BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>017741
MAVKFGSSSVSCVANSLSSPLLSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGP
LKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSNLQDISSSGSPSIQYEGSNGK
PGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDS
LLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALV
LSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVY
RLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRR
CLYGIH

High Scoring Gene Products

Symbol, full name Information P value
AT5G63040 protein from Arabidopsis thaliana 3.6e-89
AT1G48460 protein from Arabidopsis thaliana 3.7e-32
AT3G60590 protein from Arabidopsis thaliana 4.2e-11

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017741
        (366 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2166330 - symbol:AT5G63040 "AT5G63040" species...   890  3.6e-89   1
TAIR|locus:2198070 - symbol:AT1G48460 "AT1G48460" species...   352  3.7e-32   1
TAIR|locus:2103326 - symbol:AT3G60590 species:3702 "Arabi...   178  4.2e-11   1


>TAIR|locus:2166330 [details] [associations]
            symbol:AT5G63040 "AT5G63040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] EMBL:CP002688 GO:GO:0009507 EMBL:BT024743
            IPI:IPI00521354 RefSeq:NP_568963.1 UniGene:At.29017 PRIDE:Q29Q13
            EnsemblPlants:AT5G63040.1 GeneID:836424 KEGG:ath:AT5G63040
            TAIR:At5g63040 OMA:ISIWSIS Genevestigator:Q3E868 Uniprot:Q29Q13
        Length = 366

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 190/318 (59%), Positives = 218/318 (68%)

Query:    41 YDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSN 100
             Y  L L+  K+   H+     K     +KR  + LA SE++  Y E   N P+ +S    
Sbjct:    42 YHSLHLKTDKIGSLHISSRGQKPSEVSRKRTYLPLATSEEKFHYTEDTTNDPDTVSPQIG 101

Query:   101 LQDISSSGSPSIQYEGSNGKPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVA 160
              +        +IQY  ++GKPG ISFYN   K ED I     Q+    ++WL+GPAVLV+
Sbjct:   102 TEATPRDDDSTIQYNRNDGKPGFISFYNPRNKTEDIIIPPETQSPWGRLLWLIGPAVLVS 161

Query:   161 SFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATD 220
             SFI P +YLR+I+S VFEDSLLTDFLILFFTEALFYCGVA FLL+IDR R+         
Sbjct:   162 SFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKGSGK---VP 218

Query:   221 DNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQ 280
              NR    QLGQRISSVA LVLSL+IPMVTMG VWPWTGPAASATLAPYLVGIVVQFAFEQ
Sbjct:   219 QNRINPSQLGQRISSVATLVLSLMIPMVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQ 278

Query:   281 YARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSXXXXXX 340
             YARYR SPS P+IPIIFQVYRLHQLNRAAQLVTALSFTV+GAEAT +NLAI  S      
Sbjct:   279 YARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLN 338

Query:   341 XXXXXXXICIWSLSSFLM 358
                    I IWS+SSFLM
Sbjct:   339 VIQVLGVISIWSISSFLM 356


>TAIR|locus:2198070 [details] [associations]
            symbol:AT1G48460 "AT1G48460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009536 "plastid" evidence=IDA] EMBL:CP002684 GO:GO:0009941
            EMBL:BT020308 EMBL:BT020516 IPI:IPI00533239 RefSeq:NP_175279.1
            UniGene:At.38414 STRING:Q5PNY9 PaxDb:Q5PNY9 PRIDE:Q5PNY9
            EnsemblPlants:AT1G48460.1 GeneID:841267 KEGG:ath:AT1G48460
            TAIR:At1g48460 eggNOG:NOG270538 InParanoid:Q5PNY9 OMA:RGSSCWP
            PhylomeDB:Q5PNY9 ProtClustDB:CLSN2682225 Genevestigator:Q5PNY9
            Uniprot:Q5PNY9
        Length = 340

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/245 (31%), Positives = 126/245 (51%)

Query:   119 GKPGLISFYNRPYKREDEIRISTV--QNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMV 176
             GK G +SF    ++  +E ++ +   Q  + S +W++ P VL++S I P  +L  II   
Sbjct:    88 GKSGSVSFNGLTHQLVEESKLVSAPFQEEKGSFLWVLAPVVLISSLILPQFFLSGIIEAT 147

Query:   177 FEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNR-ALHPQL-GQRIS 234
             F++  + + +  F  E +FY G+A+FL + DR++R   PY      R  L   L G   S
Sbjct:   148 FKNDTVAEIVTSFCFETVFYAGLAIFLSVTDRVQR---PYLDFSSKRWGLITGLRGYLTS 204

Query:   235 SVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIP 294
             +   + L +++P+  + + WP  G  A   + P+LVG  VQ  FE     R S  WP++P
Sbjct:   205 AFLTMGLKVVVPVFAVYMTWPALGIDALIAVLPFLVGCAVQRVFEARLERRGSSCWPIVP 264

Query:   295 IIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSXXXXXXXXXXXXXICIWSLS 354
             I+F+VYRL+Q+ RAA  V  L F ++ A  T+       +             +C+WS  
Sbjct:   265 IVFEVYRLYQVTRAATFVQRLMFMMKDAATTAEITERGVALVGLVVTLQFLAVMCLWSFI 324

Query:   355 SFLMR 359
             +FLMR
Sbjct:   325 TFLMR 329


>TAIR|locus:2103326 [details] [associations]
            symbol:AT3G60590 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009706 "chloroplast
            inner membrane" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
            "plastid" evidence=IDA] EMBL:CP002686 GO:GO:0009706 IPI:IPI00528384
            RefSeq:NP_974468.1 UniGene:At.19770 PRIDE:F4JBW0
            EnsemblPlants:AT3G60590.3 GeneID:825230 KEGG:ath:AT3G60590
            OMA:WFAGFTA PhylomeDB:F4JBW0 ArrayExpress:F4JBW0 Uniprot:F4JBW0
        Length = 404

 Score = 178 (67.7 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 54/193 (27%), Positives = 96/193 (49%)

Query:   134 EDEIRISTVQNSRSSI------VWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLI 187
             E+++ +S  Q + S +      +WL+GP+VL+ S + P+L+L   +S VF  S +   L 
Sbjct:   164 EEKVDMSAQQRTNSQVQVLKWPIWLLGPSVLLTSGMAPTLWLP--LSSVFLGSNVVSLLS 221

Query:   188 LFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPM 247
             L   + +F  G  +FLL+ D   R   P  + +      P    +  ++ +L++  ++PM
Sbjct:   222 LIGLDCIFNLGATLFLLMADSCARPKDPSQSCNSK----PPFSYKFWNMFSLIIGFLVPM 277

Query:   248 VTM-----GLV---WPWTGPAASAT-LAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQ 298
             + +     GL+    P     +SA  L PY + + VQ   E    + +SP W V P++++
Sbjct:   278 LLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYE 337

Query:   299 VYRLHQLNRAAQL 311
              YR+ QL R   L
Sbjct:   338 AYRILQLMRGLTL 350


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      366       327   0.00088  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  210 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.52u 0.13s 28.65t   Elapsed:  00:00:01
  Total cpu time:  28.52u 0.13s 28.65t   Elapsed:  00:00:01
  Start:  Thu May  9 18:33:11 2013   End:  Thu May  9 18:33:12 2013

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