGATGQIGYA----LVPMIARGIMLGPDQPVILHM---LDIEPAAEAL-NGVKMELI 93
V++ + G + Y+ L + + PD P+ +H+ +E A+ G +I
Sbjct: 45 VILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMI 104
Query: 94 DA-AFPLLKGVVATTDVVEACKDVNIAV 120
DA P + V T +VV +++V
Sbjct: 105 DASHHPFDENVRITKEVVAYAHARSVSV 132
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 29.5 bits (67), Expect = 1.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 41 RVLVTGATGQIGYALV 56
+V +TG GQIG +
Sbjct: 23 KVFITGICGQIGSHIA 38
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 29.8 bits (67), Expect = 1.9
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 26 IRHMWSFLDIPKEPCRVLVTGATGQIGYALVPMIARGIMLGPDQPVIL 73
+R + + +P V I L+ A G+ +P +
Sbjct: 394 VRLIDALSQLPA-GYPVYSNRGASGIDG-LLST-AAGVQRASGKPTLA 438
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 29.2 bits (65), Expect = 2.0
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 103 VVATTDVVEACK-DVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 150
V+ D +E D +I V VG R + + + + V + SA
Sbjct: 187 VIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSA 235
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.5 bits (66), Expect = 2.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 41 RVLVTGATGQIGYALV 56
+++TGA G +G L
Sbjct: 2 NIVITGAKGFVGKNLK 17
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 29.4 bits (66), Expect = 2.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 42 VLVTGATGQIGYALV 56
+ V GATG+ G +L+
Sbjct: 8 IAVVGATGRQGASLI 22
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 29.1 bits (66), Expect = 2.3
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 41 RVLVTGATGQIGYALVPM-IARGI-------MLGPDQPVILHMLDIEPAAEALNGVKMEL 92
RV VTG TG +G ++ + G + + + ++ A+E L+ +L
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 93 ID 94
+
Sbjct: 63 SN 64
>3out_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, MURI, cell envelope;
HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Length = 268
Score = 29.0 bits (66), Expect = 2.4
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 158 NCKVLVVA-NPANTNAL-ILKEFAPSIP 183
K +++A N + A I++E A +IP
Sbjct: 69 EVKAIIIACNTISAIAKDIVQEIAKAIP 96
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A
{Escherichia coli} SCOP: c.1.10.2
Length = 286
Score = 28.7 bits (65), Expect = 2.8
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 46 GATGQIGYALVPMIARGIMLGPDQPVILHM---LDIEPAAEAL-NGVKMELIDA-AFPLL 100
G I + + + P+ LH+ ++ + GV+ +ID FP
Sbjct: 52 GTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFA 111
Query: 101 KGVVATTDVVEACKDVNIAV 120
+ V VV+ C + +V
Sbjct: 112 ENVKLVKSVVDFCHSQDCSV 131
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 28.9 bits (65), Expect = 2.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 42 VLVTGATGQIGYALV 56
V+V G TG G ++
Sbjct: 8 VVVFGGTGAQGGSVA 22
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 29.1 bits (65), Expect = 3.1
Identities = 12/141 (8%), Positives = 44/141 (31%), Gaps = 3/141 (2%)
Query: 148 ASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRAMGQISERLK 207
L++ + + + L+ E A ++ ++ R ++ +
Sbjct: 330 KEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLED 389
Query: 208 VHVSDVKNVIIWGNHSSTQYPDVNHATVTTSKGEKPVREAVADDNWLNTEFITTVQQRGA 267
+ +D ++ G+ + P ++ + KP + + + + +R
Sbjct: 390 LLQADF--ALVLGDPTEEA-PILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTD 446
Query: 268 AIIKARKLSSALSAASSACDH 288
+ + L ++ +
Sbjct: 447 KMALFAPYRAPLMKWAAIHEV 467
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 28.7 bits (64), Expect = 3.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 39 PCRVLVTGATGQIGYALV 56
++L+ G TG IG +V
Sbjct: 11 KSKILIFGGTGYIGNHMV 28
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 28.7 bits (64), Expect = 3.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 144 YKAQASALEKHAAPNCKVLVVANPAN 169
++ S L+K P K+ NP+N
Sbjct: 231 WQYPDSELDKLKDPAIKIFFCVNPSN 256
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 28.6 bits (65), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 41 RVLVTGATGQIGYALV-PMIARGIMLGPDQPVI 72
R+LVTG G IG V ++A P VI
