BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017741
         (366 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6F9R1|CYOE_ACIAD Protoheme IX farnesyltransferase OS=Acinetobacter sp. (strain ADP1)
           GN=cyoE PE=3 SV=2
          Length = 292

 Score = 34.3 bits (77), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 18/118 (15%)

Query: 222 NRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQY 281
           NRAL   + + +S   AL+ + I+ ++  G++W W  P  S + A  ++G VV   F   
Sbjct: 72  NRAL---VKKTVSPSTALIFAFILGIIGFGILWFWVNP-YSFSFA--IIGFVVYVGFYSL 125

Query: 282 ARYRKSPSWPVI--------PIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAI 331
              R S    +I        P+I      HQ + AA L+    F   G     H+ AI
Sbjct: 126 WTKRTSIHQTIIGSISGASPPVIGYTAVTHQFDVAALLI----FLAYGLWQMPHSWAI 179


>sp|D0LB45|LYSX_GORB4 Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX
           OS=Gordonia bronchialis (strain ATCC 25592 / DSM 43247 /
           JCM 3198 / NCTC 10667) GN=lysX PE=3 SV=1
          Length = 1138

 Score = 32.0 bits (71), Expect = 7.3,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 139 ISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCG 198
           ++   +SR  I W +    LV   +  +L L         D + TDF +        + G
Sbjct: 109 VAIALSSRKRIAWWIATIYLVLFMVSNALLL--------VDPVATDFGVDTDERIQIWIG 160

Query: 199 VAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTG 258
           + +    +  +  + R ++      AL   LG  I  + A  L      V  GLVW W G
Sbjct: 161 LGIDAAALIFLIVTYRQFYTRVRRGALFRALGVLIVGLTAATL------VGWGLVWAWPG 214

Query: 259 PAASATLAPYLVGIVVQFA 277
                   PY    VV F 
Sbjct: 215 SLERTERLPYAFNRVVTFG 233


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,148,364
Number of Sequences: 539616
Number of extensions: 4761662
Number of successful extensions: 15876
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 15874
Number of HSP's gapped (non-prelim): 11
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)