Query 017741
Match_columns 366
No_of_seqs 39 out of 41
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 04:12:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017741.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017741hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ds5a1 g.39.1.11 (A:11-48) Cl 7.2 46 0.0033 21.6 0.1 15 125-139 5-19 (38)
2 d1jb0j_ f.23.18.1 (J:) Subunit 7.2 1.4E+02 0.01 19.6 2.6 29 336-364 5-36 (41)
3 d1ppjg_ f.23.13.1 (G:) Ubiquin 5.3 2.1E+02 0.015 20.6 2.9 19 238-256 43-61 (75)
4 d1mjsa_ b.26.1.1 (A:) Smad3 MH 5.3 89 0.0065 26.0 0.8 24 286-319 163-186 (190)
5 d1aiea_ a.53.1.1 (A:) p53 tetr 4.9 1.8E+02 0.013 18.0 1.9 11 304-314 18-28 (31)
6 d1bu2a1 a.74.1.1 (A:22-148) Vi 4.6 1.5E+02 0.011 22.0 1.7 12 342-353 73-84 (127)
7 d1jb0i_ f.23.17.1 (I:) Subunit 4.6 2.1E+02 0.015 18.4 2.2 23 230-253 8-30 (38)
8 d1g3nc1 a.74.1.1 (C:16-147) Vi 4.5 1.5E+02 0.011 22.0 1.7 14 341-354 77-90 (132)
9 d1iica2 d.108.1.2 (A:219-455) 4.3 1.4E+02 0.01 25.8 1.5 21 114-134 98-119 (237)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 4.3 67 0.0049 23.2 -0.6 26 143-168 58-83 (91)
No 1
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=7.25 E-value=46 Score=21.56 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=11.7
Q ss_pred eeecCCCCccccccc
Q 017741 125 SFYNRPYKREDEIRI 139 (366)
Q Consensus 125 SF~~~~~~~~~~~~~ 139 (366)
||||++.++++..+.
T Consensus 5 SFCgk~~~eV~~LI~ 19 (38)
T d2ds5a1 5 SFCGKSQHEVRKLIA 19 (38)
T ss_dssp TTTCCBTTTSSCEEE
T ss_pred eCCCCCHHHHHHHhc
Confidence 899999888877443
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=7.16 E-value=1.4e+02 Score=19.65 Aligned_cols=29 Identities=17% Similarity=0.065 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhhccC
Q 017741 336 GALLNVLQLLGVICIWSLSSFLM---RRCLYG 364 (366)
Q Consensus 336 ~~ll~vlQ~LgviciWSlssFLm---r~~ps~ 364 (366)
.+-+++--++..+|++....+|. ||||..
T Consensus 5 ~~ylstAPVla~~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 5 LTYLSTAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp HHHTTBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34455667899999999999986 888865
No 3
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.27 E-value=2.1e+02 Score=20.58 Aligned_cols=19 Identities=37% Similarity=0.751 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhcCCc
Q 017741 238 ALVLSLIIPMVTMGLVWPW 256 (366)
Q Consensus 238 ~~vlg~viPlv~mGv~WP~ 256 (366)
.+++-++.|+++..++|-|
T Consensus 43 ~~~l~v~PPfi~~Y~iy~W 61 (75)
T d1ppjg_ 43 ACILRVAPPFVAFYLVYTW 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhceEEcCHHHHHHHHHHH
Confidence 7888889999998888877
No 4
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.27 E-value=89 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.3
Q ss_pred CCCccceeeeeehhhHHHHHHHHHHHHHHHhhhc
Q 017741 286 KSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTV 319 (366)
Q Consensus 286 kSpvWpvVPiIfevYRl~QL~RAaqLv~~L~F~~ 319 (366)
.-|||.-| .|++++|+++..+=+|
T Consensus 163 stPCWiEi----------~l~~pl~~ld~vL~~m 186 (190)
T d1mjsa_ 163 STPCWIEL----------HLNGPLQWLDKVLTQM 186 (190)
T ss_dssp TSSSEEEE----------EEHHHHHHHHHHHHHT
T ss_pred cCCEEEEE----------ecCChhHHHHHHHhhc
Confidence 47999988 7899999999988555
No 5
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.85 E-value=1.8e+02 Score=17.99 Aligned_cols=11 Identities=45% Similarity=0.531 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 017741 304 QLNRAAQLVTA 314 (366)
Q Consensus 304 QL~RAaqLv~~ 314 (366)
.||+|++|-++
T Consensus 18 elnealelkda 28 (31)
T d1aiea_ 18 ELNEALELKDA 28 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 68999988765
No 6
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=4.63 E-value=1.5e+02 Score=22.04 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q 017741 342 LQLLGVICIWSL 353 (366)
Q Consensus 342 lQ~LgviciWSl 353 (366)
+|.+|+.|+|--
T Consensus 73 lqLi~~tcL~IA 84 (127)
T d1bu2a1 73 LQKIGAACVLIG 84 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999943
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.55 E-value=2.1e+02 Score=18.44 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=14.8
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhc
Q 017741 230 GQRISSVAALVLSLIIPMVTMGLV 253 (366)
Q Consensus 230 gy~~~~v~~~vlg~viPlv~mGv~ 253 (366)
.|.-|-+.- +.+.+.|.++||+.
T Consensus 8 syLPwI~iP-vv~wl~p~vvMglL 30 (38)
T d1jb0i_ 8 SFLPWIFIP-VVCWLMPTVVMGLL 30 (38)
T ss_dssp TTHHHHHHH-HHHTHHHHHHHHHH
T ss_pred HhcchhHHH-HHHHHHHHHHHHHH
Confidence 456665544 56677777777763
No 8
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=4.52 E-value=1.5e+02 Score=21.99 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 017741 341 VLQLLGVICIWSLS 354 (366)
Q Consensus 341 vlQ~LgviciWSls 354 (366)
-+|.+|+.|+|--+
T Consensus 77 ~lqLia~tcl~iAs 90 (132)
T d1g3nc1 77 HFQKTGSACLLVAS 90 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36999999999433
No 9
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.34 E-value=1.4e+02 Score=25.78 Aligned_cols=21 Identities=33% Similarity=0.641 Sum_probs=16.0
Q ss_pred ecCCCCC-cceEeeecCCCCcc
Q 017741 114 YEGSNGK-PGLISFYNRPYKRE 134 (366)
Q Consensus 114 ~~~~~GK-pG~VSF~~~~~~~~ 134 (366)
+|..||| ..|+|||..|+..-
T Consensus 98 ve~~~g~ITDF~SFY~Lpstvi 119 (237)
T d1iica2 98 VEQPDGKITDFFSFYSLPFTIL 119 (237)
T ss_dssp EECTTSCEEEEEEEEECCEEEC
T ss_pred EECCCCcEeeEEEEEecchhhh
Confidence 5666775 67999999988643
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.28 E-value=67 Score=23.23 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=20.5
Q ss_pred ccCCCceEEeehhHHHHhhhccchhh
Q 017741 143 QNSRSSIVWLVGPAVLVASFIFPSLY 168 (366)
Q Consensus 143 ~~~~~s~lWLlGP~vLvAS~i~P~l~ 168 (366)
+.++--..|-+.|++++....+|+.-
T Consensus 58 ~n~~lEi~WtiIP~iil~~iav~s~~ 83 (91)
T d1fftb2 58 HSNKVEAVVWTVPILIIIFLAVLTWK 83 (91)
T ss_dssp CCSHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCceehhhHHHHHHHHHHHHHHHHHH
Confidence 44555688999999999998888653
Done!