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVI 34
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.3 bits (63), Expect = 3.4
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 13/87 (14%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+ +V TG +G ++A G + V+L ++ A A + ++ F +
Sbjct: 121 KAVVLAGTGPVGMRSAALLAG---EGAE--VVLCGRKLDKAQAAA-----DSVNKRFKVN 170
Query: 101 KGVVATTD---VVEACKDVNIAVMVGG 124
T D EA K + G
Sbjct: 171 VTAAETADDASRAEAVKGAHFVFTAGA 197
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 28.0 bits (63), Expect = 3.5
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 41 RVLVTGATGQIGYALVPMIARG 62
++L+ GA+G +G A+ + +
Sbjct: 5 KILLIGASGTLGSAVKERLEKK 26
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 28.4 bits (64), Expect = 3.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 41 RVLVTGATGQIGYALVPMI 59
+L+TG TG G V +
Sbjct: 23 TILITGGTGSFGKCFVRKV 41
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 28.2 bits (64), Expect = 4.3
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 143 IYKAQASALEKHAAPNCKVLVVANPAN-TNALILKEFAPSIPAKNITCLT 191
+LE+ + K +++ +P+N +I +E ++
Sbjct: 139 FCDFTVESLEEALSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIIS 188
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 28.3 bits (64), Expect = 4.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 41 RVLVTGATGQIGYALV 56
++ VTG TG +G +V
Sbjct: 4 KIAVTGGTGFLGQYVV 19
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 28.0 bits (63), Expect = 4.8
Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 18/122 (14%)
Query: 41 RVLVTGATGQIGYALVPMIAR--GIMLG-----PDQPVILHMLDIEPAAEALNGVKMEL- 92
R+ V GA G++G L+ I R + L + GV++
Sbjct: 23 RLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDAS-ILIGSDFLGVRITDD 81
Query: 93 IDAAFPLLKGVV------ATTDVVEACKDVNIAVMVG--GFPRKEGMERKDVMSKNVSIY 144
++AF +G++ A+ ++ ++G GF K + +K +I
Sbjct: 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFS-KTEEAQIADFAKYTTIV 140
Query: 145 KA 146
K+
Sbjct: 141 KS 142
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 27.9 bits (63), Expect = 4.9
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKME-LIDAAFPL 99
RV V GA G++G +V +A D + LD L E +ID P
Sbjct: 2 RVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAGDPLSLLTDGNTEVVIDFTHP- 55
Query: 100 LKGVVATTDVVEACKDVNIAVMVG--GF--PRKEGMERKDVMSKNVSIYKA 146
+E D I +VG GF R + +E V N S+ A
Sbjct: 56 ----DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIA 102
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.20A {Coccidioides immitis}
Length = 306
Score = 28.0 bits (63), Expect = 5.2
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 14/88 (15%)
Query: 46 GATGQIGYALVPMIARGIMLGPDQPVILHM---LDIEPAAEALNGVKMELIDAAF----- 97
A LV A P+ LH+ D E A + + E + F
Sbjct: 61 WAIQYADSLLVRTAASACR-AASVPITLHLDHAQDPEIIKRAADLSRSETHEPGFDSIMV 119
Query: 98 -----PLLKGVVATTDVVEACKDVNIAV 120
+ + T ++V C IA
Sbjct: 120 DMSHFSKEENLRLTRELVAYCNARGIAT 147
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 27.6 bits (62), Expect = 6.0
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 36 PKEPCRVLVTGATGQIGYALV 56
P V G TG + LV
Sbjct: 6 PIGKKTACVVGGTGFVASLLV 26
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 27.6 bits (62), Expect = 6.0
Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 19/122 (15%)
Query: 41 RVLVTGATGQIGYALVPMIAR--GIMLG-----PDQPVILHMLDIEPAAEALNGVKMEL- 92
++ + GA+G++G L+ + L P + D GV +
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ--DAGAFLGKQTGVALTDD 66
Query: 93 IDAAFPLLKGVV------ATTDVVEACKDVNIAVMVG--GFPRKEGMERKDVMSKNVSIY 144
I+ ++ T ++A ++ +++G GF + + + +++
Sbjct: 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFS-EPQKAQLRAAGEKIALV 125
Query: 145 KA 146
+
Sbjct: 126 FS 127
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG;
2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB:
1ib4_A*
Length = 339
Score = 27.4 bits (61), Expect = 7.3
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 276 SSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPEGLIYSFPVTCEKGEWSIVK 335
+S+ S + ++C I + P GT + + +DG++ I G +F G V
Sbjct: 12 ASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGET-TFGYKEWSGPLISVS 70
Query: 336 GLKV 339
G +
Sbjct: 71 GSDL 74
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 27.6 bits (61), Expect = 7.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 36 PKEPCRVLVTGATGQIGYALV 56
E VL+TGATG +G LV
Sbjct: 70 SPELRTVLLTGATGFLGRYLV 90
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 27.5 bits (62), Expect = 7.8
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 144 YKAQASALEKHAAPNCKVLVVANPAN-TNALILKEF 178
+ L + P K++ + N N T A++ + +
Sbjct: 140 WLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTY 175
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 27.5 bits (62), Expect = 7.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 41 RVLVTGATGQIGYALV 56
R+L+TG G IG L
Sbjct: 9 RILITGGAGFIGGHLA 24
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 27.3 bits (61), Expect = 7.9
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 41 RVLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
+V+V G G +G A++ + G V+ +D+ +A + L+
Sbjct: 5 KVIVYGGKGALGSAILEFFKKN---GYT--VLN--IDLSANDQA----------DSNILV 47
Query: 101 KGVVATTDVVEACKDVNIAVMVGG 124
G T+ ++ + + + G
Sbjct: 48 DGNKNWTEQEQSILEQTASSLQGS 71
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 27.5 bits (62), Expect = 8.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 91 ELIDAAFPLLKGVVATTDV------VEACKDVNIAVM 121
++DAA LK V++T V ++ K I V
Sbjct: 68 RILDAAGANLK-VISTMSVGIDHLALDEIKKRGIRVG 103
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 27.2 bits (61), Expect = 8.2
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 27 RHMWSFLDIPKEPCR-VLVTGATGQIGYALVPMIAR 61
W+ D+P R V++TGA +G +AR
Sbjct: 3 MTGWTAADLPSFAQRTVVITGANSGLGAVTARELAR 38
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related
N-acetyltransferase superfamily fold, NYSGXRC, PSI,
protein structure initiative; 2.00A {Bacillus subtilis}
SCOP: d.108.1.1
Length = 140
Score = 26.4 bits (59), Expect = 8.4
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 19/65 (29%)
Query: 27 RHMWSFLDIPKEP---CRVLVTGATGQIGYALVPMIARGIMLG--------------PDQ 69
H+ + ++P R + G++ V R +G
Sbjct: 43 EHIVVYDG--EKPVGAGRWRMKDGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGAS 100
Query: 70 PVILH 74
IL+
Sbjct: 101 GFILN 105
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 27.3 bits (61), Expect = 8.5
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 144 YKAQASALEKHAAPNCKVLVVANPAN-TNALI----LKEFAPSIPAKNITCLT 191
K + ++ +NP N T + L+ ++ +
Sbjct: 168 EKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 27.2 bits (61), Expect = 8.7
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 41 RVLVTGATGQIGYALVPMIAR--GIMLG-----PDQPVILHMLDIEPAAEALNGVKMEL- 92
RV + GA G++G L+ G+ LG ++ E A GV ++
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAG-ELAGAGKTGVTVQSS 65
Query: 93 IDAAFPLLKGVV------ATTDVVEACKDVNIAVMVG--GFPRKEGMERKDVMSKNVSIY 144
+DA + T + + C+ +++G GF + G + + +++I
Sbjct: 66 LDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFD-EAGKQAIRDAAADIAIV 124
Query: 145 KA 146
A
Sbjct: 125 FA 126
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural
genomics, joint center for structural genomics, JCSG;
HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Length = 114
Score = 26.2 bits (58), Expect = 9.8
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 65 LGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACK 114
L PD P++L ++D E ++ ID + + T V K
Sbjct: 70 LSPDLPIVLEIVDEEERINLF----LKEID---NIDFDGLVFTADVNVVK 112
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 26.9 bits (60), Expect = 9.9
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 42 VLVTGATGQIGYALVPMIARGIMLGPDQPVILHMLDIEPAAEALNGVKMELIDAAFPLL 100
LVTG IG A I R + V+L D+ A+ ++ E + F L
Sbjct: 7 ALVTGGNKGIGLA----IVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQL 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,669,571
Number of extensions: 349033
Number of successful extensions: 1201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 144
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)